Metagenome / Metatranscriptome Family F099575

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099575
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	59 residues
Representative Sequence	DRVEGLADFGKPTGEFGTVEQTNEDDALVKWDGDGRMRLRQPWLKKVSNKAHPLAKPASA
Number of Associated Samples	84
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.68 %
% of genes near scaffold ends (potentially truncated)	88.35 %
% of genes from short scaffolds (< 2000 bps)	82.52 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.058 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (18.447 % of family members)
Environment Ontology (ENVO)	Unclassified (35.922 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.427 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 2.27% Coil/Unstructured: 97.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13545	HTH_Crp_2	3.88
PF02954	HTH_8	2.91
PF11154	DUF2934	1.94
PF02586	SRAP	1.94
PF01740	STAS	1.94
PF00589	Phage_integrase	1.94
PF00141	peroxidase	0.97
PF13188	PAS_8	0.97
PF10009	DUF2252	0.97
PF01834	XRCC1_N	0.97
PF02810	SEC-C	0.97
PF02735	Ku	0.97
PF01757	Acyl_transf_3	0.97
PF03328	HpcH_HpaI	0.97
PF07969	Amidohydro_3	0.97
PF03992	ABM	0.97
PF02371	Transposase_20	0.97
PF07992	Pyr_redox_2	0.97
PF00578	AhpC-TSA	0.97
PF13689	DUF4154	0.97
PF00581	Rhodanese	0.97
PF14294	DUF4372	0.97
PF00196	GerE	0.97
PF00072	Response_reg	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.94
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	0.97
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.97
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.97
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	83.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.59 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	5.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Unclassified	root	N/A	1.94 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	5.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Unclassified	root	N/A	1.94 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	5.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Unclassified	root	N/A	1.94 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_105769279	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300001084\|JGI12648J13191_1001472	All Organisms → cellular organisms → Bacteria	2808	Open in IMG/M
3300001124\|JGI12692J13336_1008388	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300001593\|JGI12635J15846_10822011	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300005178\|Ga0066688_10784126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300005436\|Ga0070713_100419349	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300005436\|Ga0070713_101087776	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300005542\|Ga0070732_10279797	All Organisms → cellular organisms → Bacteria → Acidobacteria	1000	Open in IMG/M
3300005542\|Ga0070732_10540516	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	707	Open in IMG/M
3300005557\|Ga0066704_10783426	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300005591\|Ga0070761_10240589	All Organisms → cellular organisms → Bacteria → Acidobacteria	1080	Open in IMG/M
3300005591\|Ga0070761_10692008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300005602\|Ga0070762_10029763	All Organisms → cellular organisms → Bacteria	2911	Open in IMG/M
3300005610\|Ga0070763_10799329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300006028\|Ga0070717_10979823	All Organisms → cellular organisms → Bacteria → Acidobacteria	770	Open in IMG/M
3300006176\|Ga0070765_100976161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300009137\|Ga0066709_100312124	All Organisms → cellular organisms → Bacteria → Acidobacteria	2142	Open in IMG/M
3300009618\|Ga0116127_1141811	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300009629\|Ga0116119_1050557	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300009641\|Ga0116120_1235838	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	575	Open in IMG/M
3300009643\|Ga0116110_1002105	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10101	Open in IMG/M
3300009644\|Ga0116121_1138407	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	768	Open in IMG/M
3300009762\|Ga0116130_1106051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300011120\|Ga0150983_16383141	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300012205\|Ga0137362_11150338	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300012356\|Ga0137371_10263059	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1346	Open in IMG/M
3300012683\|Ga0137398_10136053	All Organisms → cellular organisms → Bacteria → Acidobacteria	1583	Open in IMG/M
3300013105\|Ga0157369_10901732	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300014165\|Ga0181523_10715379	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300014168\|Ga0181534_10475002	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300014200\|Ga0181526_11096970	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300014489\|Ga0182018_10058692	All Organisms → cellular organisms → Bacteria → Acidobacteria	2330	Open in IMG/M
3300014489\|Ga0182018_10338999	All Organisms → cellular organisms → Bacteria → Acidobacteria	811	Open in IMG/M
3300014489\|Ga0182018_10433456	All Organisms → cellular organisms → Bacteria → Acidobacteria	700	Open in IMG/M
3300014489\|Ga0182018_10705298	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300014495\|Ga0182015_10006213	All Organisms → cellular organisms → Bacteria → Acidobacteria	12083	Open in IMG/M
3300014495\|Ga0182015_10052779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2962	Open in IMG/M
3300014501\|Ga0182024_10359840	All Organisms → cellular organisms → Bacteria → Acidobacteria	1898	Open in IMG/M
3300014501\|Ga0182024_10591658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1391	Open in IMG/M
3300014501\|Ga0182024_11044038	All Organisms → cellular organisms → Bacteria → Acidobacteria	970	Open in IMG/M
3300014501\|Ga0182024_11852650	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300014501\|Ga0182024_12000378	Not Available	641	Open in IMG/M
3300014638\|Ga0181536_10093303	All Organisms → cellular organisms → Bacteria → Acidobacteria	1736	Open in IMG/M
3300015371\|Ga0132258_10163245	All Organisms → cellular organisms → Bacteria → Acidobacteria	5359	Open in IMG/M
3300016702\|Ga0181511_1106040	All Organisms → cellular organisms → Bacteria → Acidobacteria	748	Open in IMG/M
3300016702\|Ga0181511_1437985	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300016750\|Ga0181505_10945496	All Organisms → cellular organisms → Bacteria → Proteobacteria	4522	Open in IMG/M
3300017925\|Ga0187856_1172107	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	802	Open in IMG/M
3300017931\|Ga0187877_1004973	All Organisms → cellular organisms → Bacteria	9941	Open in IMG/M
3300017931\|Ga0187877_1111382	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300017938\|Ga0187854_10360717	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300017946\|Ga0187879_10289597	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300017948\|Ga0187847_10059199	All Organisms → cellular organisms → Bacteria → Acidobacteria	2162	Open in IMG/M
3300017988\|Ga0181520_10740495	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	668	Open in IMG/M
3300017998\|Ga0187870_1316801	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300018002\|Ga0187868_1011039	All Organisms → cellular organisms → Bacteria → Acidobacteria	4703	Open in IMG/M
3300018019\|Ga0187874_10137920	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300018035\|Ga0187875_10277508	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	910	Open in IMG/M
3300018037\|Ga0187883_10043854	All Organisms → cellular organisms → Bacteria → Acidobacteria	2384	Open in IMG/M
3300018037\|Ga0187883_10485681	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300018043\|Ga0187887_10099735	All Organisms → cellular organisms → Bacteria → Acidobacteria	1751	Open in IMG/M
3300018046\|Ga0187851_10523622	All Organisms → cellular organisms → Bacteria → Acidobacteria	672	Open in IMG/M
3300018047\|Ga0187859_10029608	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2966	Open in IMG/M
3300018047\|Ga0187859_10407972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300018482\|Ga0066669_12230321	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300019887\|Ga0193729_1061305	All Organisms → cellular organisms → Bacteria → Acidobacteria	1504	Open in IMG/M
3300021407\|Ga0210383_11713875	Not Available	514	Open in IMG/M
3300021420\|Ga0210394_10163765	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300021475\|Ga0210392_10204506	All Organisms → cellular organisms → Bacteria → Acidobacteria	1380	Open in IMG/M
3300023090\|Ga0224558_1094031	All Organisms → cellular organisms → Bacteria → Acidobacteria	1064	Open in IMG/M
3300024295\|Ga0224556_1018771	All Organisms → cellular organisms → Bacteria → Acidobacteria	1758	Open in IMG/M
3300025928\|Ga0207700_11402463	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300027370\|Ga0209010_1026130	All Organisms → cellular organisms → Bacteria → Acidobacteria	1008	Open in IMG/M
3300027545\|Ga0209008_1130792	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300027559\|Ga0209222_1026372	All Organisms → cellular organisms → Bacteria → Acidobacteria	1129	Open in IMG/M
3300027587\|Ga0209220_1015574	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	2027	Open in IMG/M
3300027609\|Ga0209221_1000212	All Organisms → cellular organisms → Bacteria	32243	Open in IMG/M
3300027648\|Ga0209420_1124336	All Organisms → cellular organisms → Bacteria → Acidobacteria	719	Open in IMG/M
3300027667\|Ga0209009_1005588	All Organisms → cellular organisms → Bacteria	3007	Open in IMG/M
3300027676\|Ga0209333_1046068	All Organisms → cellular organisms → Bacteria → Acidobacteria	1206	Open in IMG/M
3300027853\|Ga0209274_10165836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1117	Open in IMG/M
3300027853\|Ga0209274_10671106	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300027895\|Ga0209624_10200505	All Organisms → cellular organisms → Bacteria → Acidobacteria	1325	Open in IMG/M
3300027905\|Ga0209415_10669683	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300028775\|Ga0302231_10433203	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300028776\|Ga0302303_10267464	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300028798\|Ga0302222_10428307	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300028906\|Ga0308309_10296056	All Organisms → cellular organisms → Bacteria → Proteobacteria	1367	Open in IMG/M
3300028906\|Ga0308309_11010599	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300028906\|Ga0308309_11672456	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300029882\|Ga0311368_10145993	All Organisms → cellular organisms → Bacteria → Acidobacteria	1942	Open in IMG/M
3300030054\|Ga0302182_10426016	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300030580\|Ga0311355_10376791	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300030618\|Ga0311354_11488850	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300030916\|Ga0075386_12178313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300031716\|Ga0310813_10632352	All Organisms → cellular organisms → Bacteria → Acidobacteria	950	Open in IMG/M
3300031962\|Ga0307479_12116791	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300032515\|Ga0348332_12208946	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300032756\|Ga0315742_10777814	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300033829\|Ga0334854_006707	All Organisms → cellular organisms → Bacteria → Acidobacteria	2816	Open in IMG/M
3300034124\|Ga0370483_0085585	All Organisms → cellular organisms → Bacteria → Acidobacteria	1027	Open in IMG/M
3300034124\|Ga0370483_0254879	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	601	Open in IMG/M
3300034282\|Ga0370492_0237844	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.06%
Host-Associated	Host-Associated	1.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.93%
Aquatic	Environmental → Aquatic	29.13%
Plants	Host-Associated → Plants	1.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.25%
Freshwater	Environmental → Aquatic → Freshwater	29.13%
Peat	Environmental → Terrestrial → Peat	9.71%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	29.13%
Loam	Environmental → Terrestrial → Soil → Loam	26.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	18.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	23.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	22.33%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	10.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.77%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	18.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.62%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.71%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.83%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	5.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.91%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001124	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009618	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100	Environmental	Open in IMG/M
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1057692791	3300000955	Soil	LADFGKPTGEFGTVEQTNEEDALVKWDHDGRMRLHQPWLKKISNKDDALTKLPSSQI*
JGI12648J13191_10014722	3300001084	Forest Soil	MGLGDFGKPTGGFGTVVKTNEDDALVKWDDDGRMRLRQPWLKKISNKVHPVPKAARA*
JGI12692J13336_10083881	3300001124	Forest Soil	KPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSSKVHPTPKPANA*
JGI12635J15846_108220112	3300001593	Forest Soil	NFGKPTGEFGTVEQTNEDDALVKWDDDGRVRLRQPWLKKVSDKVHVRGKSASA*
Ga0066688_107841261	3300005178	Soil	QTNEDDALVKWDDDGRMRLRQPWLKKVSDKVHALAKPASA*
Ga0070713_1004193492	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	EGLADFGKPTGEFGTVEQTNEEDALVKWDHDGRMRLHQPWLKKISNKDDAFAKPPSS*
Ga0070713_1010877761	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ELNPGDRVEGLADFGKPTGEFGTVEQTNEEDALVKWDHDGRMRLHQPWLKKISNKDDAFAKLPSS*
Ga0070732_102797971	3300005542	Surface Soil	ELELNPGDRVEGLADFGKPTGEFGTVEQTNEEDALVKWDHDGRMRLHQPWLRKISNKDDALAKLPSS*
Ga0070732_105405161	3300005542	Surface Soil	FGTVEQTNEDDALVKWDDDGRMRLHQPWLKKVSKKAHPFAKPASA*
Ga0066704_107834261	3300005557	Soil	LADFGKPTGVFGTVEQTNEDDALVKWDDDGRVRLRQPWLKKVSKKVHPLGKPASV*
Ga0070761_102405892	3300005591	Soil	NPGDRVMGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSSKVHPTPKPANA*
Ga0070761_106920082	3300005591	Soil	FGTVAQANEDDAVVKWDDDGRMRLRQPWLKKVTNKVHAIAKPASA*
Ga0070762_100297638	3300005602	Soil	MGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSSKVHPTPKPANA*
Ga0070763_107993292	3300005610	Soil	EAVVKWDDDGRMKIRQPWLKKVSKKAHPLAKSAGA*
Ga0070717_109798232	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LANFGTPTGELGTVEQTNEDDVLVKWDDDGRKRLRQPWLRKARKKIRPLGKPATLLGDS*
Ga0070765_1009761611	3300006176	Soil	SELNPGDRVEGLANFGKPTGEFGTVEQTNEDDALVKWDGDGRMRLRQPWLKKVNNKIHPLAKPASA*
Ga0066709_1003121245	3300009137	Grasslands Soil	KRPPLVQPSAPDSELKPGDRVEGLANFGKPTEEFGTVEQTNEDDALVKWDDDGRMRLRQPWLKKVSDKVHALAKPASA*
Ga0116127_11418112	3300009618	Peatland	PPLVQPSAPDSELNPGDRVEGLADFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLHQPWLKKVSKKAHPLAKSANA*
Ga0116119_10505573	3300009629	Peatland	QPSAPDSELNPGDRVEGLGNFGKPTGEFGTVEQTNEDEALVKWDGDGRMRLRQPWLEKVSNKAHPLAKPASASLPKDTARS*
Ga0116120_12358382	3300009641	Peatland	EQTNEDDALVKWDDDGRMRLRQPWLKKVSNKVHPFAKPASA*
Ga0116110_10021054	3300009643	Peatland	MGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLHQPWLKKVSKKAHPLAKSANA*
Ga0116121_11384071	3300009644	Peatland	PSATGGELNPGDRVEGLGNFGVPTGQLGTVERANEEDAVVKWDDDGRMRLRQPWLKKVGKKTHPPAKPASA*
Ga0116130_11060512	3300009762	Peatland	FGKPTGEFGTVEQTNDDDALVKWDNDGRMRLHQPWLKKISKKAHPFAKPASA*
Ga0150983_163831411	3300011120	Forest Soil	LGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSNKVHPLRKPASA*
Ga0137362_111503382	3300012205	Vadose Zone Soil	MPPLVQPSPPESELTPGDRVEELADFGRPTGVFGTVEQTNEDDALVKWDDDGRVRLRQPWLKKVSKKVHPLGKPASV*
Ga0137371_102630591	3300012356	Vadose Zone Soil	PSATASEVTPGDRVEELAYFGKPTGVFGTVEQTNEDDALVKWDDDGRVRLRQPWLKKVSKKVHPLGKPASV*
Ga0137398_101360531	3300012683	Vadose Zone Soil	MGLADFGKPTGEFGTVEKTNEDDALVKWDDDGRMRLRQPGLKKVSNKVRPLRKLASE*
Ga0157369_109017322	3300013105	Corn Rhizosphere	ELNPGDRVEGLADFGKPTGEFGTVEQTNEDDALVKWDHDGRMRLHQPWLKKISNKSKG*
Ga0181523_107153791	3300014165	Bog	EGLADFGKPTGEFGTVEQTNEDDALVKWDHDGRMRLRQPWLKKVSNKDHAIGKPASV*
Ga0181534_104750021	3300014168	Bog	TGEFGTVEQTNEDDALVKWDDDGRMRLHQLWLKKASKKVHAFSKPAGA*
Ga0181526_110969702	3300014200	Bog	ADSDRAKRPPLVQPSAPDSELNPGDRVEGLADFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLHQPWLKKVSKKAHPFAKPAIA*
Ga0182018_100586924	3300014489	Palsa	PDSELNPGDRVEGLANFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLHRPWLKKVGDKVHAPAKPTSA*
Ga0182018_103389992	3300014489	Palsa	LVQPSAPDSELNPGDRVEGLANFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLRQPWLKKVSNKVHALGKPASA*
Ga0182018_104334561	3300014489	Palsa	GDRVEGLANFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLRQPWLKKVGKKAHPLAKPASA*
Ga0182018_107052981	3300014489	Palsa	LVQPSGPDSDLNPGDRVEGLANFGKPTGEFGTVEQTNEDDALVKWDDDRRMRLHQPWLKKVSN*
Ga0182015_1000621317	3300014495	Palsa	FGKPTGEFGTVEQTNEDDALVKWDDDGRMRLHQPWLKKVSKKIRSLGKPASA*
Ga0182015_100527791	3300014495	Palsa	KPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVRNKVHPLAKPSGA*
Ga0182024_103598401	3300014501	Permafrost	TGAPAEADRAKRPPLDQPTAPDSELNPGDRVMGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSNKAHPLPKPARA*
Ga0182024_105916581	3300014501	Permafrost	GLANFGTPTGEFGTVEQTNEDDALVKWDDDGRMRLHQPWLKKIGKKAHPLAKPASA*
Ga0182024_110440381	3300014501	Permafrost	GLPNFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLHQPWLKKVGKKIRPLGKPASA*
Ga0182024_118526501	3300014501	Permafrost	PGDRVEGLANFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLRQPWLKKVGKKAHPLAKPASA*
Ga0182024_120003781	3300014501	Permafrost	PPLVQPSSPDSELNPGDRVEDLANFGPTEEFGTVEQANEDDAVAKRDDDGRMRLRQPWLKKSTNKVHALAKPASA*
Ga0181536_100933031	3300014638	Bog	GKPTGEFGTVEQTNEDDALVKWDDDGRMRLHQPWLKKVSKKAHPFAKPASA*
Ga0132258_101632453	3300015371	Arabidopsis Rhizosphere	VELNPGDRVEGLANFGEPTGEFGTVEQTNEDDALVKWDNDGRMRMHQPWLKKVSKKAHPLVKPASAVLIRTTSA*
Ga0181511_11060402	3300016702	Peatland	ANEEDAVVKWDDDGRMRLRQPWLKKVGKKTHPPAKPASA
Ga0181511_14379851	3300016702	Peatland	GTVEQTNEDEALVKWDGDGRMRLRQPWLEKVSNKAHPLAKPASASLPKDTARS
Ga0181505_109454967	3300016750	Peatland	NPGDRVEGLGNFGKPTGEFGTVEQTNEDDALVKWDDDVRMRLHQPWLKKVSKKAHPLAKPASS
Ga0187856_11721072	3300017925	Peatland	EFGTVEQTNEDDALVKWDDDGRMRLHQPWHKKVSKKTHPFAKPARA
Ga0187877_10049734	3300017931	Peatland	MGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLHQPWLKKVSKKAHPLAKSANA
Ga0187877_11113823	3300017931	Peatland	PDSELNPGDRVEGLGNFGKPTGEFGTVEQTNEDEALVKWDGDGRMRLRQPWLEKVSNKAHPLAKPASASLPKDTARS
Ga0187854_103607171	3300017938	Peatland	LSPGDRVEGLANFGKPTGEFGTVEQTNEDDALVKWDHDGRMRLRQPWLKKVSNKVYALGKLARA
Ga0187879_102895972	3300017946	Peatland	DRVEGLADFGKPTGEFGTVEQTNEDDALVKWDGDGRMRLRQPWLKKVSNKAHPLAKPASA
Ga0187847_100591991	3300017948	Peatland	GTVERANEEDAVVKWDDDGRMRLRQPWLKKVGKNTQPAAKPTSA
Ga0181520_107404952	3300017988	Bog	FGTVEQTNDDDALVKWDNDGRMRLRQPWLKKVSKKAHPFAKPASA
Ga0187870_13168012	3300017998	Peatland	EADRARRPPLVQPPVTDSELNPGDRVEGLADFGKPTGEFGTVEQTNEDDALVKWDNAGRMRLHQPWLKKVSNKAHPLAKPASA
Ga0187868_10110391	3300018002	Peatland	PKAPDLELNPGDRVEGLGNFGKPTGEFGTVEQTNEDDALVKWDDDSRTRLHQPWLKKVGNKVHALGKPTNA
Ga0187874_101379203	3300018019	Peatland	DRVEGLADFGKPTGEFGTVEQTNEDDALVKWDGDGRMRLRQPWLEKVSNKAHPLAKPASASLPKDTARS
Ga0187875_102775083	3300018035	Peatland	QPSAPDSELNPGDRVEGLADFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLHQPWLKKVSKKAHPFAKPAIA
Ga0187883_100438544	3300018037	Peatland	FGKPTGEFGTVEQTNEDDALVKWDHDGRMRLRQPWLKKVSNKIHALGKPASV
Ga0187883_104856812	3300018037	Peatland	LADFGKQTNEDDVLAKWDDDRRMRLRQPWLKKVSNKDHAIGKPASV
Ga0187887_100997351	3300018043	Peatland	QTNEDDALVKWDHDGRMRLRQPWLKKVSNKVYALGKLARA
Ga0187851_105236222	3300018046	Peatland	PTGEFGTVEQTNEDDALVKWDHDGRMRLRQPWLKKVSNKVYALGKLARA
Ga0187859_100296081	3300018047	Peatland	TGGELNPGDRVEGPGNFGMPTGQLGTVERANEEDAVVKWDDDGRMRLRQPWLKKVGKNTEPAAKPTSA
Ga0187859_104079722	3300018047	Peatland	QTNDDDALVNWDDDGRMRLHQLWLKKTSNKVLALVKPSQCIVPRS
Ga0066669_122303211	3300018482	Grasslands Soil	VQPSAPDSELTPGDRVEELADFGKPTGVFGTVEQTNEDDALVKWDDDGRVRLRQHWLKKVSKKVHPLGKPASV
Ga0193729_10613051	3300019887	Soil	MGLADFGKPTGEFGTVEKTNADDALVKWDDDGRMRLRQPWLKKVSNKVHPLRKLASE
Ga0210383_117138752	3300021407	Soil	EDDALVKWDDDGRMRLRQPWLKKVSNKVHPLPKPAGA
Ga0210394_101637654	3300021420	Soil	GTVEQTNDDDALVKWDDDGRMRLHQPWLKKVSKKAHPLAKPASA
Ga0210392_102045062	3300021475	Soil	GLADFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLHQPWLKKVSRKARPLAKLARA
Ga0224558_10940311	3300023090	Soil	PDLELNPGDRVEGLGNFGKPTGEFGTVEQTNEDDALVKWDDDVRMRLHQPWLKKVSKKAHPLAKPASS
Ga0224556_10187712	3300024295	Soil	MGLGDFGKPTGGFGTVVRTNEDDALVKWDNDGRMRLRQPWLKKVSNKVHPLSKPASA
Ga0207700_114024632	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RAKRPSLAQPPTPELELNPGDRVEGLADFGKPTGEFGTVEQTNEEDALVKWDHDGRMILHQPWLKKISNKDDAFAKFPSS
Ga0209010_10261302	3300027370	Forest Soil	RVWLILENQDDALVKWDDDGRMRLGQPWLKKVSHTVHVRAKPASA
Ga0209008_11307922	3300027545	Forest Soil	LDQPPAPDSELNPGDRVMGLGDFGKPTGGFGTVVRTNEEDALVKWDDDGRMRLRQPWLKKVSNKVHPLPKPAGT
Ga0209222_10263722	3300027559	Forest Soil	TVVRTNEDDALVKWDDDGRMRLRQPWLKKVSSKVHPTPKPANA
Ga0209220_10155741	3300027587	Forest Soil	NDDDALVKWDDDGRVRLRQPWLKKVGKKIRPLGKSASA
Ga0209221_100021213	3300027609	Forest Soil	MGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSSKVHPTPKPANA
Ga0209420_11243361	3300027648	Forest Soil	PQSQLNPGDRVEGLANFGKPTGEFGTVEQTNEDDALVKWDDDGRTRLHQPWLKKVGKKARPLPVSA
Ga0209009_10055881	3300027667	Forest Soil	KRPPLVQPPAPDSELNPGDRVEGLANFGKPTGEFGTVEQTNEDDALVKWDDDGRVRLRQPWLKKVSDKVHVRGKSASA
Ga0209333_10460681	3300027676	Forest Soil	TVERTNEDDALVKWDDDGRMRLRQPWLKKISNKVHPVPKAARA
Ga0209274_101658361	3300027853	Soil	VEQTNEDDALVKWDGDGRMRLRQPWLKKVSNKVHPLAKPASA
Ga0209274_106711061	3300027853	Soil	SELNPGDRVMGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSSKVHPTPKPANA
Ga0209624_102005054	3300027895	Forest Soil	DRAKSPPLDRPPAPASELNPGDRVMGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSNKVHPLPKPVGA
Ga0209415_106696831	3300027905	Peatlands Soil	EFGTVEQTNEDDALVKWDGDGRMRLRQPWLKKVSNKAHPLAKPASA
Ga0302231_104332031	3300028775	Palsa	KRPPLVQPSAPDSELNPGDRVEGLGNFGKPTGEFGTVEQTNEDDALVKWDSAGRMRLRQPWLKKVSNKAHPFAKPASA
Ga0302303_102674641	3300028776	Palsa	NPGDRVEGLGDFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLRQPWLKKVGNKAHPLAKPANA
Ga0302222_104283072	3300028798	Palsa	FGTVEKTNAEDALVKWDDDGRMRLHQPWLKKVSKKAHPLAKPASA
Ga0308309_102960563	3300028906	Soil	SEKTNEDDALLKWDDDGRMRLHQPWLKKVSKKIRPLGKPASA
Ga0308309_110105991	3300028906	Soil	RAKSPPLDQPPAPDSELNPGDRVMGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSNKLHPLRKPASA
Ga0308309_116724562	3300028906	Soil	KPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSNKVHPLPKPAGA
Ga0311368_101459934	3300029882	Palsa	DDDALVKWDDDGRMRLHQPWLKKVGRKAHPLAKPASA
Ga0302182_104260161	3300030054	Palsa	EFGTVEQTNEDDALVKWDDDGRMRLRQPWLKKVGNKAHPLAKPANA
Ga0311355_103767913	3300030580	Palsa	QPSAPDSELNPGDRVEGLGNFGKPTGEFGTVEQTNEDDALVKWDSAGRMRLRQPWLKKVSNKAHPFAKPASA
Ga0311354_114888502	3300030618	Palsa	RVEGLANFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLRQPWLKKVGKKAHPLAKPESA
Ga0075386_121783132	3300030916	Soil	PGDRVEGLANFGKPTGEFGTVEQTNEDEALIKWDDDGRMRLRQPWLKKVSKKVHALAKPAGA
Ga0310813_106323521	3300031716	Soil	SLAQPPAPRFELNPGDRVEGLADFGKPTGEFGTVEQTNEEDALVKWDHDGRMRLHQPWLKKISKRAKDDPFAKFPSS
Ga0307479_121167911	3300031962	Hardwood Forest Soil	GKPTGGFGTVVRTNEDDALVKWDDDGRMKLRQPWLKKVSNKLHPLRKPASA
Ga0348332_122089461	3300032515	Plant Litter	PDSKLNPGDRVMGLGDFGKPTGGFGTVVRTNADDALVKWDDDGRMRLRQPWLKKVSKKVHPLPKPAGA
Ga0315742_107778143	3300032756	Forest Soil	GDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSNKVHPLPKPVGA
Ga0334854_006707_2039_2206	3300033829	Soil	LGDFGKPTGEFGTVEQTNEDDALVKWDDDGRMRLRQPWLKKVGNKAHPLAKPANA
Ga0370483_0085585_770_1027	3300034124	Untreated Peat Soil	AADADRAQRPPLVQPPAPDSELNPGDRVMGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSEKIHPPPKPASA
Ga0370483_0254879_391_600	3300034124	Untreated Peat Soil	APDSKLNPGDRVEGLGDFGKPTGGFGTVVRTNEDDALVKWDDDGRMRLRQPWLKKVSKKIHPLPKPASA
Ga0370492_0237844_577_741	3300034282	Untreated Peat Soil	ADFGKPTGEFGTVEQTNEDDALVKWDHDGRMRLRQPWLKKVSNKVYALGKPASA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099575

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences