Metagenome / Metatranscriptome Family F099615

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099615
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	50 residues
Representative Sequence	NLGMGVEFQEIRRGDRPLLSYVLSKLRTKRVEEFAEVEVVREPLAATG
Number of Associated Samples	90
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.00 %
% of genes near scaffold ends (potentially truncated)	92.23 %
% of genes from short scaffolds (< 2000 bps)	92.23 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.204 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.650 % of family members)
Environment Ontology (ENVO)	Unclassified (24.272 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.427 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.05% β-sheet: 0.00% Coil/Unstructured: 78.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01245	Ribosomal_L19	37.86
PF01746	tRNA_m1G_MT	13.59
PF05227	CHASE3	10.68
PF07730	HisKA_3	4.85
PF07676	PD40	1.94
PF00691	OmpA	1.94
PF00072	Response_reg	0.97
PF00588	SpoU_methylase	0.97
PF13378	MR_MLE_C	0.97
PF01351	RNase_HII	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0335	Ribosomal protein L19	Translation, ribosomal structure and biogenesis [J]	37.86
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	4.85
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	4.85
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	4.85
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	4.85
COG0164	Ribonuclease HII	Replication, recombination and repair [L]	0.97
COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain	Translation, ribosomal structure and biogenesis [J]	0.97
COG0565	tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU	Translation, ribosomal structure and biogenesis [J]	0.97
COG1039	Ribonuclease HIII	Replication, recombination and repair [L]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.20 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.20 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.20 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	65.05 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	36.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	25.24 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.89 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	25.24 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	25.24 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.89 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	11.65 %
Unclassified	root	N/A	6.80 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	2.91 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.89 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7.77 %
Unclassified	root	N/A	6.80 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	2.91 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_101757971	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300005167\|Ga0066672_10514208	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	777	Open in IMG/M
3300005434\|Ga0070709_10514614	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300005434\|Ga0070709_10854429	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	717	Open in IMG/M
3300005437\|Ga0070710_10405854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	914	Open in IMG/M
3300005445\|Ga0070708_100038301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4189	Open in IMG/M
3300005454\|Ga0066687_10919721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300005526\|Ga0073909_10238277	Not Available	804	Open in IMG/M
3300005537\|Ga0070730_10136486	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300005538\|Ga0070731_10380660	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	938	Open in IMG/M
3300005560\|Ga0066670_10153291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1348	Open in IMG/M
3300005569\|Ga0066705_10581680	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300005602\|Ga0070762_11238372	Not Available	517	Open in IMG/M
3300005764\|Ga0066903_100171653	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3173	Open in IMG/M
3300005993\|Ga0080027_10127220	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	968	Open in IMG/M
3300006162\|Ga0075030_100499283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	967	Open in IMG/M
3300006162\|Ga0075030_101480043	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300006175\|Ga0070712_102032586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300007982\|Ga0102924_1157869	All Organisms → cellular organisms → Bacteria → Acidobacteria	1038	Open in IMG/M
3300009029\|Ga0066793_10370730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	824	Open in IMG/M
3300009088\|Ga0099830_10744052	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300009090\|Ga0099827_10954640	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300009623\|Ga0116133_1180762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300009672\|Ga0116215_1520734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300010343\|Ga0074044_10058261	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2634	Open in IMG/M
3300010361\|Ga0126378_11107885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300010373\|Ga0134128_12477841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300011066\|Ga0138524_1125030	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300011120\|Ga0150983_10063608	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300011120\|Ga0150983_15493215	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300011120\|Ga0150983_16485411	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300012201\|Ga0137365_10981693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300012354\|Ga0137366_11146721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300012359\|Ga0137385_10774490	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300012685\|Ga0137397_10822769	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300014487\|Ga0182000_10611324	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300015371\|Ga0132258_10216387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4658	Open in IMG/M
3300017932\|Ga0187814_10103327	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1052	Open in IMG/M
3300017933\|Ga0187801_10006066	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3857	Open in IMG/M
3300017943\|Ga0187819_10290668	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	951	Open in IMG/M
3300017972\|Ga0187781_10825283	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300017973\|Ga0187780_10529749	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300017994\|Ga0187822_10374120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300017995\|Ga0187816_10387873	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300018006\|Ga0187804_10545972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300018024\|Ga0187881_10294093	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300018037\|Ga0187883_10625810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300018047\|Ga0187859_10567103	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300018062\|Ga0187784_10488790	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	992	Open in IMG/M
3300019264\|Ga0187796_1619842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300019284\|Ga0187797_1213389	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300019786\|Ga0182025_1384202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1833	Open in IMG/M
3300020582\|Ga0210395_11279671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300020583\|Ga0210401_10329020	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1389	Open in IMG/M
3300020583\|Ga0210401_11377229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300021046\|Ga0215015_10926647	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	928	Open in IMG/M
3300021046\|Ga0215015_11059735	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300021180\|Ga0210396_10485890	All Organisms → cellular organisms → Bacteria → Acidobacteria	1081	Open in IMG/M
3300021180\|Ga0210396_10735964	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	850	Open in IMG/M
3300021405\|Ga0210387_10788748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	840	Open in IMG/M
3300021475\|Ga0210392_10908704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300021559\|Ga0210409_10830910	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300021560\|Ga0126371_10587745	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1262	Open in IMG/M
3300021861\|Ga0213853_10782071	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1419	Open in IMG/M
3300022531\|Ga0242660_1018267	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1298	Open in IMG/M
3300022726\|Ga0242654_10073436	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1022	Open in IMG/M
3300025939\|Ga0207665_10377414	Not Available	1075	Open in IMG/M
3300026281\|Ga0209863_10077438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	980	Open in IMG/M
3300026304\|Ga0209240_1212274	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300027576\|Ga0209003_1076503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300027669\|Ga0208981_1177522	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300027681\|Ga0208991_1048959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1276	Open in IMG/M
3300027729\|Ga0209248_10076566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
3300027842\|Ga0209580_10544684	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300027869\|Ga0209579_10194359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1086	Open in IMG/M
3300027879\|Ga0209169_10136675	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1274	Open in IMG/M
3300028795\|Ga0302227_10086822	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1323	Open in IMG/M
3300028800\|Ga0265338_10611839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300028906\|Ga0308309_10157233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1835	Open in IMG/M
3300028906\|Ga0308309_11805876	Not Available	517	Open in IMG/M
3300030058\|Ga0302179_10351114	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300030509\|Ga0302183_10399382	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300030596\|Ga0210278_1118522	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300030596\|Ga0210278_1212337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300030693\|Ga0302313_10343887	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300030730\|Ga0307482_1061712	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	941	Open in IMG/M
3300030730\|Ga0307482_1112355	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300031090\|Ga0265760_10332396	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300031344\|Ga0265316_10271882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1240	Open in IMG/M
3300031446\|Ga0170820_11846412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300031595\|Ga0265313_10157915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300031720\|Ga0307469_10185398	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300031823\|Ga0307478_10521250	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	991	Open in IMG/M
3300031823\|Ga0307478_10892845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300032180\|Ga0307471_101321919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	883	Open in IMG/M
3300032180\|Ga0307471_103046655	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300032782\|Ga0335082_10480375	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300032954\|Ga0335083_11079789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300033158\|Ga0335077_10429340	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300033158\|Ga0335077_10700317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1043	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.12%
Host-Associated	Host-Associated	3.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.55%
Aquatic	Environmental → Aquatic	14.56%
Plants	Host-Associated → Plants	3.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.67%
Freshwater	Environmental → Aquatic → Freshwater	11.65%
Peat	Environmental → Terrestrial → Peat	3.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.91%
Sediment	Environmental → Aquatic → Sediment	1.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.60%
Loam	Environmental → Terrestrial → Soil → Loam	17.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.97%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.91%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.94%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.97%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011066	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019264	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027030	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030596	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25616J43925_101166523	3300002917	Grasslands Soil	VAVKAKVKYLIGNQGMGVEFQEIRRGDQPLLSYVLSKLRTMKREDEFIKVEVVREMAATAG*
Ga0062593_1017579712	3300004114	Soil	KNLVSNAGMGVEFQQIRRGDRPLLGYILSRLRRRPVEDFVEVEVVSDRLVHAATAL*
Ga0066672_105142082	3300005167	Soil	NLVSNARMGVEFQEIRRGDRPLLGYVLSRLRRRPVEDFVEVEVVSDRLVRAAAV*
Ga0070709_105146141	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	EFQEIRRGDRPPLDYVLSKLKTRRTEDFVPVEVVHEPLVAAAG*
Ga0070709_108544292	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GVEFHEIRRGDRPLLNYVLSKLRSKRVEEFVEVEVVADRLVAVAG*
Ga0070710_104058542	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LGMGVEFQEIRRGDRPLLTYVLGKLRTMKMEDFVEVEVVTEPMAVVAG*
Ga0070708_1000383018	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LIGNQGMGVEFQEIRRGDQPLLSYVLSKLRTLKREDEFIKVEVVREMAATAG*
Ga0066687_109197212	3300005454	Soil	LRAQVKNLVNDFAMGVEFQEIRRGDRPLLTYVLQKLRGKRVEEFVEVEVEVAPKRLAAVLP*
Ga0073909_102382772	3300005526	Surface Soil	DRPLLTYVLGKLRTMKMEDFVEVEVVTEPMAVVAG*
Ga0070730_101364861	3300005537	Surface Soil	FQEIRRGDRPLLNYVLSKLRSKRVEEFVEVEVVADRLVAAAG*
Ga0070731_103806602	3300005538	Surface Soil	KARVKYLVDNLGMGVEFQEIRRGDRPLLSYVLSKLRTRRVEESTRAEIVSPPLTTATV*
Ga0066670_101532913	3300005560	Soil	DNLGMGVEFQEIRRGDRPLLSYVLSKLRSRRVEELVEVEVVSERMAAVTG*
Ga0066705_105816802	3300005569	Soil	RMGVEFQEIRRGDRPLLGYVLSRLRRRPVEDFVEVEVVSDRLVRAAAV*
Ga0070762_112383721	3300005602	Soil	RRGDRPLLSYVLSKLKTRRVEEFAQVEVVTEPLVAAAI*
Ga0066903_1001716533	3300005764	Tropical Forest Soil	LGMGVEFQQIRRGDRPLLEYVLGKVKARRVEEVSRVEAVDPLAATPG*
Ga0080027_101272203	3300005993	Prmafrost Soil	NAGMGVEFQEIRQGDRPLLSYLLGKLATESVREFAHVEVVTESPTAIAG*
Ga0075030_1004992833	3300006162	Watersheds	VKYLVESLGMGVEFQEIRRGDGPLLSYVLSRLRTRRVEEFAQVEAVSEPLVAAG*
Ga0075030_1014800431	3300006162	Watersheds	VEFQEIRRGDGPLLSYVLSQLRTRRVEEFPQVEVVSDPLVAATG*
Ga0070712_1020325862	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	YLVDNLGMGVEFQQIRRGDRPLLDYVLSKLKSRRVEAYPKLELAGQSVPAVVTT*
Ga0102924_11578691	3300007982	Iron-Sulfur Acid Spring	YLVNSLGMGVEFQEIRRGDRPLLSYVLSKLRTKRVKEFVGVDVLREPMSPIAG*
Ga0066793_103707302	3300009029	Prmafrost Soil	AVKAQVKYMVNNLAMGVEFQEIRRGDRPLLSYVLSRLRTRRVTEFVEVEVIREPLASAAG
Ga0099830_107440523	3300009088	Vadose Zone Soil	KAQVKYLIGNQGMGVEFQEIRRGDQPLLSYVLSKLRTLKREDEFIKVEVVREMAATAG*
Ga0099827_109546401	3300009090	Vadose Zone Soil	SNLGMGVEFHEIRRGDRPLLEYVLSKLRKARNNRVEDFVPVEVVTEPLTAAV*
Ga0116133_11807622	3300009623	Peatland	QIRRGDRPLLSYVLTKLRTKRVEEFAEVEVVREPLAVAG*
Ga0116215_15207341	3300009672	Peatlands Soil	MGVEFQEIQLGDRPLLSHVLGKLRSKRVEEFAEVVVVTEPLMAAAG*
Ga0074044_100582614	3300010343	Bog Forest Soil	VEFQEVRRGDRPLLNYVLSKVRGRRGEEFAGVEVVTEFLATAG*
Ga0126378_111078852	3300010361	Tropical Forest Soil	FGMGVEFREIRRGDRPMLTYILSKLRSKRVEEFARVEVVHEALAAAG*
Ga0134128_124778412	3300010373	Terrestrial Soil	EFHEIRRGDRPLLNYVLSRLRSKRVEEFVEVEVVADRLVAAAG*
Ga0138524_11250301	3300011066	Peatlands Soil	LVESLGMGVEFQEIRRGDGPLLSYVLSRLRTRRVEELPVVEVVSEPLVAAG*
Ga0150983_100636082	3300011120	Forest Soil	VDSLGMGVEFQEIRRGDRPLLSYVLSKLRTRRVEEFAQVEVVTEPLAVAG*
Ga0150983_154932151	3300011120	Forest Soil	LVNNLEMGVEFHEIRRGDRPLLSYVLSKLRRKRVEDFVEVEVVREPLAVAG*
Ga0150983_164854112	3300011120	Forest Soil	GDRPLLNYVLSKLRTKRVEEFAEVEVVREPLAVAG*
Ga0137365_109816931	3300012201	Vadose Zone Soil	VEFQEIRRGDRPLLSYVLSKLKSARVEDFVPVDVVTEPLAASG*
Ga0137366_111467212	3300012354	Vadose Zone Soil	LNAQVIYLMDNLGMGVEFQEIRRGDRPLLAYALGKLQSKRPEEFVEVEVVTEPLAAAAG*
Ga0137385_107744903	3300012359	Vadose Zone Soil	EIRRGDRPLLIFALSKLRVKEVEEFVEVEVVHESLAAAVG*
Ga0137397_108227692	3300012685	Vadose Zone Soil	GMGVEFQEIRRGDGPLLTYVLSKLKTRKVEEFAQVEVVTEPLVAVAG*
Ga0182000_106113242	3300014487	Soil	GMGVEFQEIRRGDRPLLGYILSRLKRRRIEEFVEVEVVSDRMVHAAIAG*
Ga0132258_102163872	3300015371	Arabidopsis Rhizosphere	MGVEFQEIRCGDRPPLDYVLSKLKTRRTEDFVPVEVVHEPLVAAAG*
Ga0187814_101033271	3300017932	Freshwater Sediment	NLGMGVEFQEIRRGDRPLLSYVLSKLRTKRVEEFAEVEVVREPLAATG
Ga0187801_100060667	3300017933	Freshwater Sediment	ESLGMGVEFQEIRRGDGPLLSYVLSRLRTRRVEEFPRVEVVSEPLVAAG
Ga0187819_102906681	3300017943	Freshwater Sediment	QEIRRGDRPLLSYVLSRLKTRRVEEFGQRDVVREPLVAVAG
Ga0187781_108252831	3300017972	Tropical Peatland	SHVMGVEFHEIRRGDRPLLRYVLSKVGARRVEDFARLEVVAGPLAVAAK
Ga0187780_105297493	3300017973	Tropical Peatland	QVKYLVGNLGMGVEFQQIRRGDRPLLNYVLNKLKAKRLEDFVPVEIVTDRVIATAG
Ga0187822_103741201	3300017994	Freshwater Sediment	QVKYLTDNLGMGVEFQEIRRGDRPLLTYVLGKLRTMKMEDFVEVEVVTEPLAVAAG
Ga0187816_103878732	3300017995	Freshwater Sediment	VDNLGMGVEFQQIRRGDRPLLSYVLSKLRTKRVEEFAEVEVVREFAVAG
Ga0187804_105459721	3300018006	Freshwater Sediment	RGMGVEFQEIRRGDRPLLSYVLSRLKTRRVEEFGQRDVVREPLVAVAG
Ga0187881_102940932	3300018024	Peatland	EIRRGDRPLLSYVLSRLRTRRVEEFAQAEVVREPLVAVAG
Ga0187883_106258102	3300018037	Peatland	VDNLGMGVEFHEIRRGDRPLLTYVLSKLKTRRVEEFARVEVETEPLAAAG
Ga0187859_105671032	3300018047	Peatland	QVKYLVDNLQMGVEFQEIRRGDRPLLSYVLSKLRTKRVEEFVAVEVVTEPLAVAG
Ga0187784_104887901	3300018062	Tropical Peatland	LGMGVEFQEIRRGDRPLLSYVLGQLRNRRVEDFAKIEGADAPLVAAAV
Ga0187796_16198422	3300019264	Peatland	AQVRHLADNFGMGVEFQEIRVGDRPLLGYVLSKLRTRRVEDLARVEVVRQPLAGPAV
Ga0187797_12133891	3300019284	Peatland	DNFGMGVEFQEIRVGDRPLLGYVLSKLRTRRVEDLARVEVVRRPLAGPAV
Ga0182025_13842023	3300019786	Permafrost	MGVGVSGNRRGDRPLLSYVLSRLRTRKVKEFVDAEVIREPLASAAG
Ga0210395_112796711	3300020582	Soil	KARVKYLVDSLGMGVEFQEIRRGDTPLLSYVLSKLRTRRVEEFPRVEVVTEPLVAVAG
Ga0210401_103290201	3300020583	Soil	LKARVKYLVESLGMGVEFQEIRRGDGPLLSYVLSRLRTKRVEEFAQVEVAREPLVAAG
Ga0210401_113772292	3300020583	Soil	EFQQIRRGDRPLLEYVLGKLKTRRVEEFARVVTANEPLSAAV
Ga0215015_109266471	3300021046	Soil	MAKNLGMGVEFQEIRQGDRPLLDYPLHKLKTKSIEEFAKVEVVTEPLRAAAAAAG
Ga0215015_110597351	3300021046	Soil	MGVEFHEIRRGDQPLLSYVLSKLRTMKREDEFIKVEVVREMAATAG
Ga0210396_104858901	3300021180	Soil	KAQSKYLVDNLGMGVEFQEIRRGDRPLLSYVLSRLRMKKVPDFVEVEVSREPLAVVG
Ga0210396_107359641	3300021180	Soil	VEFQEIRRGDRPLLSYVLSKLRTKRVEEFVEVEVVREPLAVAG
Ga0210387_107887482	3300021405	Soil	LGMGVEFREIRRGDRPLLTYVLSKLKTRRVEEFAQVEVVTEPLVAAAI
Ga0210392_109087041	3300021475	Soil	VKAKVKYLVDNLGMGVEFQEIRRGDRPLLSYVLSKLRTRRVEEFAEVEVVREPMIAAAG
Ga0210409_108309101	3300021559	Soil	VDNLGMGVEFQEIRRGDRPLLSYVLSKLRKRRVEEFVEVEVVREFAAAG
Ga0126371_105877452	3300021560	Tropical Forest Soil	ALKAQVKYLVNDLGMGVEFQEIRRGDRPLLGYVLSKLRMRRVEEFAPREVAKEGLATAGQIV
Ga0213853_107820713	3300021861	Watersheds	VALKARVKYLVESLGMGVEFQEIRRGDGPLLSYVLSRLRTRRVDEFAQVEVVSEPLVAAG
Ga0242660_10182671	3300022531	Soil	EIRRGDRPLLSYVLSKLRRKRVEDFVEVEVVREPLAVAG
Ga0242654_100734363	3300022726	Soil	QVKYLVDKVGMGVEFQEIRRGDRPLLNYVLSKLRTKRVEEFAEVEVVREPLAVAG
Ga0207665_103774142	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LKHAGVEFQEIRRGDTPLLSYVLGKLRTRRVEEFPRVEVVTEPLVAVGG
Ga0209863_100774383	3300026281	Prmafrost Soil	NAGMGVEFQEIRQGDRPLLSYLLGKLATESVREFAHVEVVTESPTAIAG
Ga0209240_12122741	3300026304	Grasslands Soil	RMGVEFQEIRRGDRPLLSYVLSKVRAKRVEEFVEVEVVSERLAVAG
Ga0209152_101696122	3300026325	Soil	MALKAQVRYLVNNLGMGVEFHEIRRGDRPLLEYVLSKLRKARNKSVEDFVPVEVVTEPLAAAG
Ga0208240_10205171	3300027030	Forest Soil	IRVAVKAQVKYLVDNLQMGVEFQEIRRGDRPLLSYVLSKLRTKRVEEFAAVEVVTEPLAAAG
Ga0209003_10765032	3300027576	Forest Soil	GMGVEFQEIRRGDRPLLSYVLSKLRTRRVREFVGADMVPEPLASAAG
Ga0208981_11775221	3300027669	Forest Soil	VFDVSLAVKAQVRYLIGNQGMGVEFHEIRRGDQPLLSYVLNKLRTLKREEEFIKVDVVREMAASAG
Ga0208991_10489591	3300027681	Forest Soil	AQVKYLIGNQGMGVEFHEIRRGDQPLLSYVLNKLRTLKREEEFIKVDVVREMAASAG
Ga0209248_100765661	3300027729	Bog Forest Soil	QIRRGDRPLLSYVLSRLRTRRVEEFAQVEVVTEPLAVAGSLA
Ga0209580_105446842	3300027842	Surface Soil	FHEIRRGDRPLLNYVLSKLRSKRVEEFVEVEVVADRLVAAAG
Ga0209579_101943591	3300027869	Surface Soil	KARVKYLVDNLGMGVEFQEIRRGDRPLLSYVLSKLRTRRVEESTRAEIVSPPLTTATV
Ga0209169_101366751	3300027879	Soil	IMEGMGVEFREIRRGDRPLLTYVLSKLKTRRVEEFALVEVVTEPLVAAAI
Ga0302227_100868224	3300028795	Palsa	GVEFQQIRRGDRPLLSYVLSKLRSRRVEEFVEVEVVREPLAVAG
Ga0265338_106118391	3300028800	Rhizosphere	MGVEFQEIRRGDRPLLSYVLSRLRTRRVKEFVEVEVIREPLASAAG
Ga0308309_101572331	3300028906	Soil	VKYLVDNLGMGVEFQEIRRGDRPLLSYVLSRLRMKKVPDFVEVEVSREPLAVVG
Ga0308309_118058761	3300028906	Soil	QEIRRGDRPLLSYVLSKLKTRRVEEFARTESTNEPLANAV
Ga0302179_103511141	3300030058	Palsa	VKAQVKYLVDNLGMGVEFQQIRRGDRPLLSYVLSKLRSRRVEEFVEVEVVREPLAVAG
Ga0302183_103993822	3300030509	Palsa	VKYKTDKVGMGVEFHEIRQGDRPLLNYVLGELGKRRVGEFEDLEVVTETTTVEAG
Ga0210278_11185222	3300030596	Soil	VVFQEIRRGDRPLLSYVLKKLRSRRRDLKEFVDVEVVHEPLPVAG
Ga0210278_12123372	3300030596	Soil	GVEFHEIRRGDRPLLSYVLSKLRRKRVEDFVEVEVVREPLAVAG
Ga0302313_103438871	3300030693	Palsa	LVDNLGMGVEFQQIRRGDRPLLSYVLSKLRSRRVEEFVEVEVVREPLAVAG
Ga0307482_10617121	3300030730	Hardwood Forest Soil	VESLGMGVEFQEIRRGDGPLLSYVLSRLRTKRVEEFAQMEVVREPLVAAG
Ga0307482_11123552	3300030730	Hardwood Forest Soil	VEFQEIRRGDRPLLGYVLSKLRTKRVEEFVEVEVVREPLAVAG
Ga0265760_103323962	3300031090	Soil	VAVKAQVKYLVDNLGMGVEFQQIRRGDRPLLSYVLSKLRSRRVEEFVEVEVVRESLAVAG
Ga0265316_102718821	3300031344	Rhizosphere	LQAQVKYLVDNLGMGVEFHQIRLGDRPLLDYVLSKVRSKRVEEFARVEIVNEVAAAV
Ga0170820_118464121	3300031446	Forest Soil	KARVKYLAENLGMGVEFQEIRRGDRPLLSYALSKLRVKEVEEFVEVEVEVVHESLAAAVG
Ga0265313_101579152	3300031595	Rhizosphere	YLVDNLGMGVEFQEIRRGDRPLLTYVLSKLRARKMEEFVDVEVVTEPLAAAMG
Ga0307469_101853982	3300031720	Hardwood Forest Soil	IRRGDRPLLDYVLGKVRARRVEEFARVEVMNEPLSVAVPV
Ga0307478_105212503	3300031823	Hardwood Forest Soil	AKVKYLVNNLGMGVEFQEIRRGDRPLLGYVLSKLRTKRVEEFVEVEVVREPLAVAG
Ga0307478_108928451	3300031823	Hardwood Forest Soil	NLGMGVEFQEIRRGDRPLLSYVLSRLRMKKVPDFVEVEVSREPLAVVG
Ga0307471_1013219191	3300032180	Hardwood Forest Soil	KYLVDNLGMGVEFQEIRRGDRPLLSYVLSKLRSRRVEEFVEVEVVRERLAVAG
Ga0307471_1030466551	3300032180	Hardwood Forest Soil	TDDAGMGVEFQEIRRGDRPLLDYVLRKLRLKITEDFVKVEVVTEPLAASAG
Ga0335082_104803752	3300032782	Soil	KYLVDNLGMGVEFQQIRRGDRPLLEYVLGKVKTRRVEDFVRVEVANDALAAAG
Ga0335083_110797892	3300032954	Soil	EFQEIRRGDRPLLSYVLSRLRTRKVEEFAPVEVVREPLVAVG
Ga0335077_104293402	3300033158	Soil	IDNLGMGVEFHEIRRGDRPLLSYVLSKLRTKRVEEFARVEVVTEPLVAAAG
Ga0335077_107003171	3300033158	Soil	KYLVDNLGMGVEFQEIRRGDRPLLSYVLSKLRTRRVEEFAQVEVVTEPLVAVAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099615

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences