Metagenome / Metatranscriptome Family F099598

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099598
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	48 residues
Representative Sequence	GTRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK
Number of Associated Samples	93
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.94 %
% of genes near scaffold ends (potentially truncated)	96.12 %
% of genes from short scaffolds (< 2000 bps)	93.20 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.699 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.505 % of family members)
Environment Ontology (ENVO)	Unclassified (27.184 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.718 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 0.00% Coil/Unstructured: 80.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF04417	DUF501	80.58
PF02541	Ppx-GppA	14.56
PF02803	Thiolase_C	0.97
PF00535	Glycos_transf_2	0.97
PF07690	MFS_1	0.97
PF03167	UDG	0.97
PF00578	AhpC-TSA	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1507	Uncharacterized conserved protein, DUF501 family	Function unknown [S]	80.58
COG0248	Exopolyphosphatase/pppGpp-phosphohydrolase	Signal transduction mechanisms [T]	29.13
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.97
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.97
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.97
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.70 %
Unclassified	root	N/A	23.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.70 %
Unclassified	root	N/A	23.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.70 %
Unclassified	root	N/A	23.30 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	74.76 %
Unclassified	root	N/A	23.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	74.76 %
Unclassified	root	N/A	23.30 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	54.37 %
Unclassified	root	N/A	23.30 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	27.18 %
Unclassified	root	N/A	23.30 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.91 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.30 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	13.59 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	4.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.91 %
unclassified Streptosporangiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales	0.97 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.30 %
Thermomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora	5.83 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	4.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.91 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	0.97 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.97 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.30 %
Thermomonospora curvata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	5.83 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.91 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	0.97 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.97 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01DKGL8	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
2199352024\|deeps__Contig_177395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1064	Open in IMG/M
2199352025\|deepsgr__Contig_159680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1490	Open in IMG/M
3300005167\|Ga0066672_10838547	Not Available	575	Open in IMG/M
3300005168\|Ga0066809_10122974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	653	Open in IMG/M
3300005179\|Ga0066684_10942336	Not Available	561	Open in IMG/M
3300005338\|Ga0068868_100913577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	798	Open in IMG/M
3300005339\|Ga0070660_100256345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1427	Open in IMG/M
3300005434\|Ga0070709_10324784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1130	Open in IMG/M
3300005435\|Ga0070714_100173088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1960	Open in IMG/M
3300005435\|Ga0070714_100565660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1089	Open in IMG/M
3300005436\|Ga0070713_100783577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	913	Open in IMG/M
3300005445\|Ga0070708_101468279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	636	Open in IMG/M
3300005467\|Ga0070706_100149267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2182	Open in IMG/M
3300005467\|Ga0070706_101716681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	572	Open in IMG/M
3300005518\|Ga0070699_100285777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1478	Open in IMG/M
3300005548\|Ga0070665_102162503	Not Available	560	Open in IMG/M
3300005598\|Ga0066706_11131868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	597	Open in IMG/M
3300005614\|Ga0068856_102266406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	551	Open in IMG/M
3300005615\|Ga0070702_100031508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2903	Open in IMG/M
3300005841\|Ga0068863_100283865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	1604	Open in IMG/M
3300006028\|Ga0070717_10553771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1041	Open in IMG/M
3300006028\|Ga0070717_11398339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	635	Open in IMG/M
3300006059\|Ga0075017_101458355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	539	Open in IMG/M
3300006176\|Ga0070765_100299700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1485	Open in IMG/M
3300006237\|Ga0097621_101689728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	603	Open in IMG/M
3300006806\|Ga0079220_10351161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	938	Open in IMG/M
3300006914\|Ga0075436_101513664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	510	Open in IMG/M
3300006954\|Ga0079219_10842650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	729	Open in IMG/M
3300006954\|Ga0079219_10888851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	718	Open in IMG/M
3300009101\|Ga0105247_11634901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300010323\|Ga0134086_10198029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	749	Open in IMG/M
3300010366\|Ga0126379_11598059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300010371\|Ga0134125_12123022	Not Available	611	Open in IMG/M
3300010373\|Ga0134128_10845303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1014	Open in IMG/M
3300010396\|Ga0134126_10751948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1105	Open in IMG/M
3300010396\|Ga0134126_11857993	Not Available	660	Open in IMG/M
3300010401\|Ga0134121_12740195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	538	Open in IMG/M
3300010869\|Ga0126359_1716032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	522	Open in IMG/M
3300010877\|Ga0126356_10864293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	602	Open in IMG/M
3300012200\|Ga0137382_10768153	Not Available	692	Open in IMG/M
3300012349\|Ga0137387_10582899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	811	Open in IMG/M
3300012359\|Ga0137385_11375205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	569	Open in IMG/M
3300012474\|Ga0157356_1014461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	584	Open in IMG/M
3300012925\|Ga0137419_11275877	Not Available	617	Open in IMG/M
3300012960\|Ga0164301_10485758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	887	Open in IMG/M
3300012989\|Ga0164305_12098758	Not Available	518	Open in IMG/M
3300014493\|Ga0182016_10772258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	536	Open in IMG/M
3300016270\|Ga0182036_11366582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	592	Open in IMG/M
3300016294\|Ga0182041_11969513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	544	Open in IMG/M
3300016357\|Ga0182032_10333662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1208	Open in IMG/M
3300017937\|Ga0187809_10175374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	751	Open in IMG/M
3300017947\|Ga0187785_10530035	Not Available	592	Open in IMG/M
3300017999\|Ga0187767_10363222	Not Available	513	Open in IMG/M
3300018025\|Ga0187885_10509765	Not Available	536	Open in IMG/M
3300020582\|Ga0210395_10307897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1191	Open in IMG/M
3300021374\|Ga0213881_10575819	Not Available	512	Open in IMG/M
3300021384\|Ga0213876_10766161	Not Available	514	Open in IMG/M
3300021475\|Ga0210392_10370687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1039	Open in IMG/M
3300021475\|Ga0210392_10434515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	961	Open in IMG/M
3300021478\|Ga0210402_10416738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1247	Open in IMG/M
3300021559\|Ga0210409_10563906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1005	Open in IMG/M
3300021559\|Ga0210409_10790447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821	Open in IMG/M
3300024271\|Ga0224564_1112009	Not Available	557	Open in IMG/M
3300024283\|Ga0247670_1021773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1148	Open in IMG/M
3300024288\|Ga0179589_10189004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	896	Open in IMG/M
3300024288\|Ga0179589_10238981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	804	Open in IMG/M
3300025898\|Ga0207692_10357987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	901	Open in IMG/M
3300025908\|Ga0207643_10093812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1753	Open in IMG/M
3300025913\|Ga0207695_10278460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	1567	Open in IMG/M
3300025928\|Ga0207700_11154036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	692	Open in IMG/M
3300025938\|Ga0207704_10235782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1364	Open in IMG/M
3300025939\|Ga0207665_10035970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	3290	Open in IMG/M
3300026067\|Ga0207678_10013774	All Organisms → cellular organisms → Bacteria → Proteobacteria	7105	Open in IMG/M
3300026490\|Ga0257153_1104143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	561	Open in IMG/M
3300026552\|Ga0209577_10778236	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	535	Open in IMG/M
3300027725\|Ga0209178_1275500	Not Available	614	Open in IMG/M
3300027787\|Ga0209074_10193167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	760	Open in IMG/M
3300028716\|Ga0307311_10022302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1584	Open in IMG/M
3300028801\|Ga0302226_10126035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1125	Open in IMG/M
3300030509\|Ga0302183_10161413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	879	Open in IMG/M
3300030524\|Ga0311357_11383640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	600	Open in IMG/M
3300031525\|Ga0302326_11345063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	969	Open in IMG/M
3300031640\|Ga0318555_10674223	Not Available	559	Open in IMG/M
3300031748\|Ga0318492_10675241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300031754\|Ga0307475_11469415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	524	Open in IMG/M
3300031797\|Ga0318550_10636616	Not Available	512	Open in IMG/M
3300031893\|Ga0318536_10439555	Not Available	658	Open in IMG/M
3300031941\|Ga0310912_11020672	Not Available	634	Open in IMG/M
3300031942\|Ga0310916_10720431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	844	Open in IMG/M
3300031946\|Ga0310910_11413561	Not Available	535	Open in IMG/M
3300032009\|Ga0318563_10478580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300032065\|Ga0318513_10365810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	703	Open in IMG/M
3300032205\|Ga0307472_101694628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	624	Open in IMG/M
3300032261\|Ga0306920_102026811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	805	Open in IMG/M
3300032770\|Ga0335085_10087765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4061	Open in IMG/M
3300032770\|Ga0335085_11768506	Not Available	634	Open in IMG/M
3300032783\|Ga0335079_11791188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	598	Open in IMG/M
3300032828\|Ga0335080_10918533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	896	Open in IMG/M
3300032892\|Ga0335081_10850954	Not Available	1082	Open in IMG/M
3300032893\|Ga0335069_10082956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4090	Open in IMG/M
3300032955\|Ga0335076_11743738	Not Available	512	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.38%
Host-Associated	Host-Associated	12.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.50%
Plants	Host-Associated → Plants	12.62%
Aquatic	Environmental → Aquatic	3.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.85%
Peat	Environmental → Terrestrial → Peat	3.88%
Freshwater	Environmental → Aquatic → Freshwater	1.94%
Sediment	Environmental → Aquatic → Sediment	1.94%
Roots	Host-Associated → Plants → Roots	1.94%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.37%
Loam	Environmental → Terrestrial → Soil → Loam	14.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.97%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.94%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.97%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.97%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.97%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012474	Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_3812380	2035918004	Soil	GSQPRISSAQTTKSGPAPWYDKLWRSVQQADASTAK
deeps_03304250	2199352024	Soil	MCFPGTRCYIVEGSQPRSARPRRPRQGPAPWYDKLWRSVQQADAGPESKAK
deepsgr_02647930	2199352025	Soil	SRTSTAQAAKPGPASWYDKLWRSVQQADAGPESKAK
Ga0066672_108385471	3300005167	Soil	TCYIVTGGQSPASTARPSKPGPAPWYDKLWRSVQQADANPESTAK*
Ga0066809_101229742	3300005168	Soil	EQLAREELNMCFPGTRCYIVEGSQPRPGPAQAARQGPAPWYDKLWRSVQQADANPESTAK
Ga0066684_109423361	3300005179	Soil	CYIVEGGQPRISPAQAAAKPGPAPWYDKLWRSVQEADGDPAGAAK*
Ga0068868_1009135773	3300005338	Miscanthus Rhizosphere	YPGTRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADASPESKAK*
Ga0070660_1002563451	3300005339	Corn Rhizosphere	EGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADASPESKAK*
Ga0070709_103247843	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RCYVVEGSQPRLSTAQAAKAGPAPWYDKLWRSVQQADASPAK*
Ga0070714_1001730881	3300005435	Agricultural Soil	GTRCYVVEGSQPRLSTAQAAKAGPAPWYDKLWRSVQQADASPAK*
Ga0070714_1005656603	3300005435	Agricultural Soil	GTRCYVVEGSQPRLSTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK*
Ga0070713_1007835773	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GTRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK*
Ga0070708_1014682792	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	EQLARQELDMCFPGTRCYIVEGSQPRVSTAQAAKPGPAPWYDKLWRSVQQADANPESTAR
Ga0070706_1001492671	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	QELNMCFPGTRCYIVEGGQPRVSTAQAAKAGPAPWYDKLWRSVQQADANPESTAK*
Ga0070706_1017166812	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ELNMCFPGTRCYIVEGSQPRPGTAQAAKQGPAPWYDKLWRSVQQADSNPESTAK*
Ga0070699_1002857773	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	CYIVEGGQPRASTAQVAKQGPASWYDKLWRSVQQADANPESTAK*
Ga0070665_1021625031	3300005548	Switchgrass Rhizosphere	TRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK*
Ga0066706_111318682	3300005598	Soil	PGTRCYIVEGGQPRTSTAQAAKPGPASWYDKLWRSVQQADANPESTAK*
Ga0068856_1022664061	3300005614	Corn Rhizosphere	PRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK*
Ga0070702_1000315085	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	EQLARQELNMCYPGTRCYVVEGSQPRLSTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK
Ga0068863_1002838653	3300005841	Switchgrass Rhizosphere	CYVVEGSQPRLSTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK*
Ga0070717_105537711	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LNMCFPGTRCYIVEGGKPPTSTAQAAKRAPASWYDKLWRSVQQADANPESTAK*
Ga0070717_113983391	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGRESKAK*
Ga0075017_1012141572	3300006059	Watersheds	EGGQPLISTARSPRPGSAPWYDKLWQSVQQADAMPSNPKSAGK*
Ga0075017_1014583552	3300006059	Watersheds	LARQELDMCFPGTRCYIVEGSQPRVSMAQAAKPGPAPWYDKLWRSVQQADANPESTAR*
Ga0070765_1002997001	3300006176	Soil	GTRCYIVEGGQPRTSTAQAAKPGPASWYDKLWRSVQQADANPGSTAK*
Ga0097621_1016897281	3300006237	Miscanthus Rhizosphere	GSQPRVSPAQASEPGPAPWYDKLWRSVQQADASTAK*
Ga0079220_103511611	3300006806	Agricultural Soil	LARQELNMCYPGTRCYVVEGSQPRIGTTQAAKAGPAPWYDKLWRSVQQADAGPESPESKAR*
Ga0075436_1015136641	3300006914	Populus Rhizosphere	IEQLARQELNMCYPGTRCYVVEGSQPRIGTTQAAKAGPAPWYDKLWRSVQQADAGPESPESKAR*
Ga0079219_108426501	3300006954	Agricultural Soil	QLDMCFPRTTCYIVTGGQSPASTARTPRPGPAPWYDKLWRSVQQADASQAK*
Ga0079219_108888511	3300006954	Agricultural Soil	ELNMCFPGTRCYIVEGSQPRPGPAQAAKQGPAPWYDKLWRSVQQADADQESTAK*
Ga0105247_116349012	3300009101	Switchgrass Rhizosphere	LNMCYPGTRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK*
Ga0134086_101980292	3300010323	Grasslands Soil	NMCYPGTRCYVVEGSQPRLSTAQAAKAGPAPWYDKLWRSVQQADTGPESKAK*
Ga0126379_115980593	3300010366	Tropical Forest Soil	ASTAQAAKPGPAPWYDKLWRSVQQADANRESAAK*
Ga0134125_121230222	3300010371	Terrestrial Soil	LNMCYPGTRCYVVEGSQPRIGTAQAAKVGPASWYDKLWRSVQQADAGPESKAK*
Ga0134128_108453033	3300010373	Terrestrial Soil	EGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK*
Ga0134126_107519483	3300010396	Terrestrial Soil	CYPGTRCYVVEGSQPRLSTAQAAKAGPAPWYDKLWRSVQQADASPAK*
Ga0134126_118579932	3300010396	Terrestrial Soil	TRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGRESKAK*
Ga0134121_127401951	3300010401	Terrestrial Soil	SQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK*
Ga0126359_17160321	3300010869	Boreal Forest Soil	MCFPRTTCYIVTGGQRQAGTAARAAKAGPAPWYDKLWQSVQQADANPKIAAK*
Ga0126356_108642931	3300010877	Boreal Forest Soil	TCYIVTGGQRQASTAARAAKAGPAPWYDKLWQSVQQADANPKTPAK*
Ga0137382_107681531	3300012200	Vadose Zone Soil	TRCYIVAGGRPRASTAQAAKAGSAPWYDKLWRSVQQADANPESTAK*
Ga0137387_105828991	3300012349	Vadose Zone Soil	VEGGQPRAGTAQAAKQGPAPWYDKLWRSVQQADANPESTAK*
Ga0137385_113752051	3300012359	Vadose Zone Soil	REELNMCFPGTRCYIVEGGQPRAGTAQAAKQGPAPWYDKLWRSVQQADANPESTAK*
Ga0157356_10144611	3300012474	Unplanted Soil	EELNMCFPGTRCYIVEGGHPRASTAQAAKQGPAPWYDKLWRSVQQADANPESTAK*
Ga0137419_112758771	3300012925	Vadose Zone Soil	MCFPGTRCYIVEGGQPRAGTAQAAKQGPAPWYDKLWRSVQQADANPESTAK*
Ga0164301_104857583	3300012960	Soil	ELNMCYPGTRCYVVEGSQPRIGTVQAAKAGPAPWYDKLWRSVQQADAGPESKAK*
Ga0164305_120987581	3300012989	Soil	NMCFPGTRCYIVEGGQRQSGATAQAATPGPAPWYDKLWHSVQQADGSAAR*
Ga0182016_107722581	3300014493	Bog	MCFPGTKCYIVEGGQPLVAAAPSSRPGLPSWYDKLWQSVQQADASRAK*
Ga0182036_113665821	3300016270	Soil	MCFPGTRCYIVEGSRPQVSPAQAAKAGPAPWYDKLWRSVQQADAGPESAAK
Ga0182041_119695132	3300016294	Soil	GSQPRVSPAQAAKSGPAPWYDKLWRSVQQADASTAK
Ga0182032_103336623	3300016357	Soil	GDQPQASTAQAAKPGPAPWYDKLWRSVQQADANPESAAK
Ga0187809_101753741	3300017937	Freshwater Sediment	IEQLARQELDMCFPGTRCYIVEGSLPSVSLAQAAERGPAPWYDKLWRSVQQADAGPESKA
Ga0187785_105300352	3300017947	Tropical Peatland	ELDMCFPGTRCYIAEGSQPRLGPAPVVKAGPAPWYDKLWRSVQQADTGPQSAAK
Ga0187767_103632222	3300017999	Tropical Peatland	EGGQPVIGSTHPPRPGPAPWYDKLWRSVQQADANPKIPAK
Ga0187885_105097652	3300018025	Peatland	MCFPGTKCYVVEGGQPLAAAAPSSQPGLPPWYDKLWRSVQQADASPAK
Ga0210395_103078971	3300020582	Soil	TRCYIVEGGQPRTSTAQAAKPGPASWYDKLWRSVQQADANPESKAK
Ga0213881_105758192	3300021374	Exposed Rock	SGQQAPGAARAARPGPAPWYDKLWRSVQQADAGPAR
Ga0213876_107661611	3300021384	Plant Roots	GTRCYIVEGSGQQAPGAARAARPGPAPWYDKLWRSVQQADAGPAR
Ga0210392_103706871	3300021475	Soil	LDMCFPGTRCYIVEGSQPRVSTAQAAKPGPAPWYDKLWRSVQQADANPESTAR
Ga0210392_104345153	3300021475	Soil	MCFPGAKCYIVEGGQPLAGPARSPRPGPAPWYDKLWRSVQQADANPRTPAK
Ga0210402_104167381	3300021478	Soil	RTSPAQAAKPGPASWYDKLWRSVQQADANPESTAK
Ga0210409_105639063	3300021559	Soil	IVEGSQPRVSTAQAAKPGPAPWYDKLWRSVQQADANPESTAR
Ga0210409_107904473	3300021559	Soil	QPRTGTAQAAKPGPASWYDKLWRSVQQADANPESTAK
Ga0224564_11120092	3300024271	Soil	TQCYIVEGGQSLISTAQAARRGPAPWYDKLWQSVQQADANPGTSKSPGK
Ga0247670_10217733	3300024283	Soil	SQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK
Ga0179589_101890043	3300024288	Vadose Zone Soil	EQLARQELNMCFPGTRCYIVEGGQPRASAAQAAKQGPAPWYDKLWRSVQQADANPESTAK
Ga0179589_102389811	3300024288	Vadose Zone Soil	EGGQPRTSTAQAAKPGSASWYDKLWRSVQQADANPESTAK
Ga0207692_103579873	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	YPGTRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADASPESKAK
Ga0207643_100938121	3300025908	Miscanthus Rhizosphere	ARQELNMCYPGTRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK
Ga0207695_102784603	3300025913	Corn Rhizosphere	LNMCYPGTRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADASPESKAK
Ga0207700_111540361	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VEGSQPRLSTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK
Ga0207704_102357823	3300025938	Miscanthus Rhizosphere	GTRCYIVEGGQPRPSPAQAAKPGPASWYDKLWRSVQQADANPESTPK
Ga0207665_100359705	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	RQELNMCFPGTRCYVVEGSQPRLSTAQAAKAGPAPWYDKLWRSVQQADAGPESKAK
Ga0207678_100137742	3300026067	Corn Rhizosphere	MCFPRTTCYIVTGGQTQAGPAARAAKAGPAPWYDKLWRSVQQADAGPESKAK
Ga0257153_11041432	3300026490	Soil	GTRCYIVEGGQPRASTAQAAKAGPAPWYDKLWRSVQQADANAESTAK
Ga0209577_107782362	3300026552	Soil	PRISPAQAAAKPGPAPWYDKLWRSVQEADGDPAGAAK
Ga0209178_12755002	3300027725	Agricultural Soil	YVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADAGPESPESKAR
Ga0209074_101931671	3300027787	Agricultural Soil	IEQLARQELNMCFPGTRCYIVEGSQPRPGTAQAAKHGPAPWYDKLWRSVQQADANPESTA
Ga0307311_100223021	3300028716	Soil	RQELNMCFPGTRCYIVEGGQPRASTAQAARQGPAPWYDKLWRSVQQADAGPESKAK
Ga0302226_101260351	3300028801	Palsa	CFPGTKCYIVEGGQPLVAAAPSSRPGLPSWYDKLWQSVQQADASRAK
Ga0302183_101614131	3300030509	Palsa	ARQELDMCFPGTKCYIVEGGQPLVAAAPSSRPGPPSWYDKLWQSVQQADASRAK
Ga0311357_113836402	3300030524	Palsa	RQELDMCFPGTKCYIVEGGQPVVAAAPSSRPGLPPWYDKLWRSVQQADASPAK
Ga0302326_113450633	3300031525	Palsa	YIVEGRQTSISTARTPKPGPAPWYSKLWQSVQQADASPAK
Ga0318555_106742231	3300031640	Soil	CYIVEGSQPRPGPAPAAKTGPAPWYDKLWRSVQQADGGRESMAK
Ga0318492_106752411	3300031748	Soil	FPGTQCYIVEGGQPVVSPARPPRPGPAPWYDKLWRSVQQADANPKIPSK
Ga0307475_114694151	3300031754	Hardwood Forest Soil	LNMCFPGTRCYIVEGGQPRTGTAQAAKPGPASWYDKLWRSVQQADANPESTAK
Ga0318550_106366161	3300031797	Soil	EGSQPQVSPAQPARPGPAPWYDKLWRSVQQADAGPESAAK
Ga0318536_104395552	3300031893	Soil	IVEGSQPQVSPAQPARPGPAPWYDKLWRSVQQADASSASTAK
Ga0310912_110206721	3300031941	Soil	CYIVEGSQPQVSPAQPARPGPAPWYDKLWRSVQQADASPASTAK
Ga0310916_107204313	3300031942	Soil	EGDQPQASTAQAAKPGPAPWYDKLWRSVQQADANPESAAK
Ga0310910_114135611	3300031946	Soil	FPGTRCYIVEGSRPQVSPAQAAKAGPAPWYDKLWRSVQQADASSASTAK
Ga0318563_104785802	3300032009	Soil	QLARQELDMCFPGTQCYIVEGSQPQVSPAQPARPGPAPWYDKLWRSVQQADASSASTAK
Ga0318513_103658101	3300032065	Soil	LARQELDMCFPGTQCYIVEGSQPQVSPAQPARPGPAPWYDKLWRSVQQADASSASTAK
Ga0307472_1016946281	3300032205	Hardwood Forest Soil	AQQELNMCYPGTRCYVVEGSQPRIGTAQAAKAGPAPWYDKLWRSVQQADASPESKAK
Ga0306920_1020268113	3300032261	Soil	QVSPAQAAKAGPAPWYDKLWRSVQQADAGPESAAK
Ga0335085_100877655	3300032770	Soil	QELDMCLPGTRCYIVEGSQPRPGPAPAVKAGPAPWYDKLWRSVQRADAGRESTAK
Ga0335085_117685062	3300032770	Soil	QELDMCLPGTRCYIVEGSQPRPGPAPAAKAGPAPWYDKLWRSVQRADAGRESTAK
Ga0335079_117911882	3300032783	Soil	CYIVTGGQPLTSTARTPRPGPAPWYDKLWRSVQQADAAPKSPAK
Ga0335080_109185333	3300032828	Soil	QPVIGATHPARPGPAPWYDKLWRSVQRADANPKIPAK
Ga0335081_108509541	3300032892	Soil	GGQPVISASDPPRPGPAPWYDKLWRSVQQADANPEIPAK
Ga0335069_100829561	3300032893	Soil	IVEGSQPQVSPTQPAKSGPAPWYDKLWRSVQQADASPASTAK
Ga0335076_117437382	3300032955	Soil	QQARQELDMCFPGTQCYIVEGGQPVIGSTPAPRPGPAPWYDKLWRSVQQADANPKLPAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099598

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences