Basic Information | |
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Family ID | F099574 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 103 |
Average Sequence Length | 63 residues |
Representative Sequence | MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLETAQAML |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 96.04 % |
% of genes near scaffold ends (potentially truncated) | 94.17 % |
% of genes from short scaffolds (< 2000 bps) | 90.29 % |
Associated GOLD sequencing projects | 91 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.57 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (98.058 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.476 % of family members) |
Environment Ontology (ENVO) | Unclassified (25.243 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (65.049 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 62.07% β-sheet: 0.00% Coil/Unstructured: 37.93% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.57 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Peatland Iron-Sulfur Acid Spring Soil Vadose Zone Soil Surface Soil Peatlands Soil Agricultural Soil Soil Grasslands Soil Soil Forest Soil Hardwood Forest Soil Peatland Tropical Peatland Bog Forest Soil Permafrost Soil Palsa Permafrost Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Fen Palsa Bog Biofilm Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12270J11330_102082972 | 3300000567 | Peatlands Soil | MENLIPLFVALTGAAVLLQAGILTALYLAMRKSSARMEALAEEVKTKAVPALETAQAILTELRPKLQ |
JGI25616J43925_103012301 | 3300002917 | Grasslands Soil | MENLTTIFIAVTAGAVILQACLLLAMYLAMRKTSTRLESLAEEVKTKALPTIDSAQALLADIRPKL |
Ga0006866J48919_1193072 | 3300003295 | Peatlands Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEAIADNLMAT |
Ga0058884_13353181 | 3300004135 | Forest Soil | MENLTMVFIAVTAAAVLLQAGILTALYLAMRKSSARMEAVALELKTKALPTLE |
Ga0058884_13630991 | 3300004135 | Forest Soil | MENLTPLFIALTGAAVALQAGLLAAMYLSMRKSSTRLEALANEVKTKALPTLETAQAILTELRPKL |
Ga0068919_12534231 | 3300004473 | Peatlands Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLE |
Ga0068968_14630421 | 3300004474 | Peatlands Soil | MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLETTREILAELRPKL |
Ga0068972_12792131 | 3300004478 | Peatlands Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEAIADNL |
Ga0068979_11510951 | 3300004558 | Peatlands Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLET |
Ga0068976_11279802 | 3300004594 | Peatlands Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEA |
Ga0068925_12151842 | 3300004611 | Peatlands Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEAIADNLMATSTIVRDEAQRIDAAVND |
Ga0068925_12608861 | 3300004611 | Peatlands Soil | MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPALETTREILAELRPKLTVIAD |
Ga0068963_12797682 | 3300004618 | Peatlands Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTL |
Ga0058899_115275942 | 3300004631 | Forest Soil | METLTPLFIALTGAAVVLQAGILAAMYLAVRKSSARMDALAVEVKTKALPTLETAQAVLIELRPRLQEIA |
Ga0072324_11545241 | 3300004971 | Peatlands Soil | MENLIPLFVALTGAAVLLQAGILTALYLAMRKSSARMEALAEEVKTKAVPALETAQAILTELR |
Ga0072329_12663972 | 3300004977 | Peatlands Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEAIADNLMATST |
Ga0070707_1002995841 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MENLTPLFIALTGAAVLLQACLLAAMYLAMRKSSARMEAIATEVKGKAIPTLELAQSMLTEVRPK |
Ga0070732_107209751 | 3300005542 | Surface Soil | MENLTPLFIALTGIAVLLQAGVLVAIFVVLRTTSTKMEALATEVKTKVLPAIAQAEAMLTEIRPKVASIA |
Ga0066691_102987303 | 3300005586 | Soil | MENLTTWFIGITGLAVLLQAGVLLMMYLSMRKSSARMEAIATEVKTKAI |
Ga0070762_102539933 | 3300005602 | Soil | MENLTILFIAVTSAAVVLQAGILTALYVAVRRSTARMEALAVEVQAKALPALATSQAMLNELGPKLTVIA |
Ga0075038_102470522 | 3300005650 | Permafrost Soil | MDNLTPIFIALTGAAVVLQAGVLVAMYLSIRKTSASMEAMAAELRAKVLPTIDTVNAMV |
Ga0070766_107191372 | 3300005921 | Soil | MENLIPLFVALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKTKALPALETAQTLLKELTPKLHIIAENLTETTH |
Ga0070765_1010543793 | 3300006176 | Soil | MENLIPLFIALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKTKALPALETAQTLLKELTPKLHII |
Ga0079222_101862881 | 3300006755 | Agricultural Soil | METYLPAFVGVTAGAVLLQALILVALYLSVRKTTSRLEALAEEVKTKALPT |
Ga0066660_115413492 | 3300006800 | Soil | MENLTTWFIGITGLAVLLQAGVLLMMYLSMRKSSARMEAIATEVKTKAIPALESTQTNLTEIRPKL |
Ga0116215_14941421 | 3300009672 | Peatlands Soil | MENLIPLFVALTGAAVLLQAGILTALYLAMRKSSARMEALAEEVKTKAVPALETAQAILTELRPKLQT |
Ga0074044_109812801 | 3300010343 | Bog Forest Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMESLAEEVKTKALPTLETAQSMLAEIRPKVEVIADN |
Ga0138574_10032642 | 3300011076 | Peatlands Soil | MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRP |
Ga0138526_11335272 | 3300011082 | Peatlands Soil | MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLETAQAML |
Ga0150983_129529032 | 3300011120 | Forest Soil | MENLIPLFIALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKSKALPALETAQTLLKELTPKLHIIAENLTETTHSVRAQVERVDATVSDAVDRP |
Ga0137393_117311422 | 3300011271 | Vadose Zone Soil | MLMENLTPLFIALTGAAVLLQACLLAAMYLAMRKTSARMEAIATEVKGKAIPALELAQ |
Ga0137398_106651492 | 3300012683 | Vadose Zone Soil | MDNLTTIFIAVTAVAVILQAGLLLGMYLAMRKTSTRLESLAEEVKTKALPAIDSAQTLIADIRPKLQIIADNLAE |
Ga0182015_100407175 | 3300014495 | Palsa | MENLTPLFIALTGAAVLLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLETAQAVLAELRPQLIVIADDRTETTHSVRSQVERMDA |
Ga0137418_112072582 | 3300015241 | Vadose Zone Soil | MLMENLTPLFIAMTGAAVLLQACLLAAIYLAMRKSTARLEALATEVKSKAIPALESAQSILTEIRPKIRVVADNVQETTSMLRAEIERVDATINDV |
Ga0187886_11259833 | 3300018018 | Peatland | MENLIPLFVALTGAAVLLQAGVLVALYLAVRKTSARLEAVSEEVKAKALPALDTAHSMLT |
Ga0187858_100520575 | 3300018057 | Peatland | MENLIPLFVALTGAAVLLQAGVLVALYLAVRKTSARLEAVSEEVKAKALPALD |
Ga0187769_106947601 | 3300018086 | Tropical Peatland | MENLTPLFIALTGAAVLLQALLLAAIYLAMRKSSARMEGLAMEVKTKALPMLET |
Ga0184597_1020822 | 3300019162 | Soil | MENLTPLFIALTGAAVVLQAGVLVAMYRVMRKSSARMEALAVEVKTRALPTIETAQAIL |
Ga0184589_1078442 | 3300019165 | Soil | MENLTPLFIALTGAAVVLQAGILAALYVAMRKSSARMEALAIEVKTKALPTLETAQAMLAELRPQLMIIADNLTETTHSVRSQVERMDATVND |
Ga0184592_1057851 | 3300019177 | Soil | MENLTPLFIALTGAAVVLQAGILAALYVAMRKSSARMEALAIEVKTKALPTLETAQAMLAELRPQLMIIADNLTETTHSVRS |
Ga0184598_1198612 | 3300019182 | Soil | MENLTPLFIALTGAAVVLQAGILAALYVAMRKSSARMEALAIEVKTKALPTLETAQAMLAELRPQLMIIADNLTETTHSV |
Ga0184601_1128081 | 3300019183 | Soil | MENLTPLFIALTGAAVVLQAGILAALYVAMRKSSARMEALAIEVKTKALPTLETAQAMLAELRPQLMIIA |
Ga0184601_1312221 | 3300019183 | Soil | MENLTPLFIALTGAAVVLQACVLVAMYLAIRKSSARMEALALEVKTKALPTIETAQAILT |
Ga0181510_12894832 | 3300019240 | Peatland | MENLIPLFIALTGAAVVLQAGILAALYLSVRKTSARMEALAVEVKAKALPALDMSQALL |
Ga0187800_12517372 | 3300019278 | Peatland | MENLTPLFIALTGAAVVLQAGLLAAMYLAMRKTSSRMEALAEEVKTKALPALETTQSMLAEIRP |
Ga0187800_15432292 | 3300019278 | Peatland | MESLTPLFIALTGAAVLLQACLLAAMYLAMRKSSARMEALATEVKSKALP |
Ga0187800_15640071 | 3300019278 | Peatland | MENLTPLFIALTGAAVLLQALLLAAIYLAMRKSSARMEGLAMEVKTKALPMLETAQAMLAELRPRLQ |
Ga0182025_11635801 | 3300019786 | Permafrost | MENLLPLFVALTGAAVMLQAGLLAAMYLAMRKTTTKMEALAEEVKTKALPTI |
Ga0210403_104317071 | 3300020580 | Soil | MENQAPLLIVFIALTGAAVLLQAGILAAMYLAMRKSSARMEELAAEVKTKALP |
Ga0210396_117696712 | 3300021180 | Soil | MENLTMVFIAVTAAAVVLQAFILAFMYLAMRKSTARMEAVALEVKTKALPTLETAQALLTEM |
Ga0187846_100257006 | 3300021476 | Biofilm | MENITIFIAVTSGAVVLQALILAAMYLAMRKSSARMEALATEVKTKALPTIESANALLNDLRPKL |
Ga0242660_10355623 | 3300022531 | Soil | MENLTTVFIAITGAAVILQAGLLAAMYLAMRKTSTRLESLAEEVKTKVLPTV |
Ga0212123_109375002 | 3300022557 | Iron-Sulfur Acid Spring | MENLTPVFIALTGIAVLLQAGVLVAIFVALKKTSTKMEALAEEVKTKVLPTIVQAEAMLA |
Ga0242675_10248222 | 3300022718 | Soil | MENLNVFVSLTGIAVLLQAGILAALYLAMRKSSASMEALAVEVKTKALPTLETVQEIQPSSVPS |
Ga0242666_11660881 | 3300022721 | Soil | MENLLPIFVALTGAAVLLQAGLLAAMYLAMRKTTTKMEALAEEVKTRALP |
Ga0242657_11883362 | 3300022722 | Soil | MENLIPLFIALTGAAVVLQACVLLALYLSVRKTSARMEGLAIEVKAKALPALRSAQSILVDLRP |
Ga0224569_1012935 | 3300022732 | Rhizosphere | MENLTPLFIALTGAAVVLQACVLVAMYLAIRKSSARMEALALEVKTKALPTIETAQAILTEL |
Ga0247540_1035281 | 3300023542 | Soil | MENLTPLFIALTGAAVVLQAGVLVAMYRVMRKSSARMEALAVEVKTRALPTIETAQ |
Ga0224564_11319511 | 3300024271 | Soil | MENLIPLFVALTGAAVLLQAGVLVALYLAVRKTGARLEAVSEEVKAKAL |
Ga0224556_11243461 | 3300024295 | Soil | MENLIPLFIALTGAAVLLQAGMLVALYLSVRKSSVRMEALAVEVKTKALPAIET |
Ga0208691_10129141 | 3300025612 | Peatland | MENLLPLFIALTGAAVVLQALILLAMYLAVRKSTARMEAIAEEVKTKAFPTIDTTQALL |
Ga0207646_103912224 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MENLTPLFIALTGAAVLLQACLLAAMYLAMRKSSARMEAIATEVKGKAIPTLEL |
Ga0209648_100253307 | 3300026551 | Grasslands Soil | MENLTPLFIALTGAAVLLQAGLLAAMYLAMRKSSARMEAIATEVKGKAIPTLELAQSMLTEVRP |
Ga0209419_11019511 | 3300027537 | Forest Soil | MENLTTIFIAITGAAVLLQAGLLAAMYLTMRKTSARLESLAEEVKTRVLPTVDSAQSLLNDI |
Ga0209735_10229111 | 3300027562 | Forest Soil | MDNLTTIFIAITGAAVILQAGLLAAMYLAMRKTSSRLESLAEEVKTKALPAIDSTQALLTEIRPKLQGIA |
Ga0209625_10672542 | 3300027635 | Forest Soil | MENLTPLFIALTGVAVLLQAGLLAAMYLTMRKTSARLEALSDEVKTKALPTIETAQAMLTELRPTLEVIVRNVEETTSTIR |
Ga0209007_10286661 | 3300027652 | Forest Soil | MENLIPLFVALTAIAVLLQAGVLVALYLAVRKTGARLEAVSEEVKTKALPTFDTAHSLLT |
Ga0209736_10195561 | 3300027660 | Forest Soil | MENLTTIFIAITGAAVLLQAGLLAAMYLTMRKTSARLESLAGEVKSKVIPTIDSAQTLLTEI |
Ga0209655_101227242 | 3300027767 | Bog Forest Soil | MENLIPLFIALTGAAVLLQAGILTALYLGVRKTSARMEALAEEVKTKAVPALETAQAMLTELRPRLQVVADNLMETTIA |
Ga0209180_104668013 | 3300027846 | Vadose Zone Soil | MDNLTTIFIAVTAGAVVLQACLLLAMYLAMRKTSTRLESLAEEVKTKALPTIDSAQAL |
Ga0209590_102712243 | 3300027882 | Vadose Zone Soil | MDNLTTIFIAVTAGAVILQACLLLAMYLAMRKTSTRLESLAEEVKTKALPTIDSAQAL |
Ga0302221_105416541 | 3300028806 | Palsa | MENLTPLFIALTGAAVALQAGVLVAIYLSMRKTSARMEALAVEVKTKAVPTLETAQA |
Ga0302228_101619333 | 3300028808 | Palsa | MENLTMVFIAVTSAAVVLQAFVLVFMYLAMRKTSARMEAIAEEVKGKAVPALDLAQ |
Ga0308309_114288412 | 3300028906 | Soil | MENLIPLFIALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKTKALPALETAQTLLKELTPKLHIIAENLTE |
Ga0222749_106678662 | 3300029636 | Soil | MRVIFMENLIPLFIALTGAAVVLQACLLAAMYLAMRKSSARMEAIATEVKNKAIPTLEQAQLLLSEVRPRLQ |
Ga0222748_11099681 | 3300029701 | Soil | MENLIPLFIALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKSKALPALET |
Ga0311327_106421841 | 3300029883 | Bog | MENLIPLFIALTGAAVLLQAGMLVALYLSVRKSSVRMEALAVEVKTKALPAI |
Ga0311340_106840381 | 3300029943 | Palsa | MDNLTPIFIALTGAAVLLQAGLLAAMYLSLRKSSSRIETLATEVKTKVLPTVETAQAM |
Ga0302281_101382093 | 3300030044 | Fen | MENLTMVFIAVTSAAVVLQAFVLVFMYLAMRKTSARMEAIAEEVKGKA |
Ga0210257_104917752 | 3300030549 | Soil | MENLITIFIAVTGAAVLLQACLLAAMYLAMRKSSARIESLASDVAGKALPAL |
Ga0210265_11271562 | 3300030605 | Soil | MENLTPLFIALTGAAVVLQAGLLAAMYLAMRKTSTRMEALAEEVKSKALPTLEATQSLLAEI |
Ga0210268_13601571 | 3300030629 | Soil | MENLLPLFVGLTAIAVALQAGILVALYISVRKTSAKVEVLAEEVKTKALPALETAHSV |
Ga0302310_103792511 | 3300030737 | Palsa | MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSSRMEALAIEVKTKALPTLETAQSILTELRPKLQII |
Ga0265460_116322541 | 3300030740 | Soil | MENLTPLFIALTGAAVVLQAGLLAAMYLAMRKTSTRMEALAEEVKSKALPTLEAKKKKKGRVKVKG |
Ga0265460_122407522 | 3300030740 | Soil | MENLIPLFVALTGIAVLLQAGVLVALYFAVRKTSSRLEAVSEEVKTKALPTIDAA |
Ga0265460_123680111 | 3300030740 | Soil | MENLLPLFVGLTAIAVALQAGILVALYISVRKTSAKVEVLAEEVKTKALPALETAHSVLTEL |
Ga0265459_135356121 | 3300030741 | Soil | MENLTPLFIALTGAAVLLQAGLLAAMYLSMRKSSARLEALANEVKTKALPALETRKLKKMVVNGRSR |
Ga0265763_10434831 | 3300030763 | Soil | MVFIAVTAAAVLLQAGILAALYLAMRKSSDRMEALAVEVKTKALPALETAQAILTE |
Ga0265756_1128161 | 3300030805 | Soil | MENLLPIFVALTGAAVLLQAGLLAAMYLAMRKTTTKMEALAEEVKTKALPTID |
Ga0265765_10708691 | 3300030879 | Soil | MENLTTWFIAVTAAAVLLQAGLLAAMYLAMRKSSARMEALAVEVKTKALPTLETAQAI |
Ga0265769_1202811 | 3300030888 | Soil | MENLTTWFIAVTAAAVLLQAGLLAAMYLAMRKSSARMEALAVEVKTKALPTL |
Ga0138301_19007721 | 3300031022 | Soil | MENLIPLFIALTGIAVLIQAVVLLCLYIGVRKSSARMEALADEVKSKALPALEKKGAIGK |
Ga0265747_1105141 | 3300031044 | Soil | MENLIPLFVALTAIAVLLQAGVLVALYFAVRKASSRLEAVSEEVKTKALPTIDAAQSL |
Ga0308189_103037431 | 3300031058 | Soil | MENLLPVFIALTGVAVLLQASLLGAMYLAIRKSSARMEAIATEVKDKTLPVLDSTESILAEIRPKLQVIAQNLEDTTRIVR |
Ga0170824_1096156192 | 3300031231 | Forest Soil | MENLIPLFIALTGIAILLQAVVLLLLYLAVRKSSAHMEAVADEVKTKALPALEAAQTLLKELN |
Ga0302320_102318291 | 3300031524 | Bog | MENLLPIFVALTGIAVLLQAGLLLGMYLTMRKTGARLEELATEVKTKALPAIESTKST |
Ga0310686_1021349152 | 3300031708 | Soil | MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLEAVQGMLTELRPKLT |
Ga0310686_1159898261 | 3300031708 | Soil | MENLTPLFIALTGAAVLVQAGLLAGMYLSMRKSSARLEALAEEVKTKVLPTVET |
Ga0307476_101683795 | 3300031715 | Hardwood Forest Soil | MENLTTVFIAITGAAVILQAGLLAAMYLAMRKTSTRLESLAEEVKTKVLPTVDSAQ |
Ga0307474_105486401 | 3300031718 | Hardwood Forest Soil | MMENLTPLFIALTGAAVVLQAGLLAAMYLAMRKSSTRMEKLAEEVKNKALPALDSAQLLLTEIRPKLQVISD |
Ga0307478_115037362 | 3300031823 | Hardwood Forest Soil | MENLNIFVALTGIAVLLQAGILAALYLAMRKSSASMEALAVEVKTKALPTLETVQEILTELR |
Ga0316029_1102582 | 3300031870 | Soil | MENLIPLFVALTGAAVVLQAGLLTALYLAVRKSSARMEALAIEVKTKALPTLETT |
Ga0247536_1044942 | 3300032027 | Soil | MENLTPLFIALTGAAVVLQAGVLVAMYRVMRKSSARMEALAVEVKTRALPTIETAQAILTELRP |
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