Metagenome / Metatranscriptome Family F099465

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099465
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	55 residues
Representative Sequence	MRHLLFNLRHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG
Number of Associated Samples	85
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	65.05 %
% of genes from short scaffolds (< 2000 bps)	83.50 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.612 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (11.650 % of family members)
Environment Ontology (ENVO)	Unclassified (53.398 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.078 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.45% β-sheet: 0.00% Coil/Unstructured: 38.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00575	S1	42.72
PF00072	Response_reg	12.62
PF01553	Acyltransferase	1.94
PF13551	HTH_29	0.97
PF03061	4HBT	0.97
PF13751	DDE_Tnp_1_6	0.97
PF00144	Beta-lactamase	0.97
PF07885	Ion_trans_2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.97
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.97
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.61 %
Unclassified	root	N/A	20.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.61 %
Unclassified	root	N/A	20.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.61 %
Unclassified	root	N/A	20.39 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	55.34 %
Unclassified	root	N/A	20.39 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	55.34 %
Unclassified	root	N/A	20.39 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	55.34 %
Unclassified	root	N/A	20.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.39 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	11.65 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	4.85 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	3.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.39 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	11.65 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	4.85 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	3.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.39 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	11.65 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	4.85 %
unclassified Sphingobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales	3.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.39 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	11.65 %
Sphingobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	3.88 %
unclassified Chitinophagaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.39 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	11.65 %
Sphingobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	3.88 %
Chitinophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101454601	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	622	Open in IMG/M
3300000559\|F14TC_100141076	Not Available	656	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1002863	All Organisms → cellular organisms → Bacteria	2032	Open in IMG/M
3300002099\|JGI24808J26613_1000472	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	13083	Open in IMG/M
3300004157\|Ga0062590_100447470	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1079	Open in IMG/M
3300004479\|Ga0062595_102662283	Not Available	503	Open in IMG/M
3300005171\|Ga0066677_10296719	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	923	Open in IMG/M
3300005277\|Ga0065716_1000986	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	657	Open in IMG/M
3300005330\|Ga0070690_100002919	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9229	Open in IMG/M
3300005330\|Ga0070690_100242236	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300005332\|Ga0066388_103752767	Not Available	775	Open in IMG/M
3300005344\|Ga0070661_100445176	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1030	Open in IMG/M
3300005353\|Ga0070669_101681480	Not Available	553	Open in IMG/M
3300005355\|Ga0070671_100958731	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	748	Open in IMG/M
3300005450\|Ga0066682_10565991	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	718	Open in IMG/M
3300005466\|Ga0070685_10069820	All Organisms → cellular organisms → Bacteria	2079	Open in IMG/M
3300005540\|Ga0066697_10115698	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300005544\|Ga0070686_100191749	All Organisms → cellular organisms → Bacteria	1459	Open in IMG/M
3300005544\|Ga0070686_100505182	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	939	Open in IMG/M
3300005564\|Ga0070664_100626491	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	999	Open in IMG/M
3300005564\|Ga0070664_100964646	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	801	Open in IMG/M
3300005564\|Ga0070664_101518840	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	634	Open in IMG/M
3300005564\|Ga0070664_102003184	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	549	Open in IMG/M
3300005616\|Ga0068852_100797978	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300005719\|Ga0068861_101468433	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	668	Open in IMG/M
3300005841\|Ga0068863_100285548	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300005843\|Ga0068860_102256694	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	565	Open in IMG/M
3300006046\|Ga0066652_100253792	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300006046\|Ga0066652_101579196	Not Available	604	Open in IMG/M
3300006237\|Ga0097621_100889885	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	829	Open in IMG/M
3300006237\|Ga0097621_101404315	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	661	Open in IMG/M
3300006791\|Ga0066653_10174920	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300006791\|Ga0066653_10727414	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	515	Open in IMG/M
3300006854\|Ga0075425_102449985	Not Available	578	Open in IMG/M
3300006871\|Ga0075434_100042553	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	4503	Open in IMG/M
3300009137\|Ga0066709_100217390	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2527	Open in IMG/M
3300010043\|Ga0126380_11501312	Not Available	597	Open in IMG/M
3300010048\|Ga0126373_10224377	Not Available	1835	Open in IMG/M
3300010322\|Ga0134084_10428912	Not Available	522	Open in IMG/M
3300010359\|Ga0126376_13207339	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	506	Open in IMG/M
3300010360\|Ga0126372_11098991	Not Available	813	Open in IMG/M
3300010375\|Ga0105239_10988547	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	967	Open in IMG/M
3300010375\|Ga0105239_12326412	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	624	Open in IMG/M
3300010376\|Ga0126381_104527090	Not Available	536	Open in IMG/M
3300010401\|Ga0134121_10184694	All Organisms → cellular organisms → Bacteria	1796	Open in IMG/M
3300011332\|Ga0126317_10746721	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1258	Open in IMG/M
3300011444\|Ga0137463_1000522	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	13057	Open in IMG/M
3300012212\|Ga0150985_102287803	All Organisms → cellular organisms → Bacteria	1948	Open in IMG/M
3300012212\|Ga0150985_109882082	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300012350\|Ga0137372_10030347	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	4959	Open in IMG/M
3300012354\|Ga0137366_10870241	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	636	Open in IMG/M
3300012355\|Ga0137369_10236136	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300012469\|Ga0150984_102186196	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	532	Open in IMG/M
3300012469\|Ga0150984_110325018	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300012469\|Ga0150984_119662077	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	885	Open in IMG/M
3300012484\|Ga0157333_1021260	Not Available	580	Open in IMG/M
3300012948\|Ga0126375_12025536	Not Available	509	Open in IMG/M
3300012957\|Ga0164303_11253728	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	546	Open in IMG/M
3300012960\|Ga0164301_10943196	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	673	Open in IMG/M
3300012989\|Ga0164305_10429381	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300013102\|Ga0157371_10483716	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	913	Open in IMG/M
3300013306\|Ga0163162_12617983	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	580	Open in IMG/M
3300013307\|Ga0157372_10206555	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2276	Open in IMG/M
3300015371\|Ga0132258_10498797	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	3044	Open in IMG/M
3300015373\|Ga0132257_100132333	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2907	Open in IMG/M
3300015374\|Ga0132255_103302885	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	687	Open in IMG/M
3300018078\|Ga0184612_10512876	Not Available	583	Open in IMG/M
3300018482\|Ga0066669_10319968	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1271	Open in IMG/M
3300018482\|Ga0066669_11600836	Not Available	595	Open in IMG/M
3300020012\|Ga0193732_1013128	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300021445\|Ga0182009_10201785	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	968	Open in IMG/M
3300021560\|Ga0126371_13391639	Not Available	538	Open in IMG/M
3300024055\|Ga0247794_10007537	All Organisms → cellular organisms → Bacteria	2434	Open in IMG/M
3300025893\|Ga0207682_10602579	Not Available	518	Open in IMG/M
3300025903\|Ga0207680_10525273	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	844	Open in IMG/M
3300025904\|Ga0207647_10110479	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300025908\|Ga0207643_10523629	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	759	Open in IMG/M
3300025919\|Ga0207657_10044756	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3889	Open in IMG/M
3300025920\|Ga0207649_10982764	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	664	Open in IMG/M
3300025920\|Ga0207649_11492641	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	535	Open in IMG/M
3300025923\|Ga0207681_11167108	Not Available	647	Open in IMG/M
3300025931\|Ga0207644_10114260	All Organisms → cellular organisms → Bacteria	2045	Open in IMG/M
3300025931\|Ga0207644_10988071	Not Available	706	Open in IMG/M
3300025932\|Ga0207690_11274963	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	614	Open in IMG/M
3300025933\|Ga0207706_10336345	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300025933\|Ga0207706_11676242	Not Available	513	Open in IMG/M
3300025938\|Ga0207704_10127136	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300025944\|Ga0207661_11062736	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	745	Open in IMG/M
3300025945\|Ga0207679_11579697	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	601	Open in IMG/M
3300025981\|Ga0207640_10136593	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300025986\|Ga0207658_10078823	All Organisms → cellular organisms → Bacteria	2518	Open in IMG/M
3300026023\|Ga0207677_10079853	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2341	Open in IMG/M
3300026023\|Ga0207677_10960499	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	773	Open in IMG/M
3300026041\|Ga0207639_10279566	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300026078\|Ga0207702_11965525	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	576	Open in IMG/M
3300026088\|Ga0207641_10546413	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1129	Open in IMG/M
3300026088\|Ga0207641_12330919	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	535	Open in IMG/M
3300026116\|Ga0207674_10056382	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3991	Open in IMG/M
3300026118\|Ga0207675_101568624	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	679	Open in IMG/M
3300026121\|Ga0207683_11002642	Not Available	775	Open in IMG/M
3300031716\|Ga0310813_12003028	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	546	Open in IMG/M
3300031740\|Ga0307468_100155427	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300033004\|Ga0335084_10977497	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	854	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.40%
Environmental	Environmental	46.60%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	53.40%
Terrestrial	Environmental → Terrestrial	43.69%
Aquatic	Environmental → Aquatic	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.30%
Sediment	Environmental → Aquatic → Sediment	1.94%
Roots	Host-Associated → Plants → Roots	1.94%
Freshwater	Environmental → Aquatic → Freshwater	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.01%
Soil	Host-Associated → Plants → Rhizosphere → Soil	22.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.50%
Loam	Environmental → Terrestrial → Soil → Loam	9.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	22.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	11.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.97%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012484	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1014546012	3300000364	Soil	TVHTSFMRHLLFNLRNKAETIFQNNLATRDRPLGFQIVVATLFAVDVLAFIAFCVIKIVSA*
F14TC_1001410762	3300000559	Soil	MKHLIYTLRHKADFILQNNTATKGRPLGFQIAVVTLFAIDVIAFIAFCIIKMISQ*
KanNP_Total_noBrdU_T14TCDRAFT_10028632	3300000596	Soil	MKHILYNLRLRADLILRNNTATKDRPLGFQIAVVTLFTVDVIAFITFFILKIASQ*
JGI24808J26613_10004728	3300002099	Soil	MKQFIYTLRHKAVLILQNNTATKGRPLGFQIAVITLFTIDVVAFITFCIIKMISQ*
Ga0062590_1004474701	3300004157	Soil	MRHLLFNLRNKAETILQNNLATRDRPLGFQIVVATLFAVDVLAFIAFCIIKIVSG*
Ga0062595_1026622831	3300004479	Soil	MRHLLFNLKHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKMVSG*
Ga0066677_102967191	3300005171	Soil	MFSLNGPIMKNFLCSLRDKADFLLENNTATKGRPLGFQIVVATLFAIDVVAFIAFCIIKIISQ*
Ga0065716_10009863	3300005277	Arabidopsis Rhizosphere	MRHLLFNLRHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG*
Ga0070690_1000029198	3300005330	Switchgrass Rhizosphere	MRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA*
Ga0070690_1002422362	3300005330	Switchgrass Rhizosphere	MRHLLFNLRTKAETIFQNSLATRDRPLGFQIAVATLFAIDVLAFIAFCIIKIVSG*
Ga0066388_1037527671	3300005332	Tropical Forest Soil	MKNLLYTVRHKADFIFQNNTATKGRPLGFQIAVATIFTIDVVAFITFCIIKIVSQ*
Ga0070661_1004451762	3300005344	Corn Rhizosphere	LTGLKIERKTVHTSFMRHLLFNLRTKAETIFQNSLATRDRPLGFQIAVATLFAIDVLAFIAFCIIKIVSG*
Ga0070669_1016814802	3300005353	Switchgrass Rhizosphere	MRHLLFNLRNKAETIFQNNLATRDRPLGFQILVAALFAVDLLAFIAFC
Ga0070671_1009587311	3300005355	Switchgrass Rhizosphere	MRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSA*
Ga0066682_105659911	3300005450	Soil	TLRHKADSILENNTATKGRPLGFQIAVITLFTVDVVAFITFCIIKIISQ*
Ga0070685_100698201	3300005466	Switchgrass Rhizosphere	MRHLLFNLKHKAETIFQNNLATRDRPRGFQIAVATLFAVDVLAFIAFCIIKMVSG*
Ga0066697_101156982	3300005540	Soil	MKHLLYTLRHKADSILENNTATKGRPLGFQIAVITIFTVDVVAFITFCIIKIISQ*
Ga0070686_1001917491	3300005544	Switchgrass Rhizosphere	FMRHLLFNLRTKAETIFQNSLATRDRPLGFQIAVATLFAIDVLAFIAFCIIKIVSG*
Ga0070686_1005051821	3300005544	Switchgrass Rhizosphere	RHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA*
Ga0070664_1006264912	3300005564	Corn Rhizosphere	TGLKIERKTVHTSFMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSA*
Ga0070664_1009646461	3300005564	Corn Rhizosphere	MVVICRLTGLKIERKTVHTFFMRHLLFNLRHRAETIFQSNLATRDRPLGFQIAVATLFAIDVLAFIAFCIIKIVSA*
Ga0070664_1015188402	3300005564	Corn Rhizosphere	TGLKIERKTVHTSSMRHLLFNLRNKAETILQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG*
Ga0070664_1020031841	3300005564	Corn Rhizosphere	FNLRHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG*
Ga0068852_1007979781	3300005616	Corn Rhizosphere	TIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG*
Ga0068861_1014684332	3300005719	Switchgrass Rhizosphere	ETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA*
Ga0068863_1002855481	3300005841	Switchgrass Rhizosphere	FMRHLLFNLRHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG*
Ga0068860_1022566942	3300005843	Switchgrass Rhizosphere	INGLKIERKTVHTSFMRHLLFNLRTKAETIFQNSLATRDRPLGFQIAVATLFAIDVLAFIAFCIIKIVSG*
Ga0066652_1002537921	3300006046	Soil	ALRHKADLLFQNSTATRDRPLRFQIVVAAIFTIDLVAFISFCLIKIISG*
Ga0066652_1015791962	3300006046	Soil	MRTIFFNLRHKAEVIFQNNTATKDRPLGFQIIVAALFTIDVVAFIAFCIIKIISG*
Ga0097621_1008898852	3300006237	Miscanthus Rhizosphere	SSMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA*
Ga0097621_1014043151	3300006237	Miscanthus Rhizosphere	LTGLKIERKTVHTSVHETFAFNLKHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG*
Ga0066653_101749202	3300006791	Soil	FDSTFFMKNLLYALRNKADFNLQNYTATKDRPLGFQIAVATIFTIDVAAFITFCIIKFVSQ*
Ga0066653_107274142	3300006791	Soil	AETIFQNNLATRDRPLGFQIVVATLFAVDVLAFIAFCIMKIVSG*
Ga0075425_1024499852	3300006854	Populus Rhizosphere	SAMKNLLYALGHKADFILKNNTATKGRPLGFQIAVATIFTIDVVAFITFCIIKIVSQ*
Ga0075434_1000425534	3300006871	Populus Rhizosphere	MKQFIYTLRHKADFILQNNTATKGRPLGFQIAVITLFTIDVIAFIAFCIIKIISQ*
Ga0066709_1002173901	3300009137	Grasslands Soil	MKHLLYTLRHKADSILENNTATKGRPLGFQIAVITIFTVDVVAFIT
Ga0126380_115013121	3300010043	Tropical Forest Soil	FVQLCSMKNLLHELRQKADLILQNTTATKGRPLLFQILVATIFAIDVVAFITFCIIKIVSQ*
Ga0126373_102243772	3300010048	Tropical Forest Soil	MKNLLFTLRHKAETILQNNTATKGRPLGFQIVVAAIFAIDVIAFIAFCIIKIISVG*
Ga0134084_104289121	3300010322	Grasslands Soil	MRSIFFNLRHKAEVIFQNNTATKDRPLGFQIIVAALFAIDVVAFIAFCIIKIISG*
Ga0126376_132073391	3300010359	Tropical Forest Soil	NKAETIFQNNLATGDRPLGFQIAVATFFAVDVLAFIAFCIIKIVSG*
Ga0126372_110989913	3300010360	Tropical Forest Soil	MKSLIYTLRHKADFILQNNTATKGRPLGFLIAVATIFAIDVVAFIIFCIIKIVSQ*
Ga0105239_109885472	3300010375	Corn Rhizosphere	MRYLLFNLRHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG*
Ga0105239_123264121	3300010375	Corn Rhizosphere	SSMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSG*
Ga0126381_1045270901	3300010376	Tropical Forest Soil	MKNLLFTLRHKAEAILQNNTATKGSPLGFQIVVAAIFAIDVIAFIAFCIIKIISVG*
Ga0134121_101846941	3300010401	Terrestrial Soil	MRHLLFNLRNKAETIFQKNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA*
Ga0126317_107467211	3300011332	Soil	HLFFNLRTKAEVILQNNIATKDRPLGFQIIVAALFTVDVLAFITFCIMKIVSG*
Ga0137463_10005222	3300011444	Soil	MKHLFYNLRDRADFILQNNTATKGRPLGFQIAVATLFTIDVVAFIAFCIIKIISQ*
Ga0150985_1022878032	3300012212	Avena Fatua Rhizosphere	LPILRHLLFSLRNKAETILQNNLATRDRPLGFQIVVATLFAVDVLAFIAFCIIKIVSG*
Ga0150985_1098820822	3300012212	Avena Fatua Rhizosphere	FMRHLLFNLKNKAETIFQNNLATRDRPFGFQIAVATLFAVDLLAFIAFCIMKIISG*
Ga0137372_100303472	3300012350	Vadose Zone Soil	MKQLIYTLRHKADFILQNNTATKGRPLGFQIAVITLFTIDVIAFIAFCIIKIISQ*
Ga0137366_108702412	3300012354	Vadose Zone Soil	IYTLRHKADFILQNNTATKGRPLGFQIAVITLFTIDVIAFIAFCIIKIISQ*
Ga0137369_102361361	3300012355	Vadose Zone Soil	KAEMIFQNNTATKDRPLGCQIIVATLFTIDVVAFIAFCIIKIISG*
Ga0150984_1021861962	3300012469	Avena Fatua Rhizosphere	VLFNLRNKAETIFQNNLATRDRPLGFQIVVATLFAVDVLAFIAFCIMKIVSG*
Ga0150984_1103250182	3300012469	Avena Fatua Rhizosphere	FMRHLLFNLKNKAETIFQNNLATRDRPFGFQIAVATLFAVDVLAFIAFCIMKIISG*
Ga0150984_1196620771	3300012469	Avena Fatua Rhizosphere	MRHLLFNLKNKAETIFQNNLATRDRPFGFQIAVATLFAVDVLAFIAFCIMKIVSG*
Ga0157333_10212601	3300012484	Soil	MRHLLFNLRNKAETILQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIV
Ga0126375_120255362	3300012948	Tropical Forest Soil	MKTLLDTIRHKADFILQNTTATKGRPLGFQIAVATILTIDVVAFITFSVIKIISQ*
Ga0164303_112537282	3300012957	Soil	KAETIFQNNLATRDRPLGFQIEVATIFAVDVLAFIALCIIKIVSG*
Ga0164301_109431962	3300012960	Soil	MRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSG*
Ga0164305_104293812	3300012989	Soil	FNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA*
Ga0157371_104837161	3300013102	Corn Rhizosphere	ETIFQNNLATRDRPLGFQIVVATLFAVDVLAFIAFCIIKIVSA*
Ga0163162_126179831	3300013306	Switchgrass Rhizosphere	LSILPFMRHLLFNLKHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKMVSG*
Ga0157372_102065551	3300013307	Corn Rhizosphere	RHLLFNLRNKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSA*
Ga0132258_104987971	3300015371	Arabidopsis Rhizosphere	MRHLLFNLRNKAETILQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG*
Ga0132257_1001323331	3300015373	Arabidopsis Rhizosphere	MKRILDNLKHTADLILQNNTATRGRPLGFQIAVVTLFTVDVIAFITFFILKLTSQ*
Ga0132255_1033028852	3300015374	Arabidopsis Rhizosphere	SMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA*
Ga0184612_105128761	3300018078	Groundwater Sediment	MKHLIYNLRHKADFILQDNTATRGRPLGFQIAVATLFAIDVVAFIAFCIIKIIYQ
Ga0066669_103199681	3300018482	Grasslands Soil	MKHLLCTLRHKADSILENNTATKGRPLGFQIAVITLFTVDVVAFIT
Ga0066669_116008362	3300018482	Grasslands Soil	MKHLLFDLRQKAELILQNNTATKGRPLGFQIVVATLFTIDVVAFIAFCIIKIISQ
Ga0193732_10131282	3300020012	Soil	MRSIFFNLRHKAEVIFQNNTATKDRPLGFQIIVAALFTIDLVAFVAFCIIKIISG
Ga0182009_102017852	3300021445	Soil	MRHLLFNLKHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKMVSG
Ga0126371_133916391	3300021560	Tropical Forest Soil	MKNMLFTLRHKAETILRNNTATRDRPLGFQIAVAAIFAIDVIAFIAFCIIKIVSV
Ga0247794_100075371	3300024055	Soil	FQNNLATRDRPLGFQIAVAALFAVDVLAFIAFCIIKIVSG
Ga0207682_106025792	3300025893	Miscanthus Rhizosphere	MRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA
Ga0207680_105252731	3300025903	Switchgrass Rhizosphere	PFMRHLLFNLRHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG
Ga0207647_101104792	3300025904	Corn Rhizosphere	MRHLLFNLRHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG
Ga0207643_105236292	3300025908	Miscanthus Rhizosphere	SSMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA
Ga0207657_100447562	3300025919	Corn Rhizosphere	MGHLLFNLKHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG
Ga0207649_109827642	3300025920	Corn Rhizosphere	KIERKTVHTFFMRHLLFNLRHRAETIFQSNLATRDRPLGFQIAVATLFAIDVLAFIAFCIIKIVSA
Ga0207649_114926411	3300025920	Corn Rhizosphere	MRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAF
Ga0207681_111671081	3300025923	Switchgrass Rhizosphere	MRHLLFNLKHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG
Ga0207644_101142602	3300025931	Switchgrass Rhizosphere	LTGPKIERKTVHTSSMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSA
Ga0207644_109880711	3300025931	Switchgrass Rhizosphere	MVVICRLTGLKIERKTVHTFFMRHLLFNLRHRAETIFQSNLATRDRPLGFQIAVATLFAIDVLAFIAFCIIKIVSA
Ga0207690_112749632	3300025932	Corn Rhizosphere	PKIERKTVHTSSMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSG
Ga0207706_103363451	3300025933	Corn Rhizosphere	NLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG
Ga0207706_116762421	3300025933	Corn Rhizosphere	MRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIV
Ga0207704_101271362	3300025938	Miscanthus Rhizosphere	CVTGWLTGLKIERKTVHTSFMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSA
Ga0207661_110627362	3300025944	Corn Rhizosphere	LTGLKIERKTVHTSSMRHLLFNLRNKAETILQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG
Ga0207679_115796971	3300025945	Corn Rhizosphere	WLTGLKIERKTVHTSFMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSA
Ga0207640_101365932	3300025981	Corn Rhizosphere	FMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAALFAVDVLAFIAFCIIKIVSG
Ga0207658_100788233	3300025986	Switchgrass Rhizosphere	KKLSILPFMRHLLFNLRHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG
Ga0207677_100798535	3300026023	Miscanthus Rhizosphere	MRHLLFNLKHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKMVS
Ga0207677_109604991	3300026023	Miscanthus Rhizosphere	TVHTSSMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVS
Ga0207639_102795662	3300026041	Corn Rhizosphere	QNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA
Ga0207702_119655251	3300026078	Corn Rhizosphere	SDWLTGLKIERKTVHTSFMRHLLFNLRNKAETIFQNNLATRDRPLGFQIAVAALFAVDVLAFIAFCIIKIVSG
Ga0207641_105464133	3300026088	Switchgrass Rhizosphere	MRHLLFNLRHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCI
Ga0207641_123309191	3300026088	Switchgrass Rhizosphere	QNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKIVSG
Ga0207674_100563821	3300026116	Corn Rhizosphere	LFNLKHKAETIFQNNLATRDRPLGFQIAVATLFAVDVLAFIAFCIIKMVSG
Ga0207675_1015686242	3300026118	Switchgrass Rhizosphere	RNKAETIFQNNLATRDRPLGFQIAVAAFFAVDVLAFIAFCIIKIVSA
Ga0207683_110026421	3300026121	Miscanthus Rhizosphere	SFMRHLLFNLRTKAETIFQNSLATRDRPLGFQIAVATLFAIDVLAFIAFCIIKIVSG
Ga0310813_120030281	3300031716	Soil	LRTKAETIFQNSLATRDRPLGFQIAVATLFAIDVLAFIAFCIIKIVSG
Ga0307468_1001554272	3300031740	Hardwood Forest Soil	NLATRDRPFGFQIVVATLFAVDVLAFIAFCIIKIASG
Ga0335084_109774971	3300033004	Soil	RHKADLILQNSTATRGRPPRFQIVVAAIFAIDVIAFISFCVMKLISG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099465

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences