Metagenome / Metatranscriptome Family F099583

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099583
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	46 residues
Representative Sequence	VHGSEEDDVEQGGQRFPVRYVYMDVVVKRNGGWQIVGSQLAKPEP
Number of Associated Samples	92
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.04 %
% of genes near scaffold ends (potentially truncated)	88.35 %
% of genes from short scaffolds (< 2000 bps)	88.35 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.699 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.447 % of family members)
Environment Ontology (ENVO)	Unclassified (27.184 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.252 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 49.32% Coil/Unstructured: 50.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF09335	SNARE_assoc	53.40
PF02163	Peptidase_M50	1.94
PF15902	Sortilin-Vps10	1.94
PF13549	ATP-grasp_5	0.97
PF07043	DUF1328	0.97
PF01339	CheB_methylest	0.97
PF00930	DPPIV_N	0.97
PF13416	SBP_bac_8	0.97
PF14534	DUF4440	0.97
PF14066	DUF4256	0.97
PF00749	tRNA-synt_1c	0.97
PF05345	He_PIG	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	53.40
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	53.40
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	53.40
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	1.94
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	0.97
COG1506	Dipeptidyl aminopeptidase/acylaminoacyl peptidase	Amino acid transport and metabolism [E]	0.97
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.70 %
Unclassified	root	N/A	23.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.70 %
Unclassified	root	N/A	23.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.70 %
Unclassified	root	N/A	23.30 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	57.28 %
Unclassified	root	N/A	23.30 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	42.72 %
Unclassified	root	N/A	23.30 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.56 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.72 %
Unclassified	root	N/A	23.30 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.56 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.97 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.72 %
Unclassified	root	N/A	23.30 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14.56 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	1.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.72 %
Unclassified	root	N/A	23.30 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.91 %
Bacteroidetes bacterium 13_1_20CM_4_60_6	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	1.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.72 %
Unclassified	root	N/A	23.30 %
Bacteroidetes bacterium 13_1_20CM_4_60_6	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	1.94 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573004\|GZGWRS402F9V1C	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300001593\|JGI12635J15846_10539421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300001867\|JGI12627J18819_10119112	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300002245\|JGIcombinedJ26739_101817460	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300004080\|Ga0062385_10647171	Not Available	674	Open in IMG/M
3300005176\|Ga0066679_10508975	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005178\|Ga0066688_10102393	Not Available	1752	Open in IMG/M
3300005434\|Ga0070709_10686955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300005437\|Ga0070710_10150299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1436	Open in IMG/M
3300005542\|Ga0070732_10766728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300005591\|Ga0070761_10212868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1148	Open in IMG/M
3300005598\|Ga0066706_10555278	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300005610\|Ga0070763_10580282	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300006059\|Ga0075017_101441673	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300006086\|Ga0075019_10866513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300006176\|Ga0070765_100763241	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300009523\|Ga0116221_1069667	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300009633\|Ga0116129_1029703	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300009641\|Ga0116120_1127658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	827	Open in IMG/M
3300009759\|Ga0116101_1000714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3939	Open in IMG/M
3300009824\|Ga0116219_10113587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1578	Open in IMG/M
3300010046\|Ga0126384_10447243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1102	Open in IMG/M
3300010398\|Ga0126383_13699098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300011120\|Ga0150983_15581315	Not Available	927	Open in IMG/M
3300012923\|Ga0137359_10403436	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1212	Open in IMG/M
3300012923\|Ga0137359_11236791	Not Available	635	Open in IMG/M
3300012929\|Ga0137404_11993077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300014169\|Ga0181531_10151023	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
3300015264\|Ga0137403_11212580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300017822\|Ga0187802_10362040	Not Available	571	Open in IMG/M
3300017930\|Ga0187825_10145658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	835	Open in IMG/M
3300017946\|Ga0187879_10603506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300017975\|Ga0187782_11623110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300018060\|Ga0187765_11327617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300020580\|Ga0210403_10991316	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300020582\|Ga0210395_10688573	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	765	Open in IMG/M
3300021088\|Ga0210404_10760796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300021168\|Ga0210406_10084725	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2708	Open in IMG/M
3300021170\|Ga0210400_10061655	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2924	Open in IMG/M
3300021171\|Ga0210405_11430326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300021180\|Ga0210396_11100185	Not Available	669	Open in IMG/M
3300021401\|Ga0210393_11601477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300021406\|Ga0210386_10401534	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1181	Open in IMG/M
3300021406\|Ga0210386_11527389	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300021432\|Ga0210384_11522984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300021474\|Ga0210390_10303554	Not Available	1352	Open in IMG/M
3300021474\|Ga0210390_10796513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300021475\|Ga0210392_10754763	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	726	Open in IMG/M
3300021475\|Ga0210392_10899520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300021478\|Ga0210402_10136290	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2229	Open in IMG/M
3300025463\|Ga0208193_1055144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300025916\|Ga0207663_10019378	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3832	Open in IMG/M
3300025939\|Ga0207665_10953985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300025939\|Ga0207665_11285197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300026335\|Ga0209804_1110949	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1252	Open in IMG/M
3300027072\|Ga0208238_1021397	Not Available	564	Open in IMG/M
3300027076\|Ga0208860_1021365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300027567\|Ga0209115_1043255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1024	Open in IMG/M
3300027570\|Ga0208043_1134082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	653	Open in IMG/M
3300027652\|Ga0209007_1062524	Not Available	942	Open in IMG/M
3300027676\|Ga0209333_1013200	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2421	Open in IMG/M
3300027783\|Ga0209448_10265687	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300027842\|Ga0209580_10096182	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1428	Open in IMG/M
3300027842\|Ga0209580_10530054	Not Available	586	Open in IMG/M
3300027905\|Ga0209415_10313514	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1340	Open in IMG/M
3300027905\|Ga0209415_10548090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	874	Open in IMG/M
3300027908\|Ga0209006_10933780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300028574\|Ga0302153_10217185	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300028766\|Ga0302269_1154249	Not Available	657	Open in IMG/M
3300028792\|Ga0307504_10488784	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300028906\|Ga0308309_10091597	All Organisms → cellular organisms → Bacteria	2328	Open in IMG/M
3300028906\|Ga0308309_10571900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300029915\|Ga0311358_10383911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1144	Open in IMG/M
3300029917\|Ga0311326_10514683	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300029943\|Ga0311340_10448136	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1170	Open in IMG/M
3300030057\|Ga0302176_10041906	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1750	Open in IMG/M
3300030659\|Ga0316363_10281512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300030759\|Ga0265745_1028179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300031233\|Ga0302307_10277913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	858	Open in IMG/M
3300031249\|Ga0265339_10336902	Not Available	713	Open in IMG/M
3300031258\|Ga0302318_10419901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300031708\|Ga0310686_102645473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300031708\|Ga0310686_118461202	Not Available	703	Open in IMG/M
3300031715\|Ga0307476_11246999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300031718\|Ga0307474_10424075	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300031740\|Ga0307468_100195385	Not Available	1361	Open in IMG/M
3300031820\|Ga0307473_10831053	Not Available	661	Open in IMG/M
3300031823\|Ga0307478_11078736	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300032055\|Ga0318575_10292188	Not Available	824	Open in IMG/M
3300032180\|Ga0307471_100511429	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1350	Open in IMG/M
3300032180\|Ga0307471_103123343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300032205\|Ga0307472_101370640	Not Available	684	Open in IMG/M
3300032805\|Ga0335078_10418328	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1752	Open in IMG/M
3300033134\|Ga0335073_10435492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1520	Open in IMG/M
3300033887\|Ga0334790_173962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300034124\|Ga0370483_0222276	Not Available	644	Open in IMG/M
3300034125\|Ga0370484_0111780	Not Available	717	Open in IMG/M
3300034282\|Ga0370492_0138364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	996	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.03%
Host-Associated	Host-Associated	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.41%
Aquatic	Environmental → Aquatic	12.62%
Plants	Host-Associated → Plants	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.70%
Freshwater	Environmental → Aquatic → Freshwater	10.68%
Peat	Environmental → Terrestrial → Peat	9.71%
Sediment	Environmental → Aquatic → Sediment	1.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.51%
Loam	Environmental → Terrestrial → Soil → Loam	20.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.53%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.83%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.91%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.97%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300027072	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF013 (SPAdes)	Environmental	Open in IMG/M
3300027076	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028574	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2	Environmental	Open in IMG/M
3300028766	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_2	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029917	I_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030759	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FG2_08461190	2189573004	Grass Soil	SIRLFGDFAIVHGSEDDIVEADGRRFPARYLYMDVVTKRNGRWQIVGSLLAKEETD
JGI12712J15308_101242632	3300001471	Forest Soil	IDQGGKHLNVRYVYMDVVMKRNGTWQIIGSQLARPLPG*
JGI12635J15846_105394212	3300001593	Forest Soil	AIVHGSEDDEVEQDGRRFTVRYIYMDVVAKREGRWQIVGSQLAKPPEIQ*
JGI12627J18819_101191123	3300001867	Forest Soil	RIRLFGDFAIVHGSESDEVDREGSRFAVRYLYMDVVCRRNGHWQIIGSQLLKPDQ*
JGIcombinedJ26739_1018174602	3300002245	Forest Soil	HGSEEDEVEQASKRFPLRYIYMDAVVKRNGKWKIVASQLARPVEIP*
Ga0062385_106471711	3300004080	Bog Forest Soil	VHGSEDDLVEQSGKRFPVSYVYMDVVMRREGRWQIVGSQLARPNQ*
Ga0066679_105089751	3300005176	Soil	LGEDMAIVHGSEDDEVEQGGRRFSVRYVYIDVVVRRDGRWQIVESQLAKQ*
Ga0066688_101023931	3300005178	Soil	LFGDFAIVHGSESDEVDREGSRFAVRYLYMDVVCRRNGHWQIVGSQLLKPDH*
Ga0070709_106869552	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	EVETEGKRFSVKYLYMDVVCRRAGRWQIVGSQLVRPEEK*
Ga0070710_101502993	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GDFAIVHGAEDDIVETDRQRFPARYVYLDVVVKRNGRWQIVGSLLAKPDPAA*
Ga0070732_107667281	3300005542	Surface Soil	FAVVHGSEADEIEREGQRVSVRYVYMDVVIRRRGRWQIVASQLAKPDGVTYAV*
Ga0070761_102128682	3300005591	Soil	VALVHGSKDEEVEQAGRRFQVRCVYTDIVMKRDGRWQIVSSQLAMPS*
Ga0066706_105552782	3300005598	Soil	REDVAIVHGSEEDVVERSEEQMPVRYFYLDVVMKRGGRWQVVDSQLARQQTNS*
Ga0070763_105802822	3300005610	Soil	LSRDAAIVHGSEEDDVEQAGQRFPVRYIYMDAVVKRKGKWQIVASQLAKPDEIQ*
Ga0075017_1014416731	3300006059	Watersheds	RMFGEMAIVHGVEDDEVEIGGQRFPARYLYMDVVCRREGRWQIVGSQLAKPAE*
Ga0075019_108665131	3300006086	Watersheds	VHGSEDDVIEEGGEPVPVRYVYMDVVVKREERWQIIASQLAKLP*
Ga0070765_1007632412	3300006176	Soil	LLSREIALVHGSEEDEVERAGKRYSIRYIYMDTVVKRHGEWRIVASQLARPIEIR*
Ga0116221_10696671	3300009523	Peatlands Soil	DIAIVHGSEEDEVEQGGKLFNVRYVYMDVVVKRNGRWQIVGSQLAKPSE*
Ga0116129_10297031	3300009633	Peatland	EDDVEQGGRRFPVRYIYMDVVMKRNGKWQIVGSQLAKP*
Ga0116120_11276581	3300009641	Peatland	IVHGSEEDDVEQGGRRFPVRYVYMDVVMKRDDRWQIVGSQLAKDVL*
Ga0116101_10007146	3300009759	Peatland	VVHGSEDDIVEQAGKRFPVRYVYMDVVMKRKGNWQIVRSQLARPAERS*
Ga0116219_101135874	3300009824	Peatlands Soil	EQGGKQFPVRYLYMDVVMKRAGRWQIVGSQLAKPIGQRERLTDG*
Ga0126384_104472432	3300010046	Tropical Forest Soil	DSAVVHGSEEDEIERDGATLVVKYVYLDVVVRRDGRWQIVASQLAKL*
Ga0126383_136990982	3300010398	Tropical Forest Soil	AIVHGSEQDEVEAHGKRFSIRYLYMDIVLKRGGRWQIVGSQLVKPATD*
Ga0150983_155813151	3300011120	Forest Soil	FGDLAIVHGSESDEVDREGSRFAVRYLYMDVVCRRNGNWQIVGSQLLKPDQ*
Ga0137359_104034363	3300012923	Vadose Zone Soil	AIVHGSEDDDVEQGGRRFPVSYVYVDVVMKRDGKWQIVGSQLAKQV*
Ga0137359_112367911	3300012923	Vadose Zone Soil	NEDVAIVHGSESDEVEQNGRRFPVRYVYMDVVVKRDGKWQIVASQDNKVECK*
Ga0137404_119930772	3300012929	Vadose Zone Soil	CIRLFGEMAIVHGSESDELEAGGKRISVRFLYMDVVCKRRGKWQIVGSQLVRLREN*
Ga0181531_101510233	3300014169	Bog	VAVVHGSEDDIVEQAGKRFPVRYVYMDVVMKRKGNWQIVRSQLARPAERS*
Ga0137403_112125801	3300015264	Vadose Zone Soil	CIRLFGEMAIVHGSESDELEAGGKRISVRYLYMDVVCKRRGKWQIVGSQLVRLREN*
Ga0187802_103620401	3300017822	Freshwater Sediment	VVHGSEDDVVEQGGKRVAVRYVYMDVAMKRGDRRQIVASQLAR
Ga0187825_101456581	3300017930	Freshwater Sediment	IRLFDDMAIVHGVEEDEVERQGRRFPARYLYMDVVCRRDGRWWIVGSQLVVPARG
Ga0187879_106035061	3300017946	Peatland	EDDVEQGGRRFPVRYVYMDVVVKCNGKWQIVGSQLAKPIEGL
Ga0187782_116231101	3300017975	Tropical Peatland	EEDEVEQNGKRSSVGYVYVDVVMKRDGRWQIVASQLAKTA
Ga0187874_102192242	3300018019	Peatland	QSGKLFLVRYIYMDVVAKRSGEWQIVVSQLARPVDI
Ga0187765_113276172	3300018060	Tropical Peatland	AIVHGSERDEVEQAGQRSTVSYLYMDVVVRREGRWQIVASQLVKL
Ga0210403_109913162	3300020580	Soil	EDDVIEQAGRRFPARYFYMDVVVKRNGNWQIVASQLSRPPAGTG
Ga0210395_106885732	3300020582	Soil	LTENIGIVNGAEDDEIEQDGQRRHVRYIYLDVVIKREDRWQISASQLAKPLVE
Ga0210404_107607961	3300021088	Soil	RGAESDEVESGGKRFPVHYLYMDVVLKRDGRWQIVGSQLVKPAE
Ga0210406_100847255	3300021168	Soil	DEVEQGGKRFPVRYLYRDVVMKRDGRWQIVGSQLARPAEPS
Ga0210400_100616556	3300021170	Soil	HGSEEDDVEQGGRRFPVRYFYMDVVMKRNGRWQIVGSQLAKAT
Ga0210405_114303262	3300021171	Soil	IVHGSEEDQVEADGHRFAARYLYLDAVVKRNGRWQIVASLLAKPEAA
Ga0210396_111001852	3300021180	Soil	EDQVEADGHRFAARYLYMDVVVKRNGRWQIVASLLAKPEAA
Ga0210393_116014772	3300021401	Soil	IVHGSEDDVVEQGGRRLPVSYVYMDVVMKRGGKWQIVASQLARPPQHS
Ga0210385_100436715	3300021402	Soil	EQDGKRFPVRYVYMDVVMKRDGRWQIVQSQLARPTK
Ga0210386_104015341	3300021406	Soil	EVESGESRFSVRYLYMDVACKRSGKWQILGSQLVKPSD
Ga0210386_115273892	3300021406	Soil	LSRDAAIVHGSEEDDVEQAGQRFPVRYIYMDAVVKRKGKWQIVASQLAKPDEIQ
Ga0210384_115229841	3300021432	Soil	EEDDVEQGGRRFPVSYVYMDVVVKRDGRWQIVGSQLAKQS
Ga0210390_103035544	3300021474	Soil	GAEMDEVESGGKRFPVHYLYMDVVLKRDGRWQIVGSQLVKPAE
Ga0210390_107965132	3300021474	Soil	VVEQDGKRFPVSYVYMDVVMKRDGRWQIVQSQLARLTK
Ga0210390_111540461	3300021474	Soil	EQAGKRFPVRYVYTDVVVKLDGRWQIVASQLAKPPVGNQATY
Ga0210392_107547632	3300021475	Soil	ENIGIVNGAEDDEIEQDGQRRHVRYIYLDVVIKREDRWQISASQLAKPLVE
Ga0210392_108995201	3300021475	Soil	GSEDDVVEQGGRRFPVLYIYMDVVMKRGGRWQIVGSQLARP
Ga0210402_101362904	3300021478	Soil	DDVAVVNGSEDDIVEQGGKRFRVHYVYLDVVVRRGERWQIVASQLAKDPTGSTVLADR
Ga0208193_10551442	3300025463	Peatland	EEDDVEQGGRRFPVRYIYMDVVMKRNGKWQIVGSQLAKP
Ga0207663_100193785	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AIVHGAEDDIVETDRQRFPARYVYLDVVVKRNGRWQIVGSLLAKPDPAA
Ga0207665_109539851	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	RIRMFGDMAIVHGSEADEVESGGKRSSVRYLYMDVVYKRGGRWQIVGSQLVKPAEEASEVAS
Ga0207665_112851971	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	FGDFAIVHGSENDIVEADGRRFPARYLYMDVVAKRNGRWQIVASLLAKPEER
Ga0209804_11109493	3300026335	Soil	VDSEGSRFAVRYLYMDVVCRRNGHWQILGSQLLKPDQ
Ga0208238_10213971	3300027072	Forest Soil	LSEQIAIVHGSENDEVENKGVRINIRYVYMDIVVKHNGGWQIVASQLAKPPQA
Ga0208860_10213651	3300027076	Forest Soil	AIVHGSESDEVESGESRFSVRYLYMDVACKRSGKWQILGSQLVKPSD
Ga0209115_10432551	3300027567	Forest Soil	VHGSEEDDVEQGGQRFPVRYVYMDVVVKRNGGWQIVGSQLAKPEP
Ga0208043_11340822	3300027570	Peatlands Soil	DDVVEQGGKRFPVRYLYMDVAMKRAGKWQIVGSQLAKPAERS
Ga0209007_10625241	3300027652	Forest Soil	HGSEKDEVEQAGKCFFIRYIYMDAVVKRNGRWQIVASQLARPPGIR
Ga0209333_10132001	3300027676	Forest Soil	RLTEDVAIVHGSEEDELEQDGKRFRVRYLYMDVVVKREGQWQIFASQLAKLA
Ga0209448_102656872	3300027783	Bog Forest Soil	GVAIVHGSEEDEVEQAGKRFPVRYVYMDAVVNRNGRWQIVASQLAKPHSI
Ga0209580_100961823	3300027842	Surface Soil	RDDIALVHGSEEDIVEQAGQRVTVRYVYTDVVMKREGRWQIVTSQLAKST
Ga0209580_105300541	3300027842	Surface Soil	VHGSEEDEIERDGESVVVQYVYMDVVVRRDGRWQIVASQLAKL
Ga0209415_103135143	3300027905	Peatlands Soil	VHGSEDDVVEQGGKRFPVRYIYLDVVMKRDGRWQIVASQLAKP
Ga0209415_105480902	3300027905	Peatlands Soil	IVHGSEDDEVEQAGRRFQVRYVYTDIVMKREGKWQIVGSQLAKP
Ga0209006_109337801	3300027908	Forest Soil	MVEQDGQRFPVRYAYMDVVMKRDQGWQIVGSQLVKPTEDRAADSA
Ga0302153_102171851	3300028574	Bog	AIVHGSEEDEVEQNGKRFAVRYVYMDVVLKRDGEWQIVGSQLARPAEAL
Ga0302269_11542492	3300028766	Bog	SEQDDVEQGGQRFPVEYIYMDVVIKREGHWQIVGSQLAKLKED
Ga0307504_104887842	3300028792	Soil	SELDEVEADGRRFSVRYLYMDVVCRRDGRWQIVGSQLVRPSEK
Ga0308309_100915972	3300028906	Soil	LLSREIALVHGSEEDEVERAGKRYSIRYIYMDTVVKRHGEWRIVASQLARPIEIR
Ga0308309_105719003	3300028906	Soil	HGSEEDEVEQAGKRFPIRYVYMDAVVKRNGKWQIVASQLAKLSS
Ga0311358_103839112	3300029915	Bog	DDEVEQDGRRFTVRYIYMDVVVKREGRWQIVASQLAKIS
Ga0311326_105146832	3300029917	Bog	DVEQAGQRFPVRYIYMDVVVKRNGRWQIVGSQLAKPEAQ
Ga0311340_104481363	3300029943	Palsa	VAIVHGSEVDIVEQGGERFPVRYFYTDVVVKREGRWQIVDSQLAKSSAAKATDSG
Ga0302176_100419064	3300030057	Palsa	GSEEDDVEQGGRRFPVRYIYMDVVVKREGRWQIVGSQLARTVGDQ
Ga0316363_102815121	3300030659	Peatlands Soil	GSEDDVVEQGGKRFPVRYLYMDVAMKRAGKWQIVGSQLAKPAERS
Ga0265745_10281791	3300030759	Soil	GSEEDELEQDGKRFRVRYLYMDVVVKREGQWQIFASQLAKLA
Ga0302307_102779131	3300031233	Palsa	ALVHGSEDDEVAQSGRRFQVRYVYTDVVIKRNGQWQIVASQLAKP
Ga0265339_103369021	3300031249	Rhizosphere	RDDVAIVHGSEDDVVEQGGRRFPALYVYMDVVMRRGGRWQIVGSQLAKPA
Ga0302318_104199012	3300031258	Bog	LPKEDLAIVHGSEDDEVEQDGRRFTVRYIYMDVVVKREGRWQIVASQLAKIS
Ga0302140_109793332	3300031261	Bog	DVEQGGQRFPVRYIYMDVVVKRDGRWQIVGSQLAKPM
Ga0310686_1026454732	3300031708	Soil	AVVHGSEEDKVEKGGRCLPVRYIYMDVVMKRNGKWQIVESQLAKCKLK
Ga0310686_1184612022	3300031708	Soil	GSEEDEVERGGRRFTVRYIYMDVVVRRKGKWQIVGSQLAKDTTDERSAEAR
Ga0307476_112469991	3300031715	Hardwood Forest Soil	HGSEDDDVEQGGQRFPVSYVYMDVVVKRDGRWQIVGSQLAKPS
Ga0307474_104240751	3300031718	Hardwood Forest Soil	GAAIVHGSEEDDVEQAGQRFPVRYIYMDAVVKRKGKWQIVASQLVKPDEIQ
Ga0307468_1001953851	3300031740	Hardwood Forest Soil	VHGSELDEVEADGRRFSVRYLYMDVVCKRNGQWQIVGSQLVKSQE
Ga0307473_108310531	3300031820	Hardwood Forest Soil	SEEDEVEQGGKRFSVRYVYTDVVIQRNGKWQIVGSQLAKPA
Ga0307478_110787361	3300031823	Hardwood Forest Soil	LSADVAIVHGSEEDDVEQGGQRFPVTYVYMDVVVKRDGRWQIVGSQLVKPADHS
Ga0318575_102921881	3300032055	Soil	VEEDEVEADGKRFPVRYLYMDVVCRREGRWWIVGSQLVAPITK
Ga0307471_1005114291	3300032180	Hardwood Forest Soil	GSEDDIVETDRQRFPARYVYLDVVVKRNGRWQIVGSLLAKPDAAA
Ga0307471_1031233431	3300032180	Hardwood Forest Soil	GRRIRLFGDFAIVHGSESDEVESGESRFSVRYFYMDVACKRSGKWQILGSQLVKPPSD
Ga0307472_1013706402	3300032205	Hardwood Forest Soil	HGSEDDEVEQDGKRFSVRYVYTDVVIKRTGKWQIVGSQLARPA
Ga0335078_104183284	3300032805	Soil	VHGSEDDIVEQGGKRFPVRYIYMDVVMKRGGRWQIVASQLAKRSDHS
Ga0335073_104354923	3300033134	Soil	AIVHGSEEDDIEQEGQRFPVEYIYMDVVMKREGRWQIVASQLARGA
Ga0334790_173962_457_600	3300033887	Soil	VAIVHGAEDDVVEQGGKQFPIRYLYMDVVMKRGGNWQIVGSQLAKPV
Ga0370483_0222276_9_143	3300034124	Untreated Peat Soil	VHGSEEDKVERGGKRLNVRYVYMDVVMKLDGRWQIVASQLAKPA
Ga0370484_0111780_9_152	3300034125	Untreated Peat Soil	VAIVHGSEDDVVEQDGKRFPVRYLYMDVVMKGGGRWQIVGSQLAKPV
Ga0370492_0138364_1_120	3300034282	Untreated Peat Soil	EQEGQRSSVRYFYMDVVLKREGRWQIVGSQLVAQSGFQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099583

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences