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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F099526 |
| Family Type | Metagenome |
| Number of Sequences | 103 |
| Average Sequence Length | 62 residues |
| Representative Sequence | GPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP |
| Number of Associated Samples | 93 |
| Number of Associated Scaffolds | 103 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 2.91 % |
| % of genes from short scaffolds (< 2000 bps) | 2.91 % |
| Associated GOLD sequencing projects | 82 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.51 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (97.087 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (7.767 % of family members) |
| Environment Ontology (ENVO) | Unclassified (53.398 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (62.136 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Fibrous | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 26.74% Coil/Unstructured: 73.26% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 103 Family Scaffolds |
|---|---|---|
| PF13407 | Peripla_BP_4 | 35.92 |
| PF04199 | Cyclase | 9.71 |
| PF13416 | SBP_bac_8 | 1.94 |
| PF00532 | Peripla_BP_1 | 1.94 |
| PF05137 | PilN | 0.97 |
| PF01272 | GreA_GreB | 0.97 |
| PF00004 | AAA | 0.97 |
| PF13377 | Peripla_BP_3 | 0.97 |
| COG ID | Name | Functional Category | % Frequency in 103 Family Scaffolds |
|---|---|---|---|
| COG1878 | Kynurenine formamidase | Amino acid transport and metabolism [E] | 9.71 |
| COG3166 | Type IV pilus assembly protein PilN | Cell motility [N] | 1.94 |
| COG0782 | Transcription elongation factor, GreA/GreB family | Transcription [K] | 0.97 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 97.09 % |
| All Organisms | root | All Organisms | 2.91 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005329|Ga0070683_101591887 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | 628 | Open in IMG/M |
| 3300025945|Ga0207679_10161319 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017 | 1836 | Open in IMG/M |
| 3300031226|Ga0307497_10741438 | All Organisms → cellular organisms → Bacteria | 511 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 7.77% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 7.77% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 6.80% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 6.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 5.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 5.83% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 5.83% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 4.85% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 3.88% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 3.88% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 3.88% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 2.91% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.91% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.91% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.91% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 2.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 2.91% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.94% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.94% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.94% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.97% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.97% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.97% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.97% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.97% |
| Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 0.97% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.97% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.97% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.97% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300005093 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks | Environmental | Open in IMG/M |
| 3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 | Host-Associated | Open in IMG/M |
| 3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005447 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 | Environmental | Open in IMG/M |
| 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Environmental | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Environmental | Open in IMG/M |
| 3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
| 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
| 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
| 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Environmental | Open in IMG/M |
| 3300005555 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 | Environmental | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005576 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 | Environmental | Open in IMG/M |
| 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
| 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
| 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
| 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Host-Associated | Open in IMG/M |
| 3300006195 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Host-Associated | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
| 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Environmental | Open in IMG/M |
| 3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
| 3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
| 3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010044 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60 | Environmental | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012925 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012977 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300018027 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex | Environmental | Open in IMG/M |
| 3300018053 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1 | Environmental | Open in IMG/M |
| 3300018056 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1 | Environmental | Open in IMG/M |
| 3300018058 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300019881 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2 | Environmental | Open in IMG/M |
| 3300025893 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026552 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes) | Environmental | Open in IMG/M |
| 3300027880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027907 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028536 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300028802 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S | Environmental | Open in IMG/M |
| 3300028807 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186 | Environmental | Open in IMG/M |
| 3300028814 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 | Environmental | Open in IMG/M |
| 3300028889 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2 | Environmental | Open in IMG/M |
| 3300031170 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S | Environmental | Open in IMG/M |
| 3300031184 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S | Environmental | Open in IMG/M |
| 3300031226 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S | Environmental | Open in IMG/M |
| 3300031538 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1 | Environmental | Open in IMG/M |
| 3300031562 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Host-Associated | Open in IMG/M |
| 3300032012 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3 | Environmental | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI10216J12902_1009477221 | 3300000956 | Soil | GPSPLIVVRTAADGLRRVVGVGDGLPDGARIASLTLFPVVSVNVKGAVSFAVAPTATGEGPEGVFLAAPEP* |
| Ga0062593_1025026191 | 3300004114 | Soil | AVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP* |
| Ga0062589_1008026901 | 3300004156 | Soil | PVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP* |
| Ga0062595_1025364942 | 3300004479 | Soil | RMVGVGDSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVAPAAEP* |
| Ga0062594_1005641231 | 3300005093 | Soil | SPVIAVLVGGDGTRRVVGVGDAVPGGARITSLTLLPVVSVNAGGAVTFAVAPTATGGGPEGIFVAAPEP* |
| Ga0065715_105955501 | 3300005293 | Miscanthus Rhizosphere | RRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP* |
| Ga0065705_109584312 | 3300005294 | Switchgrass Rhizosphere | PMIVVRTAADGLRRVVGVGDRLPGGGRIATLTLLPVVSVNSAGAVSFAVAPTATGEGAEGVFLAAPAP* |
| Ga0070683_1015918872 | 3300005329 | Corn Rhizosphere | IAFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP* |
| Ga0070677_101266682 | 3300005333 | Miscanthus Rhizosphere | RIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP* |
| Ga0070660_1014174412 | 3300005339 | Corn Rhizosphere | HRVVGVGDPLPGGARIASLTLLPVVSLGGTGTVSFAVAPTATGGGPEGVFVAEAEP* |
| Ga0070660_1019437412 | 3300005339 | Corn Rhizosphere | DSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP* |
| Ga0070671_1000989491 | 3300005355 | Switchgrass Rhizosphere | AANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGAVSFAVAPTTAGAGPEGLFVATAEP* |
| Ga0070673_1001344491 | 3300005364 | Switchgrass Rhizosphere | GPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP* |
| Ga0070673_1018307492 | 3300005364 | Switchgrass Rhizosphere | VGGDGTRRVVGVGDAVPGGARITSLTLLPVVSVNAGGAVTFAVAPTATGGGPEGIFVAAPEP* |
| Ga0070667_1007539801 | 3300005367 | Switchgrass Rhizosphere | GLHRVVGVGDPLPGGARIASLTLLPVVSLGGTGTVSFAVAPTATGGGPEGVFVAEAEP* |
| Ga0070667_1023341621 | 3300005367 | Switchgrass Rhizosphere | GPSPVIAVRMAAGGPRRVVGVGDTVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVTAAEP* |
| Ga0066689_106278772 | 3300005447 | Soil | RTTAAGLQRVVGVGDSVPGGARIGSFTLLPVVSVSATGAVSFAVAPTAAGHGPEGLFLAPAP* |
| Ga0070681_105870411 | 3300005458 | Corn Rhizosphere | RVVGVGDAVPGGARITSLTLLPVVSVNAGGAVTFAVAPTATGGGPEGIFVAAPEP* |
| Ga0068867_1007938372 | 3300005459 | Miscanthus Rhizosphere | AASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAEP* |
| Ga0070706_1017619971 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | VAVGDSLPGSDHIASLTLFPVVSVGARGHVTFAVAPTATGEGPEGLFVAEPAFRP* |
| Ga0070699_1000494986 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | RRVVGVGDRLPSGARIATLTLLPIVSINRDGAVSFAVAPTATGEGPEGLFLAAP* |
| Ga0073909_105297741 | 3300005526 | Surface Soil | PSPVIVVRTSAEGLRRVVGVGDSVPGGARIASLTLLPVVSVNAAGAVSFAVAPTAAGQGPEGVFLAPAP* |
| Ga0070684_1017758792 | 3300005535 | Corn Rhizosphere | ANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP |
| Ga0068853_1021315791 | 3300005539 | Corn Rhizosphere | VGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP* |
| Ga0070672_1007717011 | 3300005543 | Miscanthus Rhizosphere | SIAGGARIASLSLLPVVSIGGGGEVSFAVAPTTAEAGPEGLFVAP* |
| Ga0070695_1003789792 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | VVAVGDPLPAGDRIASLTLYPVVGVGPRGHVTFAVAPTATGEGPEGLFTAQPFPAR* |
| Ga0066692_102398462 | 3300005555 | Soil | GDSVPSGARIATLTLLPVVSVNTGGAVSFAVVPTATGEGPEGLFLATPGP* |
| Ga0066692_104128041 | 3300005555 | Soil | VVRTTAAGLQRVVGVGDSVPGGARIGSFTLLPVVSVSATGAVSFAVAPTAAGHGPEGLFLAPAP* |
| Ga0070664_1007133141 | 3300005564 | Corn Rhizosphere | PRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP* |
| Ga0066708_110525891 | 3300005576 | Soil | TADGLRRVVGVGDRLPGGARITTLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLATPGR* |
| Ga0068864_1000476531 | 3300005618 | Switchgrass Rhizosphere | FAAAVDGGPSPVIAVRVSAGNSRRMVGVGDSVPGGERIASLSLLPVVSIGASGDVSFAVAPTTAGAGPEGLFVATGAP* |
| Ga0068870_102440751 | 3300005840 | Miscanthus Rhizosphere | GVGDSIAGGARIASLSLLPVVSIGGGGEVSFAVAPTTAEAGPEGLFVAP* |
| Ga0068860_1000634421 | 3300005843 | Switchgrass Rhizosphere | PSPVIAVRVSAGNSRRMVGVGDSVPGGERIASLSLLPVVSIGASGDVTFAVAPTTAGAGPEGLFVATGAP* |
| Ga0068862_1008069192 | 3300005844 | Switchgrass Rhizosphere | VGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP* |
| Ga0075366_104265331 | 3300006195 | Populus Endosphere | VIAVRVSAGHSRRMVGVGDSVPGGERIASLSLLPVVSIGASGDVSFAVAPTTAGAGPEGLFVATGAP* |
| Ga0075434_1002869351 | 3300006871 | Populus Rhizosphere | RRVVGVGDVLPGGARIASLTLLPVVSVNATGAVSFAVAPTATGEGPEGVFLAAPEP* |
| Ga0068865_1000624264 | 3300006881 | Miscanthus Rhizosphere | PSPVIAVRMAAGGPRRVVGVGDTVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTVGAGPEGLFVTAAEP* |
| Ga0099794_104705601 | 3300007265 | Vadose Zone Soil | TLPDGARIASLTLFPVVSVNHAGAVSFAVAPTATGKGPEGVVLAAPEH* |
| Ga0066710_1023379472 | 3300009012 | Grasslands Soil | GVGDSVPGGARIGSFTLLPVVSVSATGAVSFAVAPTAAGHGPEGLFLAPAP |
| Ga0099829_114994031 | 3300009038 | Vadose Zone Soil | TDRGALRRVVGVGDTLPDGARIASLTLFPVVSVNHAGAVSFAVAPTATGKGPEGVVLAAPEH* |
| Ga0099827_108590912 | 3300009090 | Vadose Zone Soil | QIVAVGDTLPGGDRIASLTLYPVVSVGSRGHITFAVVPTATGEGPEGLFAAVPVAPR* |
| Ga0111538_121955091 | 3300009156 | Populus Rhizosphere | PSPLIVARTGADGLRRVVGVGDGLPGGARIASLTLFPVVSVNAAGAVSFAVAPTATGEGPEGVFLATPEP* |
| Ga0105238_110912652 | 3300009551 | Corn Rhizosphere | VVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP* |
| Ga0105249_101092781 | 3300009553 | Switchgrass Rhizosphere | GLQRVVGVGDVLPDGSRIASLTRFPVVSVSPTGAVSFAVAPSPTGEGPEGVLVAPPPR* |
| Ga0126310_115574992 | 3300010044 | Serpentine Soil | VGDSVPGGARIASLSLLPVVSIGATGDVSFAVAPTTADAGPEGLFLATAAAP* |
| Ga0134127_120918641 | 3300010399 | Terrestrial Soil | MIIVRAGRDGLERMAGVGDRVPDGARIASFTLLPVVSVGPGGAVSFAVAPTATGPGPEGVFIAGP* |
| Ga0134122_101871743 | 3300010400 | Terrestrial Soil | DSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVATSAAP* |
| Ga0134121_122431082 | 3300010401 | Terrestrial Soil | GPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP* |
| Ga0137390_116056892 | 3300012363 | Vadose Zone Soil | ALRRVVGVVDTLPDGARIAALTLFPVVSVNDAGAVSFAVAPTATGKGPEGVVLAAPEH* |
| Ga0137419_114622411 | 3300012925 | Vadose Zone Soil | PVIVVLTAADGLRRVVGVGDRLPGGARITTLTLLPVVSVNTGGAVSFAVAPTATGEGPEGRFLATPGR* |
| Ga0137416_103017672 | 3300012927 | Vadose Zone Soil | QVVAVGDSLPGSDRIASLTLFPVVSVGARGHVTFAVAPTATGEGPEGLFVAEPAVRP* |
| Ga0134087_108236592 | 3300012977 | Grasslands Soil | GVGDTLPGGARIATLTLLPVVSVNTGGAVSFAVAPTATGEDPEGVFLATPEP* |
| Ga0163162_103608981 | 3300013306 | Switchgrass Rhizosphere | PSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVASAEP* |
| Ga0163162_105024133 | 3300013306 | Switchgrass Rhizosphere | GDSVPGGARIESLSLLPVVSIGAAGDISFAVTPTTTGAGPEGLFVATAEP* |
| Ga0157375_105589321 | 3300013308 | Miscanthus Rhizosphere | IAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFLVSAEP* |
| Ga0157379_102317371 | 3300014968 | Switchgrass Rhizosphere | PSPVIAVRVATGGPRRVVGVGDSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVAPAAEP* |
| Ga0132258_127465411 | 3300015371 | Arabidopsis Rhizosphere | ADGPQRVVGVGDDAPGGGRIGSLSLLPVVSIGSAGAVSFAVAPTTADPGPEGLFVSAAP* |
| Ga0132257_1028213742 | 3300015373 | Arabidopsis Rhizosphere | RIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVASAEP* |
| Ga0163161_103446612 | 3300017792 | Switchgrass Rhizosphere | AASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAE |
| Ga0184605_100984031 | 3300018027 | Groundwater Sediment | RVVGVGDSLPGGARIASFTLFPVVSVSAAGAVSFAVAPTATSGGPEGVFLAVPEP |
| Ga0184626_102206791 | 3300018053 | Groundwater Sediment | GLRRVVGVGDSLPGGARIASLTLFPVVSVSAAGAVSFAVAPTATSGGPEGVFLAAPEP |
| Ga0184623_100299021 | 3300018056 | Groundwater Sediment | DGLRRVVGVGDSLPGGARIASLTLFPVVSVSAAGAVSFAVAPTATSGGPEGVFLAEPEP |
| Ga0187766_112625392 | 3300018058 | Tropical Peatland | LRRVVAIGDALPGTDRIASLTLFPVVSVGPRGQVTFAVAPTATGEGPEGVFTAEPTR |
| Ga0066662_103351562 | 3300018468 | Grasslands Soil | IVVRTAADGLRRVVGVGDSVPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLATPGP |
| Ga0193707_10933803 | 3300019881 | Soil | QIVAVGDTLPGGDRIASLTLYPVVSVGPRGHVTFAVAPTATGEGPEGLFTAQPAPAR |
| Ga0207682_101638092 | 3300025893 | Miscanthus Rhizosphere | GPIPVIALRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP |
| Ga0207642_100517913 | 3300025899 | Miscanthus Rhizosphere | PRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP |
| Ga0207642_107652301 | 3300025899 | Miscanthus Rhizosphere | IAVRVATGGPRRVVGVGDSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVAPAAEP |
| Ga0207645_104122491 | 3300025907 | Miscanthus Rhizosphere | GVGDSVPGGTPIASLTLLPVVSVGAAGVVSFAVAPTATGGGPEGLFVAAPEP |
| Ga0207643_108499402 | 3300025908 | Miscanthus Rhizosphere | GVGDSIAGGARIASLSLLPVVSIGGGGEVSFAVAPTTAEAGPEGLFVAP |
| Ga0207705_103729851 | 3300025909 | Corn Rhizosphere | RVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATSEP |
| Ga0207644_113325731 | 3300025931 | Switchgrass Rhizosphere | IAVRVAANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGAVSFAVAPTTAGAGPEGLFVATAEP |
| Ga0207704_103663812 | 3300025938 | Miscanthus Rhizosphere | VDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVASAEP |
| Ga0207711_109365322 | 3300025941 | Switchgrass Rhizosphere | TAAVDGGPSPVIAVRMTANGPRRVISVGDSVPGGARIESLSLLPVVSIGAAGDISFAVTPTTTGAGPEGLFVATAEP |
| Ga0207679_101613191 | 3300025945 | Corn Rhizosphere | AFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP |
| Ga0207679_103288963 | 3300025945 | Corn Rhizosphere | SGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP |
| Ga0207667_120946002 | 3300025949 | Corn Rhizosphere | AASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATAD |
| Ga0207651_120692441 | 3300025960 | Switchgrass Rhizosphere | VGGDGTRRVVGVGDAVPGGARITSLTLLPVVSVNAGGAVTFAVAPTATGGGPEGIFVAAPEP |
| Ga0207712_114899291 | 3300025961 | Switchgrass Rhizosphere | TTADGLQRVVGVGDVLPDGSRIASLTRFPVVSVSPTGAVSFAVAPSPTGEGPEGVLVAPPPR |
| Ga0207658_121556901 | 3300025986 | Switchgrass Rhizosphere | GPSPVIAVRMAAGGPRRVVGVGDTVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVTAAEP |
| Ga0207648_111065372 | 3300026089 | Miscanthus Rhizosphere | AVDGGPSPVIAVRVAANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGAVSFAVAPTTAGAGPEGLFVATAEP |
| Ga0207676_117230892 | 3300026095 | Switchgrass Rhizosphere | RRRIVGVGDSIAGGARIASLSLLPVVSIGGGGEVSFAVAPTTAEAGPEGLFVAP |
| Ga0207675_1025475471 | 3300026118 | Switchgrass Rhizosphere | VAGVGDRVPGGGRIATLTLLPVVSVNAGGAVSFAVAPTATGEGADGLFLAAP |
| Ga0209577_101461061 | 3300026552 | Soil | LRRVIGVGDSLPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLATPGP |
| Ga0209481_103612791 | 3300027880 | Populus Rhizosphere | DVLPGGARIASLTLLPVVSVNATGAVSFAVAPTATGEGPEGVFLAAPEP |
| Ga0207428_112028452 | 3300027907 | Populus Rhizosphere | IVVRTGQEGLHRVVGVGDQLPDGARIASLTLLPVVSIGAAGAVSFAVAPTATGGGPEGIFLAAP |
| Ga0137415_101500253 | 3300028536 | Vadose Zone Soil | QVVAVGDSLPGSDRIASLTLFPVVSVGARGHVTFAVAPTATGEGPEGLFVAEPAVRP |
| Ga0307503_108379382 | 3300028802 | Soil | VGVGDSLPGGERIASLSLLPVVSIGAGGDVSFAVTPTTTGSGPEGLFVAAATEP |
| Ga0307305_104533471 | 3300028807 | Soil | GPSPIVIVRTGREGLRRVVGVGDSLPDGARIASLTLFPVVSVSPVGAVSFAVAPTATSGGPEGVFLAAPEP |
| Ga0307302_102728832 | 3300028814 | Soil | PSPIVIVRTGREGLRRVVGVGDSLPDGARIASLTLFPVVSVSAAGAVSFAVAPTATSGGPEGVFLAAPEP |
| Ga0247827_112079831 | 3300028889 | Soil | GQEGLHRVVGVGDQLPDGARIASLTLLPVVSIGAAGAVSFAVAPTATGGGPEGIFLAAP |
| Ga0307498_103559762 | 3300031170 | Soil | EGLHRVVGVGDPLPGGARIASLTLLPVVSLGSTGAVSFAVAPTATGGGPEGVFVAEAEP |
| Ga0307499_101982871 | 3300031184 | Soil | WAAGGPRRVVGVGDSVPGGERIASLSLLPVVSIGAGGDVSFAVAPTTTGSGPEGLFVAAAAEP |
| Ga0307497_107414382 | 3300031226 | Soil | GTIAFTAAVDGGPSPVIAVRMAATGPRRMVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFVATAEP |
| Ga0310888_101931191 | 3300031538 | Soil | IAFTAAVDGGPSPVIAVRMSDGKPRRVVGVGDSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVATSAAP |
| Ga0310888_105462701 | 3300031538 | Soil | GGPSPVIAVRVAAGGPRRVVGVGDSVPGGERIASLSLLPVVSIGATGDVSFAVAPTTAGAGPEGLFVAPAAEP |
| Ga0310886_108105852 | 3300031562 | Soil | MAAGGPRRVVGVGDTVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVTAAEP |
| Ga0307469_102396251 | 3300031720 | Hardwood Forest Soil | VVAVGDTLPGGDRIASLTLYPVVSVGSRGHVTFAVVPTATGEGPEGLFAGEPVADR |
| Ga0307469_107798932 | 3300031720 | Hardwood Forest Soil | IVVRTGRAGLHRVVGVGDELPGGGRIASLTLLPVVSLGAAGSVSFAVAPTATGGGPEGVFLAAPEL |
| Ga0307469_109902862 | 3300031720 | Hardwood Forest Soil | VRVAAGASRRVVGVGDSVPGGERIASLSLLPVVSIGAGGDVSFAVAPTTTGSGPEGLFVAAVAEP |
| Ga0307416_1019869462 | 3300032002 | Rhizosphere | VGDGLPGGARITSLTLLPVVSVNAAGAVSFAVAPTSTGEGPEGVFLATPEP |
| Ga0310902_100363113 | 3300032012 | Soil | DGGPSPVIAVRMSDGKPRRVVGVGDSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVATSAAP |
| Ga0310890_111116372 | 3300032075 | Soil | AVDGGPSPVIAVRVAAGGPRRVIGVGDSVPGGERIASLSLLPVVSIGAGGDVSFAVAPTTTGSGPEGLFVAAATEP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |