NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099593

Metagenome Family F099593

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099593
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 51 residues
Representative Sequence MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLVRGA
Number of Associated Samples 79
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 49.51 %
% of genes near scaffold ends (potentially truncated) 34.95 %
% of genes from short scaffolds (< 2000 bps) 83.50 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (57.282 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(39.806 % of family members)
Environment Ontology (ENVO) Unclassified
(50.485 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(46.602 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 61.25%    β-sheet: 0.00%    Coil/Unstructured: 38.75%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00534Glycos_transf_1 19.42
PF00501AMP-binding 11.65
PF13439Glyco_transf_4 5.83
PF14027Questin_oxidase 3.88
PF13524Glyco_trans_1_2 3.88
PF09055Sod_Ni 3.88
PF00877NLPC_P60 1.94
PF00717Peptidase_S24 1.94
PF02885Glycos_trans_3N 0.97
PF12697Abhydrolase_6 0.97
PF04542Sigma70_r2 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0791Cell wall-associated hydrolase, NlpC_P60 familyCell wall/membrane/envelope biogenesis [M] 1.94
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.97
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.97
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.97
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A57.28 %
All OrganismsrootAll Organisms42.72 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001356|JGI12269J14319_10062714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus2106Open in IMG/M
3300001471|JGI12712J15308_10169051Not Available569Open in IMG/M
3300001593|JGI12635J15846_10738901Not Available566Open in IMG/M
3300003505|JGIcombinedJ51221_10088079Not Available1225Open in IMG/M
3300003505|JGIcombinedJ51221_10126167Not Available1028Open in IMG/M
3300004091|Ga0062387_100494537Not Available852Open in IMG/M
3300004091|Ga0062387_101643517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae520Open in IMG/M
3300004092|Ga0062389_102919717Not Available639Open in IMG/M
3300004635|Ga0062388_101185375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae755Open in IMG/M
3300005534|Ga0070735_10478407Not Available742Open in IMG/M
3300005538|Ga0070731_10700975Not Available673Open in IMG/M
3300005591|Ga0070761_10003361All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia9612Open in IMG/M
3300005602|Ga0070762_10254287All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus1093Open in IMG/M
3300005602|Ga0070762_10585030All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus740Open in IMG/M
3300005764|Ga0066903_105154977Not Available692Open in IMG/M
3300005764|Ga0066903_106956417Not Available587Open in IMG/M
3300006028|Ga0070717_11025617Not Available751Open in IMG/M
3300006176|Ga0070765_100456653All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus1197Open in IMG/M
3300006176|Ga0070765_101565381All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus620Open in IMG/M
3300006176|Ga0070765_102144507Not Available522Open in IMG/M
3300014201|Ga0181537_10069818Not Available2383Open in IMG/M
3300014654|Ga0181525_10258186Not Available951Open in IMG/M
3300016294|Ga0182041_11116433Not Available717Open in IMG/M
3300016294|Ga0182041_11162958Not Available703Open in IMG/M
3300016294|Ga0182041_11597568All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia602Open in IMG/M
3300016357|Ga0182032_11285161Not Available631Open in IMG/M
3300016371|Ga0182034_10274806All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1339Open in IMG/M
3300017821|Ga0187812_1133565Not Available803Open in IMG/M
3300017821|Ga0187812_1144714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria766Open in IMG/M
3300017924|Ga0187820_1004366All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3280Open in IMG/M
3300017926|Ga0187807_1093957All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces shenzhenensis941Open in IMG/M
3300017932|Ga0187814_10053607Not Available1485Open in IMG/M
3300017932|Ga0187814_10086513All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1152Open in IMG/M
3300017995|Ga0187816_10134524Not Available1067Open in IMG/M
3300018007|Ga0187805_10561558Not Available538Open in IMG/M
3300018012|Ga0187810_10197521Not Available817Open in IMG/M
3300018058|Ga0187766_10057111Not Available2305Open in IMG/M
3300018085|Ga0187772_10144250All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces shenzhenensis1569Open in IMG/M
3300021402|Ga0210385_10010763All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales5583Open in IMG/M
3300022840|Ga0224549_1000400All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales5976Open in IMG/M
3300027545|Ga0209008_1012160Not Available2037Open in IMG/M
3300027575|Ga0209525_1050708Not Available1011Open in IMG/M
3300027692|Ga0209530_1119804Not Available744Open in IMG/M
3300027696|Ga0208696_1224545Not Available589Open in IMG/M
3300027853|Ga0209274_10008904All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales4530Open in IMG/M
3300028781|Ga0302223_10091144Not Available1012Open in IMG/M
3300028877|Ga0302235_10142824All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus1071Open in IMG/M
3300028879|Ga0302229_10377484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus632Open in IMG/M
3300029943|Ga0311340_10467362Not Available1137Open in IMG/M
3300031027|Ga0302308_10220285All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1206Open in IMG/M
3300031543|Ga0318516_10498764Not Available699Open in IMG/M
3300031543|Ga0318516_10540092Not Available668Open in IMG/M
3300031543|Ga0318516_10879360Not Available505Open in IMG/M
3300031544|Ga0318534_10035726All Organisms → cellular organisms → Bacteria2736Open in IMG/M
3300031544|Ga0318534_10831677Not Available518Open in IMG/M
3300031546|Ga0318538_10043409All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2167Open in IMG/M
3300031549|Ga0318571_10404523Not Available533Open in IMG/M
3300031561|Ga0318528_10600913Not Available590Open in IMG/M
3300031564|Ga0318573_10526225Not Available637Open in IMG/M
3300031572|Ga0318515_10498297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus650Open in IMG/M
3300031713|Ga0318496_10119898Not Available1424Open in IMG/M
3300031713|Ga0318496_10288239All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus906Open in IMG/M
3300031719|Ga0306917_10059550All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2603Open in IMG/M
3300031723|Ga0318493_10270310All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa912Open in IMG/M
3300031736|Ga0318501_10311436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia842Open in IMG/M
3300031751|Ga0318494_10106419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1551Open in IMG/M
3300031764|Ga0318535_10179818All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus946Open in IMG/M
3300031765|Ga0318554_10047169All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2351Open in IMG/M
3300031765|Ga0318554_10413901Not Available765Open in IMG/M
3300031769|Ga0318526_10254257Not Available719Open in IMG/M
3300031779|Ga0318566_10625843Not Available523Open in IMG/M
3300031795|Ga0318557_10328603Not Available702Open in IMG/M
3300031795|Ga0318557_10354596Not Available674Open in IMG/M
3300031796|Ga0318576_10583001Not Available527Open in IMG/M
3300031799|Ga0318565_10523151Not Available572Open in IMG/M
3300031846|Ga0318512_10128007Not Available1212Open in IMG/M
3300031890|Ga0306925_12091890Not Available531Open in IMG/M
3300031896|Ga0318551_10064623Not Available1880Open in IMG/M
3300031896|Ga0318551_10633638Not Available618Open in IMG/M
3300031896|Ga0318551_10904046Not Available515Open in IMG/M
3300031897|Ga0318520_10259726All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1039Open in IMG/M
3300031910|Ga0306923_12173894Not Available557Open in IMG/M
3300031912|Ga0306921_11617396Not Available703Open in IMG/M
3300031912|Ga0306921_11804762All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa658Open in IMG/M
3300032009|Ga0318563_10585081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia602Open in IMG/M
3300032009|Ga0318563_10798566Not Available506Open in IMG/M
3300032010|Ga0318569_10541230Not Available542Open in IMG/M
3300032025|Ga0318507_10227321All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → Acidothermaceae → Acidothermus → Acidothermus cellulolyticus808Open in IMG/M
3300032043|Ga0318556_10610523Not Available569Open in IMG/M
3300032052|Ga0318506_10186636All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia914Open in IMG/M
3300032055|Ga0318575_10560952All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia579Open in IMG/M
3300032060|Ga0318505_10357017All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa691Open in IMG/M
3300032089|Ga0318525_10065077Not Available1826Open in IMG/M
3300032091|Ga0318577_10293448All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria778Open in IMG/M
3300032261|Ga0306920_101865652All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia846Open in IMG/M
3300032261|Ga0306920_101931782Not Available829Open in IMG/M
3300032805|Ga0335078_10435197Not Available1709Open in IMG/M
3300032895|Ga0335074_10009502All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia13581Open in IMG/M
3300032895|Ga0335074_10015089All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia10844Open in IMG/M
3300032895|Ga0335074_10036966All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6817Open in IMG/M
3300032896|Ga0335075_10411789Not Available1431Open in IMG/M
3300032896|Ga0335075_11203853Not Available657Open in IMG/M
3300033290|Ga0318519_10024973All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2739Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil39.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.65%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment8.74%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.80%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil6.80%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil5.83%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.85%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.88%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.94%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.94%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.94%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.94%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.97%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300017821Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300022840Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5EnvironmentalOpen in IMG/M
3300027545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027575Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300028781Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3EnvironmentalOpen in IMG/M
3300028877Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3EnvironmentalOpen in IMG/M
3300028879Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3EnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300031027Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031549Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1006271433300001356Peatlands SoilMNTYLPQSLVWDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGRRIARGA*
JGI12712J15308_1016905123300001471Forest SoilMDRYMPQSLVWDHIRESRQQAAAARQAKVARGARRRSGLHARRLGHRPVRGA*
JGI12635J15846_1073890113300001593Forest SoilMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTWRAGHRLTRGA*
JGIcombinedJ51221_1008807923300003505Forest SoilMNSYVPQSLVWDHIKESRQQAAAARKASAARGARRRSGTHARRAGHRLARGA*
JGIcombinedJ51221_1012616723300003505Forest SoilMNTYLAQNLAWDHIRESRQQAAAARKATSARNGHRRAAHARRATHRILRSA*
Ga0062387_10049453723300004091Bog Forest SoilMNSYLPQSLVWDHIRQSRQQAAAARKVSAARSARRHSGTHPRRAGHRLARGA*
Ga0062387_10164351713300004091Bog Forest SoilLAWDHIRESRQHAAAARKASAVRSTRRRSGTHARRVSHRLARGA*
Ga0062389_10291971723300004092Bog Forest SoilMNSYLPQSLIWDHIRESRRQAAAARKASAARSAQRRSGIHARLAGHRLVRGA*
Ga0062388_10118537523300004635Bog Forest SoilMNSYLPQSLAWDHIRESRQHAAAARKASAVRSTRRRSGTHARRVSHRLARGA*
Ga0070735_1047840733300005534Surface SoilMDRYMPQSLVWDHIRESRQQAAAARQAKVARGVRRRSGLHARRLGHRPVRGD*
Ga0070731_1070097513300005538Surface SoilMDRYMPQSLVWDHIRESRQQAAAARQAKVARGVRRRSGLHARRLGHRPVRGA*
Ga0070761_10003361103300005591SoilMNTYLPQSLVWDHIRESRQQAATARKASAARSAQSRSGAARRTGAHALRILRGA*
Ga0070762_1025428733300005602SoilMNSYLPQSLVWDHIRESRQQAAAARKASAARSARRRSGTHARRVGHRLARGA*
Ga0070762_1058503013300005602SoilQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLARGA*
Ga0066903_10515497723300005764Tropical Forest SoilMNSYLPQSLVWDHIRESRLQAAAARQAMAARGAQRRIRTAARRAGHRLAGGA*
Ga0066903_10695641713300005764Tropical Forest SoilMNSYLLQSLAWGHIRESRQQADEARQATAARAARRAATRARRADHRLVWGA*
Ga0070717_1102561723300006028Corn, Switchgrass And Miscanthus RhizosphereMPQSLVWDHIRESRRQAATLRQARAARSARRLSGLHARRSGHRLVRGA*
Ga0070765_10045665333300006176SoilMNSYLPQSLVWDHIRESRHHAAAARKASAARSARRRSGTHARRVGHRLARAA*
Ga0070765_10156538113300006176SoilEHINASRQQAAAARRASAARGAQRKAGRHVARRAGHWLVRSA*
Ga0070765_10214450713300006176SoilMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLARGA*
Ga0181537_1006981823300014201BogMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSATHTRRADHRLMRGA*
Ga0181525_1025818623300014654BogMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSATHTRRAGHRLTRGV*
Ga0182041_1111643313300016294SoilMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAGHRLVRGA
Ga0182041_1116295823300016294SoilMNSYLPKSLIWDHIRESRQQAAEARKATAVRGGHRAETRARRADHRLVREA
Ga0182041_1159756833300016294SoilTARLDAMNTYLPHSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLAGGA
Ga0182032_1128516113300016357SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAQEA
Ga0182034_1027480613300016371SoilLGGMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAREA
Ga0187812_113356533300017821Freshwater SedimentMNTYLPQSLVWDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGHRIARGA
Ga0187812_114471423300017821Freshwater SedimentMNTYLTQSLVWDHIRESRQQAAAARKASAARVGQRRAVARARRAGHRPVG
Ga0187820_100436643300017924Freshwater SedimentMNTYLPQSLVWDHIRESRQQAAAARRASAARNAWRRAGGHARRVGHQLGRRA
Ga0187807_109395713300017926Freshwater SedimentMNTYLTQSLVWDHIRESRQQAAAARQASAARVGHRHAVARTRRAGHRTVRGAFG
Ga0187814_1005360723300017932Freshwater SedimentMNTYLPQSLVRDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGHRIARGA
Ga0187814_1008651323300017932Freshwater SedimentMNTYLTQSLVWDHIRESRQQAAAARQASAARVGHRRAVARTRRAGHRMVRGAFG
Ga0187816_1013452413300017995Freshwater SedimentMNTYLTQSLVWDHIRESRQQAAAARQASAARGAQRRTGSHARRAGKRLVRGA
Ga0187805_1056155823300018007Freshwater SedimentMNTYLPQSLVRDHIRESRQQAAAARKASAARGARRRAGTHARRA
Ga0187810_1019752113300018012Freshwater SedimentMNTYLPQSLVRDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGHRTVRGAFG
Ga0187766_1005711123300018058Tropical PeatlandMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLVRGA
Ga0187772_1014425013300018085Tropical PeatlandMNTYLSQNLVWDHIRESRQQAAAVRRASVARGARRRAGAHARRSGHRMARGA
Ga0210385_1001076323300021402SoilMNTYLAQNLAWDHIRESRQQAAAARKATSARNGHRRAAHARRATHRILRSA
Ga0224549_100040033300022840SoilMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLMRAA
Ga0209008_101216033300027545Forest SoilMNSYLPQSLAWDHIMESRRQAAAARKASAARSAQRRSGIHARRAAHRLVRGA
Ga0209525_105070823300027575Forest SoilMNSYLPQSLAWDHIMESRRQAAAARKASAARSAQRRSGIHARRAGHRLLRGA
Ga0209530_111980423300027692Forest SoilMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTWRAGHRLTRGA
Ga0208696_122454513300027696Peatlands SoilMNTYLPQSLVWDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGRRIARGA
Ga0209274_1000890433300027853SoilMNTYLPQSLVWDHIRESRQQAATARKASAARSAQSRSGAARRTGAHALRILRGA
Ga0302223_1009114423300028781PalsaMNSYLPQTLVWDHIRESRQQAAAARKVSAASSARRQSGTHTRRAGHRLMRAA
Ga0302235_1014282433300028877PalsaMNNYLPESLVWDHIRESRQQAAAAHKVSAARTARRQSGTHIRRAGHRLTRGA
Ga0302229_1037748433300028879PalsaLPESLVWDHIRESRQQAAAAHKVSAARTARRQSGTHIRRAGHRLTRGA
Ga0311340_1046736233300029943PalsaMNNYLPQSLVWDHIRESRQQAAAAHKVSAARTARRQSGTHIRRAGHRLTRGA
Ga0302308_1022028513300031027PalsaYLPQSLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLMRAA
Ga0318516_1049876433300031543SoilSYLPQSLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA
Ga0318516_1054009223300031543SoilVKLKGMNSYLPQSLVWDHIRESRLQAAAARKAMAARGTQRRVRTAARRAGHRLAGGA
Ga0318516_1087936023300031543SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAREA
Ga0318534_1003572643300031544SoilMNSYLPKSLIWDHIRESRQQAAEARKATAARGAQRRAGIRARRAEHRGA
Ga0318534_1083167713300031544SoilMNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA
Ga0318538_1004340933300031546SoilMNSYLPQSLVTDHIRESRQQAAEARTATAMRRARRAGHRLVRGA
Ga0318571_1040452313300031549SoilMSSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRGA
Ga0318528_1060091323300031561SoilMNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRGA
Ga0318573_1052622513300031564SoilMNSYLPQSLIWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRG
Ga0318515_1049829733300031572SoilNRDFLRRGNRGLTVKLKGMNSYLPQSLVWDHIRESRLQAAAARKAMAARGAQRRVRTAARRAGHRLVGGA
Ga0318496_1011989823300031713SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLARGA
Ga0318496_1028823933300031713SoilRGLTVKLKGMNSYLPQSLVWDHIRESRLQAAAARKAMAARGTQRRVRTAARRAGHRLAGG
Ga0306917_1005955013300031719SoilMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAGNRLVRG
Ga0318493_1027031013300031723SoilLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA
Ga0318501_1031143613300031736SoilMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAG
Ga0318494_1010641933300031751SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARR
Ga0318535_1017981833300031764SoilVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLARGA
Ga0318554_1004716953300031765SoilGMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGTRARRAGHRLVRGA
Ga0318554_1041390113300031765SoilMNSYLPQSLVWDHIRESRQQAAETRKATAARGARRAETRARRADHRLVRGA
Ga0318526_1025425723300031769SoilMNTYLPQSLVSDHIRESRQQAAAARQARAARGARRRAGTYARRVGHRLVRGA
Ga0318566_1062584313300031779SoilTQGMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGTRARRAGHRLVRGA
Ga0318557_1032860313300031795SoilMNTYLPHSLVSDHIRESRQQAAAARQASAARGARRRAGTHAR
Ga0318557_1035459623300031795SoilMNSYLPKSLIWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRGA
Ga0318576_1058300113300031796SoilMNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRA
Ga0318565_1052315133300031799SoilMNSYLPQSLIWDHIRESRLQAAAARKAAAARGTQRRTGTHARRAGHRLARGA
Ga0318512_1012800713300031846SoilMNTYLPHSLVSDHIRESRQQAAAARQASAARGARRRAGTHARRVGYRL
Ga0306925_1209189023300031890SoilMNRYLPQSLVWDHIRESRQQAAEARQATAVRGGHRAETRARRADHRLMREA
Ga0318551_1006462323300031896SoilMNTYLPHSLVSDHIRESRQQAAAARQASAARGARRRAGTHARRVGYRLVRGA
Ga0318551_1063363813300031896SoilMNIYLLQSLVSDHIRESRQQAAAVRQASAARGAQRRAGTHARRAGHRLARGA
Ga0318551_1090404613300031896SoilSYRNTQGMNSYLPQSLIWDHIRESRQEAAEARKAAAARGARRRVGIRARRAAHRGA
Ga0318520_1025972623300031897SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTQARRAGHRLARGA
Ga0306923_1217389423300031910SoilMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAGNRL
Ga0306921_1161739623300031912SoilVRLEDMNSYLAHSLVSDHIRQSRQQAAAARQASAARGARRRTRTHV
Ga0306921_1180476233300031912SoilSLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA
Ga0318563_1058508133300032009SoilPGSYRETQGMNSYLPQSLVWDHIRESRQQAAEARKATAARGAQRRAGIRARRAEHRGA
Ga0318563_1079856623300032009SoilMNIYLLQSLVSDHIRESRQQAAAVRQASAARGAQRRAGTHARRAGHRLGRGA
Ga0318569_1054123023300032010SoilRQNRAFLRRGSRGLTARLGGMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTQARRAGHRLARGA
Ga0318507_1022732133300032025SoilGGMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAREA
Ga0318556_1061052313300032043SoilLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTQARRAGHRLARGA
Ga0318506_1018663633300032052SoilIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLARGA
Ga0318575_1056095213300032055SoilLPKSLIWDHIRESRQQAAEARKATAARGAQRRAGIRARRAEHRGA
Ga0318505_1035701733300032060SoilGMNSYLPQSLVTDHIRESRQQAAEARTATAMRRARRAGTRARRAGHRLVRGA
Ga0318525_1006507733300032089SoilVSDHIRESRQQAAAARQASAARGARRRAGTHARRVGYRLVRGA
Ga0318577_1029344813300032091SoilMNSYLPQSLIWDHIRESRLQAAAARKAAAARGTQRRTGTHARRAGH
Ga0306920_10186565213300032261SoilPQSLVWDHIRESRQQAAEARKATAARGVRRAETRARRAEHRLVRGA
Ga0306920_10193178213300032261SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLAREA
Ga0335078_1043519723300032805SoilMNTYLPQSLVWEHIRETRQQAAAARQGIAARSARRRTGTRARRPGHRLARGA
Ga0335074_1000950283300032895SoilMNTYLAQNLAWDHIRESRQQAAAARKANSARNGHRRAAHARRATHRILRSA
Ga0335074_1001508963300032895SoilMNTYVPQSLLWDHIRESRQQAAADRKASAARGTQRRAGIHARRPGHRLVRGA
Ga0335074_1003696653300032895SoilMNAYLAQNLAWDHIRESRQQAAAARKANSVRATHRRAGAHARRASLRILRSA
Ga0335075_1041178923300032896SoilMNAYLTESLVWDHIRESRQQAAAARKASAARGVQHRPKAHARRAGLWIARSA
Ga0335075_1120385323300032896SoilMNAYLAQNLAWDHIRESRQQAAAALKANSVRAAHRRAGAHARRASLRILRSA
Ga0318519_1002497353300033290SoilMNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRAEHRLVRGA


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