Metagenome / Metatranscriptome Family F099468

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099468
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	63 residues
Representative Sequence	MDHLMIVMAAGKTLIVSSDSRGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK
Number of Associated Samples	74
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	57.28 %
% of genes near scaffold ends (potentially truncated)	36.89 %
% of genes from short scaffolds (< 2000 bps)	77.67 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.553 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere (9.709 % of family members)
Environment Ontology (ENVO)	Unclassified (38.835 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.398 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 27.59% Coil/Unstructured: 72.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00072	Response_reg	49.51
PF02518	HATPase_c	11.65
PF01590	GAF	3.88
PF13492	GAF_3	2.91
PF00012	HSP70	1.94
PF01839	FG-GAP	0.97
PF00149	Metallophos	0.97
PF01435	Peptidase_M48	0.97
PF03551	PadR	0.97
PF07963	N_methyl	0.97
PF08281	Sigma70_r4_2	0.97
PF10589	NADH_4Fe-4S	0.97
PF00574	CLP_protease	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.97
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.97
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	76.70 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	76.70 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	14.56 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	4.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	14.56 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	10.68 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	6.80 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.85 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	3.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	6.80 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.85 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	3.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104485483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	697	Open in IMG/M
3300003323\|rootH1_10094815	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1909	Open in IMG/M
3300004153\|Ga0063455_100805718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	651	Open in IMG/M
3300004803\|Ga0058862_12066151	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	722	Open in IMG/M
3300005336\|Ga0070680_101011042	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	718	Open in IMG/M
3300005341\|Ga0070691_10169080	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1132	Open in IMG/M
3300005435\|Ga0070714_100049870	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3564	Open in IMG/M
3300005455\|Ga0070663_102147302	Not Available	504	Open in IMG/M
3300005458\|Ga0070681_10024358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6093	Open in IMG/M
3300005458\|Ga0070681_11585274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	580	Open in IMG/M
3300005458\|Ga0070681_11814563	Not Available	537	Open in IMG/M
3300005466\|Ga0070685_10037757	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2737	Open in IMG/M
3300005538\|Ga0070731_10136567	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1625	Open in IMG/M
3300005563\|Ga0068855_100045058	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5218	Open in IMG/M
3300005563\|Ga0068855_100320726	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1713	Open in IMG/M
3300005578\|Ga0068854_101718795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	574	Open in IMG/M
3300006046\|Ga0066652_100246590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1562	Open in IMG/M
3300006237\|Ga0097621_100493602	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1108	Open in IMG/M
3300006755\|Ga0079222_11858468	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	585	Open in IMG/M
3300006804\|Ga0079221_11469532	Not Available	546	Open in IMG/M
3300009093\|Ga0105240_10057949	All Organisms → cellular organisms → Bacteria	4837	Open in IMG/M
3300009093\|Ga0105240_10519158	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1322	Open in IMG/M
3300009093\|Ga0105240_12351667	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	552	Open in IMG/M
3300009174\|Ga0105241_10638802	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	966	Open in IMG/M
3300009551\|Ga0105238_11459243	Not Available	712	Open in IMG/M
3300009551\|Ga0105238_12290523	Not Available	575	Open in IMG/M
3300010048\|Ga0126373_11499118	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	740	Open in IMG/M
3300010048\|Ga0126373_13032608	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	523	Open in IMG/M
3300010359\|Ga0126376_10261323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1480	Open in IMG/M
3300010371\|Ga0134125_10061527	All Organisms → cellular organisms → Bacteria	4179	Open in IMG/M
3300010371\|Ga0134125_10764510	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1064	Open in IMG/M
3300010371\|Ga0134125_11446065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	749	Open in IMG/M
3300010373\|Ga0134128_10004304	All Organisms → cellular organisms → Bacteria	17441	Open in IMG/M
3300010373\|Ga0134128_10070247	Not Available	4015	Open in IMG/M
3300010373\|Ga0134128_11703631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	694	Open in IMG/M
3300010396\|Ga0134126_11324094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	797	Open in IMG/M
3300010396\|Ga0134126_12904388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	519	Open in IMG/M
3300010398\|Ga0126383_13137075	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	540	Open in IMG/M
3300010399\|Ga0134127_13580675	Not Available	509	Open in IMG/M
3300012212\|Ga0150985_108827210	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	792	Open in IMG/M
3300012469\|Ga0150984_109954344	Not Available	1817	Open in IMG/M
3300012469\|Ga0150984_111416286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	512	Open in IMG/M
3300012469\|Ga0150984_114713756	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	835	Open in IMG/M
3300012469\|Ga0150984_115362574	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1093	Open in IMG/M
3300012924\|Ga0137413_11175224	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	610	Open in IMG/M
3300012929\|Ga0137404_10016516	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5239	Open in IMG/M
3300013100\|Ga0157373_10828618	Not Available	683	Open in IMG/M
3300013104\|Ga0157370_10075339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3181	Open in IMG/M
3300013296\|Ga0157374_10200210	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1955	Open in IMG/M
3300013296\|Ga0157374_10999646	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	856	Open in IMG/M
3300013296\|Ga0157374_12631664	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300013308\|Ga0157375_10697500	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1169	Open in IMG/M
3300014968\|Ga0157379_11765494	Not Available	607	Open in IMG/M
3300015374\|Ga0132255_104155775	Not Available	614	Open in IMG/M
3300019886\|Ga0193727_1100738	Not Available	852	Open in IMG/M
3300019886\|Ga0193727_1178558	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	548	Open in IMG/M
3300019890\|Ga0193728_1030425	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2685	Open in IMG/M
3300020021\|Ga0193726_1012020	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	4618	Open in IMG/M
3300020199\|Ga0179592_10328249	Not Available	676	Open in IMG/M
3300021560\|Ga0126371_10455079	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300021560\|Ga0126371_10901004	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1028	Open in IMG/M
3300025909\|Ga0207705_11487927	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	513	Open in IMG/M
3300025912\|Ga0207707_10059257	Not Available	3332	Open in IMG/M
3300025912\|Ga0207707_10110551	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2402	Open in IMG/M
3300025913\|Ga0207695_10027466	All Organisms → cellular organisms → Bacteria	6337	Open in IMG/M
3300025915\|Ga0207693_11001845	Not Available	638	Open in IMG/M
3300025917\|Ga0207660_10718017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	815	Open in IMG/M
3300025924\|Ga0207694_10019341	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5149	Open in IMG/M
3300025924\|Ga0207694_11305306	Not Available	614	Open in IMG/M
3300025924\|Ga0207694_11538852	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	561	Open in IMG/M
3300025929\|Ga0207664_10040836	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	3611	Open in IMG/M
3300025949\|Ga0207667_10069668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3661	Open in IMG/M
3300025981\|Ga0207640_11357664	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	636	Open in IMG/M
3300026116\|Ga0207674_11166491	Not Available	740	Open in IMG/M
3300026116\|Ga0207674_11206673	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	726	Open in IMG/M
3300027869\|Ga0209579_10011502	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	5355	Open in IMG/M
3300028536\|Ga0137415_10607853	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	904	Open in IMG/M
3300028563\|Ga0265319_1260840	Not Available	528	Open in IMG/M
3300028573\|Ga0265334_10010948	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	3827	Open in IMG/M
3300028800\|Ga0265338_10028094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	5622	Open in IMG/M
3300028800\|Ga0265338_10718317	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	689	Open in IMG/M
3300028800\|Ga0265338_10901914	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	602	Open in IMG/M
3300030521\|Ga0307511_10139322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1432	Open in IMG/M
3300031057\|Ga0170834_104460093	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	855	Open in IMG/M
3300031064\|Ga0102767_11064288	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	546	Open in IMG/M
3300031128\|Ga0170823_11175091	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	569	Open in IMG/M
3300031231\|Ga0170824_115089063	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	775	Open in IMG/M
3300031231\|Ga0170824_128875572	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	714	Open in IMG/M
3300031232\|Ga0302323_100239365	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1854	Open in IMG/M
3300031446\|Ga0170820_15951768	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	826	Open in IMG/M
3300031474\|Ga0170818_104643638	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	574	Open in IMG/M
3300031474\|Ga0170818_104687922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	560	Open in IMG/M
3300031708\|Ga0310686_119680393	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	685	Open in IMG/M
3300031726\|Ga0302321_100726664	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1116	Open in IMG/M
3300031754\|Ga0307475_10704485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	805	Open in IMG/M
3300031754\|Ga0307475_10796657	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	750	Open in IMG/M
3300031947\|Ga0310909_10878774	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	737	Open in IMG/M
3300031962\|Ga0307479_10366599	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1424	Open in IMG/M
3300032515\|Ga0348332_13260486	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	761	Open in IMG/M
3300032770\|Ga0335085_10001432	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	50843	Open in IMG/M
3300032893\|Ga0335069_12423080	Not Available	545	Open in IMG/M
3300033475\|Ga0310811_10012834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	10894	Open in IMG/M
3300033475\|Ga0310811_10321810	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1761	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.19%
Host-Associated	Host-Associated	39.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.19%
Plants	Host-Associated → Plants	38.83%
Human	Host-Associated → Human	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.74%
Peat	Environmental → Terrestrial → Peat	1.94%
Roots	Host-Associated → Plants → Roots	1.94%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.97%
Digestive System	Host-Associated → Human → Digestive System	0.97%
Rhizome	Host-Associated → Plants → Rhizome	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.50%
Loam	Environmental → Terrestrial → Soil → Loam	12.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.97%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.97%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	9.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.80%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.97%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.97%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028573	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031064	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 3C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1044854832	3300000364	Soil	MDHLMIVMAAGKTLIVSSDSRGKQVISCQKLVTRTGVQQPAARPKRQQLFLTVAGPLEK*
rootH1_100948152	3300003323	Sugarcane Root And Bulk Soil	MDHLMIVMAAGKSLIVSSDERGNQVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0063455_1008057181	3300004153	Soil	MIVMAAGKTLIVSSDSRGKQVISCQKLVTRTGVQQPAARPKRQQLFLT
Ga0058862_120661511	3300004803	Host-Associated	KKQFDRIGNRMDHLMIVMAAGKTLVVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0070680_1010110422	3300005336	Corn Rhizosphere	MDHLMIVMAAGKTLIVSSDSRGQEVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK*
Ga0070691_101690801	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MDHLMIVMAAGKSLIVSSNSRGNEIVGCKRLVTRTGVQQPATKPKRQQFFFTHAAPLEK*
Ga0070714_1000498702	3300005435	Agricultural Soil	MDHLMIVMAAGKSLVVSTDSRGNQVVGCNKLVTRTGVQQPATKPKRQQLFFTHAAPLEK*
Ga0070663_1021473021	3300005455	Corn Rhizosphere	MQESSGELFKKQFDRIGNRMDHLMIVMAAGKTLIVSSDARGTEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0070681_100243582	3300005458	Corn Rhizosphere	MSLRLLRGLVIVMKSSQELIKKQFDRIGNRMDHLMIVMAAGKTLIVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0070681_115852741	3300005458	Corn Rhizosphere	MDHLMIVTAAGKSLVVSSDERGNQIVGCKKLVTRTGVQQPATKPKRLQLYFTHATPLEK*
Ga0070681_118145632	3300005458	Corn Rhizosphere	MDHLMIVMAAGKSLIVSIDERGNQVVGCKKLVTRTGVQQPAT
Ga0070685_100377572	3300005466	Switchgrass Rhizosphere	MDHLMIVMAAGKTLIVSSDGRGTEIVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0070731_101365672	3300005538	Surface Soil	MDHLMIVMAAGKTLIVSSDSRGKQVVGCQKLVTRTGAQQAAARPKRQQLFLTHAGPTEK*
Ga0068855_1000450584	3300005563	Corn Rhizosphere	MDHLMIVMAAGKTLIVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0068855_1003207262	3300005563	Corn Rhizosphere	MQESSGELFKKQFDRIGNRMDHLMIVMAAGKTLIVSSDDRGTQVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0068854_1017187952	3300005578	Corn Rhizosphere	IGNRMDHLMIVMAAGKTLIVSSDGKGNEVVGCTKLVTRTGVQQPATKPKRQQLFFTHATPLEK*
Ga0066652_1002465902	3300006046	Soil	MIVMAAGKTLIVSSDSRGKQVVSCQKLVTRTGVQQPAARPKRQQLFLTVAGPLEK*
Ga0097621_1004936022	3300006237	Miscanthus Rhizosphere	MDHLMIVMAAGKSLVVSSDDRGTQIVGCKKLVTRTGVQQPATKPKRQQLYFTHATPTAK*
Ga0079222_118584681	3300006755	Agricultural Soil	EFVVLVTKKQFDRTGNRMDHLMIVMVAGKSLIVSTDSRGNHVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0079221_114695321	3300006804	Agricultural Soil	MDHLTIVMAAGKTLIVSINGRDNEVVGYKKLVTRTAVQQPTTKPKGQQL
Ga0105240_100579495	3300009093	Corn Rhizosphere	FARSCVLFLKKQIDRIGNRMDHLMIVMAAGKSLIVSSNSRGNEIVGCKRLVTRTGVQQPATKPKRQQFFFTHAAPLEK*
Ga0105240_105191582	3300009093	Corn Rhizosphere	MDHLMIVMAAGKTLIVSSDARGTEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0105240_123516672	3300009093	Corn Rhizosphere	KKQFDRIGNRMDHLMIVMAAGKTLIVSSDVRGTEDVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0105241_106388021	3300009174	Corn Rhizosphere	RNIRPSIVFQESSRELFKKQFDRIGNRMDHLMIVMAAGKTLIVSSDARGTEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0105238_114592432	3300009551	Corn Rhizosphere	MSLQVPQCLVIVLEDFWQKQFDRIGNRMDHLMIVMAAGKTLIVSSDGRGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0105238_122905231	3300009551	Corn Rhizosphere	MDHLMIVMAAGKTLIVSSDVRGTEVVGCKKLVTRTGVQQ
Ga0126373_114991182	3300010048	Tropical Forest Soil	MDHLTIVMAAGKTLIVSSDSRGKQIVGCQKLVTRTGVQQPVARPRRQQLFLTLAAPLEK*
Ga0126373_130326081	3300010048	Tropical Forest Soil	LRPIAPTDYSVKRKFDRIGNRMDHLMIVMAAGKTLIVSSDGRGKHVVGCQKLVTRTGALQVAARPKRQQLYLTHAGPHEK*
Ga0126376_102613232	3300010359	Tropical Forest Soil	MDHLMIVMAAGKTLIVSSDRRGKQVVGCQKLVTRTGAQQAAARPKRQQLYLTHAGPTEK*
Ga0134125_100615272	3300010371	Terrestrial Soil	MDHLTIVMAAGKTLIVSSDERGNAVVGCKKLVTRTGVQQPATRPKRQQLFFTHAAPLEK*
Ga0134125_107645102	3300010371	Terrestrial Soil	MDHLMIVMAAGKTLIVSSDAQGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0134125_114460652	3300010371	Terrestrial Soil	VMAAGKTLIVSSDSRGQEVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK*
Ga0134128_1000430415	3300010373	Terrestrial Soil	MDHLTIVMAAGKSLVVSGDSRGNQVVGCKKIVTRTGVQQPTTKPRRQQLFFTHAAPLEK*
Ga0134128_100702472	3300010373	Terrestrial Soil	MDHLMIVMAAGKTLVVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0134128_117036311	3300010373	Terrestrial Soil	QELLKKQFDRIGNRMDHLMIVMAAGKTLIVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0134126_113240941	3300010396	Terrestrial Soil	PQRRLVIVVAQSSQELFKKQFDRIGNRMDHLMIVMAAGKTLVVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0134126_129043882	3300010396	Terrestrial Soil	VQEEFVVLVTKKQFDRTGNRMDHLMIVMVAGKSLIVSTDSRGNHVVGCRKLVTRTGVQQPDIKPKRQQLFFTHAAPLEK*
Ga0126383_131370752	3300010398	Tropical Forest Soil	MDHLMIVMAAGKTLIVSSDSRGKQVVGCQKLVTRTGAQQAAARPKRQQLFFTHAGPQEK*
Ga0134127_135806751	3300010399	Terrestrial Soil	LQPQRRLVIVVAQSSQELFKKQFDRIGNRMDHLMIVMAAGKTLVVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0150985_1088272102	3300012212	Avena Fatua Rhizosphere	KKQFDRIGNRMDHLMIVMAAGKTLVVSSDDRGTEVVGCKKLVTRTAVQQPATKPKRQQLYFTHATPLEK*
Ga0150984_1099543442	3300012469	Avena Fatua Rhizosphere	MDHLMIVMAAGKTLVVSSDDRGTEVVGCKKLVTRTAVQQPATKPKRQQLYFTHATPLEK*
Ga0150984_1114162861	3300012469	Avena Fatua Rhizosphere	IGNRMDHLMIVMAAGKSLIVSSNERGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK*
Ga0150984_1147137561	3300012469	Avena Fatua Rhizosphere	KKQIDRTGNRMDHLMIVMAAGKSLIVSSDDRGNQVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK*
Ga0150984_1153625741	3300012469	Avena Fatua Rhizosphere	MDHLMIVMAAGKSLVVSSDDRGNQIVGCKKLVTRTGVQQPATKPKRQQLYFTHATPTAK*
Ga0137413_111752241	3300012924	Vadose Zone Soil	LIIVLEKKQIDRIGNRMDHLMIVIAAGKTLIVSSDSRGNQVVGCKKLVTRTGVQQPATKPKRLQLFFTHAAPLEK*
Ga0137404_100165162	3300012929	Vadose Zone Soil	MDHLMIVMAAGKTLIVSSDSRGNQVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK*
Ga0157373_108286182	3300013100	Corn Rhizosphere	MQESSGELFKKQFDRIGNRMDHLMIVMAAGKTLVVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0157370_100753393	3300013104	Corn Rhizosphere	MDHLMIVMVAGKSLIVSTDSRGNHVVGCRKLVTRTGVQQPDIKPKRQQLFFTHAAPLEK*
Ga0157374_102002103	3300013296	Miscanthus Rhizosphere	MQESSRELFKKQFDRIGNRMDHLMIVMAAGKTLIVSSDDRGTEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0157374_109996462	3300013296	Miscanthus Rhizosphere	MDHLMIVMAAGKTLIVSSDGRGTEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK*
Ga0157374_126316641	3300013296	Miscanthus Rhizosphere	MDHLMIVMAAGKSLVVSSDERGNQIVGCKKLVTRTGVQQQATRPKRQQLYFTHATPLEK*
Ga0157375_106975002	3300013308	Miscanthus Rhizosphere	SRELRKKQFDRIGNRMDHLMIVMAAGKTLIVSSDGRGTEIVGCKKLVTRTGVQQPATKPKRQQLYFTHATPL*
Ga0157379_117654941	3300014968	Switchgrass Rhizosphere	MDHLMIVMAAGKSLIVSSDDRGNQVVGCKKLVTRTGVQQ
Ga0132255_1041557752	3300015374	Arabidopsis Rhizosphere	MDHLMIVMAAGKSLVVSSDERGNQIVGCKKLVTRTGVQQPATRPKRQQLYFTHATPLEK*
Ga0193727_11007381	3300019886	Soil	MDHLMIVMAAGKTLIVSSDSRGNQVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK
Ga0193727_11785581	3300019886	Soil	MDHLMIVMAAGKSLIVSSDDRGNQVVGCKKLVTRTGVQQPATKPKRQQ
Ga0193728_10304252	3300019890	Soil	MCLKKQIDRIGNRMDHLMIVMAAGKTLIVSSDSRGNQVVGCRKLVTRTGVQQPATKPKRQQLYFTHAAPLEK
Ga0193726_10120202	3300020021	Soil	MDHLMIVMAAGKSLIVSSDDRGNQVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK
Ga0179592_103282492	3300020199	Vadose Zone Soil	MDHLMIVMAAGKTLIVSSDSRGNQVVGCKKLVTRTGVQQP
Ga0126371_104550792	3300021560	Tropical Forest Soil	MDHLTIVMAAGKTLIVSSDSRGKQIVGCQKLVTRTGVQQPVARPRRQQLFLTLAAPLEK
Ga0126371_109010042	3300021560	Tropical Forest Soil	MDHLIIVMAAGKSLVVSGDSRGNQVVGCKKLVTRTGVQQPATKPRRQQLFFTHAAPLEK
Ga0207705_114879271	3300025909	Corn Rhizosphere	DHLMIVMAAGKSLIVSSNSRGNEIVGCKRLVTRTGVQQPATKPKRQQFFFTHAAPLEK
Ga0207707_100592573	3300025912	Corn Rhizosphere	MDHLMIVMAAGKTLIVSSDSRGQEVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK
Ga0207707_101105513	3300025912	Corn Rhizosphere	MSLRLLRGLVIVMKSSQELIKKQFDRIGNRMDHLMIVMAAGKTLIVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK
Ga0207695_100274663	3300025913	Corn Rhizosphere	MDHLMIVMAAGKSLIVSSNSRGNEIVGCKRLVTRTGVQQPATKPKRQQFFFTHAAPLEK
Ga0207693_110018452	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDHLMIVMAAGKSLIVSSNSRGNEIVGCKKLVTRTGVQQPATKPKRQQFFFTHAAPLEK
Ga0207660_107180171	3300025917	Corn Rhizosphere	IPCRCVRTAGLSLSFESSQELLKKQFDRIGNRMDHLMIVMAAGKTLIVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK
Ga0207694_100193414	3300025924	Corn Rhizosphere	MQESSGELFKKQFDRIGNRMDHLMIVMAAGKTLIVSSDDRGTQVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK
Ga0207694_113053061	3300025924	Corn Rhizosphere	MSLQVPQCLVIVLEDFWQKQFDRIGNRMDHLMIVMAAGKTLIVSSDSRGIEVVGCKKLVTRTGVQQPATKPKRQQLYFTHA
Ga0207694_115388522	3300025924	Corn Rhizosphere	SLQSSQELLKKQFDRIGNRMDHLMIVMAAGKTLVVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK
Ga0207664_100408362	3300025929	Agricultural Soil	MDHLMIVMAAGKSLVVSTDSRGNQVVGCNKLVTRTGVQQPATKPKRQQLFFTHAAPLEK
Ga0207667_100696683	3300025949	Corn Rhizosphere	MDHLMIVMAAGKTLIVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK
Ga0207640_113576642	3300025981	Corn Rhizosphere	MDHLMIVMAAGKTLIVSSDGKGNEVVGCTKLVTRTGVQQPATKPKRQQLFFTHATPLEK
Ga0207674_111664911	3300026116	Corn Rhizosphere	MDHLMIVMAAGKTLIVSSDDRGTQVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK
Ga0207674_112066732	3300026116	Corn Rhizosphere	LKKQFDRIGNRMDHLMIVMAAGKTLVVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK
Ga0209579_100115022	3300027869	Surface Soil	MIVMAAGKTLIVSSDSRGKQVVGCQKLVTRTGAQQAAARPKRQQLFLTHAGPTEK
Ga0137415_106078532	3300028536	Vadose Zone Soil	LIIVLEKKQIDRIGNRMDHLMIVIAAGKTLIVSSDSRGNQVVGCKKLVTRTGVQQPATKPKRLQLFFTHAAPLEK
Ga0265319_12608402	3300028563	Rhizosphere	MDHLTIVMAAGKSLIVSNDERGIEVVGCKKLVTRTGVQQAATKPKRQQLYFTHAAPLEK
Ga0265334_100109483	3300028573	Rhizosphere	MDHLMIVMAAGKSLIISSDKRGVEVVGCKKLVTRTGVQQAATRPKRQLLYFTHAAPLEK
Ga0265338_100280942	3300028800	Rhizosphere	MDHLMIVMAAGKTLIVSSDSRGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHAAPLEK
Ga0265338_107183172	3300028800	Rhizosphere	MDHLNIVMAAGKSLIVSTDERGIEVVGCKKLVTRTGVQQAAAKPKR
Ga0265338_109019141	3300028800	Rhizosphere	QFDRIGNRMDHLTIVMAAGKSLIVSNDERGIEVVGCKKLVTRTGVQQAATKPKRQQLYFTHAAPLEK
Ga0307511_101393222	3300030521	Ectomycorrhiza	MCLKKQIDRTGNRMDHLMIVMAAGKTLIVSSDSRGNQVVGCRKLVTRTGVQQPATKPKRQQLYFTHAAPLEK
Ga0170834_1044600932	3300031057	Forest Soil	AAGKTFIVSSDSRGKQVVGCQKLVTRTGVQQAAARPKRQQLFLSLAGPLEK
Ga0102767_110642882	3300031064	Soil	DHLTIVMAAGKTLIISSDARGNEVVGCKKLVTRTGAQQQATKPKRQQLYFTHAAPLEK
Ga0170823_111750912	3300031128	Forest Soil	AGKTFIVSSDSRGKQVVGCQKLVTRTGVQQAAARPKRQQLFLSLAGPLEK
Ga0170824_1150890632	3300031231	Forest Soil	MDHLMIVMAAGKTLIVSSDGRGSQVVGCKKLVTRTGVQQPAAKPRRQQLFLTHAAPLEK
Ga0170824_1288755722	3300031231	Forest Soil	DHLMIVMAAGKTLIVSSDGRGKQVVGCQKLVTRTGAQQAAARPKRQQLFLTHAGPQEK
Ga0302323_1002393651	3300031232	Fen	KTLIVSSGRRGPEVIGCHKLATRTAVEQPTTRPKRQQLYFTHATPLEK
Ga0170820_159517681	3300031446	Forest Soil	MDHLMIVMAAGKSLVVSSDERGNQIVGCKKLVTRTGVQQPATKPKRLQLYFTHATPLEK
Ga0170818_1046436381	3300031474	Forest Soil	MDHLTIVMAAGKTLIISSDGRDNEVVGCKKLVTRTSAQQPATKPKRQQLYFTHAAPLEK
Ga0170818_1046879222	3300031474	Forest Soil	SQKQIDRTGNRMDHLMIVMAAGKSLVVSSDERGNQIVGCKKLVTRTGVQQPATKPKRLQLYFTHATPLEK
Ga0310686_1196803932	3300031708	Soil	MDHLIIVMAAGKTLIVSSGSRGQQVVGCQKLVTRTGAQQAAAWPKRQQLFLTHHAGPLEK
Ga0302321_1007266642	3300031726	Fen	MDHLTIVMAAGKTLIVSSGRRGPEVIGCHKLATRTAVEQPTTRPKRQQLYFTHATPLEK
Ga0307475_107044852	3300031754	Hardwood Forest Soil	RKFDRIANRMDHLMIVMAAGKTLIVSSDSRGSQVVGCHKLVTRTGVQQTAARPKRQQLFLTLAGPLEK
Ga0307475_107966572	3300031754	Hardwood Forest Soil	MDHLMIVMAAGKTLIVSSDGRGNEVVACKKLVTRTGVQQPATKPKRQQLFFTHAAPLEK
Ga0310909_108787741	3300031947	Soil	MDHLMIVMAAGKTLIVSSDRQGKRIVGCQKLATRTGVQQAAARPKRQQLFLTHAGPHEK
Ga0307479_103665992	3300031962	Hardwood Forest Soil	MDHLMIVMAAGKTLIVSSDSRGSQIVGCHKLVTRTGVQQTAARPKRQQLFLTLAGPLEK
Ga0348332_132604862	3300032515	Plant Litter	GNRMDHLIIVMAAGKTLIVSSGSRGQQVVGCQKLVTRTGAQQAAAWPKRQQLFLTHHAGPLEK
Ga0335085_100014325	3300032770	Soil	MDHLTIVMAAGKTLIVSSDERGKEVVGCKKLVTRTGVQQPATKPKRQQLFFTHAAPLEK
Ga0335069_124230802	3300032893	Soil	MDHLMIVMAAGKTLIVSSDGRGNQVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLKK
Ga0310811_100128344	3300033475	Soil	MKSSQELIKKQFDRIGNRMDHLMIVMAAGKTLIVSSDARGNEVVGCKKLVTRTGVQQPATKPKRQQLYFTHATPLEK
Ga0310811_103218102	3300033475	Soil	MDHLMIVMAAGKTLIVSSDERGQEVVGCKKLVTRTGVQQPVTKPKRQQLFFTHAAPLEK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099468

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences