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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F099603 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 103 |
| Average Sequence Length | 49 residues |
| Representative Sequence | LSTCPRISLLLNKSDTLATEHFGSYGYGYHSAGGESDELRSAKPA |
| Number of Associated Samples | 81 |
| Number of Associated Scaffolds | 103 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 18.45 % |
| % of genes from short scaffolds (< 2000 bps) | 9.71 % |
| Associated GOLD sequencing projects | 79 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.15 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (81.553 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.806 % of family members) |
| Environment Ontology (ENVO) | Unclassified (36.893 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (63.107 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.15 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 103 Family Scaffolds |
|---|---|---|
| PF13401 | AAA_22 | 9.71 |
| PF11959 | DUF3473 | 0.97 |
| PF01522 | Polysacc_deac_1 | 0.97 |
| PF01242 | PTPS | 0.97 |
| COG ID | Name | Functional Category | % Frequency in 103 Family Scaffolds |
|---|---|---|---|
| COG0720 | 6-pyruvoyl-tetrahydropterin synthase | Coenzyme transport and metabolism [H] | 0.97 |
| COG0726 | Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family | Cell wall/membrane/envelope biogenesis [M] | 0.97 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 81.55 % |
| All Organisms | root | All Organisms | 18.45 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300004080|Ga0062385_10110799 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1349 | Open in IMG/M |
| 3300005176|Ga0066679_10036853 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 2738 | Open in IMG/M |
| 3300005177|Ga0066690_10054308 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 2454 | Open in IMG/M |
| 3300005332|Ga0066388_101575305 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1154 | Open in IMG/M |
| 3300006176|Ga0070765_100098308 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 2522 | Open in IMG/M |
| 3300009137|Ga0066709_100700736 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1456 | Open in IMG/M |
| 3300010361|Ga0126378_10003471 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088 | 11924 | Open in IMG/M |
| 3300010362|Ga0126377_10577132 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1166 | Open in IMG/M |
| 3300012582|Ga0137358_10219330 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1296 | Open in IMG/M |
| 3300021405|Ga0210387_10318446 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1370 | Open in IMG/M |
| 3300021479|Ga0210410_10513069 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1070 | Open in IMG/M |
| 3300025916|Ga0207663_10155147 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1610 | Open in IMG/M |
| 3300028906|Ga0308309_10041528 | All Organisms → cellular organisms → Bacteria | 3250 | Open in IMG/M |
| 3300031719|Ga0306917_10055877 | All Organisms → cellular organisms → Bacteria | 2676 | Open in IMG/M |
| 3300031833|Ga0310917_10018399 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3979 | Open in IMG/M |
| 3300031833|Ga0310917_10081514 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 2051 | Open in IMG/M |
| 3300031941|Ga0310912_10367723 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1118 | Open in IMG/M |
| 3300031947|Ga0310909_10177019 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1764 | Open in IMG/M |
| 3300031954|Ga0306926_10147926 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 2907 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 39.81% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 14.56% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 11.65% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 8.74% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.88% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 2.91% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.94% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 1.94% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.94% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 1.94% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 1.94% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 1.94% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.94% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 0.97% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.97% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.97% |
| Termite Gut | Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut | 0.97% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.97% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300003219 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005176 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 | Environmental | Open in IMG/M |
| 3300005177 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 | Environmental | Open in IMG/M |
| 3300005187 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005560 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009792 | Tropical forest soil microbial communities from Panama - MetaG Plot_12 | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010154 | Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010162 | Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2) | Host-Associated | Open in IMG/M |
| 3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
| 3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300012200 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
| 3300012399 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012582 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG | Environmental | Open in IMG/M |
| 3300012918 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG | Environmental | Open in IMG/M |
| 3300015242 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300022525 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022532 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022708 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022712 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022726 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300024227 | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 | Host-Associated | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026557 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal | Environmental | Open in IMG/M |
| 3300027737 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300030586 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031561 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 | Environmental | Open in IMG/M |
| 3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031747 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 | Environmental | Open in IMG/M |
| 3300031777 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24 | Environmental | Open in IMG/M |
| 3300031782 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 | Environmental | Open in IMG/M |
| 3300031797 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 | Environmental | Open in IMG/M |
| 3300031805 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23 | Environmental | Open in IMG/M |
| 3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
| 3300031821 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031941 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080 | Environmental | Open in IMG/M |
| 3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300031959 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24 | Environmental | Open in IMG/M |
| 3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032054 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23 | Environmental | Open in IMG/M |
| 3300032064 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032515 | FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data) | Environmental | Open in IMG/M |
| 3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI26341J46601_101673451 | 3300003219 | Bog Forest Soil | IEASLSMLSACPRISLLLNKSDTLAGEHFGSYEYYYHSQDRESDALRPDKPA* |
| Ga0062385_101107991 | 3300004080 | Bog Forest Soil | IEAALSTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSADSGSDERRSAETA* |
| Ga0066679_100368531 | 3300005176 | Soil | EAALSTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSDSRSDEARSSEIA* |
| Ga0066690_100543083 | 3300005177 | Soil | RISLLLNKSDSLATEHFGSYGYNYHSDSRSDEARSSEIA* |
| Ga0066675_104564351 | 3300005187 | Soil | CPRISLLLNKSDSLATEHFGSYGYNYHSDSRSDEARSSEIA* |
| Ga0066388_1005313301 | 3300005332 | Tropical Forest Soil | TLSACPRISLLLNKSDTLASEHFGSYGYYYHSASGGSDELSSAGPA* |
| Ga0066388_1015753052 | 3300005332 | Tropical Forest Soil | AHNTQQGEIEAALSTLSSCPRISLLLNKSDGLAAEHFGSYGYDYHSAVGGSDEQRSAEPT |
| Ga0066670_109503152 | 3300005560 | Soil | LLLNKSDSLATEHFGSYGYNYHSADSGSDERRSAEVA* |
| Ga0070765_1000983083 | 3300006176 | Soil | CPRISLLLNKSDSLATEHFGSYGYNYHSADSGSDERHSAEIA* |
| Ga0066709_1007007361 | 3300009137 | Grasslands Soil | NTQQGEIEAALTTLSACPRISLLLNKSDSLGTEHFGSYGYNYHSANGGSDEQGSAEPA* |
| Ga0066709_1013157331 | 3300009137 | Grasslands Soil | NNTQQGEIEAALSTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSDSRSDEARSSEIA* |
| Ga0126374_105519371 | 3300009792 | Tropical Forest Soil | IEAHNTQQGEIEAALSTLGACPRISLLLNKSDSLATEHFGSYGYNYHSADSGSDEQRSAETA* |
| Ga0126373_101524651 | 3300010048 | Tropical Forest Soil | RISLLLNKSDTLASEHFGSYGYYYQSASGGGDELRSADPA* |
| Ga0126373_122050611 | 3300010048 | Tropical Forest Soil | SACSRISLLLNKSDTMASEHFGSYEYYYHSQGHESDVLRSGKPA* |
| Ga0127503_101404971 | 3300010154 | Soil | QMEIETSLGMLSACPRISLLLNKSDTLSGEHFGSYEYYYHSQGHETDAPRSNSA* |
| Ga0131853_107340401 | 3300010162 | Termite Gut | TQQAEIEAGLTMLSACPRISLLLNKSDTLASEHFGSYGDYYHSANGGIDELRSADPA* |
| Ga0074044_101829351 | 3300010343 | Bog Forest Soil | LLNKSDTLAGEHFGSYEYYYHSQDRESDALRPDKPA* |
| Ga0074044_103309921 | 3300010343 | Bog Forest Soil | LSMLSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDALRSGNPA* |
| Ga0126372_106470881 | 3300010360 | Tropical Forest Soil | QQVEIEASLSILSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDVLRSGKPA* |
| Ga0126378_1000347110 | 3300010361 | Tropical Forest Soil | EAVLSTLSSCPRISLLLNKSDGLAAEHFGSYGYDYHSAVGGSDEQRSAEPT* |
| Ga0126378_122502871 | 3300010361 | Tropical Forest Soil | LSACPRISLLLNKSDTLASEHFGSYGYYYHSASGGSDELSSAGPA* |
| Ga0126378_128113442 | 3300010361 | Tropical Forest Soil | EIEAGLSTLSACPRISLLLNKSDTLASEHFGSYGYYYHSASGGSDELRSAGPA* |
| Ga0126377_105771322 | 3300010362 | Tropical Forest Soil | PRISLLLNKSDGLAAEHFGSYGYDYHSAVGGSDEQRSAEPT* |
| Ga0126381_1000246637 | 3300010376 | Tropical Forest Soil | CPRISLLLNKSDSLATEHFGSYGYNYHSADAGSDEQRSAETT* |
| Ga0126381_1004800221 | 3300010376 | Tropical Forest Soil | LLLNKSDTLASEHFGSYGYYYHSAGGGSDELRSADPA* |
| Ga0126381_1046584212 | 3300010376 | Tropical Forest Soil | HHTQQMEIEASLSMLSACSRISLLLNKSDTMASEHFGSYEYYYHSQGHESDVLRSGKPA* |
| Ga0126381_1048053181 | 3300010376 | Tropical Forest Soil | NMLGACSRISFLLNKSDTLASDHFGSYGYNYHSANGESDEPRSGESA* |
| Ga0126381_1049157252 | 3300010376 | Tropical Forest Soil | SACPRISLLLNKSEQANVHFGSYEYAYNYALGPSDELQADKPAHA* |
| Ga0126383_106035441 | 3300010398 | Tropical Forest Soil | SLLLNKSDTLASEHFGSYGYYYHSASGGSDELSSAGPA* |
| Ga0137382_106707941 | 3300012200 | Vadose Zone Soil | MEIEASLGMLSSCPRISLLLNKSDTAAGEHFGSYGYYYHSQGRETDAPHSTKPA* |
| Ga0137384_114948411 | 3300012357 | Vadose Zone Soil | EAALSMLSACPQISLLWNKSDTLASEHFGSYGYYYHSPDGNDELRSANPA* |
| Ga0137360_102850391 | 3300012361 | Vadose Zone Soil | LSMLSACPRISLLLNKSDTLSGEHFGSYEYYYHSQGRESDAPRPNKPE* |
| Ga0137360_118663712 | 3300012361 | Vadose Zone Soil | SLGMLSACPRISLLLNKSDTLASEHFGSYGYGYHSPRGESDELRSAKPA* |
| Ga0137361_106652402 | 3300012362 | Vadose Zone Soil | EAALSMLSACPQISLLLNKSDTLASEHFGSYGYYYQSPGDGNDELRSANPA* |
| Ga0134061_13017881 | 3300012399 | Grasslands Soil | NNTQQGEIEAALSTLSPCPRISLLLNKSDSLATEHFGSYGYNYHSDSGSDESRSAEIA* |
| Ga0137358_102193301 | 3300012582 | Vadose Zone Soil | LNKSDSLATEHFGSYGYNYHSADSGSDEPRSAEIA* |
| Ga0137396_103819572 | 3300012918 | Vadose Zone Soil | RISLLLNKSDTLSGEHFGSYEYYYHSQGHETDAPRSNSA* |
| Ga0137412_107796661 | 3300015242 | Vadose Zone Soil | MEIEASLGMLSACPRISLLLNKSDTLSGEHFGSYEYYYHSQGHETDAPRSNSA* |
| Ga0182033_101340541 | 3300016319 | Soil | PRISLLLNKTDTQAGEHFGSYGYYKYYSADGGGDELRASDPA |
| Ga0182037_100175841 | 3300016404 | Soil | ASLSILSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDVLRSGKPA |
| Ga0210407_107552241 | 3300020579 | Soil | ACPRISLLLNKSDTMSGEHFGSYEYYYHSQGRESDAPRSDRPA |
| Ga0210395_103295072 | 3300020582 | Soil | PRITLLLNKSDSLATEHFGSYGYNYHSADSGSDAPRSAEIA |
| Ga0210405_101823951 | 3300021171 | Soil | MEIETSLGMLSACPRISLLLNKSDTLSGEHFGSYEYYYHSQGHETDAPRSNSA |
| Ga0210408_100400754 | 3300021178 | Soil | EAHSTQQAEVEAALSMLSACPQISLLLNKSDTLASEHFGSYGYYYQSPGDGNDELRAANP |
| Ga0210408_110618912 | 3300021178 | Soil | VVEANNTQQGEIEAALGTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSADSGSDERRSAEIA |
| Ga0210388_116417752 | 3300021181 | Soil | LLLNKSEQASAHFGSYGYGYHYPTGESDELRADKPAPA |
| Ga0210387_103184462 | 3300021405 | Soil | SLLLNKSDSLATEHFGSYGYNYHSADSGSDAPRSAEIA |
| Ga0210383_103912681 | 3300021407 | Soil | VFFVKANNTQQGEIEAALSTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSADSGSDEQRSAEIA |
| Ga0210390_108044791 | 3300021474 | Soil | EANNTQQGEIEAALSTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSEDSGSDERHSAEI |
| Ga0210402_101375563 | 3300021478 | Soil | SLSMLSACPRISLLLNKSDTMSGEHFGSYEYYYHSQGRESDAPRSDRPA |
| Ga0210410_105130691 | 3300021479 | Soil | TCPRISLLLNKSDSLATEHFGSYGYNYHSADSGSDEPRSAEIA |
| Ga0210410_108602932 | 3300021479 | Soil | TQQMEIEASLGMLSACPRISLLLNKSDTLSGEHFGSYEYYYHSQGHETDAPRSNPA |
| Ga0210410_113615561 | 3300021479 | Soil | VEAHSTQQAEVEAALSMLSACPQISLLLNKSDTLAGEHFGSYGYYYQSPGDGNDELRSANPV |
| Ga0126371_135163491 | 3300021560 | Tropical Forest Soil | AGLSTLSACPRISLLLNKSDTLASEHFGSYGYYYHSAGGGSDELRSADPA |
| Ga0242656_11351042 | 3300022525 | Soil | VEANNTQQGEIEAALSTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSEDSGSDERHSAEIA |
| Ga0242655_100590171 | 3300022532 | Soil | TQQGEIEAALSTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSADSGSDEQRSAEIA |
| Ga0242670_10792062 | 3300022708 | Soil | CPRISLLLNKSDSLATEHFGSYGYNYHSEDSGSDERHSAEIA |
| Ga0242653_11008482 | 3300022712 | Soil | VEAALGTLSTCSRISLLLNKSDSLATEHFGSYGYNYHSADSGSDERRSAEIA |
| Ga0242654_102001441 | 3300022726 | Soil | GMLSACPRISLLLNKSDTLSGEHFGSYEYYYHSQGHETDAPGSNKPA |
| Ga0242654_104228582 | 3300022726 | Soil | GMLSACPRISLLLNKSDTLSGEHFGSYEYYYHSQGHETDAPRSNSA |
| Ga0228598_10922232 | 3300024227 | Rhizosphere | CPRISLLLNKSELASAHFGSYGYGYHYPSGEGDELRSEKPAPA |
| Ga0207663_101551472 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | IEANNTQQGEIEAALSTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSGGSGSDEPRSAEIA |
| Ga0207663_116461991 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | CPRISLLLNKTDGLATEHFGSYGYNYHSADGGSDEQRWTELA |
| Ga0179587_102110721 | 3300026557 | Vadose Zone Soil | MLSTCPQISLLLNKSDTLASEHFGSYGYYYQSPGDGNDELRSANPA |
| Ga0209038_100588481 | 3300027737 | Bog Forest Soil | PRISLLLNKSELTSAHFGSYGYGYHYPSGEGDDLRAEKPAPA |
| Ga0308309_100415281 | 3300028906 | Soil | TLSTCPRISLLLNKSDSLATEHFGSYGYNYHSADSGSDERRSAEIA |
| Ga0265393_11850632 | 3300030586 | Soil | VVEAHRTQQDEIEAGLSILSSCPRISLLLNKSELASAHFGSYGYGYHYPSGEGDELRSEKPAPA |
| Ga0170824_1095134262 | 3300031231 | Forest Soil | PRVSLLLNKSDTMSGEHFGSYEYYYHSQDRDTDALHSNNPA |
| Ga0170824_1212196861 | 3300031231 | Forest Soil | ALSTLSTCPRISLLLNKSDSLATEHFGSYGYNYHSDSRSDEARSSEIA |
| Ga0318528_102115381 | 3300031561 | Soil | VEAHHTQQVEIEASLSILSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDVLRSGKPA |
| Ga0318542_103007801 | 3300031668 | Soil | SLSMLSACPRISLLLNKSDTTAGEHFGSYKYYYYSQGRESDVLRSDKPA |
| Ga0318542_103388392 | 3300031668 | Soil | SLSMLSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDVLRSGKPA |
| Ga0306917_100558773 | 3300031719 | Soil | QAEIEASLSMLSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDALRSGKPA |
| Ga0318502_109665612 | 3300031747 | Soil | LLLNKTDTQASEHFGSFGYYKYYSAGGGGDEPRATDAT |
| Ga0318543_101994071 | 3300031777 | Soil | HHTQQVEIEASLSMLGACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDALRSSKPA |
| Ga0318552_105200521 | 3300031782 | Soil | SMLSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDALRSSKPA |
| Ga0318550_106109322 | 3300031797 | Soil | HTQLVEIEASLSMLSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDVLRSGKPA |
| Ga0318497_107100631 | 3300031805 | Soil | ACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDVLRSGKPA |
| Ga0318568_109817611 | 3300031819 | Soil | VEAHHTQEVEIEASLSMLSACPRVSLLLNKSDTSAGEHFGSYEYYYYSQGRETNVARSDKPA |
| Ga0318567_102900451 | 3300031821 | Soil | LLNKSELASAHFGSYGYGYHYPSGEGDELRSDKPAPA |
| Ga0310917_100183994 | 3300031833 | Soil | EASLSMLGACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESNALRSSKPA |
| Ga0310917_100815141 | 3300031833 | Soil | ILSTCPRISLLLNKTDAAAGEHFGSYEYYYYSQGRESDVLRSDKPA |
| Ga0306919_103283571 | 3300031879 | Soil | ISLLLNKSDTLAGEHFGSYEYYYYSQGRDTDVARSDKPA |
| Ga0306923_121264351 | 3300031910 | Soil | QVEIEASLSMLSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDALRSSKPA |
| Ga0306921_116246901 | 3300031912 | Soil | LSACPRISLLLNKSDTMAGEHFGSYEYYYHSEGHESDVLRSGKPA |
| Ga0310912_103677232 | 3300031941 | Soil | RISLLLNKSDSLATEHFGSYGYNYHSADSGNDERHSAEIA |
| Ga0310916_116422412 | 3300031942 | Soil | HHTQQVEIEASLSMLSACPRISLLLNKSDTTAGEHFGSYEYYYHSQGRESDVLRSDNPA |
| Ga0310909_101770191 | 3300031947 | Soil | RISLLLNKSDTTAGEHFGSYKYYYYSQGRESDVLRSDKPA |
| Ga0306926_100304656 | 3300031954 | Soil | QQVEIEASLSMLSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDVLRSGKPA |
| Ga0306926_101479261 | 3300031954 | Soil | EIEASLSMLSACPRISLLLNKSDTTAGEHFGSYKYYYYSQGRESDVLRSDKPA |
| Ga0318530_101964262 | 3300031959 | Soil | HHTQQAEIEASLSMLSACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDALRSGKPA |
| Ga0307479_108724191 | 3300031962 | Hardwood Forest Soil | ISLLLNKSDTMAGEHFGSYEYYYYSQGRESDALHSGKPA |
| Ga0306922_106101512 | 3300032001 | Soil | EAHTTQQAEIEAGLSMLSTCPRISLLLNKSDTLATEHFGSYGYGYHSAGGESDELRSAKP |
| Ga0310911_104594792 | 3300032035 | Soil | LSTCPRISLLLNKSDTLATEHFGSYGYGYHSAGGESDELRSAKPA |
| Ga0310911_105994862 | 3300032035 | Soil | LLNKSDTMASEHFGSYEYYYHSQGHESDVLRSGKPA |
| Ga0318570_104819862 | 3300032054 | Soil | ACPRISLLLNKSDTMAGEHFGSYEYYYYSQGRESDALRSGKPA |
| Ga0318510_103248892 | 3300032064 | Soil | VEVESSLSMLSACPRISLLLNKSDTMAGEHFGSYEYYYSHDRDSDALRSGKPA |
| Ga0306924_105914441 | 3300032076 | Soil | LLSTCPRISLLLNKSDTLATEHFGSYGYGYHSAGGESDELRSAKPA |
| Ga0306924_107728191 | 3300032076 | Soil | ACPRISLLLNKSDTSAGEHFGSYEYYYYSQGRETDAGRSDKPA |
| Ga0307470_112757331 | 3300032174 | Hardwood Forest Soil | TQQMEIEASLGMLSACPRISLLLNKSDSLSGEHFGSYEYYYHSEGLETDAPGSTKPA |
| Ga0306920_1043695372 | 3300032261 | Soil | AALSMLSACPRISLLLNKTDTQASEHFGSYGYYKYYSASGGGDELRATDAA |
| Ga0348332_134378032 | 3300032515 | Plant Litter | SSCPRISLLLNKSELASAHFGSYGYGYHYPSGEGDELRSENPAPA |
| Ga0310914_104953561 | 3300033289 | Soil | IEASLSMLSACPRISLLLNKSDTTAGEHFGSYKYYYYSQGRESDVLRSDKPA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |