Metagenome / Metatranscriptome Family F099522

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099522
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	64 residues
Representative Sequence	MSTWTKIALILTVLGTIGVGVLPMIGRTTASGGGISFRSSGWRSSWLVAWIVFLIGVALTAYVR
Number of Associated Samples	78
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.84 %
% of genes near scaffold ends (potentially truncated)	36.89 %
% of genes from short scaffolds (< 2000 bps)	86.41 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.728 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.534 % of family members)
Environment Ontology (ENVO)	Unclassified (38.835 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.602 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.17% β-sheet: 6.52% Coil/Unstructured: 41.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
f.63.1.1: Claudin	d4p79a1	4p79	0.72145
a.102.1.3: N-acylglucosamine (NAG) epimerase	d1fp3a_	1fp3	0.71899
f.5.1.0: automated matches	d5azsa_	5azs	0.71408
f.63.1.1: Claudin	d3jbre_	3jbr	0.71041
a.4.5.0: automated matches	d5x14a1	5x14	0.70548

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF02826	2-Hacid_dh_C	16.50
PF02615	Ldh_2	13.59
PF02518	HATPase_c	10.68
PF00528	BPD_transp_1	6.80
PF04392	ABC_sub_bind	2.91
PF00496	SBP_bac_5	1.94
PF09900	DUF2127	1.94
PF12911	OppC_N	0.97
PF12729	4HB_MCP_1	0.97
PF01070	FMN_dh	0.97
PF00158	Sigma54_activat	0.97
PF11249	DUF3047	0.97
PF12680	SnoaL_2	0.97
PF06474	MLTD_N	0.97
PF12704	MacB_PCD	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	13.59
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.91
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.97
COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.73 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.73 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.73 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	26.21 %
Unclassified	root	N/A	24.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	26.21 %
Unclassified	root	N/A	24.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6.80 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.97 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	26.21 %
Unclassified	root	N/A	24.27 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.27 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
unclassified Ensifer	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Ensifer sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp.	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101771509	Not Available	537	Open in IMG/M
3300000443\|F12B_10028995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2564	Open in IMG/M
3300000550\|F24TB_10037767	All Organisms → cellular organisms → Bacteria → Proteobacteria	4461	Open in IMG/M
3300000955\|JGI1027J12803_106675766	Not Available	525	Open in IMG/M
3300000956\|JGI10216J12902_100092691	All Organisms → cellular organisms → Bacteria → Proteobacteria	2187	Open in IMG/M
3300002899\|JGIcombinedJ43975_10100492	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300004633\|Ga0066395_10484978	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	710	Open in IMG/M
3300005294\|Ga0065705_10457585	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300005332\|Ga0066388_100626447	Not Available	1694	Open in IMG/M
3300005332\|Ga0066388_104136897	Not Available	740	Open in IMG/M
3300005332\|Ga0066388_108086531	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005347\|Ga0070668_101103429	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300005440\|Ga0070705_100049396	All Organisms → cellular organisms → Bacteria	2442	Open in IMG/M
3300005445\|Ga0070708_101476672	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005539\|Ga0068853_102412628	Not Available	509	Open in IMG/M
3300005543\|Ga0070672_101453808	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300005713\|Ga0066905_100103962	All Organisms → cellular organisms → Bacteria	1936	Open in IMG/M
3300005713\|Ga0066905_100560796	All Organisms → cellular organisms → Bacteria → Proteobacteria	960	Open in IMG/M
3300005713\|Ga0066905_100962046	Not Available	751	Open in IMG/M
3300005713\|Ga0066905_101523608	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	609	Open in IMG/M
3300005713\|Ga0066905_102271294	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005719\|Ga0068861_100245458	All Organisms → cellular organisms → Bacteria	1525	Open in IMG/M
3300005764\|Ga0066903_100446564	All Organisms → cellular organisms → Bacteria → Proteobacteria	2158	Open in IMG/M
3300005764\|Ga0066903_100520205	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300005764\|Ga0066903_100739452	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300005764\|Ga0066903_103554440	Not Available	840	Open in IMG/M
3300006049\|Ga0075417_10108781	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300006196\|Ga0075422_10093736	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300006577\|Ga0074050_10773743	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300006844\|Ga0075428_102174366	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300006852\|Ga0075433_11830332	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300006853\|Ga0075420_100197134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1759	Open in IMG/M
3300006854\|Ga0075425_100213734	All Organisms → cellular organisms → Bacteria → Proteobacteria	2218	Open in IMG/M
3300007076\|Ga0075435_100540817	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300009553\|Ga0105249_11052784	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300009792\|Ga0126374_10903755	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	684	Open in IMG/M
3300010046\|Ga0126384_10148811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1800	Open in IMG/M
3300010047\|Ga0126382_10574327	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300010047\|Ga0126382_11226684	Not Available	673	Open in IMG/M
3300010359\|Ga0126376_10393070	Not Available	1246	Open in IMG/M
3300010362\|Ga0126377_10201771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp.	1907	Open in IMG/M
3300010362\|Ga0126377_10514570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1231	Open in IMG/M
3300010362\|Ga0126377_11213801	Not Available	825	Open in IMG/M
3300010375\|Ga0105239_13223632	Not Available	531	Open in IMG/M
3300010398\|Ga0126383_10287213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1636	Open in IMG/M
3300010398\|Ga0126383_11725946	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300010399\|Ga0134127_10016131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5689	Open in IMG/M
3300012210\|Ga0137378_10841219	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	830	Open in IMG/M
3300012948\|Ga0126375_10430311	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	963	Open in IMG/M
3300012971\|Ga0126369_11065570	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	897	Open in IMG/M
3300012971\|Ga0126369_11434889	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300015371\|Ga0132258_10044000	All Organisms → cellular organisms → Bacteria	10172	Open in IMG/M
3300016270\|Ga0182036_10985705	Not Available	694	Open in IMG/M
3300016270\|Ga0182036_11747673	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300016294\|Ga0182041_11670193	Not Available	589	Open in IMG/M
3300016319\|Ga0182033_10211400	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1551	Open in IMG/M
3300016319\|Ga0182033_10987849	Not Available	748	Open in IMG/M
3300016371\|Ga0182034_10844769	Not Available	785	Open in IMG/M
3300016387\|Ga0182040_10451520	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1019	Open in IMG/M
3300016404\|Ga0182037_12037487	Not Available	515	Open in IMG/M
3300016422\|Ga0182039_10489297	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1061	Open in IMG/M
3300016445\|Ga0182038_11067838	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300017792\|Ga0163161_11052509	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300025910\|Ga0207684_10816106	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	788	Open in IMG/M
3300025942\|Ga0207689_10460204	Not Available	1064	Open in IMG/M
3300025961\|Ga0207712_11810600	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	547	Open in IMG/M
3300028587\|Ga0247828_10914905	Not Available	566	Open in IMG/M
3300031170\|Ga0307498_10146257	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	779	Open in IMG/M
3300031226\|Ga0307497_10540192	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300031543\|Ga0318516_10391527	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	801	Open in IMG/M
3300031573\|Ga0310915_10729834	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	699	Open in IMG/M
3300031668\|Ga0318542_10406151	Not Available	704	Open in IMG/M
3300031681\|Ga0318572_10584623	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300031720\|Ga0307469_10015607	All Organisms → cellular organisms → Bacteria	3936	Open in IMG/M
3300031720\|Ga0307469_10064295	Not Available	2392	Open in IMG/M
3300031720\|Ga0307469_10072235	All Organisms → cellular organisms → Bacteria	2293	Open in IMG/M
3300031720\|Ga0307469_10079671	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2213	Open in IMG/M
3300031720\|Ga0307469_10146321	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1760	Open in IMG/M
3300031720\|Ga0307469_10299331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1324	Open in IMG/M
3300031740\|Ga0307468_100418583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1030	Open in IMG/M
3300031740\|Ga0307468_101182473	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	688	Open in IMG/M
3300031744\|Ga0306918_10553154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	902	Open in IMG/M
3300031747\|Ga0318502_10418785	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300031765\|Ga0318554_10206008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1119	Open in IMG/M
3300031770\|Ga0318521_10206862	Not Available	1135	Open in IMG/M
3300031793\|Ga0318548_10550773	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	562	Open in IMG/M
3300031820\|Ga0307473_10738357	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300031820\|Ga0307473_11176709	Not Available	569	Open in IMG/M
3300031859\|Ga0318527_10171315	Not Available	915	Open in IMG/M
3300031890\|Ga0306925_10714190	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1048	Open in IMG/M
3300031896\|Ga0318551_10558262	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	659	Open in IMG/M
3300031941\|Ga0310912_10610081	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	849	Open in IMG/M
3300031942\|Ga0310916_11100826	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031981\|Ga0318531_10472320	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300032044\|Ga0318558_10270673	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	838	Open in IMG/M
3300032052\|Ga0318506_10126662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1107	Open in IMG/M
3300032076\|Ga0306924_10128120	All Organisms → cellular organisms → Bacteria	2893	Open in IMG/M
3300032180\|Ga0307471_100256261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1806	Open in IMG/M
3300032180\|Ga0307471_101677738	Not Available	790	Open in IMG/M
3300032180\|Ga0307471_102185326	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300032205\|Ga0307472_100431857	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300033289\|Ga0310914_11345836	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	617	Open in IMG/M
3300034417\|Ga0364941_134595	Not Available	614	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.50%
Host-Associated	Host-Associated	16.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.50%
Plants	Host-Associated → Plants	16.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.85%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.05%
Loam	Environmental → Terrestrial → Soil → Loam	17.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.53%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	13.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1017715092	3300000364	Soil	MTTWMKIALVLNVLGTIGVGLIPIVGRTAGPGGGVSFRSSGWRSGWLVAWIVFLLGIVLAAAAR*
F12B_100289952	3300000443	Soil	MTTWMKIALVLNILGTIGVGVIPMVGRTAGPGGGVAFRSSGWRSGWLVAWIVFLVGIALGAAAR*
F24TB_100377672	3300000550	Soil	MTTWMKIALVLNILGTIGVGVIPIVGRTAGPGGGVAFRSSGWRSGWLVAWIVFLVGIALGAAAR*
JGI1027J12803_1066757661	3300000955	Soil	MTTWMKIALVLNILGTIGVGVIPIVGRIAGPGGGVAFRSSGWRSGWLVAWIVFLVGIALGAAAR*
JGI10216J12902_1000926913	3300000956	Soil	ALTVLGTVGVGVLPMIGRTTASGGEIRFRSPGWRSSWLVAWLVFMIGVALTGYVR*
JGIcombinedJ43975_101004921	3300002899	Soil	MIGNEGSAMTAWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAAR*
Ga0066395_104849782	3300004633	Tropical Forest Soil	MSTWTKIALILTVLGTIGVGVLPMIGRTTASGGGISFRSSGWRSSWLVAWIVFLIGVALTAYVR*
Ga0065705_104575852	3300005294	Switchgrass Rhizosphere	MIGPNEGSAMTAWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAAR*
Ga0066388_1006264473	3300005332	Tropical Forest Soil	MTTWMKIALVLNVLGTIGVGVIPVVGRTAGPGGGVAFRSSRWRSAWLVAWIVFVVGIALMAAAH*
Ga0066388_1041368971	3300005332	Tropical Forest Soil	PHEHEMNGARGMSAWTKVALILTVLGTIGVGVLPMIGRTTATGGGIRFRSSAWRSGWLVAWIVFLVGVALTAYVR*
Ga0066388_1080865311	3300005332	Tropical Forest Soil	MIRPNEGSAMTTWMKIALILNILGTVVVGVIPMIGRTAGAGGGITFRSSAWRSSWLVGWI
Ga0070668_1011034292	3300005347	Switchgrass Rhizosphere	MIGPNEGSAMTAWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSS
Ga0070705_1000493962	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTMATWTKIALALTVLGTVGVGVIPMIGRTTASGGEIRFRSPGWRSSWLVAWLVFMIGVALTAYVR*
Ga0070708_1014766723	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTMSTWTKIALILTVLGTIGVGVLPMIGRTTASGGGISFRSSGWRSSWLVAWIVFLIGVALTAYVR*
Ga0068853_1024126281	3300005539	Corn Rhizosphere	TAMIRPNEGSAMTTWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAAR*
Ga0070672_1014538082	3300005543	Miscanthus Rhizosphere	MIGPNEGSAMTAWMKIALILNILGTVVVAVIPMIGRTTGAGGGITFRSSAWRSSWL
Ga0066905_1001039622	3300005713	Tropical Forest Soil	MTTWMKIALVLNVLGTIGVGVIPIVGRTAGAGGGVAFRSSGWRSGWLVAWIVFLLGIALAAAAR*
Ga0066905_1005607962	3300005713	Tropical Forest Soil	MTTWMKVALALNILGTVGVGVIPIIGRTAGASGVAFRSSAWRSGWLVGWIVFLVGIALMAALV*
Ga0066905_1009620461	3300005713	Tropical Forest Soil	MTTWMKIAFVLNILGTIGVGVIPIVGRTAGAAGGIAFRSSGWRSGWLVAWIVFLVGIALMAAAH*
Ga0066905_1015236081	3300005713	Tropical Forest Soil	MIRPNEGSAMTTWMKIALILNILGTVVVGVIPMIGRTAGAGGGITFRSSAWRSSWLVGWILFLVGLALMAAAH*
Ga0066905_1022712942	3300005713	Tropical Forest Soil	MERDDAMTTWMKIALVLNVLGTIGVGVIPVVGRTAGPGGGVAFRSSRWRSAWLVAWIVFVVGIALMAAAH*
Ga0068861_1002454583	3300005719	Switchgrass Rhizosphere	LGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAAR*
Ga0066903_1004465643	3300005764	Tropical Forest Soil	MTTWMKVALVLNILGTVVVGVIPMIARIAGAGGGVTFRSSAWRSTWLVGWIVFLVGIALMAALV*
Ga0066903_1005202053	3300005764	Tropical Forest Soil	MTTWMKIALVLNVLGTIGVGVIPIVGRTAGASGGVAFRSSGWRSGWLVAWIVFLLGIALAAAAR*
Ga0066903_1007394522	3300005764	Tropical Forest Soil	MTTWMKVALALNILGTVGVGVIPIIGRTAGAGGVAFRSSAWRSGWLVGWIVFLVGIALMAALV*
Ga0066903_1035544402	3300005764	Tropical Forest Soil	MSAWTKVALILTVLGTIGVGVLPMIGRTTATGGGIRFRSSAWRSGWLVAWIVFLVGVALTAYVR*
Ga0075417_101087812	3300006049	Populus Rhizosphere	AMTTWMKIALVLNVLGTIGVGLIPIVGRTAGPGGGVSFRSSGWRSGWLVAWIVFLLGIVLAAAAR*
Ga0075422_100937362	3300006196	Populus Rhizosphere	MIEPNEGSAMTAWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAAR*
Ga0074050_107737432	3300006577	Soil	MTTWMKIALVVNILGTIGVGILPMIGRTVGAGGGVTFRSAGWRTAWLVAWLVFLIGIALTAAAR*
Ga0075428_1021743661	3300006844	Populus Rhizosphere	MSTWTKIAITLTVLGTIGIGVLPMIGRTTAPGGGICFRGARWRSSWLVAWLVFFIGIALIAYVR*
Ga0075433_118303322	3300006852	Populus Rhizosphere	KIALVLNVLGTIGVGLIPIVGRTAGPGGGVSFRSSGWRSGWLVAWIVFLLGIVLAAAAR*
Ga0075420_1001971343	3300006853	Populus Rhizosphere	MKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAAR
Ga0075425_1002137343	3300006854	Populus Rhizosphere	EGSAMTAWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLVGWILFLVGLALMAAAH*
Ga0075435_1005408172	3300007076	Populus Rhizosphere	MTTWMKIALVLNVIGTIGVGVIPIVGRTAGPGGGVSFRSSGWRSGWLVAWIVFLLGIVLAAAAR*
Ga0105249_110527841	3300009553	Switchgrass Rhizosphere	MKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAA
Ga0126374_109037551	3300009792	Tropical Forest Soil	MTMSIWTKIALILTVLGTIGVGVLPMIGRTTASGGGISFRSSGWRSSWLVAWIVFLIGVALTAYGH*
Ga0126384_101488113	3300010046	Tropical Forest Soil	LGTIGVGVIPIVGRTAGAGGGVAFRSSGWRSGWLVAWIVFLLGIALAAAAR*
Ga0126382_105743271	3300010047	Tropical Forest Soil	MTTWMKIALILNILGTVVVGVIPMIGRTAGAGGGITFRSSAWRSSWLVGWILFLVGLALMAAAH*
Ga0126382_112266841	3300010047	Tropical Forest Soil	TVGVGVIPMIGRSAGIGGGVTFRSSAWRSGWLVGWIVFLIGIALMAAAL*
Ga0126376_103930701	3300010359	Tropical Forest Soil	MKIALVLNILGTVGVGVIPIIGRTAGAGGVAFRSSAWRSGWLVGWIVFLVGIALMAALV*
Ga0126377_102017711	3300010362	Tropical Forest Soil	MTTWMKIALVLNVLGTIGVGVIPIVGRTAGAGGGVAFRSSGWRSGWLVAWIVFLVGIALMAAAH*
Ga0126377_105145702	3300010362	Tropical Forest Soil	MTTWMKVALILNILGTVVVGVIPMIGRIAGAGGGITFRSSAWRSSWLVGWIVFLVGIALMAALV*
Ga0126377_112138012	3300010362	Tropical Forest Soil	WMKIALVLNILGTVGVGVIPIIGRTAGAGGVAFRSSAWRSGWLVGWIVFLVGIALMAALV
Ga0105239_132236322	3300010375	Corn Rhizosphere	MTAWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAAR*
Ga0126383_102872134	3300010398	Tropical Forest Soil	MSTWTKIALILTVLGTIGVGVLPMIGRTAATGGGISFRSSGWRSSWLVAWIVFLIGVALTAYVR*
Ga0126383_117259462	3300010398	Tropical Forest Soil	MSTLTKIALILTVLGTIGVGVLPMIGRTTTPGEGISFRGSGWRSSWLVAWIVFLIGVALIAYVR*
Ga0134127_100161313	3300010399	Terrestrial Soil	MIGLNEGSAMTAWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAAR*
Ga0137378_108412192	3300012210	Vadose Zone Soil	MTMSTWTKIALALTVLGTIGVGVLPMIGRTVSGGGISFRSPGWRSSWLVAWLIFLIGVALTAYVR*
Ga0126375_104303112	3300012948	Tropical Forest Soil	AVLHWRLTNTKRMERMKMSAWTKIALILTVLGTIGVGVLPMIGRTTAAGGGISFRSSGWRSSWLVAWIVFLIGVALTAYVR*
Ga0126369_110655701	3300012971	Tropical Forest Soil	TWTKIALTLTVLGTIGVGVLPMIGRTTASGGGISFRSPGWRSSWLLAWIVFLIGVALTAYVR*
Ga0126369_114348892	3300012971	Tropical Forest Soil	MSTWTKIALTLTILGTIGVGVIPMIGRASLRRGLDFRSAGWRSSWLVAWIVFLIGVALIAYVR*
Ga0132258_100440007	3300015371	Arabidopsis Rhizosphere	MKIALILNILGTVVVGVIPMIGRIAGAGGGITFRSSAWRSSWLVGWILFLVGLALMAAAH
Ga0182036_109857052	3300016270	Soil	MSTWTKIALILTVLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFL
Ga0182036_117476732	3300016270	Soil	MSAWTKIALILTVLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFL
Ga0182041_116701931	3300016294	Soil	TLTVLGTLGVGILPMIGRTTTSSGGISFRATGWRTSWLVAWIVFLIGAVLTAYAH
Ga0182033_102114002	3300016319	Soil	MSTWTKIALTLTVLGTLGVGILPMIGRTTTSNGGTSFRATGWRTSWLVAWIIFLIGVALTAYVH
Ga0182033_109878492	3300016319	Soil	MSAWTEIALILTVLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFLIGVALTAYVR
Ga0182034_108447692	3300016371	Soil	MSAWTKIALILTVLGTIGVGILPMIGRTAASGGGRSFRSAGWRSSWLVAWIVFLIGVALTAYVR
Ga0182040_104515201	3300016387	Soil	CVTLTKGAMDMSTWTKIALTLTVLGTLGVGILPMIGRTTTSSGGISFRATGWRTSWLVAWIIFLIGVALTAYVH
Ga0182037_120374871	3300016404	Soil	MSAWTKIALILTVLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFLIGVALT
Ga0182039_104892972	3300016422	Soil	MSTWTKIALTLTVLGTLGVGILPMIGRTTTSSGGISFRATGWRTSWLVAWIIFLIGVALTAYVH
Ga0182038_110678382	3300016445	Soil	MTASCPALAPHEHETNGAHEMSAWTKIALILTVLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFLIGVALTAYVR
Ga0163161_110525092	3300017792	Switchgrass Rhizosphere	MIGPNEGSAMTAWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLVGIALMAAAR
Ga0207684_108161062	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSTWTKIALILTVLGTIGVGVLPMIGRTTASGGGISFRSSGWRSSWLVAWIVFLIGVALTAYVR
Ga0207689_104602041	3300025942	Miscanthus Rhizosphere	MTMATWTKIALALTVLGTVGVGVIPMIGRTTASGGEIRFRSPGWRSSWLVAWLVFMIGVALTAYVR
Ga0207712_118106001	3300025961	Switchgrass Rhizosphere	MIGPNEGSAMTAWMKIALILNILGTVVVGVIPMIGRTTGAGGGITFRSSAWRSSWLAGWILFLV
Ga0247828_109149052	3300028587	Soil	MIRPNEGSAMTTWMKIALILNILGTVVVGVIPMIGRIAGAGGGITFRSSAWRSSWLVGWILFLVGLALMAAAH
Ga0307498_101462571	3300031170	Soil	MTTWMKIALVVNILGTLGVGILPMIGRTAGVGGVTFRSAGWRTAWLVSWIVFLAGIALTAAAR
Ga0307497_105401922	3300031226	Soil	MTMATWTKIALALTVLGTVGVGVLPMIGRTTASGGEIRFRSPGWRSSWLVAWLVFMIGVALTAYVR
Ga0318516_103915272	3300031543	Soil	MSAWTKIALILTVLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFLIGVALTAYVR
Ga0310915_107298342	3300031573	Soil	MDMSTWTKIALTLTVLGTLGVGILPMIGRTTTSSGGISFRATGWRTSWLVAWIIFLIGVALTAYVH
Ga0318542_104061511	3300031668	Soil	MSTWTKIALTLTVLGTLGVGVLPMIGRTTTSSGGISFRTAGWRTSWLVAWIIFLIGVALTAYVH
Ga0318572_105846232	3300031681	Soil	MSAWTKIALILTVLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFLIGVA
Ga0307469_100156074	3300031720	Hardwood Forest Soil	MIRPNEGSAMTTWMKIALILNILGTVVVGVIPMIGRIAVAGGGITFRSSAWRSSWLVGWILFLVGLALMAAAH
Ga0307469_100642951	3300031720	Hardwood Forest Soil	MTTWMKIALVLNILGTIGVGVIPIVGRIAGPGGGVAFRSSGWRSGWLVAWIVFLVGIALGAAAR
Ga0307469_100722352	3300031720	Hardwood Forest Soil	MSTWTKIALALTVLGTVGVGVLPMIGRTTASGGEIRFRSPGWRSSWLVAWLVFMIGVALTGYVR
Ga0307469_100796713	3300031720	Hardwood Forest Soil	MYEGNAMTTWMKIALVVNILGTIGVGILPMIGRTAGAGGGVTFRSAGWRTAWLVAWIVFLIGIAITAAAR
Ga0307469_101463211	3300031720	Hardwood Forest Soil	RRERDDAMTTWMKIALVLNILGTLGVGVIPMVGRTAGPGGGVAFRSSGWRSGWLLAWIVFLVGIALASAAR
Ga0307469_102993312	3300031720	Hardwood Forest Soil	MTTWMKIALVLNVLGTIGVGVIPIVGRTAGPGGGVSFRSSGWRSGWLVAWIVFLLGIVLAAAAR
Ga0307468_1004185832	3300031740	Hardwood Forest Soil	TIGVGILPMIGRTAGAGGGVTFRSAGWRTAWLVAWIVFLIGIAITAAAR
Ga0307468_1011824731	3300031740	Hardwood Forest Soil	AMTTWMKIALVLNILGTLGVGVIPMVGRTAGPGGGVAFRSSGWRSGWLLAWIVFLVGIALASAAR
Ga0306918_105531541	3300031744	Soil	MSTWTKIALTLTVLGTLGVGVLPMIGRTTTSSGGISFRTAGWRTSWLVAWIIFLIGVAL
Ga0318502_104187851	3300031747	Soil	MSVWTKIALILTVLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFLI
Ga0318554_102060082	3300031765	Soil	MSTWTKIALTLTVLGTIGVGVLPMIGRTPDSRGGISFRSSGWRSSWLVAWIVF
Ga0318521_102068621	3300031770	Soil	MLTKGAMEMSTWTKIALTLTVLGTLGVGVLPMIGRTTTSSGGISFRTAGWRTSWLVAWIIFLIGVALTAYV
Ga0318548_105507731	3300031793	Soil	VLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFLIGVALTAYVR
Ga0307473_107383571	3300031820	Hardwood Forest Soil	MATWTKIALALTVLGTVGVGVLPMIGRTTASGGEIRFRSPGWRSSWLVAWLVFMIGVALTAYVR
Ga0307473_111767092	3300031820	Hardwood Forest Soil	EGSAMTTWMKIALILNILGSVVVGVIPMIGRIAGAGGGITFRSSAWRSSWLVGWIVFLVGIAIMAAAR
Ga0318527_101713151	3300031859	Soil	MSTWTKIALILTVLGTIGVGVLPMIGRTTASGGGISFRSSGWRSSWLVAWIVFLIGVALTAYGR
Ga0306925_107141902	3300031890	Soil	MSTWTKIALTLTVLGTLGVGVLPMIGRTTTSSGGISFRATGWRTSWLVAWIIFLIGVALTAYVH
Ga0318551_105582622	3300031896	Soil	TKIALTLTVLGTIGVGVLPMIGRTPDSRGGISFRSSGWRSSWLVAWIVFLIGVALTAYVR
Ga0310912_106100812	3300031941	Soil	MEMSTWTKIALTLTVLGTLGVGILPMIGRTTTSSGGISFRATGWRTSWLVAWIIFLIGVALTAYVH
Ga0310916_111008262	3300031942	Soil	MSTWTKIALTLTVLGTIGVGVLPMIGRTPDSRGGISFRSSGWRSSWLVAWIVFLIGVALTAYVR
Ga0318531_104723201	3300031981	Soil	MSAWTKIALILTVLGTIGVGILPMIGRTAASGGGMSFRSAGWRSSWLVAWIVFLI
Ga0318558_102706732	3300032044	Soil	MDMSTWTKIALTLTVLGTLGVGILPMIGRTTTSSGGISFRTAGWRTSWLVAWIIFLIGVALTAYVH
Ga0318506_101266621	3300032052	Soil	MSTWTKIALTLTVLGTIGVGVLPMIGRTPDSRGGISFRSSGWRSSWLVAWIVFLIGVALT
Ga0306924_101281202	3300032076	Soil	MSTWTKIALTLTVLGTLGVGILPMIGRTTTSSGGISFRTAGWRTSWLVAWIIFLIGVALTASAH
Ga0307471_1002562612	3300032180	Hardwood Forest Soil	MYEGNAMTTWMKIALVVNILGTIGVGVLPMIGRTAGAGGGVTFRSAGWRTAWLVAWIVFLIGIALTAAAR
Ga0307471_1016777382	3300032180	Hardwood Forest Soil	MTTWMKIALVLNILGTIGVGVIPMVGRTAGPGGGVGFRSSGWRSGWRVAWIVFLVGIALGAAAR
Ga0307471_1021853262	3300032180	Hardwood Forest Soil	MTTWMKIALVLNILGTLGVGVIPMVGRTAGPGGGVAFRSSGWRSGWLLAWIVFLVGIALASAAR
Ga0307472_1004318572	3300032205	Hardwood Forest Soil	MTTWMKIALVLNVLGTIGVGLIPIVGRTAGPGGGVSFRSSGWRSGWLVAWIVFLLGIVLAAAAR
Ga0310914_113458362	3300033289	Soil	TLTNSRCVTLTKGAMDMSTWTKIALTLTVLGTLGVGILPMIGRTTTSSGGISFRATGWRTSWLVAWIIFLIGVALTAYVH
Ga0364941_134595_335_547	3300034417	Sediment	MYEGNAMTTWMKIALVVNILGTIGVGILPMIGRTAGAGGGVTFRSAGWRTAWLVAWLVFLIGIALTAAAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099522

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences