Basic Information | |
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Family ID | F099593 |
Family Type | Metagenome |
Number of Sequences | 103 |
Average Sequence Length | 51 residues |
Representative Sequence | MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLVRGA |
Number of Associated Samples | 79 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 49.51 % |
% of genes near scaffold ends (potentially truncated) | 34.95 % |
% of genes from short scaffolds (< 2000 bps) | 83.50 % |
Associated GOLD sequencing projects | 76 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.41 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (57.282 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.806 % of family members) |
Environment Ontology (ENVO) | Unclassified (50.485 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (46.602 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 61.25% β-sheet: 0.00% Coil/Unstructured: 38.75% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.41 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Bog Forest Soil Bog Freshwater Sediment Surface Soil Peatlands Soil Soil Soil Soil Tropical Peatland Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Palsa |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12269J14319_100627143 | 3300001356 | Peatlands Soil | MNTYLPQSLVWDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGRRIARGA* |
JGI12712J15308_101690512 | 3300001471 | Forest Soil | MDRYMPQSLVWDHIRESRQQAAAARQAKVARGARRRSGLHARRLGHRPVRGA* |
JGI12635J15846_107389011 | 3300001593 | Forest Soil | MNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTWRAGHRLTRGA* |
JGIcombinedJ51221_100880792 | 3300003505 | Forest Soil | MNSYVPQSLVWDHIKESRQQAAAARKASAARGARRRSGTHARRAGHRLARGA* |
JGIcombinedJ51221_101261672 | 3300003505 | Forest Soil | MNTYLAQNLAWDHIRESRQQAAAARKATSARNGHRRAAHARRATHRILRSA* |
Ga0062387_1004945372 | 3300004091 | Bog Forest Soil | MNSYLPQSLVWDHIRQSRQQAAAARKVSAARSARRHSGTHPRRAGHRLARGA* |
Ga0062387_1016435171 | 3300004091 | Bog Forest Soil | LAWDHIRESRQHAAAARKASAVRSTRRRSGTHARRVSHRLARGA* |
Ga0062389_1029197172 | 3300004092 | Bog Forest Soil | MNSYLPQSLIWDHIRESRRQAAAARKASAARSAQRRSGIHARLAGHRLVRGA* |
Ga0062388_1011853752 | 3300004635 | Bog Forest Soil | MNSYLPQSLAWDHIRESRQHAAAARKASAVRSTRRRSGTHARRVSHRLARGA* |
Ga0070735_104784073 | 3300005534 | Surface Soil | MDRYMPQSLVWDHIRESRQQAAAARQAKVARGVRRRSGLHARRLGHRPVRGD* |
Ga0070731_107009751 | 3300005538 | Surface Soil | MDRYMPQSLVWDHIRESRQQAAAARQAKVARGVRRRSGLHARRLGHRPVRGA* |
Ga0070761_1000336110 | 3300005591 | Soil | MNTYLPQSLVWDHIRESRQQAATARKASAARSAQSRSGAARRTGAHALRILRGA* |
Ga0070762_102542873 | 3300005602 | Soil | MNSYLPQSLVWDHIRESRQQAAAARKASAARSARRRSGTHARRVGHRLARGA* |
Ga0070762_105850301 | 3300005602 | Soil | QTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLARGA* |
Ga0066903_1051549772 | 3300005764 | Tropical Forest Soil | MNSYLPQSLVWDHIRESRLQAAAARQAMAARGAQRRIRTAARRAGHRLAGGA* |
Ga0066903_1069564171 | 3300005764 | Tropical Forest Soil | MNSYLLQSLAWGHIRESRQQADEARQATAARAARRAATRARRADHRLVWGA* |
Ga0070717_110256172 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MPQSLVWDHIRESRRQAATLRQARAARSARRLSGLHARRSGHRLVRGA* |
Ga0070765_1004566533 | 3300006176 | Soil | MNSYLPQSLVWDHIRESRHHAAAARKASAARSARRRSGTHARRVGHRLARAA* |
Ga0070765_1015653811 | 3300006176 | Soil | EHINASRQQAAAARRASAARGAQRKAGRHVARRAGHWLVRSA* |
Ga0070765_1021445071 | 3300006176 | Soil | MNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLARGA* |
Ga0181537_100698182 | 3300014201 | Bog | MNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSATHTRRADHRLMRGA* |
Ga0181525_102581862 | 3300014654 | Bog | MNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSATHTRRAGHRLTRGV* |
Ga0182041_111164331 | 3300016294 | Soil | MNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAGHRLVRGA |
Ga0182041_111629582 | 3300016294 | Soil | MNSYLPKSLIWDHIRESRQQAAEARKATAVRGGHRAETRARRADHRLVREA |
Ga0182041_115975683 | 3300016294 | Soil | TARLDAMNTYLPHSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLAGGA |
Ga0182032_112851611 | 3300016357 | Soil | MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAQEA |
Ga0182034_102748061 | 3300016371 | Soil | LGGMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAREA |
Ga0187812_11335653 | 3300017821 | Freshwater Sediment | MNTYLPQSLVWDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGHRIARGA |
Ga0187812_11447142 | 3300017821 | Freshwater Sediment | MNTYLTQSLVWDHIRESRQQAAAARKASAARVGQRRAVARARRAGHRPVG |
Ga0187820_10043664 | 3300017924 | Freshwater Sediment | MNTYLPQSLVWDHIRESRQQAAAARRASAARNAWRRAGGHARRVGHQLGRRA |
Ga0187807_10939571 | 3300017926 | Freshwater Sediment | MNTYLTQSLVWDHIRESRQQAAAARQASAARVGHRHAVARTRRAGHRTVRGAFG |
Ga0187814_100536072 | 3300017932 | Freshwater Sediment | MNTYLPQSLVRDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGHRIARGA |
Ga0187814_100865132 | 3300017932 | Freshwater Sediment | MNTYLTQSLVWDHIRESRQQAAAARQASAARVGHRRAVARTRRAGHRMVRGAFG |
Ga0187816_101345241 | 3300017995 | Freshwater Sediment | MNTYLTQSLVWDHIRESRQQAAAARQASAARGAQRRTGSHARRAGKRLVRGA |
Ga0187805_105615582 | 3300018007 | Freshwater Sediment | MNTYLPQSLVRDHIRESRQQAAAARKASAARGARRRAGTHARRA |
Ga0187810_101975211 | 3300018012 | Freshwater Sediment | MNTYLPQSLVRDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGHRTVRGAFG |
Ga0187766_100571112 | 3300018058 | Tropical Peatland | MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLVRGA |
Ga0187772_101442501 | 3300018085 | Tropical Peatland | MNTYLSQNLVWDHIRESRQQAAAVRRASVARGARRRAGAHARRSGHRMARGA |
Ga0210385_100107632 | 3300021402 | Soil | MNTYLAQNLAWDHIRESRQQAAAARKATSARNGHRRAAHARRATHRILRSA |
Ga0224549_10004003 | 3300022840 | Soil | MNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLMRAA |
Ga0209008_10121603 | 3300027545 | Forest Soil | MNSYLPQSLAWDHIMESRRQAAAARKASAARSAQRRSGIHARRAAHRLVRGA |
Ga0209525_10507082 | 3300027575 | Forest Soil | MNSYLPQSLAWDHIMESRRQAAAARKASAARSAQRRSGIHARRAGHRLLRGA |
Ga0209530_11198042 | 3300027692 | Forest Soil | MNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTWRAGHRLTRGA |
Ga0208696_12245451 | 3300027696 | Peatlands Soil | MNTYLPQSLVWDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGRRIARGA |
Ga0209274_100089043 | 3300027853 | Soil | MNTYLPQSLVWDHIRESRQQAATARKASAARSAQSRSGAARRTGAHALRILRGA |
Ga0302223_100911442 | 3300028781 | Palsa | MNSYLPQTLVWDHIRESRQQAAAARKVSAASSARRQSGTHTRRAGHRLMRAA |
Ga0302235_101428243 | 3300028877 | Palsa | MNNYLPESLVWDHIRESRQQAAAAHKVSAARTARRQSGTHIRRAGHRLTRGA |
Ga0302229_103774843 | 3300028879 | Palsa | LPESLVWDHIRESRQQAAAAHKVSAARTARRQSGTHIRRAGHRLTRGA |
Ga0311340_104673623 | 3300029943 | Palsa | MNNYLPQSLVWDHIRESRQQAAAAHKVSAARTARRQSGTHIRRAGHRLTRGA |
Ga0302308_102202851 | 3300031027 | Palsa | YLPQSLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLMRAA |
Ga0318516_104987643 | 3300031543 | Soil | SYLPQSLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA |
Ga0318516_105400922 | 3300031543 | Soil | VKLKGMNSYLPQSLVWDHIRESRLQAAAARKAMAARGTQRRVRTAARRAGHRLAGGA |
Ga0318516_108793602 | 3300031543 | Soil | MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAREA |
Ga0318534_100357264 | 3300031544 | Soil | MNSYLPKSLIWDHIRESRQQAAEARKATAARGAQRRAGIRARRAEHRGA |
Ga0318534_108316771 | 3300031544 | Soil | MNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA |
Ga0318538_100434093 | 3300031546 | Soil | MNSYLPQSLVTDHIRESRQQAAEARTATAMRRARRAGHRLVRGA |
Ga0318571_104045231 | 3300031549 | Soil | MSSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRGA |
Ga0318528_106009132 | 3300031561 | Soil | MNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRGA |
Ga0318573_105262251 | 3300031564 | Soil | MNSYLPQSLIWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRG |
Ga0318515_104982973 | 3300031572 | Soil | NRDFLRRGNRGLTVKLKGMNSYLPQSLVWDHIRESRLQAAAARKAMAARGAQRRVRTAARRAGHRLVGGA |
Ga0318496_101198982 | 3300031713 | Soil | MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLARGA |
Ga0318496_102882393 | 3300031713 | Soil | RGLTVKLKGMNSYLPQSLVWDHIRESRLQAAAARKAMAARGTQRRVRTAARRAGHRLAGG |
Ga0306917_100595501 | 3300031719 | Soil | MNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAGNRLVRG |
Ga0318493_102703101 | 3300031723 | Soil | LVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA |
Ga0318501_103114361 | 3300031736 | Soil | MNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAG |
Ga0318494_101064193 | 3300031751 | Soil | MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARR |
Ga0318535_101798183 | 3300031764 | Soil | VSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLARGA |
Ga0318554_100471695 | 3300031765 | Soil | GMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGTRARRAGHRLVRGA |
Ga0318554_104139011 | 3300031765 | Soil | MNSYLPQSLVWDHIRESRQQAAETRKATAARGARRAETRARRADHRLVRGA |
Ga0318526_102542572 | 3300031769 | Soil | MNTYLPQSLVSDHIRESRQQAAAARQARAARGARRRAGTYARRVGHRLVRGA |
Ga0318566_106258431 | 3300031779 | Soil | TQGMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGTRARRAGHRLVRGA |
Ga0318557_103286031 | 3300031795 | Soil | MNTYLPHSLVSDHIRESRQQAAAARQASAARGARRRAGTHAR |
Ga0318557_103545962 | 3300031795 | Soil | MNSYLPKSLIWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRGA |
Ga0318576_105830011 | 3300031796 | Soil | MNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRA |
Ga0318565_105231513 | 3300031799 | Soil | MNSYLPQSLIWDHIRESRLQAAAARKAAAARGTQRRTGTHARRAGHRLARGA |
Ga0318512_101280071 | 3300031846 | Soil | MNTYLPHSLVSDHIRESRQQAAAARQASAARGARRRAGTHARRVGYRL |
Ga0306925_120918902 | 3300031890 | Soil | MNRYLPQSLVWDHIRESRQQAAEARQATAVRGGHRAETRARRADHRLMREA |
Ga0318551_100646232 | 3300031896 | Soil | MNTYLPHSLVSDHIRESRQQAAAARQASAARGARRRAGTHARRVGYRLVRGA |
Ga0318551_106336381 | 3300031896 | Soil | MNIYLLQSLVSDHIRESRQQAAAVRQASAARGAQRRAGTHARRAGHRLARGA |
Ga0318551_109040461 | 3300031896 | Soil | SYRNTQGMNSYLPQSLIWDHIRESRQEAAEARKAAAARGARRRVGIRARRAAHRGA |
Ga0318520_102597262 | 3300031897 | Soil | MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTQARRAGHRLARGA |
Ga0306923_121738942 | 3300031910 | Soil | MNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAGNRL |
Ga0306921_116173962 | 3300031912 | Soil | VRLEDMNSYLAHSLVSDHIRQSRQQAAAARQASAARGARRRTRTHV |
Ga0306921_118047623 | 3300031912 | Soil | SLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA |
Ga0318563_105850813 | 3300032009 | Soil | PGSYRETQGMNSYLPQSLVWDHIRESRQQAAEARKATAARGAQRRAGIRARRAEHRGA |
Ga0318563_107985662 | 3300032009 | Soil | MNIYLLQSLVSDHIRESRQQAAAVRQASAARGAQRRAGTHARRAGHRLGRGA |
Ga0318569_105412302 | 3300032010 | Soil | RQNRAFLRRGSRGLTARLGGMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTQARRAGHRLARGA |
Ga0318507_102273213 | 3300032025 | Soil | GGMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAREA |
Ga0318556_106105231 | 3300032043 | Soil | LQSLVSDHIRESRQQAAAARQASAARGAQRRAGTQARRAGHRLARGA |
Ga0318506_101866363 | 3300032052 | Soil | IYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLARGA |
Ga0318575_105609521 | 3300032055 | Soil | LPKSLIWDHIRESRQQAAEARKATAARGAQRRAGIRARRAEHRGA |
Ga0318505_103570173 | 3300032060 | Soil | GMNSYLPQSLVTDHIRESRQQAAEARTATAMRRARRAGTRARRAGHRLVRGA |
Ga0318525_100650773 | 3300032089 | Soil | VSDHIRESRQQAAAARQASAARGARRRAGTHARRVGYRLVRGA |
Ga0318577_102934481 | 3300032091 | Soil | MNSYLPQSLIWDHIRESRLQAAAARKAAAARGTQRRTGTHARRAGH |
Ga0306920_1018656521 | 3300032261 | Soil | PQSLVWDHIRESRQQAAEARKATAARGVRRAETRARRAEHRLVRGA |
Ga0306920_1019317821 | 3300032261 | Soil | MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLAREA |
Ga0335078_104351972 | 3300032805 | Soil | MNTYLPQSLVWEHIRETRQQAAAARQGIAARSARRRTGTRARRPGHRLARGA |
Ga0335074_100095028 | 3300032895 | Soil | MNTYLAQNLAWDHIRESRQQAAAARKANSARNGHRRAAHARRATHRILRSA |
Ga0335074_100150896 | 3300032895 | Soil | MNTYVPQSLLWDHIRESRQQAAADRKASAARGTQRRAGIHARRPGHRLVRGA |
Ga0335074_100369665 | 3300032895 | Soil | MNAYLAQNLAWDHIRESRQQAAAARKANSVRATHRRAGAHARRASLRILRSA |
Ga0335075_104117892 | 3300032896 | Soil | MNAYLTESLVWDHIRESRQQAAAARKASAARGVQHRPKAHARRAGLWIARSA |
Ga0335075_112038532 | 3300032896 | Soil | MNAYLAQNLAWDHIRESRQQAAAALKANSVRAAHRRAGAHARRASLRILRSA |
Ga0318519_100249735 | 3300033290 | Soil | MNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRAEHRLVRGA |
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