NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099593

Metagenome Family F099593

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099593
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 51 residues
Representative Sequence MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLVRGA
Number of Associated Samples 79
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 49.51 %
% of genes near scaffold ends (potentially truncated) 34.95 %
% of genes from short scaffolds (< 2000 bps) 83.50 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (57.282 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(39.806 % of family members)
Environment Ontology (ENVO) Unclassified
(50.485 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(46.602 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.
1JGI12269J14319_100627143
2JGI12712J15308_101690512
3JGI12635J15846_107389011
4JGIcombinedJ51221_100880792
5JGIcombinedJ51221_101261672
6Ga0062387_1004945372
7Ga0062387_1016435171
8Ga0062389_1029197172
9Ga0062388_1011853752
10Ga0070735_104784073
11Ga0070731_107009751
12Ga0070761_1000336110
13Ga0070762_102542873
14Ga0070762_105850301
15Ga0066903_1051549772
16Ga0066903_1069564171
17Ga0070717_110256172
18Ga0070765_1004566533
19Ga0070765_1015653811
20Ga0070765_1021445071
21Ga0181537_100698182
22Ga0181525_102581862
23Ga0182041_111164331
24Ga0182041_111629582
25Ga0182041_115975683
26Ga0182032_112851611
27Ga0182034_102748061
28Ga0187812_11335653
29Ga0187812_11447142
30Ga0187820_10043664
31Ga0187807_10939571
32Ga0187814_100536072
33Ga0187814_100865132
34Ga0187816_101345241
35Ga0187805_105615582
36Ga0187810_101975211
37Ga0187766_100571112
38Ga0187772_101442501
39Ga0210385_100107632
40Ga0224549_10004003
41Ga0209008_10121603
42Ga0209525_10507082
43Ga0209530_11198042
44Ga0208696_12245451
45Ga0209274_100089043
46Ga0302223_100911442
47Ga0302235_101428243
48Ga0302229_103774843
49Ga0311340_104673623
50Ga0302308_102202851
51Ga0318516_104987643
52Ga0318516_105400922
53Ga0318516_108793602
54Ga0318534_100357264
55Ga0318534_108316771
56Ga0318538_100434093
57Ga0318571_104045231
58Ga0318528_106009132
59Ga0318573_105262251
60Ga0318515_104982973
61Ga0318496_101198982
62Ga0318496_102882393
63Ga0306917_100595501
64Ga0318493_102703101
65Ga0318501_103114361
66Ga0318494_101064193
67Ga0318535_101798183
68Ga0318554_100471695
69Ga0318554_104139011
70Ga0318526_102542572
71Ga0318566_106258431
72Ga0318557_103286031
73Ga0318557_103545962
74Ga0318576_105830011
75Ga0318565_105231513
76Ga0318512_101280071
77Ga0306925_120918902
78Ga0318551_100646232
79Ga0318551_106336381
80Ga0318551_109040461
81Ga0318520_102597262
82Ga0306923_121738942
83Ga0306921_116173962
84Ga0306921_118047623
85Ga0318563_105850813
86Ga0318563_107985662
87Ga0318569_105412302
88Ga0318507_102273213
89Ga0318556_106105231
90Ga0318506_101866363
91Ga0318575_105609521
92Ga0318505_103570173
93Ga0318525_100650773
94Ga0318577_102934481
95Ga0306920_1018656521
96Ga0306920_1019317821
97Ga0335078_104351972
98Ga0335074_100095028
99Ga0335074_100150896
100Ga0335074_100369665
101Ga0335075_104117892
102Ga0335075_112038532
103Ga0318519_100249735
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 61.25%    β-sheet: 0.00%    Coil/Unstructured: 38.75%
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Variant

5101520253035404550MNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLVRGASequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
42.7%57.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Bog Forest Soil
Bog
Freshwater Sediment
Surface Soil
Peatlands Soil
Soil
Soil
Soil
Tropical Peatland
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Palsa
3.9%8.7%39.8%11.7%5.8%6.8%6.8%4.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1006271433300001356Peatlands SoilMNTYLPQSLVWDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGRRIARGA*
JGI12712J15308_1016905123300001471Forest SoilMDRYMPQSLVWDHIRESRQQAAAARQAKVARGARRRSGLHARRLGHRPVRGA*
JGI12635J15846_1073890113300001593Forest SoilMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTWRAGHRLTRGA*
JGIcombinedJ51221_1008807923300003505Forest SoilMNSYVPQSLVWDHIKESRQQAAAARKASAARGARRRSGTHARRAGHRLARGA*
JGIcombinedJ51221_1012616723300003505Forest SoilMNTYLAQNLAWDHIRESRQQAAAARKATSARNGHRRAAHARRATHRILRSA*
Ga0062387_10049453723300004091Bog Forest SoilMNSYLPQSLVWDHIRQSRQQAAAARKVSAARSARRHSGTHPRRAGHRLARGA*
Ga0062387_10164351713300004091Bog Forest SoilLAWDHIRESRQHAAAARKASAVRSTRRRSGTHARRVSHRLARGA*
Ga0062389_10291971723300004092Bog Forest SoilMNSYLPQSLIWDHIRESRRQAAAARKASAARSAQRRSGIHARLAGHRLVRGA*
Ga0062388_10118537523300004635Bog Forest SoilMNSYLPQSLAWDHIRESRQHAAAARKASAVRSTRRRSGTHARRVSHRLARGA*
Ga0070735_1047840733300005534Surface SoilMDRYMPQSLVWDHIRESRQQAAAARQAKVARGVRRRSGLHARRLGHRPVRGD*
Ga0070731_1070097513300005538Surface SoilMDRYMPQSLVWDHIRESRQQAAAARQAKVARGVRRRSGLHARRLGHRPVRGA*
Ga0070761_10003361103300005591SoilMNTYLPQSLVWDHIRESRQQAATARKASAARSAQSRSGAARRTGAHALRILRGA*
Ga0070762_1025428733300005602SoilMNSYLPQSLVWDHIRESRQQAAAARKASAARSARRRSGTHARRVGHRLARGA*
Ga0070762_1058503013300005602SoilQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLARGA*
Ga0066903_10515497723300005764Tropical Forest SoilMNSYLPQSLVWDHIRESRLQAAAARQAMAARGAQRRIRTAARRAGHRLAGGA*
Ga0066903_10695641713300005764Tropical Forest SoilMNSYLLQSLAWGHIRESRQQADEARQATAARAARRAATRARRADHRLVWGA*
Ga0070717_1102561723300006028Corn, Switchgrass And Miscanthus RhizosphereMPQSLVWDHIRESRRQAATLRQARAARSARRLSGLHARRSGHRLVRGA*
Ga0070765_10045665333300006176SoilMNSYLPQSLVWDHIRESRHHAAAARKASAARSARRRSGTHARRVGHRLARAA*
Ga0070765_10156538113300006176SoilEHINASRQQAAAARRASAARGAQRKAGRHVARRAGHWLVRSA*
Ga0070765_10214450713300006176SoilMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLARGA*
Ga0181537_1006981823300014201BogMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSATHTRRADHRLMRGA*
Ga0181525_1025818623300014654BogMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSATHTRRAGHRLTRGV*
Ga0182041_1111643313300016294SoilMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAGHRLVRGA
Ga0182041_1116295823300016294SoilMNSYLPKSLIWDHIRESRQQAAEARKATAVRGGHRAETRARRADHRLVREA
Ga0182041_1159756833300016294SoilTARLDAMNTYLPHSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLAGGA
Ga0182032_1128516113300016357SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAQEA
Ga0182034_1027480613300016371SoilLGGMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAREA
Ga0187812_113356533300017821Freshwater SedimentMNTYLPQSLVWDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGHRIARGA
Ga0187812_114471423300017821Freshwater SedimentMNTYLTQSLVWDHIRESRQQAAAARKASAARVGQRRAVARARRAGHRPVG
Ga0187820_100436643300017924Freshwater SedimentMNTYLPQSLVWDHIRESRQQAAAARRASAARNAWRRAGGHARRVGHQLGRRA
Ga0187807_109395713300017926Freshwater SedimentMNTYLTQSLVWDHIRESRQQAAAARQASAARVGHRHAVARTRRAGHRTVRGAFG
Ga0187814_1005360723300017932Freshwater SedimentMNTYLPQSLVRDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGHRIARGA
Ga0187814_1008651323300017932Freshwater SedimentMNTYLTQSLVWDHIRESRQQAAAARQASAARVGHRRAVARTRRAGHRMVRGAFG
Ga0187816_1013452413300017995Freshwater SedimentMNTYLTQSLVWDHIRESRQQAAAARQASAARGAQRRTGSHARRAGKRLVRGA
Ga0187805_1056155823300018007Freshwater SedimentMNTYLPQSLVRDHIRESRQQAAAARKASAARGARRRAGTHARRA
Ga0187810_1019752113300018012Freshwater SedimentMNTYLPQSLVRDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGHRTVRGAFG
Ga0187766_1005711123300018058Tropical PeatlandMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLVRGA
Ga0187772_1014425013300018085Tropical PeatlandMNTYLSQNLVWDHIRESRQQAAAVRRASVARGARRRAGAHARRSGHRMARGA
Ga0210385_1001076323300021402SoilMNTYLAQNLAWDHIRESRQQAAAARKATSARNGHRRAAHARRATHRILRSA
Ga0224549_100040033300022840SoilMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLMRAA
Ga0209008_101216033300027545Forest SoilMNSYLPQSLAWDHIMESRRQAAAARKASAARSAQRRSGIHARRAAHRLVRGA
Ga0209525_105070823300027575Forest SoilMNSYLPQSLAWDHIMESRRQAAAARKASAARSAQRRSGIHARRAGHRLLRGA
Ga0209530_111980423300027692Forest SoilMNSYLPQTLVWDHIRESRQQAAAARKVSAARSARRQSGTHTWRAGHRLTRGA
Ga0208696_122454513300027696Peatlands SoilMNTYLPQSLVWDHIRESRQQAAAARQAIAARGAQRRTGTRARRAGRRIARGA
Ga0209274_1000890433300027853SoilMNTYLPQSLVWDHIRESRQQAATARKASAARSAQSRSGAARRTGAHALRILRGA
Ga0302223_1009114423300028781PalsaMNSYLPQTLVWDHIRESRQQAAAARKVSAASSARRQSGTHTRRAGHRLMRAA
Ga0302235_1014282433300028877PalsaMNNYLPESLVWDHIRESRQQAAAAHKVSAARTARRQSGTHIRRAGHRLTRGA
Ga0302229_1037748433300028879PalsaLPESLVWDHIRESRQQAAAAHKVSAARTARRQSGTHIRRAGHRLTRGA
Ga0311340_1046736233300029943PalsaMNNYLPQSLVWDHIRESRQQAAAAHKVSAARTARRQSGTHIRRAGHRLTRGA
Ga0302308_1022028513300031027PalsaYLPQSLVWDHIRESRQQAAAARKVSAARSARRQSGTHTRRAGHRLMRAA
Ga0318516_1049876433300031543SoilSYLPQSLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA
Ga0318516_1054009223300031543SoilVKLKGMNSYLPQSLVWDHIRESRLQAAAARKAMAARGTQRRVRTAARRAGHRLAGGA
Ga0318516_1087936023300031543SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAREA
Ga0318534_1003572643300031544SoilMNSYLPKSLIWDHIRESRQQAAEARKATAARGAQRRAGIRARRAEHRGA
Ga0318534_1083167713300031544SoilMNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA
Ga0318538_1004340933300031546SoilMNSYLPQSLVTDHIRESRQQAAEARTATAMRRARRAGHRLVRGA
Ga0318571_1040452313300031549SoilMSSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRGA
Ga0318528_1060091323300031561SoilMNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRGA
Ga0318573_1052622513300031564SoilMNSYLPQSLIWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRG
Ga0318515_1049829733300031572SoilNRDFLRRGNRGLTVKLKGMNSYLPQSLVWDHIRESRLQAAAARKAMAARGAQRRVRTAARRAGHRLVGGA
Ga0318496_1011989823300031713SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLARGA
Ga0318496_1028823933300031713SoilRGLTVKLKGMNSYLPQSLVWDHIRESRLQAAAARKAMAARGTQRRVRTAARRAGHRLAGG
Ga0306917_1005955013300031719SoilMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAGNRLVRG
Ga0318493_1027031013300031723SoilLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA
Ga0318501_1031143613300031736SoilMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAG
Ga0318494_1010641933300031751SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARR
Ga0318535_1017981833300031764SoilVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLARGA
Ga0318554_1004716953300031765SoilGMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGTRARRAGHRLVRGA
Ga0318554_1041390113300031765SoilMNSYLPQSLVWDHIRESRQQAAETRKATAARGARRAETRARRADHRLVRGA
Ga0318526_1025425723300031769SoilMNTYLPQSLVSDHIRESRQQAAAARQARAARGARRRAGTYARRVGHRLVRGA
Ga0318566_1062584313300031779SoilTQGMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGTRARRAGHRLVRGA
Ga0318557_1032860313300031795SoilMNTYLPHSLVSDHIRESRQQAAAARQASAARGARRRAGTHAR
Ga0318557_1035459623300031795SoilMNSYLPKSLIWDHIRESRQQAAEARKATAARGARRAETRARRADHRLVRGA
Ga0318576_1058300113300031796SoilMNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRA
Ga0318565_1052315133300031799SoilMNSYLPQSLIWDHIRESRLQAAAARKAAAARGTQRRTGTHARRAGHRLARGA
Ga0318512_1012800713300031846SoilMNTYLPHSLVSDHIRESRQQAAAARQASAARGARRRAGTHARRVGYRL
Ga0306925_1209189023300031890SoilMNRYLPQSLVWDHIRESRQQAAEARQATAVRGGHRAETRARRADHRLMREA
Ga0318551_1006462323300031896SoilMNTYLPHSLVSDHIRESRQQAAAARQASAARGARRRAGTHARRVGYRLVRGA
Ga0318551_1063363813300031896SoilMNIYLLQSLVSDHIRESRQQAAAVRQASAARGAQRRAGTHARRAGHRLARGA
Ga0318551_1090404613300031896SoilSYRNTQGMNSYLPQSLIWDHIRESRQEAAEARKAAAARGARRRVGIRARRAAHRGA
Ga0318520_1025972623300031897SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTQARRAGHRLARGA
Ga0306923_1217389423300031910SoilMNSYLPQSLVTDHIRESRQQAAEARTATAVRRARRAGNRARRAGNRL
Ga0306921_1161739623300031912SoilVRLEDMNSYLAHSLVSDHIRQSRQQAAAARQASAARGARRRTRTHV
Ga0306921_1180476233300031912SoilSLVWDHIRESRQQAAEARKATAARGARRAEARARRAEHRLVQGA
Ga0318563_1058508133300032009SoilPGSYRETQGMNSYLPQSLVWDHIRESRQQAAEARKATAARGAQRRAGIRARRAEHRGA
Ga0318563_1079856623300032009SoilMNIYLLQSLVSDHIRESRQQAAAVRQASAARGAQRRAGTHARRAGHRLGRGA
Ga0318569_1054123023300032010SoilRQNRAFLRRGSRGLTARLGGMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTQARRAGHRLARGA
Ga0318507_1022732133300032025SoilGGMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGSHARRAGHRLAREA
Ga0318556_1061052313300032043SoilLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTQARRAGHRLARGA
Ga0318506_1018663633300032052SoilIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLARGA
Ga0318575_1056095213300032055SoilLPKSLIWDHIRESRQQAAEARKATAARGAQRRAGIRARRAEHRGA
Ga0318505_1035701733300032060SoilGMNSYLPQSLVTDHIRESRQQAAEARTATAMRRARRAGTRARRAGHRLVRGA
Ga0318525_1006507733300032089SoilVSDHIRESRQQAAAARQASAARGARRRAGTHARRVGYRLVRGA
Ga0318577_1029344813300032091SoilMNSYLPQSLIWDHIRESRLQAAAARKAAAARGTQRRTGTHARRAGH
Ga0306920_10186565213300032261SoilPQSLVWDHIRESRQQAAEARKATAARGVRRAETRARRAEHRLVRGA
Ga0306920_10193178213300032261SoilMNIYLLQSLVSDHIRESRQQAAAARQASAARGAQRRAGTHARRAGHRLAREA
Ga0335078_1043519723300032805SoilMNTYLPQSLVWEHIRETRQQAAAARQGIAARSARRRTGTRARRPGHRLARGA
Ga0335074_1000950283300032895SoilMNTYLAQNLAWDHIRESRQQAAAARKANSARNGHRRAAHARRATHRILRSA
Ga0335074_1001508963300032895SoilMNTYVPQSLLWDHIRESRQQAAADRKASAARGTQRRAGIHARRPGHRLVRGA
Ga0335074_1003696653300032895SoilMNAYLAQNLAWDHIRESRQQAAAARKANSVRATHRRAGAHARRASLRILRSA
Ga0335075_1041178923300032896SoilMNAYLTESLVWDHIRESRQQAAAARKASAARGVQHRPKAHARRAGLWIARSA
Ga0335075_1120385323300032896SoilMNAYLAQNLAWDHIRESRQQAAAALKANSVRAAHRRAGAHARRASLRILRSA
Ga0318519_1002497353300033290SoilMNSYLPQSLVWDHIRESRQQAAEARKATAARGARRAETRARRAEHRLVRGA


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