NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099555

Metagenome / Metatranscriptome Family F099555

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099555
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 62 residues
Representative Sequence VIGSREIAAGVEPAHRNGKAATSTGGLAHDVSILLGVGRHLGSQPRANTSMTIMRAPQRG
Number of Associated Samples 94
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 22.22 %
% of genes near scaffold ends (potentially truncated) 8.74 %
% of genes from short scaffolds (< 2000 bps) 8.74 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (92.233 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(15.534 % of family members)
Environment Ontology (ENVO) Unclassified
(24.272 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.515 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.16
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF13495Phage_int_SAM_4 1.94
PF00563EAL 0.97
PF027395_3_exonuc_N 0.97
PF08530PepX_C 0.97
PF04116FA_hydroxylase 0.97
PF02518HATPase_c 0.97
PF08125Mannitol_dh_C 0.97
PF01757Acyl_transf_3 0.97
PF13673Acetyltransf_10 0.97
PF13384HTH_23 0.97
PF00239Resolvase 0.97
PF05988DUF899 0.97
PF00589Phage_integrase 0.97
PF08388GIIM 0.97
PF02371Transposase_20 0.97
PF01042Ribonuc_L-PSP 0.97
PF06742DUF1214 0.97
PF00293NUDIX 0.97
PF00196GerE 0.97
PF04392ABC_sub_bind 0.97
PF13561adh_short_C2 0.97
PF10098DUF2336 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0246Mannitol-1-phosphate/altronate dehydrogenasesCarbohydrate transport and metabolism [G] 0.97
COG0251Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 familyDefense mechanisms [V] 0.97
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 0.97
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.97
COG2200EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)Signal transduction mechanisms [T] 0.97
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.97
COG2936Predicted acyl esteraseGeneral function prediction only [R] 0.97
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.97
COG3000Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamilyLipid transport and metabolism [I] 0.97
COG3434c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domainsSignal transduction mechanisms [T] 0.97
COG3547TransposaseMobilome: prophages, transposons [X] 0.97
COG4312Predicted dithiol-disulfide oxidoreductase, DUF899 familyGeneral function prediction only [R] 0.97
COG4943Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domainsSignal transduction mechanisms [T] 0.97
COG5001Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domainSignal transduction mechanisms [T] 0.97
COG5361Uncharacterized conserved proteinMobilome: prophages, transposons [X] 0.97
COG5402Uncharacterized protein, contains DUF1214 domainFunction unknown [S] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A92.23 %
All OrganismsrootAll Organisms7.77 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005160|Ga0066820_1015389All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria556Open in IMG/M
3300006052|Ga0075029_100756810All Organisms → cellular organisms → Bacteria → Proteobacteria658Open in IMG/M
3300006354|Ga0075021_10263501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1421063Open in IMG/M
3300010339|Ga0074046_10187082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae1307Open in IMG/M
3300016294|Ga0182041_11966021All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 142544Open in IMG/M
3300027812|Ga0209656_10213745Not Available928Open in IMG/M
3300027908|Ga0209006_10187590All Organisms → cellular organisms → Bacteria1801Open in IMG/M
3300031715|Ga0307476_10473795All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales927Open in IMG/M
3300031798|Ga0318523_10103945All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1395Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil15.53%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.65%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.80%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds5.83%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.88%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.88%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil3.88%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.91%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.94%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.94%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.94%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.94%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.97%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.97%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.97%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.97%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.97%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial0.97%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.97%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.97%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.97%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.97%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.97%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.97%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.97%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.97%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut0.97%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.97%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.97%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.97%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.97%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.97%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.97%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.97%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.97%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001178Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300004022Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005160Soil and rhizosphere microbial communities from Laval, Canada - mgLMBEnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005952Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006178Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2Host-AssociatedOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010369Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 3)Host-AssociatedOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012022Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6EnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012503Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_RHost-AssociatedOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014318Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rdEnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300018029Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MGEnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300019999Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021361Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2Host-AssociatedOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300022717Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022718Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025862Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)EnvironmentalOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026291Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)EnvironmentalOpen in IMG/M
3300027090Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)EnvironmentalOpen in IMG/M
3300027094Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF022 (SPAdes)EnvironmentalOpen in IMG/M
3300027167Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF034 (SPAdes)EnvironmentalOpen in IMG/M
3300027583Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030000I_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300030005Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_2EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12646J13576_10557713300001178Forest SoilVIGGLVDVMGSREIAAGADPAHRNGKAATLTRCLGHDESMLLGVGCHLGSQSRAKTSMTIMRAPQRG
JGIcombinedJ26739_10016366233300002245Forest SoilVTGSRGVAAGTGPAGRNGEVATLKGGLAHDVSILIGIGRHLGSQPGAKVSITI
JGI25614J43888_1009486123300002906Grasslands SoilVTGSRGVAAGTGPAGRNGEVATLKGGLAHDVSILIGIGRHLGSQPGAKVSITIMRPPQRGQGQGS
Ga0055432_1022815713300004022Natural And Restored WetlandsMDLIGSREIAAGMEPAHRNEKALTVGRTHDVSMLLGVGRHLGSQPRA
Ga0063454_10097857323300004081SoilMDVIGSREIAAGVEPAHLERESRNTHRKSLAHDVSILAGAGRHLGSQPRANTSMTIMRAP
Ga0062386_10109315723300004152Bog Forest SoilLTGVVAPRAIATNVEPAQRNGKAAVLTGGLAHDVSIVLGVGRHLGSQPRAKTSITIMR
Ga0066820_101538923300005160SoilMDVSGSREIAAGVEPAHLERESRGKTHRKSLAHDVSTLPGVGRQLGSQPRANTSMTIMRAPQQGHAD
Ga0068854_10181097113300005578Corn RhizosphereVLTALMAVIGSRGIAASVKPARRNGKAARLTGGLAHDVSIVPGVGRHLGSQPRANTSITIMRAPQRGHG
Ga0066903_10745449713300005764Tropical Forest SoilMGERRTDDVIGSRELAAGAGSAHRKEQVGPITGCFAHDVSIRLGVGRHLGSQP
Ga0080026_1003422213300005952Permafrost SoilVTGSRGIAAGTGPASRTGEVATLKGGLAHDESILLGIGRHLGSPPGAKVSITIISPFLIDVGAF*
Ga0066789_1031745913300005994SoilVTGARGIVAGVGPAHRNGEVATLTGCLAHDVSILLGIGRHLGSQPGAKVSITIMR
Ga0075023_10001212613300006041WatershedsMQVIWSSEIAAREPADQNDSVSTTTDCLGHDVSIRPGVGRQLGSQPRANTSMTIMRAPQR
Ga0075029_10075681013300006052WatershedsLSEIVAGVEPAQRNGKAAALTGRLAHDVSFAVGVGRHLGSQPRANTSITIMRAPQRGHGQRSARGSSGV
Ga0075017_10101990423300006059WatershedsMIWSKETVAGAEPAHRNGEVATLTRSPVHDVSILIGVGLHLGSEPRAKTSMTIMRAPQRGHEQGSTRG
Ga0075030_10135471023300006162WatershedsLIAVIGSREIIAGVEPAHWNGKVATLAVGLSHDVSTLLGIGRHLGSQPRANTSITIMRAPQRGHGQG
Ga0075367_1028060013300006178Populus EndosphereVLTALMAVIGSRGIAASVKPARWNGKAARLTGGLAHDVSIVPGVGRHLGSQPRANTSITIMRAPQR
Ga0075021_1026350123300006354WatershedsVTGSRRVAAGVGPADRKGNVATLAGSMAHEVSILLGIGRHLGSQPRANTSITIMRPPQRGQGQG
Ga0099793_1008396143300007258Vadose Zone SoilLNGVTVPREIAAGVEPVHRNKKVATLAGGLAHDVSILFGVGRHLGSQPRAKTSITIIRAP
Ga0105249_1273987213300009553Switchgrass RhizosphereLIDVIGSSEIGAGAAPAHRNGKAATHRKSLAHDVSIVLGVGRHLGSQPHANTSITIMRAPQR
Ga0134080_1067548713300010333Grasslands SoilMDVIGSREIAAGVEPAHLERESRNTHRKSLAHDVSILAGAGRHLGSQPRANTSMTIMRAPQQGHG
Ga0074046_1018708213300010339Bog Forest SoilLIGVVAPREIAASVGPAQRNGKAAALTGGLAHDVSIVLGVGRHLGSHPRAKTSMTIMRAPQRGHGERSTRGASGV
Ga0074045_1105031913300010341Bog Forest SoilLIGVIVPRGIAASVEPAHRSENVATLTGGLAHDVSILLGVDRHRGSQPRAKTSITIMRAPQC
Ga0074044_1050862113300010343Bog Forest SoilLIGVVAAREIAASVEPAQRNGKAAALTGGLAHDVSFVLGVGRHLGSQPRAKTSMTIMRAPQRGH
Ga0074044_1076242313300010343Bog Forest SoilLIGVIVPREITASVEPAHRSENAATLTGGLAHDVSILLGVGRHLGSQPRAKTSITIMRAPQCGHGQ
Ga0126370_1262041013300010358Tropical Forest SoilVVGLREIAAGVEPTHWTGEAATLTAGLAHDVSILISVGRQLGWQPGAKVSMTI
Ga0126372_1252653623300010360Tropical Forest SoilGALISVIGSREITAGVEPAHRNGKVTTLTVGLSHDVSTVLGIGRHLGSQPRANTSGATG*
Ga0126372_1315744413300010360Tropical Forest SoilVIGSVIGMMVPREIAAGVEPVHRNEKQTRLSDLAHEVSILLGVGRHLGSQPRAKTSITIMRAPQRGHGQDST
Ga0136643_1075533013300010369Termite GutVRGALIAVIGSREITAGIKPARRNGKVATLTVGLGHDVSTVRGIGRQLGSQPRANISITIMRAPQRGHGQGS
Ga0126383_1045699513300010398Tropical Forest SoilLIEVIGSSEIAASAAPAHRNGKAATLAGGLAHDVSILLGVGCHLGSQPHANTSITIMRPPQRGHGQGSTRAAPAH
Ga0134122_1177372123300010400Terrestrial SoilLIDVIGSSEIGAGAAPAHRNGKAATLAGGVAHDVSILLGVGRHLGSQPHANTSITIMRAPQRGHGQ
Ga0137392_1041305213300011269Vadose Zone SoilVDVIGSREIAAGMEPAHRNGNAATSTEGLTHDVSILLGVGRHLGSQPRANTSMTIMRAPQRG
Ga0137393_1162766813300011271Vadose Zone SoilVTGSRGIAASAGPAHRNGEVATLKGGLAHDVSILPGIGRHLGSQPRANTSITIMRPLQRGEGQCSTRRASVEIA
Ga0120191_1004298123300012022TerrestrialMDVIESSEIAAGVAPAHRNGKAATLAGGLAHDVSILLGVGRHLGSQPHANTSITIMRPPQRGQTWRRDGVKF
Ga0137399_1072416113300012203Vadose Zone SoilMASTRDRALMDVIGSREIAAGVESAHLEEESRNAHRQPLAHDVSILLGVGRHLGS
Ga0137399_1148872513300012203Vadose Zone SoilLTGSREIAAGVGPAHRNGEVATLKGGLAHDVSTLLGIGRHLGSQPRANTSITIMRP
Ga0157313_100465313300012503Arabidopsis RhizosphereLIDVIGSSEIGAGAAPAHRNGKAATLAGGVAHDVSILLGVGRHLGS
Ga0137397_1080990423300012685Vadose Zone SoilMDVIGSREIAAGVEPARLERESRNAHRKSLAHDVSILPGVGRHLGSRPRA
Ga0137397_1089162913300012685Vadose Zone SoilMDVIGSREIAAGVEPARLEGEGRNAHRKSLAHDVSILPGVGRHLGSRPRANTSMTIM
Ga0137394_1015240813300012922Vadose Zone SoilMDVIGSREIAAGVEPARLEGEGRNAHRKSLAHDVSILPGVGRHLGSRPRANTSM
Ga0137394_1025958513300012922Vadose Zone SoilMDVIGSREIAAGVEPARLERESRNAHRQPLAHDVSILTGVGRHLGSQPRANT
Ga0137407_1156307223300012930Vadose Zone SoilMTGSRGIVAGMGPAHRNGEVATLTGVLAHDVSILLGVGRHLGSQPRANTSITIMRPPQRGQGQ
Ga0137407_1240719113300012930Vadose Zone SoilLTGSREIAAGVGPAHRNGEIATLKGGLAHDVSTLLGIGRHLGSQPRANTSITI
Ga0157378_1270772013300013297Miscanthus RhizosphereMDALMDVIGSSEIAAGVAPAHRGGKAATLTEGLAHDESILLGVGRHLGSQSRAKTSM
Ga0181532_1031321413300014164BogLSEIVAGVESAQRNGKAAALTGGLAHDVSFAVGVGRHLGSQARANTSITIMRAP
Ga0075351_117503313300014318Natural And Restored WetlandsMDVIGSSEIAAGVAPAHRNGKAATLAGGLAHDVSIVLGVDRHLGSQPRAKTSMMIMRA
Ga0137403_1004959613300015264Vadose Zone SoilLTGSREIAAGVGPAHRNGEVATLKGGLAHDVSTLLGIGRHLGSQPRANTSITIMRPPQ
Ga0134089_1047883113300015358Grasslands SoilLIEVIGSSKIAAGVKPAHRSRKTATLTGGLAHDVSILLGAGRHLGSQPRANTSTTIMRAP
Ga0132256_10213691713300015372Arabidopsis RhizosphereLIDVIGSSEIGAGAAPAHRNGKAATLAGGVAHDVSILLGVGRHLGSQPHANTSITIMRAPQRGHG*
Ga0182041_1196602113300016294SoilVIGSREITAGIEPARRNGKVATRTVGLGHDVSTVLGIGRQLGSQARANTSITIMRAPQRGHGQGSTRRASGVIS
Ga0182033_1124990013300016319SoilVDPAHQNDNVGTITEYLAHDVSNLPGVGRQLGSQPRAKTSMTIMRAPQ
Ga0182032_1167585623300016357SoilVIGSLIGMIGPREIAAGVPPAHRNGKSAMLTRDLAHDVSILPGGGRHLGSQPRAKTSITIMR
Ga0182037_1105962013300016404SoilLIAVIGSREITAGIEPALRNGKVATLTVGLGHDVSTVLGIGRQVGSQPHANTSITIMRAPQH
Ga0187802_1009421123300017822Freshwater SedimentVDVMGSREIAAGADPAHRNGKAATLTRCLGHDESMLLGVGCHLGSQSRAKTSMTIMRAPQRGHGH
Ga0187806_131683413300017928Freshwater SedimentVDVMGSREIAAGADPAHRNGKAATLTEGLAHDESILLGVGRHLGSQSRAKTSMTIIRAPQSGHEQGSTRGASG
Ga0187817_1022002723300017955Freshwater SedimentLIGVVVPREIAASVEPAHRSENVATLTGGLAHDVSILLGVGRHVGSQPRAKTSITIM
Ga0187787_1041330913300018029Tropical PeatlandVGLIGSREIAAGMEPAHRNEKAASSTHDVSMLLGVGRHLGSQPRAITSITIIGAPQR
Ga0187890_1052208823300018044PeatlandLTASTGARGIVAGVGAAHRNGEVATLTGCLGHDVSILLGIGRQLGSQPGAKVSITIMRP
Ga0184621_1008574233300018054Groundwater SedimentMDVIGSREIAAGVEPAHLERDSRNAHRQPLAHDVSILTGVGRHLGSQ
Ga0193718_107350413300019999SoilVDVIGSREIAAGVEPAHRNGKAATSTEGLTHDVSILLGVGRHLGSQPRANTSMTIMR
Ga0210406_1120037313300021168SoilVSKAVSGPREIAAGVGPAHRNVEFATLKGGLAHDVSILLGIGRHLGSQPRANTSMT
Ga0210408_1146795513300021178SoilVDVMGSREIAAGADPAHRNGKAATLTRCLGHDESMLLGVGCHLGSQSRAKTSMTIMRAPQRGHGQH
Ga0210396_1007809213300021180SoilMAVVGSRGIAASVKPARPNGKTARPTGGLAHDVSILLDIGRQLGSQPRANTSITI
Ga0210396_1042287423300021180SoilVDVIASREIAAGVEPAHRNGKAATSTGGLAHDVSILIGVGRQLGSQPRANTSMTI
Ga0213872_1038297813300021361RhizosphereMGIAAGAEPAHQNGMLYGRGESPAHDVSHLAGVGRQLGSQPRAKTSMTIMRAPQRGHGQGAARGASG
Ga0210387_1128715813300021405SoilVERINGAVGSLIGVIAPRAIAASVGPAQRNGKAAALTGDLAHDVSIVLGVGRHLGSKPRAKTSMTIMRAPQ
Ga0210394_1121565013300021420SoilVDVIGSREIAAGVEPADWNGKAATSTGVLAHDVSILLGVGRQLGSQPRAKCAS
Ga0210384_1009082013300021432SoilMAVVGSRGIAASVKPARPNGKTARPTGGLAHDVSILLDIGRQLGSQPRANTSI
Ga0242661_105785213300022717SoilMAVVGSRGIAASVKPARRNGKAARSTGGLAHDVSILLGIGRHLGWQPRANTSITIMRAPQRGHGQ
Ga0242675_109801113300022718SoilVVGAHSRALSALVAVVGSRGIAASVKPARRNGKAARSTGGLAHDVSILLDIGRHLGSQPRANTSITIMRPPQHGHGH
Ga0209483_137625013300025862Arctic Peat SoilVTWARGIVAGLGPARLNGEMATLTGCLAHDVSILLGIGRQRGSQPGAKVSITIMRPPQREQGQ
Ga0207689_1132712013300025942Miscanthus RhizosphereVLTALMAVIGSRGIAASVKPARRNGKAARLTGGLAHDVSIVPGVGRHLGSQPRANTSITIMRAPQRGHGQSREDRVRAAQA
Ga0207675_10108160913300026118Switchgrass RhizosphereLTGPREIAAGVGPAHRNGEIATRKGGLAHDVSILLVIGRHLGSQPPANTSITIMRLPQP
Ga0209890_1000230413300026291SoilVTGSRGIAAGTGPASRTGEVATLKGGLAHDESILLGIGRHLGSPPGAKVSITIISPFLIDVGAF
Ga0208604_103043813300027090Forest SoilLIGVVAAREVAASVEPAQRNGKAAALTGGLAHDVSIVLGVGRHLGSQPRAKTSMTIM
Ga0208094_10826713300027094Forest SoilMAVVGSRGIAASVKPARRNGKAARSTGGLAHDVSILLGIGRHLGWQPRANTSI
Ga0208096_10821213300027167Forest SoilVDVMGSREIAAGADPAHRNGKAATLTRCLGHDESMLLGVGCHLGSQSRANTSMTIMR
Ga0209527_110777213300027583Forest SoilMAVVGSRGIAVSVKPARRNGKAARSTGGLAHDVSILLDIGRHLGSQPRANTSITIMRAPQRGHGQGAMRGASG
Ga0209736_117288513300027660Forest SoilVIGSREIAAGVEPAHRNGKAATSTGGLAHDVSILLGVGRHLGSQPRANTSMTIMRAPQRG
Ga0207862_104621913300027703Tropical Forest SoilVAPIRSRKIVAGAEPAQRRGKSAAREGGLAHDVSKLLGLGRHLGSQPRANT
Ga0209656_1021374513300027812Bog Forest SoilLSEIVAGVEPAQQNGKAAALTGGLAHDVSIVLGVGRHLGSHPRAKTSMTIMRAPQRGHGERSTRGASGV
Ga0209693_1025405813300027855SoilVVLPREIAAGVEPVQRNGKAAALTGGLGHDVSLAVGVGRHLGSQPRAKISMTIMR
Ga0209068_1062562513300027894WatershedsVTGSRSVAAGVGPADRKGNVATLAGSMAHEVSILLGIGRHLGSQPRANTSITIMRPPQRGQGQGS
Ga0209006_1018759013300027908Forest SoilMDVIGSSAIAAGVEPAHRNGKAVTLAGGPAHDVSVLFGVGGQLGSQPGANSSMMIMRAPQRGHGQGSTRGAS
Ga0222749_1072425013300029636SoilVTESRGIVAGVGPAHRNGEMATLKGGLAHDVSILLGIGRHLGSQPGAKVSITIMRPPQRGQGQGNTRGVS
Ga0311337_1169080713300030000FenVTGSRGIAAGVRPAHRNGEVATLRGGLAHDVSILFGIGRHLGSQPRANTSITIMRP
Ga0302174_1021854713300030005FenMGADQRAHGTSTTVTGSRRIAAGAGPADRNEVVAKHKGGLAHDVSILLGFGRHLGSQPRANTS
Ga0265760_1022277113300031090SoilVDVMGSREIAAGADPAHRNGKAATLTRCLGHDESMLLGVGCHLGSQSRAKTSMTIM
Ga0170820_1187184413300031446Forest SoilVIGGLVDVMGSREIAAGADPAHRNGKAATPTRCLGHDESMLLGVGCHLGSQSRAKTSMTIMRAPQRGHGQGSTRG
Ga0318538_1083394113300031546SoilMMDVIGSREIAAGVGPAHRNEKVGTITRCLAHDVSTLLGVGRHLGSQPRAN
Ga0307476_1047379533300031715Hardwood Forest SoilVVIGSREIAAGAEPAHRNGKAAISRGVAHDVSILTGVGRHLGSQPRANTSMTIMRAPQRAHGQGSTRGLSIR
Ga0307476_1130257313300031715Hardwood Forest SoilMRSREIAAGVEPAHRNGKAATSTGGMAHDVSILIGVGRHLGSQLRANTSMTIMRAPQ
Ga0306918_1019569913300031744SoilVKPAHGSEKTATLTGCLDHDVSILLGVGCHFGSQPDAKVSMTIMRAPQHGHGQG
Ga0318543_1005560313300031777SoilSGEITAGIEPARRNRKVATLTVGLSHDVSTVLGIGRQFGSQPRANTSITIMRAPQRGTGKAAHVGRPA
Ga0302319_1074270813300031788BogMDQRAHGTSRALTGSRGIAAGVGPAHRNGEIATLKGGLAHDVSILPGIGRHLGSQPRANTSITIMRP
Ga0318523_1010394513300031798SoilLIAVIGSREITAGIEPARRNGKVATLTVGLSHDVSTVLGIGRRRGSQPRANTSMTIMRAPQRGHGQGSTRRASGVISG
Ga0318523_1062333113300031798SoilMMRLAVGGEPARQNGDAAGRGGSPAHDVSTLPGVGRHLGWQPRAKTSMTIMRAPRVAPC
Ga0307479_1080907313300031962Hardwood Forest SoilMRALMDATGSREIAAGVKPAYRTRKTATLTEGLAHEVSILLGVGRQLGWQPRANTSMTI
Ga0306922_1068924313300032001SoilLIAVIGSREITAGIEPALRNGKVATLTVGLGHDVSTVLGIGRQLGSQPRANMSITIMRAPQRGHGQ
Ga0318532_1036313123300032051SoilMGISASARAHQRALGALIAVIGSREITAGVEPAHRNGKVATLTVGLGHDVSTLLGIGRHFGSQPRANTAITIMRAPQRGHG
Ga0306924_1144322013300032076SoilMDVIGSREIVAGVEPAPRNEQAATLTGGLAHDVSILPGVGCHLGSQPRANTSMTIMRAPQREHGQGST
Ga0307470_1126716423300032174Hardwood Forest SoilVDVMGSREIAAGADPAHRNGKAATLTRCLGHDESMLLGVGCHLGSQSRAKTSMTIMRAPQRGHGQGS
Ga0310914_1146668423300033289SoilGSREITAGVEPAHRNGKVATLTVGLGHDVSTLLGIGRHFGSQPRANTAITIMRAPQRGHG
Ga0326728_1074422713300033402Peat SoilLIGVVAAREIAASVEPAQRNGKAAALTGGLAHDVSIVLGVGRHLGSHPRAKTSMTIM


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