Metagenome / Metatranscriptome Family F099574

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099574
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	63 residues
Representative Sequence	MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLETAQAML
Number of Associated Samples	95
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.04 %
% of genes near scaffold ends (potentially truncated)	94.17 %
% of genes from short scaffolds (< 2000 bps)	90.29 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.058 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.476 % of family members)
Environment Ontology (ENVO)	Unclassified (25.243 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.049 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.07% β-sheet: 0.00% Coil/Unstructured: 37.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF12732	YtxH	92.23
PF03840	SecG	1.94
PF13408	Zn_ribbon_recom	0.97
PF07690	MFS_1	0.97
PF00480	ROK	0.97
PF00589	Phage_integrase	0.97
PF00005	ABC_tran	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1314	Protein translocase subunit SecG	Intracellular trafficking, secretion, and vesicular transport [U]	1.94
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	85.44 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	82.52 %
Unclassified	root	N/A	1.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	81.55 %
Unclassified	root	N/A	1.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	81.55 %
Unclassified	root	N/A	1.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	72.82 %
Unclassified	root	N/A	1.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	56.31 %
Unclassified	root	N/A	1.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10208297	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	661	Open in IMG/M
3300002917\|JGI25616J43925_10301230	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	597	Open in IMG/M
3300003295\|Ga0006866J48919_119307	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	631	Open in IMG/M
3300004135\|Ga0058884_1335318	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	642	Open in IMG/M
3300004135\|Ga0058884_1363099	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	559	Open in IMG/M
3300004473\|Ga0068919_1253423	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	563	Open in IMG/M
3300004474\|Ga0068968_1463042	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	550	Open in IMG/M
3300004478\|Ga0068972_1279213	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	609	Open in IMG/M
3300004558\|Ga0068979_1151095	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	564	Open in IMG/M
3300004594\|Ga0068976_1127980	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	604	Open in IMG/M
3300004611\|Ga0068925_1215184	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	631	Open in IMG/M
3300004611\|Ga0068925_1260886	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	546	Open in IMG/M
3300004618\|Ga0068963_1279768	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	547	Open in IMG/M
3300004631\|Ga0058899_11527594	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	649	Open in IMG/M
3300004971\|Ga0072324_1154524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	576	Open in IMG/M
3300004977\|Ga0072329_1266397	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	607	Open in IMG/M
3300005468\|Ga0070707_100299584	All Organisms → cellular organisms → Bacteria → Acidobacteria	1562	Open in IMG/M
3300005542\|Ga0070732_10720975	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	607	Open in IMG/M
3300005586\|Ga0066691_10298730	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	950	Open in IMG/M
3300005602\|Ga0070762_10253993	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1094	Open in IMG/M
3300005650\|Ga0075038_10247052	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	601	Open in IMG/M
3300005921\|Ga0070766_10719137	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	677	Open in IMG/M
3300006176\|Ga0070765_101054379	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	768	Open in IMG/M
3300006755\|Ga0079222_10186288	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1230	Open in IMG/M
3300006800\|Ga0066660_11541349	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	524	Open in IMG/M
3300009672\|Ga0116215_1494142	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300010343\|Ga0074044_10981280	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300011076\|Ga0138574_1003264	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300011082\|Ga0138526_1133527	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300011120\|Ga0150983_12952903	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	683	Open in IMG/M
3300011271\|Ga0137393_11731142	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	514	Open in IMG/M
3300012683\|Ga0137398_10665149	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	723	Open in IMG/M
3300014495\|Ga0182015_10040717	All Organisms → cellular organisms → Bacteria → Acidobacteria	3477	Open in IMG/M
3300015241\|Ga0137418_11207258	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	532	Open in IMG/M
3300018018\|Ga0187886_1125983	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1039	Open in IMG/M
3300018057\|Ga0187858_10052057	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2939	Open in IMG/M
3300018086\|Ga0187769_10694760	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300019162\|Ga0184597_102082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	533	Open in IMG/M
3300019165\|Ga0184589_107844	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	636	Open in IMG/M
3300019177\|Ga0184592_105785	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	610	Open in IMG/M
3300019182\|Ga0184598_119861	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	604	Open in IMG/M
3300019183\|Ga0184601_112808	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	563	Open in IMG/M
3300019183\|Ga0184601_131222	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	510	Open in IMG/M
3300019240\|Ga0181510_1289483	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	556	Open in IMG/M
3300019278\|Ga0187800_1251737	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	599	Open in IMG/M
3300019278\|Ga0187800_1564007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	523	Open in IMG/M
3300019786\|Ga0182025_1163580	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1659	Open in IMG/M
3300020580\|Ga0210403_10431707	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1074	Open in IMG/M
3300021180\|Ga0210396_11769671	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	500	Open in IMG/M
3300021476\|Ga0187846_10025700	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2702	Open in IMG/M
3300022531\|Ga0242660_1035562	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1026	Open in IMG/M
3300022557\|Ga0212123_10937500	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	506	Open in IMG/M
3300022718\|Ga0242675_1024822	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	871	Open in IMG/M
3300022721\|Ga0242666_1166088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	548	Open in IMG/M
3300022722\|Ga0242657_1188336	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300022732\|Ga0224569_101293	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2110	Open in IMG/M
3300023542\|Ga0247540_103528	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	548	Open in IMG/M
3300024271\|Ga0224564_1131951	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300024295\|Ga0224556_1124346	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300025612\|Ga0208691_1012914	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2063	Open in IMG/M
3300025922\|Ga0207646_10391222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1256	Open in IMG/M
3300026551\|Ga0209648_10025330	All Organisms → cellular organisms → Bacteria	5184	Open in IMG/M
3300027537\|Ga0209419_1101951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	571	Open in IMG/M
3300027562\|Ga0209735_1022911	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1284	Open in IMG/M
3300027635\|Ga0209625_1067254	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	801	Open in IMG/M
3300027652\|Ga0209007_1028666	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1430	Open in IMG/M
3300027660\|Ga0209736_1019556	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2086	Open in IMG/M
3300027767\|Ga0209655_10122724	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	863	Open in IMG/M
3300027846\|Ga0209180_10466801	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	710	Open in IMG/M
3300027882\|Ga0209590_10271224	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1086	Open in IMG/M
3300028806\|Ga0302221_10541654	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	508	Open in IMG/M
3300028808\|Ga0302228_10161933	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1028	Open in IMG/M
3300028906\|Ga0308309_11428841	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	592	Open in IMG/M
3300029636\|Ga0222749_10667866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	569	Open in IMG/M
3300029701\|Ga0222748_1109968	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300029883\|Ga0311327_10642184	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300029943\|Ga0311340_10684038	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	882	Open in IMG/M
3300030549\|Ga0210257_10491775	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	559	Open in IMG/M
3300030605\|Ga0210265_1127156	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	561	Open in IMG/M
3300030629\|Ga0210268_1360157	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	507	Open in IMG/M
3300030737\|Ga0302310_10379251	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	778	Open in IMG/M
3300030740\|Ga0265460_11632254	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	651	Open in IMG/M
3300030740\|Ga0265460_12240752	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	575	Open in IMG/M
3300030740\|Ga0265460_12368011	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	562	Open in IMG/M
3300030741\|Ga0265459_13535612	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	548	Open in IMG/M
3300030763\|Ga0265763_1043483	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	548	Open in IMG/M
3300030805\|Ga0265756_112816	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	562	Open in IMG/M
3300030879\|Ga0265765_1070869	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	505	Open in IMG/M
3300030888\|Ga0265769_120281	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	524	Open in IMG/M
3300031022\|Ga0138301_1900772	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031044\|Ga0265747_110514	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	574	Open in IMG/M
3300031058\|Ga0308189_10303743	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	625	Open in IMG/M
3300031231\|Ga0170824_109615619	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300031524\|Ga0302320_10231829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2575	Open in IMG/M
3300031708\|Ga0310686_102134915	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	729	Open in IMG/M
3300031708\|Ga0310686_115989826	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	681	Open in IMG/M
3300031715\|Ga0307476_10168379	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1581	Open in IMG/M
3300031718\|Ga0307474_10548640	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	908	Open in IMG/M
3300031823\|Ga0307478_11503736	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	557	Open in IMG/M
3300031870\|Ga0316029_110258	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	523	Open in IMG/M
3300032027\|Ga0247536_104494	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	607	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.03%
Host-Associated	Host-Associated	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.20%
Aquatic	Environmental → Aquatic	5.83%
Plants	Host-Associated → Plants	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.47%
Peat	Environmental → Terrestrial → Peat	7.77%
Freshwater	Environmental → Aquatic → Freshwater	4.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.97%
Cave	Environmental → Terrestrial → Cave	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.14%
Loam	Environmental → Terrestrial → Soil → Loam	14.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.85%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.97%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.97%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.53%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	14.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.91%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.97%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.97%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.97%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.97%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.97%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.97%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300003295	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004135	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004473	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004474	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004478	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004558	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 76 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004594	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004611	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004618	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004971	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004977	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011076	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011082	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019162	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019165	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019177	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019182	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019183	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300023542	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030549	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR102SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030605	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE042SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030629	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030805	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030888	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031044	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031870	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI1 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032027	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_102082972	3300000567	Peatlands Soil	MENLIPLFVALTGAAVLLQAGILTALYLAMRKSSARMEALAEEVKTKAVPALETAQAILTELRPKLQ
JGI25616J43925_103012301	3300002917	Grasslands Soil	MENLTTIFIAVTAGAVILQACLLLAMYLAMRKTSTRLESLAEEVKTKALPTIDSAQALLADIRPKL
Ga0006866J48919_1193072	3300003295	Peatlands Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEAIADNLMAT
Ga0058884_13353181	3300004135	Forest Soil	MENLTMVFIAVTAAAVLLQAGILTALYLAMRKSSARMEAVALELKTKALPTLE
Ga0058884_13630991	3300004135	Forest Soil	MENLTPLFIALTGAAVALQAGLLAAMYLSMRKSSTRLEALANEVKTKALPTLETAQAILTELRPKL
Ga0068919_12534231	3300004473	Peatlands Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLE
Ga0068968_14630421	3300004474	Peatlands Soil	MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLETTREILAELRPKL
Ga0068972_12792131	3300004478	Peatlands Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEAIADNL
Ga0068979_11510951	3300004558	Peatlands Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLET
Ga0068976_11279802	3300004594	Peatlands Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEA
Ga0068925_12151842	3300004611	Peatlands Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEAIADNLMATSTIVRDEAQRIDAAVND
Ga0068925_12608861	3300004611	Peatlands Soil	MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPALETTREILAELRPKLTVIAD
Ga0068963_12797682	3300004618	Peatlands Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTL
Ga0058899_115275942	3300004631	Forest Soil	METLTPLFIALTGAAVVLQAGILAAMYLAVRKSSARMDALAVEVKTKALPTLETAQAVLIELRPRLQEIA
Ga0072324_11545241	3300004971	Peatlands Soil	MENLIPLFVALTGAAVLLQAGILTALYLAMRKSSARMEALAEEVKTKAVPALETAQAILTELR
Ga0072329_12663972	3300004977	Peatlands Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRPKVEAIADNLMATST
Ga0070707_1002995841	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MENLTPLFIALTGAAVLLQACLLAAMYLAMRKSSARMEAIATEVKGKAIPTLELAQSMLTEVRPK
Ga0070732_107209751	3300005542	Surface Soil	MENLTPLFIALTGIAVLLQAGVLVAIFVVLRTTSTKMEALATEVKTKVLPAIAQAEAMLTEIRPKVASIA
Ga0066691_102987303	3300005586	Soil	MENLTTWFIGITGLAVLLQAGVLLMMYLSMRKSSARMEAIATEVKTKAI
Ga0070762_102539933	3300005602	Soil	MENLTILFIAVTSAAVVLQAGILTALYVAVRRSTARMEALAVEVQAKALPALATSQAMLNELGPKLTVIA
Ga0075038_102470522	3300005650	Permafrost Soil	MDNLTPIFIALTGAAVVLQAGVLVAMYLSIRKTSASMEAMAAELRAKVLPTIDTVNAMV
Ga0070766_107191372	3300005921	Soil	MENLIPLFVALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKTKALPALETAQTLLKELTPKLHIIAENLTETTH
Ga0070765_1010543793	3300006176	Soil	MENLIPLFIALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKTKALPALETAQTLLKELTPKLHII
Ga0079222_101862881	3300006755	Agricultural Soil	METYLPAFVGVTAGAVLLQALILVALYLSVRKTTSRLEALAEEVKTKALPT
Ga0066660_115413492	3300006800	Soil	MENLTTWFIGITGLAVLLQAGVLLMMYLSMRKSSARMEAIATEVKTKAIPALESTQTNLTEIRPKL
Ga0116215_14941421	3300009672	Peatlands Soil	MENLIPLFVALTGAAVLLQAGILTALYLAMRKSSARMEALAEEVKTKAVPALETAQAILTELRPKLQT
Ga0074044_109812801	3300010343	Bog Forest Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMESLAEEVKTKALPTLETAQSMLAEIRPKVEVIADN
Ga0138574_10032642	3300011076	Peatlands Soil	MENLIPLFVALTGAAVVLQAGLLAAMYLAMRKTSTRMETLADEVKTKALPTLETTQSMLAEIRP
Ga0138526_11335272	3300011082	Peatlands Soil	MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLETAQAML
Ga0150983_129529032	3300011120	Forest Soil	MENLIPLFIALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKSKALPALETAQTLLKELTPKLHIIAENLTETTHSVRAQVERVDATVSDAVDRP
Ga0137393_117311422	3300011271	Vadose Zone Soil	MLMENLTPLFIALTGAAVLLQACLLAAMYLAMRKTSARMEAIATEVKGKAIPALELAQ
Ga0137398_106651492	3300012683	Vadose Zone Soil	MDNLTTIFIAVTAVAVILQAGLLLGMYLAMRKTSTRLESLAEEVKTKALPAIDSAQTLIADIRPKLQIIADNLAE
Ga0182015_100407175	3300014495	Palsa	MENLTPLFIALTGAAVLLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLETAQAVLAELRPQLIVIADDRTETTHSVRSQVERMDA
Ga0137418_112072582	3300015241	Vadose Zone Soil	MLMENLTPLFIAMTGAAVLLQACLLAAIYLAMRKSTARLEALATEVKSKAIPALESAQSILTEIRPKIRVVADNVQETTSMLRAEIERVDATINDV
Ga0187886_11259833	3300018018	Peatland	MENLIPLFVALTGAAVLLQAGVLVALYLAVRKTSARLEAVSEEVKAKALPALDTAHSMLT
Ga0187858_100520575	3300018057	Peatland	MENLIPLFVALTGAAVLLQAGVLVALYLAVRKTSARLEAVSEEVKAKALPALD
Ga0187769_106947601	3300018086	Tropical Peatland	MENLTPLFIALTGAAVLLQALLLAAIYLAMRKSSARMEGLAMEVKTKALPMLET
Ga0184597_1020822	3300019162	Soil	MENLTPLFIALTGAAVVLQAGVLVAMYRVMRKSSARMEALAVEVKTRALPTIETAQAIL
Ga0184589_1078442	3300019165	Soil	MENLTPLFIALTGAAVVLQAGILAALYVAMRKSSARMEALAIEVKTKALPTLETAQAMLAELRPQLMIIADNLTETTHSVRSQVERMDATVND
Ga0184592_1057851	3300019177	Soil	MENLTPLFIALTGAAVVLQAGILAALYVAMRKSSARMEALAIEVKTKALPTLETAQAMLAELRPQLMIIADNLTETTHSVRS
Ga0184598_1198612	3300019182	Soil	MENLTPLFIALTGAAVVLQAGILAALYVAMRKSSARMEALAIEVKTKALPTLETAQAMLAELRPQLMIIADNLTETTHSV
Ga0184601_1128081	3300019183	Soil	MENLTPLFIALTGAAVVLQAGILAALYVAMRKSSARMEALAIEVKTKALPTLETAQAMLAELRPQLMIIA
Ga0184601_1312221	3300019183	Soil	MENLTPLFIALTGAAVVLQACVLVAMYLAIRKSSARMEALALEVKTKALPTIETAQAILT
Ga0181510_12894832	3300019240	Peatland	MENLIPLFIALTGAAVVLQAGILAALYLSVRKTSARMEALAVEVKAKALPALDMSQALL
Ga0187800_12517372	3300019278	Peatland	MENLTPLFIALTGAAVVLQAGLLAAMYLAMRKTSSRMEALAEEVKTKALPALETTQSMLAEIRP
Ga0187800_15432292	3300019278	Peatland	MESLTPLFIALTGAAVLLQACLLAAMYLAMRKSSARMEALATEVKSKALP
Ga0187800_15640071	3300019278	Peatland	MENLTPLFIALTGAAVLLQALLLAAIYLAMRKSSARMEGLAMEVKTKALPMLETAQAMLAELRPRLQ
Ga0182025_11635801	3300019786	Permafrost	MENLLPLFVALTGAAVMLQAGLLAAMYLAMRKTTTKMEALAEEVKTKALPTI
Ga0210403_104317071	3300020580	Soil	MENQAPLLIVFIALTGAAVLLQAGILAAMYLAMRKSSARMEELAAEVKTKALP
Ga0210396_117696712	3300021180	Soil	MENLTMVFIAVTAAAVVLQAFILAFMYLAMRKSTARMEAVALEVKTKALPTLETAQALLTEM
Ga0187846_100257006	3300021476	Biofilm	MENITIFIAVTSGAVVLQALILAAMYLAMRKSSARMEALATEVKTKALPTIESANALLNDLRPKL
Ga0242660_10355623	3300022531	Soil	MENLTTVFIAITGAAVILQAGLLAAMYLAMRKTSTRLESLAEEVKTKVLPTV
Ga0212123_109375002	3300022557	Iron-Sulfur Acid Spring	MENLTPVFIALTGIAVLLQAGVLVAIFVALKKTSTKMEALAEEVKTKVLPTIVQAEAMLA
Ga0242675_10248222	3300022718	Soil	MENLNVFVSLTGIAVLLQAGILAALYLAMRKSSASMEALAVEVKTKALPTLETVQEIQPSSVPS
Ga0242666_11660881	3300022721	Soil	MENLLPIFVALTGAAVLLQAGLLAAMYLAMRKTTTKMEALAEEVKTRALP
Ga0242657_11883362	3300022722	Soil	MENLIPLFIALTGAAVVLQACVLLALYLSVRKTSARMEGLAIEVKAKALPALRSAQSILVDLRP
Ga0224569_1012935	3300022732	Rhizosphere	MENLTPLFIALTGAAVVLQACVLVAMYLAIRKSSARMEALALEVKTKALPTIETAQAILTEL
Ga0247540_1035281	3300023542	Soil	MENLTPLFIALTGAAVVLQAGVLVAMYRVMRKSSARMEALAVEVKTRALPTIETAQ
Ga0224564_11319511	3300024271	Soil	MENLIPLFVALTGAAVLLQAGVLVALYLAVRKTGARLEAVSEEVKAKAL
Ga0224556_11243461	3300024295	Soil	MENLIPLFIALTGAAVLLQAGMLVALYLSVRKSSVRMEALAVEVKTKALPAIET
Ga0208691_10129141	3300025612	Peatland	MENLLPLFIALTGAAVVLQALILLAMYLAVRKSTARMEAIAEEVKTKAFPTIDTTQALL
Ga0207646_103912224	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MENLTPLFIALTGAAVLLQACLLAAMYLAMRKSSARMEAIATEVKGKAIPTLEL
Ga0209648_100253307	3300026551	Grasslands Soil	MENLTPLFIALTGAAVLLQAGLLAAMYLAMRKSSARMEAIATEVKGKAIPTLELAQSMLTEVRP
Ga0209419_11019511	3300027537	Forest Soil	MENLTTIFIAITGAAVLLQAGLLAAMYLTMRKTSARLESLAEEVKTRVLPTVDSAQSLLNDI
Ga0209735_10229111	3300027562	Forest Soil	MDNLTTIFIAITGAAVILQAGLLAAMYLAMRKTSSRLESLAEEVKTKALPAIDSTQALLTEIRPKLQGIA
Ga0209625_10672542	3300027635	Forest Soil	MENLTPLFIALTGVAVLLQAGLLAAMYLTMRKTSARLEALSDEVKTKALPTIETAQAMLTELRPTLEVIVRNVEETTSTIR
Ga0209007_10286661	3300027652	Forest Soil	MENLIPLFVALTAIAVLLQAGVLVALYLAVRKTGARLEAVSEEVKTKALPTFDTAHSLLT
Ga0209736_10195561	3300027660	Forest Soil	MENLTTIFIAITGAAVLLQAGLLAAMYLTMRKTSARLESLAGEVKSKVIPTIDSAQTLLTEI
Ga0209655_101227242	3300027767	Bog Forest Soil	MENLIPLFIALTGAAVLLQAGILTALYLGVRKTSARMEALAEEVKTKAVPALETAQAMLTELRPRLQVVADNLMETTIA
Ga0209180_104668013	3300027846	Vadose Zone Soil	MDNLTTIFIAVTAGAVVLQACLLLAMYLAMRKTSTRLESLAEEVKTKALPTIDSAQAL
Ga0209590_102712243	3300027882	Vadose Zone Soil	MDNLTTIFIAVTAGAVILQACLLLAMYLAMRKTSTRLESLAEEVKTKALPTIDSAQAL
Ga0302221_105416541	3300028806	Palsa	MENLTPLFIALTGAAVALQAGVLVAIYLSMRKTSARMEALAVEVKTKAVPTLETAQA
Ga0302228_101619333	3300028808	Palsa	MENLTMVFIAVTSAAVVLQAFVLVFMYLAMRKTSARMEAIAEEVKGKAVPALDLAQ
Ga0308309_114288412	3300028906	Soil	MENLIPLFIALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKTKALPALETAQTLLKELTPKLHIIAENLTE
Ga0222749_106678662	3300029636	Soil	MRVIFMENLIPLFIALTGAAVVLQACLLAAMYLAMRKSSARMEAIATEVKNKAIPTLEQAQLLLSEVRPRLQ
Ga0222748_11099681	3300029701	Soil	MENLIPLFIALTGIAVLMQAVVLLCLYLGVRKSSARMEALADEVKSKALPALET
Ga0311327_106421841	3300029883	Bog	MENLIPLFIALTGAAVLLQAGMLVALYLSVRKSSVRMEALAVEVKTKALPAI
Ga0311340_106840381	3300029943	Palsa	MDNLTPIFIALTGAAVLLQAGLLAAMYLSLRKSSSRIETLATEVKTKVLPTVETAQAM
Ga0302281_101382093	3300030044	Fen	MENLTMVFIAVTSAAVVLQAFVLVFMYLAMRKTSARMEAIAEEVKGKA
Ga0210257_104917752	3300030549	Soil	MENLITIFIAVTGAAVLLQACLLAAMYLAMRKSSARIESLASDVAGKALPAL
Ga0210265_11271562	3300030605	Soil	MENLTPLFIALTGAAVVLQAGLLAAMYLAMRKTSTRMEALAEEVKSKALPTLEATQSLLAEI
Ga0210268_13601571	3300030629	Soil	MENLLPLFVGLTAIAVALQAGILVALYISVRKTSAKVEVLAEEVKTKALPALETAHSV
Ga0302310_103792511	3300030737	Palsa	MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSSRMEALAIEVKTKALPTLETAQSILTELRPKLQII
Ga0265460_116322541	3300030740	Soil	MENLTPLFIALTGAAVVLQAGLLAAMYLAMRKTSTRMEALAEEVKSKALPTLEAKKKKKGRVKVKG
Ga0265460_122407522	3300030740	Soil	MENLIPLFVALTGIAVLLQAGVLVALYFAVRKTSSRLEAVSEEVKTKALPTIDAA
Ga0265460_123680111	3300030740	Soil	MENLLPLFVGLTAIAVALQAGILVALYISVRKTSAKVEVLAEEVKTKALPALETAHSVLTEL
Ga0265459_135356121	3300030741	Soil	MENLTPLFIALTGAAVLLQAGLLAAMYLSMRKSSARLEALANEVKTKALPALETRKLKKMVVNGRSR
Ga0265763_10434831	3300030763	Soil	MVFIAVTAAAVLLQAGILAALYLAMRKSSDRMEALAVEVKTKALPALETAQAILTE
Ga0265756_1128161	3300030805	Soil	MENLLPIFVALTGAAVLLQAGLLAAMYLAMRKTTTKMEALAEEVKTKALPTID
Ga0265765_10708691	3300030879	Soil	MENLTTWFIAVTAAAVLLQAGLLAAMYLAMRKSSARMEALAVEVKTKALPTLETAQAI
Ga0265769_1202811	3300030888	Soil	MENLTTWFIAVTAAAVLLQAGLLAAMYLAMRKSSARMEALAVEVKTKALPTL
Ga0138301_19007721	3300031022	Soil	MENLIPLFIALTGIAVLIQAVVLLCLYIGVRKSSARMEALADEVKSKALPALEKKGAIGK
Ga0265747_1105141	3300031044	Soil	MENLIPLFVALTAIAVLLQAGVLVALYFAVRKASSRLEAVSEEVKTKALPTIDAAQSL
Ga0308189_103037431	3300031058	Soil	MENLLPVFIALTGVAVLLQASLLGAMYLAIRKSSARMEAIATEVKDKTLPVLDSTESILAEIRPKLQVIAQNLEDTTRIVR
Ga0170824_1096156192	3300031231	Forest Soil	MENLIPLFIALTGIAILLQAVVLLLLYLAVRKSSAHMEAVADEVKTKALPALEAAQTLLKELN
Ga0302320_102318291	3300031524	Bog	MENLLPIFVALTGIAVLLQAGLLLGMYLTMRKTGARLEELATEVKTKALPAIESTKST
Ga0310686_1021349152	3300031708	Soil	MENLTPLFIALTGAAVVLQAGILAALYLAMRKSSARMEALAVEVKTKALPTLEAVQGMLTELRPKLT
Ga0310686_1159898261	3300031708	Soil	MENLTPLFIALTGAAVLVQAGLLAGMYLSMRKSSARLEALAEEVKTKVLPTVET
Ga0307476_101683795	3300031715	Hardwood Forest Soil	MENLTTVFIAITGAAVILQAGLLAAMYLAMRKTSTRLESLAEEVKTKVLPTVDSAQ
Ga0307474_105486401	3300031718	Hardwood Forest Soil	MMENLTPLFIALTGAAVVLQAGLLAAMYLAMRKSSTRMEKLAEEVKNKALPALDSAQLLLTEIRPKLQVISD
Ga0307478_115037362	3300031823	Hardwood Forest Soil	MENLNIFVALTGIAVLLQAGILAALYLAMRKSSASMEALAVEVKTKALPTLETVQEILTELR
Ga0316029_1102582	3300031870	Soil	MENLIPLFVALTGAAVVLQAGLLTALYLAVRKSSARMEALAIEVKTKALPTLETT
Ga0247536_1044942	3300032027	Soil	MENLTPLFIALTGAAVVLQAGVLVAMYRVMRKSSARMEALAVEVKTRALPTIETAQAILTELRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099574

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences