Metagenome / Metatranscriptome Family F099563

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099563
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	77 residues
Representative Sequence	MFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFAERLEFLSAVEERNKEARLIIKDAD
Number of Associated Samples	75
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	71.84 %
% of genes near scaffold ends (potentially truncated)	30.10 %
% of genes from short scaffolds (< 2000 bps)	96.12 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.194 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.864 % of family members)
Environment Ontology (ENVO)	Unclassified (27.184 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.786 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.46% β-sheet: 0.00% Coil/Unstructured: 36.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00484	Pro_CA	2.91
PF09361	Phasin_2	1.94
PF00011	HSP20	1.94
PF01145	Band_7	1.94
PF03734	YkuD	1.94
PF00106	adh_short	0.97
PF04226	Transgly_assoc	0.97
PF06577	EipA	0.97
PF06186	DUF992	0.97
PF13592	HTH_33	0.97
PF01527	HTH_Tnp_1	0.97
PF11604	CusF_Ec	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	2.91
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.94
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.94
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
All Organisms	root	All Organisms	39.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
cellular organisms	root	All Organisms → cellular organisms	39.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.39 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.39 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.62 %
Leptospirales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.94 %
Leptospiraceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.91 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.97 %
Leptospira	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.94 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.97 %
Leptospira mtsangambouensis	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira mtsangambouensis	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.19 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	1.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.94 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.97 %
Leptospira mtsangambouensis	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira mtsangambouensis	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459017\|G14TP7Y01EAXJO	Not Available	537	Open in IMG/M
3300003505\|JGIcombinedJ51221_10020503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2312	Open in IMG/M
3300005169\|Ga0066810_10030602	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300005436\|Ga0070713_100133426	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300006052\|Ga0075029_100587698	Not Available	743	Open in IMG/M
3300006052\|Ga0075029_101024054	Not Available	571	Open in IMG/M
3300006057\|Ga0075026_100136056	Not Available	1250	Open in IMG/M
3300006057\|Ga0075026_100440401	Not Available	740	Open in IMG/M
3300006059\|Ga0075017_100661583	Not Available	802	Open in IMG/M
3300006176\|Ga0070765_101746001	Not Available	584	Open in IMG/M
3300006354\|Ga0075021_11115442	Not Available	517	Open in IMG/M
3300006953\|Ga0074063_14193065	Not Available	1177	Open in IMG/M
3300009177\|Ga0105248_12612605	Not Available	576	Open in IMG/M
3300009521\|Ga0116222_1487348	Not Available	539	Open in IMG/M
3300010048\|Ga0126373_11514559	Not Available	736	Open in IMG/M
3300010373\|Ga0134128_10974683	Not Available	938	Open in IMG/M
3300012957\|Ga0164303_10231890	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300012958\|Ga0164299_10719187	Not Available	701	Open in IMG/M
3300012960\|Ga0164301_11587105	Not Available	542	Open in IMG/M
3300012961\|Ga0164302_11013196	Not Available	648	Open in IMG/M
3300012961\|Ga0164302_11902065	Not Available	506	Open in IMG/M
3300012984\|Ga0164309_11972221	Not Available	500	Open in IMG/M
3300015371\|Ga0132258_11078936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2030	Open in IMG/M
3300016270\|Ga0182036_10575672	Not Available	900	Open in IMG/M
3300016270\|Ga0182036_11274863	Not Available	613	Open in IMG/M
3300016319\|Ga0182033_11290778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300016341\|Ga0182035_11463464	Not Available	614	Open in IMG/M
3300016387\|Ga0182040_11319378	Not Available	609	Open in IMG/M
3300016422\|Ga0182039_10517014	Not Available	1033	Open in IMG/M
3300016422\|Ga0182039_10741012	Not Available	869	Open in IMG/M
3300016445\|Ga0182038_11174399	Not Available	684	Open in IMG/M
3300017933\|Ga0187801_10274234	Not Available	682	Open in IMG/M
3300017955\|Ga0187817_11103712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	509	Open in IMG/M
3300017994\|Ga0187822_10256681	Not Available	603	Open in IMG/M
3300020579\|Ga0210407_10134468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1898	Open in IMG/M
3300020579\|Ga0210407_10765560	Not Available	746	Open in IMG/M
3300020579\|Ga0210407_11335822	Not Available	534	Open in IMG/M
3300020581\|Ga0210399_10386138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1168	Open in IMG/M
3300020581\|Ga0210399_10492323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1019	Open in IMG/M
3300020581\|Ga0210399_10783820	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300020582\|Ga0210395_10122779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1930	Open in IMG/M
3300020582\|Ga0210395_10381247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1061	Open in IMG/M
3300020583\|Ga0210401_11278141	Not Available	592	Open in IMG/M
3300021088\|Ga0210404_10283544	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira mtsangambouensis	908	Open in IMG/M
3300021168\|Ga0210406_10902976	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300021168\|Ga0210406_11176985	Not Available	559	Open in IMG/M
3300021171\|Ga0210405_10710658	Not Available	776	Open in IMG/M
3300021178\|Ga0210408_10220183	Not Available	1510	Open in IMG/M
3300021178\|Ga0210408_10883292	Not Available	696	Open in IMG/M
3300021178\|Ga0210408_11511940	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300021181\|Ga0210388_10580175	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300021181\|Ga0210388_10670071	Not Available	905	Open in IMG/M
3300021403\|Ga0210397_10161920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1572	Open in IMG/M
3300021403\|Ga0210397_11024754	Not Available	641	Open in IMG/M
3300021404\|Ga0210389_11310694	Not Available	555	Open in IMG/M
3300021405\|Ga0210387_11454610	Not Available	588	Open in IMG/M
3300021407\|Ga0210383_11474391	Not Available	564	Open in IMG/M
3300021478\|Ga0210402_10894041	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300021478\|Ga0210402_11560174	Not Available	587	Open in IMG/M
3300021559\|Ga0210409_10479900	Not Available	1106	Open in IMG/M
3300022504\|Ga0242642_1060340	Not Available	607	Open in IMG/M
3300022504\|Ga0242642_1070000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	576	Open in IMG/M
3300022533\|Ga0242662_10138329	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300022712\|Ga0242653_1015767	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300022715\|Ga0242678_1050630	Not Available	600	Open in IMG/M
3300022718\|Ga0242675_1079812	Not Available	599	Open in IMG/M
3300022726\|Ga0242654_10061177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1095	Open in IMG/M
3300022726\|Ga0242654_10330101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300024225\|Ga0224572_1027272	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300024227\|Ga0228598_1009404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1961	Open in IMG/M
3300024227\|Ga0228598_1030316	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300025916\|Ga0207663_11269133	Not Available	593	Open in IMG/M
3300027109\|Ga0208603_1029875	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300027161\|Ga0208368_106598	Not Available	628	Open in IMG/M
3300029636\|Ga0222749_10729433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	542	Open in IMG/M
3300030494\|Ga0310037_10245050	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300030862\|Ga0265753_1149409	Not Available	504	Open in IMG/M
3300030916\|Ga0075386_12039533	Not Available	518	Open in IMG/M
3300030974\|Ga0075371_11343146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1379	Open in IMG/M
3300031128\|Ga0170823_17014020	Not Available	844	Open in IMG/M
3300031231\|Ga0170824_111824062	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300031231\|Ga0170824_124689115	Not Available	629	Open in IMG/M
3300031469\|Ga0170819_11146915	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300031708\|Ga0310686_108638645	All Organisms → cellular organisms → Bacteria	2282	Open in IMG/M
3300031720\|Ga0307469_10228268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1479	Open in IMG/M
3300031740\|Ga0307468_101668624	Not Available	598	Open in IMG/M
3300031744\|Ga0306918_10397549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1073	Open in IMG/M
3300031890\|Ga0306925_11579893	Not Available	639	Open in IMG/M
3300031890\|Ga0306925_12005597	Not Available	546	Open in IMG/M
3300031910\|Ga0306923_10645628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1184	Open in IMG/M
3300031910\|Ga0306923_11922292	Not Available	603	Open in IMG/M
3300031941\|Ga0310912_10416951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1046	Open in IMG/M
3300031947\|Ga0310909_11545056	Not Available	527	Open in IMG/M
3300031954\|Ga0306926_11358678	Not Available	826	Open in IMG/M
3300031954\|Ga0306926_11705162	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300031954\|Ga0306926_12784691	Not Available	529	Open in IMG/M
3300032180\|Ga0307471_104059038	Not Available	517	Open in IMG/M
3300032205\|Ga0307472_100303985	Not Available	1284	Open in IMG/M
3300032205\|Ga0307472_101186356	Not Available	728	Open in IMG/M
3300032261\|Ga0306920_101184275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1105	Open in IMG/M
3300032261\|Ga0306920_101260872	Not Available	1065	Open in IMG/M
3300032261\|Ga0306920_102222768	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300032261\|Ga0306920_103784413	Not Available	554	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.17%
Host-Associated	Host-Associated	4.85%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.44%
Aquatic	Environmental → Aquatic	8.74%
Plants	Host-Associated → Plants	4.85%
Solid Waste	Engineered → Solid Waste	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.44%
Sediment	Environmental → Aquatic → Sediment	5.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.88%
Freshwater	Environmental → Aquatic → Freshwater	2.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.97%
Grass	Engineered → Solid Waste → Grass	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.83%
Loam	Environmental → Terrestrial → Soil → Loam	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027161	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030974	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_02059530	2170459017	Switchgrass, Maize And Mischanthus Litter	MLLSTNKDERECRLHAEHCEDKARLQSDPQLRQTFLEMHQRWLSLARSYEFLQRLELLSTVEARSQMCAR
JGIcombinedJ51221_100205031	3300003505	Forest Soil	MFVKLSEQARECRLYADHCAAKAGLQTDPKLRQVYLHMQQRXLSLARSYEFSERLEFLSAIEERNXEARLILVCQESE*
Ga0066810_100306021	3300005169	Soil	MFVKLSEQARECRLYADHCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAREERNNEARLILVCQESE*
Ga0070713_1001334264	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFLKPSKEARECHLYAAHCADTARLQSDPQLRQDFLEMQQRWLSLARSYEFAERLEFLSAIEARNKEARLIIEDAA*
Ga0075029_1005876982	3300006052	Watersheds	MFVTLSSEARECRLYAEHCADRARLQSDPQLRKDYLEMQRRWLALARSYEFAEQLEFLSAVEARIEVLCAKRIAFPCTKRP*
Ga0075029_1010240541	3300006052	Watersheds	MFVSVSREASECRLYAEHCADKARLQSDPQLGQCFLEMQQRWLSLARSYEFAERLEFLSAVEEWNKEARLLVKDAD*
Ga0075026_1001360561	3300006057	Watersheds	MFVKLSEQARECRLYADHCAAKAGLQTEPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKEARLIL
Ga0075026_1004404012	3300006057	Watersheds	MFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFAERLEFLSAVEERNKEARLIIKDAD*
Ga0075017_1006615832	3300006059	Watersheds	MFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQRRWLSPASSYEFAERLEFLSAVEERNKEARLIIKDAD*
Ga0070765_1017460011	3300006176	Soil	MFVKLSEQARECRLYADHCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNEEARLILVCQESE*
Ga0075021_111154422	3300006354	Watersheds	MFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQRRWLSLAGSYEFAERLEFLSALEERNKENAWRRLA*
Ga0074063_141930653	3300006953	Soil	MLVISEQARECRLYADHCAAKAGLQTEPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNNEARLILVCQESE*
Ga0105248_126126052	3300009177	Switchgrass Rhizosphere	MFLTTNKDARECCLHAEHCEDKARLQSDPQLRQTFLEMHQRWLSLARSYEFLQRLELLSTVEARSQMCAR*
Ga0116222_14873481	3300009521	Peatlands Soil	MFVKLSEQARECRLYADLCAAKAGLQTEPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKEARLILVCQESE*
Ga0126373_115145592	3300010048	Tropical Forest Soil	MFLVINKDARECRLHAEHCEDKARLQSDPQLRQDFLGMQQRWLSLARSYEFLQRLELLSAVEEKVKDVRLIVKHAA*
Ga0134128_109746831	3300010373	Terrestrial Soil	MLLSTNKDERECRLHAEHCEDKARLQSDPQLRQTFLEMHQRWLSLARSYEFLQRLELLSTVEARSQMCAR*
Ga0164303_102318902	3300012957	Soil	MFITPNKEARECRLHAEHCEDKARLQSDPQFRQDFLEMQQRWLSLARSYEFLERPELLSAVEAKIIRRAPVNQGRGLAEN*
Ga0164299_107191871	3300012958	Soil	MFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFTERLEFLSAVEERNKEARLIIKDAD*
Ga0164301_115871051	3300012960	Soil	MGAMFLIPNKEARECRLHAEHCEDKARLQSDPQLRQDFLEMQQRWLSLARSYEFLERLELLSAVEAKIIRRAPVNQGRGLAEN*
Ga0164302_110131961	3300012961	Soil	MFVKLSEQARECRLYADHCAAKAGLQTEPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKEARLILVCQESE*
Ga0164302_119020651	3300012961	Soil	MGAMFLTPNKEARECRLHAEHCEDKARFQSDPQFRQDFLEMQQRWLSLARSYEFLERPELLSAVEAKIIRRAPDNQGRGLAEN*
Ga0164309_119722211	3300012984	Soil	LHAEHCEDKARLQSDPQFRQDFLEMQQRWLSLARSYEFLERLELLSAVEAKIVRRAPDNQGRGLAEN*
Ga0132258_110789363	3300015371	Arabidopsis Rhizosphere	MHNKEARECRLHAEHCEDKAQRQSDPQNRDDFIEMRQRWLSLAHNYEFLERLELLSAVEANINDARLIVKDAA*
Ga0182036_105756723	3300016270	Soil	MSVNFSSEAGECRLYAEHCADRARLQSDPQLRRDFLEMQRRWLALARSYEFAERLEFLSAVETRNKETRLIIEDAAAPWQLNQAGMSERHAFRLRSGEPV
Ga0182036_112748631	3300016270	Soil	MFVKLGEQAHECRLYADHCAAKAELQTDPKLGQVYLNMQQRWSSLARSHEFSEQLEFLSAAEERNKETRLMLVGQEPE
Ga0182033_112907781	3300016319	Soil	VSGAGRAPLSVNFSSEAGECRLYAEHCADRARFQSDPQLHQDFLEMRRRWLALARSYEFAERLEFLSAVEIRNKETRLIIEDAAAF
Ga0182035_114634641	3300016341	Soil	MFLVINKDARECRLHAEHCEDKARLQSDPQLRQDFLGMQQRWLSLARSYEFLQRLELLSAVEAKIKDVRLIVKDAA
Ga0182040_113193781	3300016387	Soil	VSVNFSSEAGECRLYAEHCADRARLLSDPQLRQDFLEMQRRWLALACSYEFAERLEFLSSVDTRNKQTRSIIEDAA
Ga0182039_105170142	3300016422	Soil	MFSSVSREARECRLYAGQCANKARLQFNPKLRQEFLDMQRRWLSLARCYEFSERLEFLSATETRNNEGVPHIPDCMTFPS
Ga0182039_107410122	3300016422	Soil	MSVRFSIEAAECRRYAEHCADRARLQSDPQLRQDFLEMQRRWLALARSYEFAERLEFLSAVETRNKETRLIIEDAAAPWQLIKPGCRNGMLSD
Ga0182038_111743992	3300016445	Soil	MFSSVSREARECRLHAEQCANKARLQFNPKLRQEFLDMQRRWLSLARCYEFSERLEFLSATETRNNEGVPHIPNCMFPS
Ga0187801_102742342	3300017933	Freshwater Sediment	MFVKLSEQARECRLYADHCAAEAGLQADPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKE
Ga0187817_111037121	3300017955	Freshwater Sediment	GEGAMFVEFSREARECRLYAEHCADKARFQSDPQLRQDFIEMQRRWLSLARNYEFSERLEFLSAVETRKKETRQIIEDAGPDRI
Ga0187822_102566812	3300017994	Freshwater Sediment	MIVVTNKEARECRLHALHCEDKARLQSDPQLRQDFLGMQQRWLSLAQSYEFLERLELLSAVEAKIKDVRLIIKDAA
Ga0210407_101344682	3300020579	Soil	MFVGVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQRRWLSLACSCEFAERLEFLSAVEERNKEARVKDAEVGR
Ga0210407_107655602	3300020579	Soil	MLVKLGEQAHECRLYADYCAAKAELQTDPKLRQSYLGMQHLKTDPKLRQVYLHMQHRWLSLARSYEFSEQLEVLSVAEERNKETRLMLVGQEPE
Ga0210407_113358222	3300020579	Soil	MSVSVSKEAGECRLYAEYCADKARLQSDPQLRQCFLEMQRRWLGLARSYEFAERLEFASTVEERNKEARLIITDA
Ga0210399_103861382	3300020581	Soil	MFVDVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQRRWLSLACSCEFAERLEFLSAVEERNKEARIKDAEVGR
Ga0210399_104923233	3300020581	Soil	LIPNKEARECRLHAEHCEDKARLQSDPQFRQDFLEMQQRWLSLARSYEFLERPELLSAVEAKIIRRAPDNQGRGLAEN
Ga0210399_107838201	3300020581	Soil	RLYADHCAAKAGLQTEPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKEARLILVWQESE
Ga0210395_101227792	3300020582	Soil	GAMFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFAERLEFLSAVEERNKEARLIIEDAD
Ga0210395_103812472	3300020582	Soil	MSVSFSIEAGECRRYAEHCADGARLQSDPQLRQDFLEMQRRWLALARSYEFAERLEFLSSVDTRNKQARSIIEDAAAN
Ga0210401_112781412	3300020583	Soil	MFLISNKEARECRLHAEHCEDKARLQSDPQFRQDFLEMQQRWLSLARSYEFLERLELLSAVEAKI
Ga0210404_102835442	3300021088	Soil	MFLTPNKEARECRLHAEHCEDKARLQSDPQLRQGFLEMQQRWLSLARSYEFLERLELLSAVEAKIKDVRLIIKDAA
Ga0210406_109029762	3300021168	Soil	QARECRLCADHCAAEAGLQADPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKEARLILVCQESE
Ga0210406_111769851	3300021168	Soil	MFLISNKEARECRLHAEHCEDKARLQSDPQFRQDFLEMQQRWLSLARSYEFLERPELLSAVEAKIIRRAPDNQGRGLAEN
Ga0210405_107106583	3300021171	Soil	GAMFVTLSSEARECRLYAEHCADRARLQSDPQLRKDYLEMQRRWLALASSYEFAEELEFLSAVEARNKETRRIFEDAVA
Ga0210408_102201832	3300021178	Soil	MFVKLSEQARECRLYADHCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNNEARLILVCQESE
Ga0210408_108832922	3300021178	Soil	VSGAGEGAMSVSFSIEAGECRRYAEHCADRARLQSDPQLRQDFLEMQRRWLALARSYEFAERLEFLSSVDTRNKQARSIIEDAAAN
Ga0210408_115119401	3300021178	Soil	SKRENRNANWDVGALGRGAMFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFAERLEFLSAVEERNKEARLIIKDAD
Ga0210388_105801752	3300021181	Soil	MFVKLSEQARECRLYADHCAAEAGLQADPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNNEARLILVCQESE
Ga0210388_106700711	3300021181	Soil	MFLTPNKEARECRLHAEHCEDKARLQSDPRFRQDFLEMQQRWLSLARSYEFLERLELLSAVEAKIKDVRLIIKDAA
Ga0210397_101619202	3300021403	Soil	MSGRWEGAMFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQRRWLGLARSYEFAERLEFLSAVEERNKEARLIIEDAD
Ga0210397_110247541	3300021403	Soil	WVKEIRILLVSGAGEGAMSVSFSIEAGECRRYAEHCADRARLQSDPQLRQDFLEMQRRWLALARSYEFAERLEFLSSVDTRNKQPSSIIEDAAAN
Ga0210389_113106941	3300021404	Soil	ADHCAAEAGLQADPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNEEARLILVCQESE
Ga0210387_114546102	3300021405	Soil	MFVKLSEQARECRLYADHCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNNEARL
Ga0210383_114743911	3300021407	Soil	MFLTPNKDARECRLHAEHCEDKARLQSDPQFRQGFLEMQQRWLSLARSYEFLERLELLSAVEAKIKDVRLIIKDAA
Ga0210402_108940412	3300021478	Soil	APMLVISEQARECRLYADHCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNNEARLILVCQESE
Ga0210402_115601742	3300021478	Soil	MFVDVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQRRWLSLACSYEFAERLEFLSAVEERNKEARIKDAE
Ga0210409_104799003	3300021559	Soil	MFVTLSSEARECRLYAEHCADRAQLQSDPQLRKDYLEMQRRWLALASSYEFAEELEFLSAVEARNKETRRIFEDAVA
Ga0242642_10603402	3300022504	Soil	GAMFLTPNKQARECRLHAEHCEDKARLQSDPQLRQGFLEMQQRWLSLARSYEFLERLELLSAVEAKIKDVRLIIKDAA
Ga0242642_10700001	3300022504	Soil	RGAMFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFAERLEFLSAVEERNKEARLIIKDAD
Ga0242662_101383292	3300022533	Soil	MESARVCKLSEQARECRLYADHCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNNEARLILVCQESE
Ga0242653_10157671	3300022712	Soil	MFVKLSEQARECRLYADYCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKEARLMLVCQESE
Ga0242678_10506301	3300022715	Soil	GPLGGAAMFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFAERLEFLSAVEERNKEARLIIKDAD
Ga0242675_10798121	3300022718	Soil	SVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFAERLEFLSAVEERNKEARLIIKDAD
Ga0242654_100611772	3300022726	Soil	MFLTPNKEARECRLHAEHCEDKARLQSDPQLRQDLLEMQQRWLSLARSYEFLERLELLSAVEAKIKDVRLIIKDAA
Ga0242654_103301012	3300022726	Soil	GEGAMFVTLSSEARECRLYAEHCADRPRLQSDPQLRKDYLEMQRRWLALARSYEFAEELEFLSAVEARNKETRRIFEDAAA
Ga0224572_10272722	3300024225	Rhizosphere	MFVKLGEQVRECRLYADHCAAKAGLQTDPKLRRVYLHMQQRWLSLARSYEFSERLEFLSAIEGRNNEARLILVCQESE
Ga0228598_10094043	3300024227	Rhizosphere	MFLIPNKEARECRLHAEHCEDKARLQSDPQFRQDFLEMQQRWLSLARSYGFLERLELLSAVEAKIIRRAPDNQGRGLAEN
Ga0228598_10303161	3300024227	Rhizosphere	LYADHYAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNKEARLILVCQESE
Ga0207663_112691331	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MFLTTNKDARECCLHAEHCEDKARLQSEPKLRQDFLEMQQRWLSLARSYEFLDRLELLSAVEAKIKEVRLIKTRRP
Ga0208603_10298752	3300027109	Forest Soil	MFLTPNKEARECRLHAEHCEDKARLQSDPQFRQDFLEMQQRWLSLARSYEFLERLELLSAVEAKIKDVRLIIKDAA
Ga0208368_1065981	3300027161	Forest Soil	MFVKLSEQARECRLCADHCAAEAGLQADPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNNEARLILVCQESE
Ga0222749_107294331	3300029636	Soil	MSVSFSIEAGECRRYAGHCADRARLQSDPQLRQDFLEMQRRWLALARSYEFAERLEFLSSVDTRNKQARSIIEDAAAN
Ga0310037_102450502	3300030494	Peatlands Soil	MFVKLSEQARECRLYADLCAAKAGLQTEPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKEARLILVCQESE
Ga0265753_11494092	3300030862	Soil	MFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFAEQLEFLSAVEERNKEARLIIKDAD
Ga0075386_120395331	3300030916	Soil	MFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFAERLEFLSAVEERNKEARLVIKDAD
Ga0075371_113431463	3300030974	Soil	EASECRLYAEHCADKARLQSDPQLRQCFLEMQQRWLSLARSYEFLERLEPLSAVEEKAKEMRLINMEAAYTNPQ
Ga0170823_170140201	3300031128	Forest Soil	MFVKLSEQARECRLYADHCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNNEARLILVCKESE
Ga0170824_1118240621	3300031231	Forest Soil	LHAEHCEDKAGLQSDPQFRQDFLEMQQRWLSLARSYEFLARLELLSAVEANQRRAPDNQERGLAVN
Ga0170824_1246891151	3300031231	Forest Soil	MFVVLNQDARECRLRAEHCEDKAGLQSDPQLRQDFLEMQQRWLSLARSYEFLERLEPLSAVEEKAKEMRLINKEAAYTNPQ
Ga0170819_111469152	3300031469	Forest Soil	VRECRLYADHCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAIEERNNEARLILVCQESE
Ga0310686_1086386452	3300031708	Soil	MFVKLSEQVRECRLYADHYAAKAGLQTDPKLRRVYLHMQQRWLSLARSYEFSERLEFLSAIEGRNNEARLILVCQESE
Ga0307469_102282682	3300031720	Hardwood Forest Soil	MFLTPNKEARECRLHAEHCEDKARLQSDPQFRQDFLEMQQRWLSLARSYEFLERLELLSAVEAKIIRRAPDNQGRGLAEN
Ga0307468_1016686241	3300031740	Hardwood Forest Soil	MFVKLSEQARECRLYADHCAAKAGLQTEPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKEARLILVCQESE
Ga0306918_103975492	3300031744	Soil	VFAKPSEQARECLLYADHCAAKAGLQTDPKLRQVYLDMQQRWLSLAHSYEFSDRLKSLSTAEEKNKE
Ga0306925_115798932	3300031890	Soil	VFAKPSEQARECLLYADHCAAKAGLQTDPKLRQVYLDMQQRWLSLAHSYEFSRLKSLSTAEEKNKETRA
Ga0306925_120055972	3300031890	Soil	MFSSVSREARECRLHAEQCANKARLQFNPKLRQEFLDMQRRWLSLARCYEFSERLEFLSATETRNNEGVPHIPDCMTFPS
Ga0306923_106456282	3300031910	Soil	MFANLSEQAGECRLYAELCADKAQLQSDPQLRNDFLEMQRRWLGLARSYEFSEQLEFLSAIERNKELPSQICTD
Ga0306923_119222922	3300031910	Soil	MFVKLGEQAHECRLYADQCAAKAELQTDPKLGQVYLNMQQRWSSLARSHEFSEQLEFLSAAEERNKEARRMLGGQ
Ga0310912_104169511	3300031941	Soil	VFAKPSEQARECLLYADHCAAKAGLQTDPKLRQVYLDMQQRWLSLAHSYEFSDRLKSLSTAEEKNKETRA
Ga0310909_115450561	3300031947	Soil	MGIGFLRVGRREGAMSVNFSSEAGECRQYAEHCADRARFQSDPQLHQDFLEMRRRWLALARSYEFAERLEFLSAVETRNKETRLIIEDAAAP
Ga0306926_113586781	3300031954	Soil	VSVNFSSEAGECRLYAEHCADRARLQSDPQLRQDFLEMQRRWLALARSYEFAERLEFLSAVETRNKETRLIIEDAAAPWQLNQAAMSERHAFRLRSGEPV
Ga0306926_117051622	3300031954	Soil	FVKLGEQAHECRLYADQCAAKAELQTDPKLGQVYLNMQQRWSSLARSHEFSEQLEFLSAAEERNKEARRMLGGQEPE
Ga0306926_127846912	3300031954	Soil	MFSSVSREARECRLHAEQCANKARLQFNPKLRQEFLDMQQRWLSLARCYEFSERLEFLSATETRNNEGVPHIPDCMTFPS
Ga0307471_1040590381	3300032180	Hardwood Forest Soil	MFLTPNKEARECRLHAEHCEDKARLQSDPQFRQDFFEMQQRWLSLARSYEFLERLELLSAVEAKIIRRAPDNQGRGLAEN
Ga0307472_1003039852	3300032205	Hardwood Forest Soil	MFVSVSREASECRLYAEHCADKARLQSDPQLRQCFLEMQRRWLSLARGYEFAERLEFLSAVEERNKEARLIIKDAD
Ga0307472_1011863562	3300032205	Hardwood Forest Soil	MFVKLSEQARECRLYVDHCAAKAGLQTDPKLRQVYLHMQQRWLSLARSYEFSERLEFLSAVEERNKEARLILVCQVSE
Ga0306920_1011842752	3300032261	Soil	LVKEITILLVSGAGEGAMSVSFSIEAGECRRYAEHCADRARLQSDPQLRQDFLEMQRRWLALARSYEFAERLEFLSAVETRNKETRLIIEDP
Ga0306920_1012608722	3300032261	Soil	MLVKLGEQAHECRLYADRCAAQAELQTDPKLRQVYLRMQQRWLSLARSYEFSKRLEFLSAAEERNKETRLMLVGQEPK
Ga0306920_1022227682	3300032261	Soil	MLVKLGEQAHECRLYADHCAAKAELQTDPQLRQVYLHMQQRWLSLARSYEFSERLEFLSAAEERNKETRLMLVCQEPE
Ga0306920_1037844131	3300032261	Soil	GAMFLVIKKDARDCRLHAEHCEDKARLQSDPQLRQDFLGMQQRWLSLARSYEFLQRLELLSAVEAKIKDVCLIVKEAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099563

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences