Metagenome / Metatranscriptome Family F099405

Basic Information
Family ID	F099405
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	69 residues
Representative Sequence	AKRIVTEDGEVKVVEMKMRGRKTGESDEDYDDELFKFEPDYKPKGGSSIGWDTDTDGLGGADD
Number of Associated Samples	91
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.17 %
% of genes from short scaffolds (< 2000 bps)	83.50 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (64.078 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (19.417 % of family members)
Environment Ontology (ENVO)	Unclassified (66.019 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (92.233 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106. 1DelMOWin2010_100273771 2OpTDRAFT_101014171 3NpDRAFT_101030391 4Ga0055584_1004544403 5Ga0055584_1006876532 6Ga0065861_11027662 7Ga0099954_10057491 8Ga0075476_103535481 9Ga0075481_100612803 10Ga0075475_101542451 11Ga0066372_107189191 12Ga0099849_12448622 13Ga0099850_12231341 14Ga0075480_102515911 15Ga0102957_10422631 16Ga0102814_106096731 17Ga0114998_106447151 18Ga0098043_12246321 19Ga0129351_12882932 20Ga0136656_11667711 21Ga0129353_14673522 22Ga0163110_103115051 23Ga0163110_116230821 24Ga0163109_100125927 25Ga0163109_101140144 26Ga0163179_104461121 27Ga0163179_116658191 28Ga0181369_10558641 29Ga0181387_10273611 30Ga0181387_10368121 31Ga0181387_10989332 32Ga0181390_11164481 33Ga0181373_10489602 34Ga0181388_10290731 35Ga0181419_10631251 36Ga0181419_11295731 37Ga0181426_10829471 38Ga0181431_10468301 39Ga0181431_10980202 40Ga0181421_11751112 41Ga0181389_10538073 42Ga0181392_11494652 43Ga0181405_11259432 44Ga0187219_11049931 45Ga0181408_10673693 46Ga0181385_10556351 47Ga0181406_10937232 48Ga0181395_12141981 49Ga0181379_12207861 50Ga0181607_104210861 51Ga0181585_101367234 52Ga0181585_102663683 53Ga0181592_101443011 54Ga0181592_102049121 55Ga0181568_102745994 56Ga0181564_107349851 57Ga0206124_101168412 58Ga0211636_103694111 59Ga0211659_100030491 60Ga0211472_102179721 61Ga0211653_103871651 62Ga0211565_102099281 63Ga0211539_101240073 64Ga0211559_101728691 65Ga0211640_107418582 66Ga0211577_103126931 67Ga0211577_107688872 68Ga0211614_103157821 69Ga0206677_100470634 70Ga0206682_101081353 71Ga0206123_101970372 72Ga0213869_100350055 73Ga0213866_102867221 74Ga0222717_102100053 75Ga0222716_102361683 76Ga0255770_100535031 77Ga0255760_104106202 78Ga0255751_102623082 79Ga0255761_101611233 80Ga0233438_103303682 81Ga0233437_11782872 82Ga0233451_100560471 83Ga0244776_107431642 84Ga0208666_10530103 85Ga0209232_12021442 86Ga0208162_11524851 87Ga0208019_11679981 88Ga0208547_12068002 89Ga0209630_104837142 90Ga0209192_1000248313 91Ga0209192_102745061 92Ga0208671_102330522 93Ga0209090_100099977 94Ga0228674_12793481 95Ga0233450_101466783 96Ga0233401_10803062 97Ga0257106_11400731 98Ga0257110_10260034 99Ga0307488_101165513 100Ga0315320_102411954 101Ga0315330_108048401 102Ga0315321_103873853 103Ga0315334_110769602
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106. 1DelMOWin2010_100273771 2Ga0099954_10057491 3Ga0075476_103535481 4Ga0066372_107189191 5Ga0099850_12231341 6Ga0075480_102515911 7Ga0163110_103115051 8Ga0163110_116230821 9Ga0163109_100125927 10Ga0163179_116658191 11Ga0181387_10273611 12Ga0181387_10368121 13Ga0181390_11164481 14Ga0181607_104210861 15Ga0181592_101443011 16Ga0211565_102099281 17Ga0211559_101728691 18Ga0244776_107431642 19Ga0209192_102745061
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0233451_100560471 2Ga0066372_107189191 3Ga0099850_12231341 4Ga0075480_102515911 5Ga0102814_106096731 6Ga0098043_12246321 7Ga0163110_103115051 8Ga0163109_100125927 9Ga0181405_11259432 10Ga0181408_10673693 11Ga0181385_10556351 12Ga0181379_12207861 13Ga0181585_101367234 14Ga0181568_102745994 15Ga0206124_101168412 16Ga0211636_103694111 17Ga0211653_103871651 18Ga0211559_101728691 19Ga0211640_107418582 20Ga0211577_103126931
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 8.79% Coil/Unstructured: 91.21%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF03102	NeuB	39.81
PF13186	SPASM	4.85
PF08003	Methyltransf_9	1.94
PF03721	UDPG_MGDP_dh_N	0.97
PF13489	Methyltransf_23	0.97
PF04055	Radical_SAM	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2089	Sialic acid synthase SpsE, contains C-terminal SAF domain	Cell wall/membrane/envelope biogenesis [M]	39.81
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.97
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.97
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	35.92 %
Unclassified	root	N/A	64.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	26.21 %
Unclassified	root	N/A	64.08 %
Viruses	superkingdom	All Organisms → Viruses	9.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.71 %
Unclassified	root	N/A	64.08 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.94 %
Unclassified	root	N/A	64.08 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.39 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.94 %
Unclassified	root	N/A	64.08 %

Name	Rank	Taxonomy	Distribution
Bdellovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.71 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	20.39 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.94 %
Unclassified	root	N/A	64.08 %

Name	Rank	Taxonomy	Distribution
Bdellovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	20.39 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.94 %
Unclassified	root	N/A	64.08 %

Name	Rank	Taxonomy	Distribution
Bdellovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio	0.97 %
Candidatus Endolissoclinum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum	20.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.94 %
Unclassified	root	N/A	64.08 %

Name	Rank	Taxonomy	Distribution
Bdellovibrio exovorus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → Bdellovibrio exovorus	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.94 %
Unclassified	root	N/A	64.08 %
unclassified Candidatus Endolissoclinum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum	20.39 %

Name	Rank	Taxonomy	Distribution
Bdellovibrio exovorus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → Bdellovibrio exovorus	0.97 %
Candidatus Endolissoclinum sp. TMED37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	20.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.94 %
Unclassified	root	N/A	64.08 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300024255\|Ga0233438_10330368	Not Available	575	Open in IMG/M
(restricted) 3300024259\|Ga0233437_1178287	Not Available	931	Open in IMG/M
3300000117\|DelMOWin2010_c10027377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	2843	Open in IMG/M
3300000928\|OpTDRAFT_10101417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	2138	Open in IMG/M
3300000929\|NpDRAFT_10103039	All Organisms → Viruses → Predicted Viral	1354	Open in IMG/M
3300004097\|Ga0055584_100454440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1330	Open in IMG/M
3300004097\|Ga0055584_100687653	Not Available	1069	Open in IMG/M
3300004448\|Ga0065861_1102766	Not Available	922	Open in IMG/M
3300006350\|Ga0099954_1005749	Not Available	583	Open in IMG/M
3300006867\|Ga0075476_10353548	Not Available	508	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.03%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.97%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	17.48%
Inlet	Environmental → Aquatic → Marine → Inlet	1.94%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	21.36%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	5.83%
Oceanic	Environmental → Aquatic → Marine → Oceanic	18.45%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.94%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.97%
Strait	Environmental → Aquatic → Marine → Strait	19.42%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.62%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.91%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	4.85%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	12.62%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	19.42%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	17.48%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	13.59%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.62%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	9.71%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.91%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.94%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	1.94%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.94%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	10.68%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	9.71%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.97%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.97%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.97%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.91%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.97%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.97%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	12.62%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	19.42%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	5.83%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.88%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.94%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.94%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.94%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	3.88%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental	Open in IMG/M
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300006350	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_100273771	3300000117	Marine	HGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSELFEFEPDYKPKGGSSIGWDTDTDGLGGADD*
OpTDRAFT_101014171	3300000928	Freshwater And Marine	TEDGEVKVVEMKMRGRKTGESDEDYDSDLFAFEPDYKPKTGSSIGWDTETDGLGGADD*
NpDRAFT_101030391	3300000929	Freshwater And Marine	IQAPKTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDDGDLFEFEPDFKPKTGSSIGWDTETDGLGGADD*
Ga0055584_1004544403	3300004097	Pelagic Marine	EDIQAPKTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSELFEFEPDYKPKSGSSIGWDTDSDGLGGADD*
Ga0055584_1006876532	3300004097	Pelagic Marine	HGVTDSLYAKRIVTEDGEVKVVEMKMRGRQTGESDEDYDDTLFQFEPDYKPKGGSSIGWDTDTDGLGGAND*
Ga0065861_11027662	3300004448	Marine	DSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSDLFAFEPDYKPKPGSGSSIGWDTETDGLGGAND*
Ga0099954_10057491	3300006350	Marine	LYAKRVVTEDGEVKVVEMKMRNRKTGESEDDYDDEKYAEDEKINKAGSSIGWDTETDGLGGAIDD*
Ga0075476_103535481	3300006867	Aqueous	EDGEVKVVEMKVRGRQTGESQDDYDDEKYSDDEVKNKRVGSSIGWDPDTDGLGGVAVDD*
Ga0075481_100612803	3300006868	Aqueous	TEDGEVKVVEMKMRGRKTGESDEDYDDELFKFEPDYKPKGGSSIGWDTDTDGLGGADD*
Ga0075475_101542451	3300006874	Aqueous	KVVEMKVRGRQTGESQDDYDDEKYSDDEVKNKRVGSSIGWDPDTDGLGGVAVDD*
Ga0066372_107189191	3300006902	Marine	SVGVTNTLYAKRIVTEDGEVKVVEMKVRGRQTGESDDDYDDIKYENEIEGINPNIKKRAGSSIGWDTDTDGLGGAVDE*
Ga0099849_12448622	3300007539	Aqueous	LYAKRIVTEDGEVKVVEVKMRNRETGESQDDYDDSKYSTDPDYKPKGGSSIGWDTDTDGLGGAND*
Ga0099850_12231341	3300007960	Aqueous	TEDGEVKVVEVKMRNRETGESQDDYDDSKYATDPDYKPKAGSSIGWDTEIDGLGGEEGND
Ga0075480_102515911	3300008012	Aqueous	AGQRGGLYAKRIVTEDGEVKVIEVKMRNRETGESQDDYDDSKYSTDPDYKPKGGSSIGWDTDTDGLGGAND*
Ga0102957_10422631	3300009027	Pond Water	EDIQAPKTAGQRGGLYAKRIVTEDGEVKVVEVKMRNRETGESQDDYDDSKYATDPDYKPKGGSSIGWDTDTDGLGGAND*
Ga0102814_106096731	3300009079	Estuarine	YAKRIVTEDGEVKVVEVKMRGRKTGESDDDYDDEKYADDEVKNKAGSSIGWDTEADGLGGAD*
Ga0114998_106447151	3300009422	Marine	HGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDDGDLFEFEPDYKPKTGSSIGWDTETDGLGGAND*
Ga0098043_12246321	3300010148	Marine	DTLYAKRIVTEDGEVKVVEMKMRGRKTGESQDDYDDKKYSTDVDYKPKPGSSIGWDTDADGLGGEEGNG*
Ga0129351_12882932	3300010300	Freshwater To Marine Saline Gradient	RIVTEDGEVKVVEMKVRGRQTGESQDDYDDDKYADDEVKNNRVGSSIGWDPDTDGLGGVAVDD*
Ga0136656_11667711	3300010318	Freshwater To Marine Saline Gradient	KVVEVKMRNRETGESQDDYDDSKYATDPDYKPKAGSSIGWDTEIDGLGGEEGND*
Ga0129353_14673522	3300012525	Aqueous	NTLYAKRIVTEDGEVKVVEMKVRGRQTGESQDDYDDDKYADDEVKNNRVGSSIGWDPDTDGLGGVAVDD*
Ga0163110_103115051	3300012928	Surface Seawater	VNLQEEDIQGPKTSGIKNTLYAKRIVTEDGEVKVVEVKMRGRKTGESQDDYDDEKYKNDPDYNPNIKRKAGSSIGWDTDTDGLGGAEDG*
Ga0163110_116230821	3300012928	Surface Seawater	DGEVKVVEVKMRGRKTGESQDDYDDEKYKDDPDYNPNIKRKPGSSIGWDTDTDGLGGAEDG*
Ga0163109_100125927	3300012936	Surface Seawater	DIQAPKTHGVTGSLYAKRIVTEDGEVKVVEMKMRGRKTGESQDNYDDEKYADDEKKNRVGSSIGWDTETDGLGGEAGND*
Ga0163109_101140144	3300012936	Surface Seawater	DIQAPKTHGVTGSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDDELFQFEPDYKPKGGSSIGWDTDTDGLGGADD*
Ga0163179_104461121	3300012953	Seawater	GITNTLYAKRIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKEEADYNPNIKRKAGSSIGWDTETDGLGGAVDVETN*
Ga0163179_116658191	3300012953	Seawater	TEDGEVKVVEMKMRGRQTGESDQDYDDDLFKFEPDYKPKGGSSIGWDTDTDGLGGADD*
Ga0181369_10558641	3300017708	Marine	DSLYAKRIVTEDGEVKVVEMKMRGRQTGESDQDYDDDLFKFEPDYKPKGGSSIGWDTETDGLGGADD
Ga0181387_10273611	3300017709	Seawater	MKVRGRQTGESEDDYDDEKYKEEADYNPNIKRKAGSSIGWDTETDGLGGAVDVETD
Ga0181387_10368121	3300017709	Seawater	MRGRKTGESQDDYDDTKYADDEKKNRAGSSIGWDTETDGLGGATDD
Ga0181387_10989332	3300017709	Seawater	YAKRIVTEDGEVKVVEMKMRGRLTGESDEDYDSDLFEFEPDYKPKGGSSIGWDTETDGLGGAND
Ga0181390_11164481	3300017719	Seawater	NAKRIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKEEADYNPNIKRKSGSSIGWDTETDGLGGAVDEDV
Ga0181373_10489602	3300017721	Marine	VTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDDELFKFEPDYKPKGGSSIGWDTETDGLGGAND
Ga0181388_10290731	3300017724	Seawater	YAKRIVTEDGEVKVVEVKMRGRKTGESDDDYDDEKYADDEVKNKAGSSIGWDTEADGLGGAD
Ga0181419_10631251	3300017728	Seawater	LYAKRIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKDDPDYNPNIKRKAGSSIGWDTEVDGLGGTVDE
Ga0181419_11295731	3300017728	Seawater	RIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKEEADYNPNIKRKSGSSIGWDTETDGLGGAVDVEEN
Ga0181426_10829471	3300017733	Seawater	GEVKVVEMKVRGRQTGESEDDYDDEKYKEETDYNPNIKRKAGSSIGWDTTVDGLGGTVDE
Ga0181431_10468301	3300017735	Seawater	EDGEVKVVEMKVRGTQTGESQDDYDDQKYLDDEAKNKRVGSSIGWDTEVDGLGGAVDE
Ga0181431_10980202	3300017735	Seawater	VTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSELFEFEPDYKPKQGSGSSIGWDTETDGLGGADDG
Ga0181421_11751112	3300017741	Seawater	EMKVRGRQTGESEDDYDDEKYKEETDYNPNIKRKAGSSIGWDTETDGLGGADD
Ga0181389_10538073	3300017746	Seawater	VTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSELFEFEPDYKPKSGSSIGWDTDTDGLGGADD
Ga0181392_11494652	3300017749	Seawater	QAPDSVGITNTLYAKRIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKEETDYNPNIKRKAGSSIGWDTTVDGLGGTVDE
Ga0181405_11259432	3300017750	Seawater	IVTEDGEVKVVEMKVRGRQTGESQDDYDDQKYLDDEAKNKRVGSSIGWDTEVDGLGGAVD
Ga0187219_11049931	3300017751	Seawater	SLYAKRIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKEEADYNPNIKRKSGSSIGWDTETDGLGGAVDEDV
Ga0181408_10673693	3300017760	Seawater	IQDIQSPDSTGITNTLYAKRIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKEEADYNPNIKRKSGSSIGWDTETDGLGGAVDEDV
Ga0181385_10556351	3300017764	Seawater	AKRIVTEDGEVKVVEMKMRGRKTGESDEDYDGEQFSNDLDYKPKPGSSIGWDTDTDGLGGAEDG
Ga0181406_10937232	3300017767	Seawater	KVVEMKVRGRQTGESEDDYDDEKYKEEADYNPNIKRKAGSSIGWDTETDGLGGAVDVETD
Ga0181395_12141981	3300017779	Seawater	EDIQAPKTHGVKDSLYAKRIVTEDGEVKVVEMKMRGRQTGESDQDYDDDLFKFEPDYKPKGGSSIGWDTEADGLGGADD
Ga0181379_12207861	3300017783	Seawater	QAPKTHGVTGSLYAKRIVTEDGEVKVVEMKMRGRLTGESDEDYDSDLFEFEPDYKPKGGSSIAWDTETDGLGGAND
Ga0181607_104210861	3300017950	Salt Marsh	EIPVQEDIQAPKSVAKDGNKYAKRIVTEDGEVKVVEVKMRGRKTGESDDDYDDEKYAEDEAKNKAGSSIGWDTEVDGLGGAD
Ga0181585_101367234	3300017969	Salt Marsh	NTLYAKRIVTEDGEVKVVEMKVRGRQTGESQDDYDDEKYTDDEIKNKRVGSSIGWDPDTDGLGGVAVDD
Ga0181585_102663683	3300017969	Salt Marsh	VVTEDGEVKVVEMKMRNRNTGESQDDYDDEKYAEDEKKNKTGSSIGWDTEVDGLGGEEGN
Ga0181592_101443011	3300018421	Salt Marsh	APDSVGITNTLYAKRIVTEDGEVKVVEMKVRGRQTGESQDDYDDEKYTDDEIKNKRVGSSIGWDPDTDGLGGVAVDD
Ga0181592_102049121	3300018421	Salt Marsh	QAPDSVGITNTLYAKRIVTEDGEVKVVEMKVRGRQTGESQDDYDDEKYADDEVKNKRVGSSIGWDPDTDGLGGVAVDD
Ga0181568_102745994	3300018428	Salt Marsh	KLLDFNSEEEDIQAPKTAGVTGGLYAKRVVTEDGEVKVIEMKMRNRNTGESQDDYDDEKYAEDEKQNKVGSSIGWDTETDGLGGEAGND
Ga0181564_107349851	3300018876	Salt Marsh	NIKLLDFNNEEEDIQAPKTAGVTGGLYAKRVVTEDGEVKVVEMKMRNRNTGESQDDYDDQKYADDEKQNKVGSSIGWDTETDGLGGEAGND
Ga0206124_101168412	3300020175	Seawater	HQAPDSVGVTNTLYAKRIVTEDGEVKVVEMKVRGRQTGESEDDYDDDKYTEDEVKNKRAGSSIGWDTEVDGLGGAVDE
Ga0211636_103694111	3300020400	Marine	KTAGVKGGLYAKRVVTEDGEVKVVEMKMRNRNTGESDEDYDGEQFQNEVDYKPKAGSSIGWDTETDGLGGATDD
Ga0211659_100030491	3300020404	Marine	QDIQAPKTAGVKGGLYAKRVVTEDGEVKVVEMKMRNRNTGESQDDYDDEKYADDEKINKSGSSIGWDTETDGLGGAVDD
Ga0211472_102179721	3300020409	Marine	IVTEDGEVKVVEVKMRGRKTGESQDDYDDEKYKDDPDYNPNIKRKPGSSIGWDTETDGLGGEEGNG
Ga0211653_103871651	3300020421	Marine	KTAGVKGGLYAKRVVTEDGEVKVVEMKMRNRNTGESQDDYDDEKYADDEKINKSGSSIGWDTETDGLGGAVDD
Ga0211565_102099281	3300020433	Marine	GEVKVVEMKMRNRNTGESDEDYDGEQFQNEVDYKPKAGSSIGWDTETDGLGGATDD
Ga0211539_101240073	3300020437	Marine	KVVEMKMRNRKTGESDDDYDDEKYAEDEKINKAGSSIGWDTETDGLGGAVDD
Ga0211559_101728691	3300020442	Marine	KVVEVKMRGRQTGESQDDYDDEKYADDEKKNKAGSSIGWDTEVDGLGGSD
Ga0211640_107418582	3300020465	Marine	VVEMKMRNRKTGESEDDYDDEKYAEDEKINKAGSSIGWDTETDGLGGAIDD
Ga0211577_103126931	3300020469	Marine	TEDGEVKVVEMKMRGRQTGESDEDYDDDLFQFEPDYKAKPGSSIGWDTDADGLGGADDG
Ga0211577_107688872	3300020469	Marine	VTEDGEVKVVEMKMRGRKTGESDEDYDDELFKFEPDYKPKGGSSIGWDTDTDGLGGADDG
Ga0211614_103157821	3300020471	Marine	VKVVEMKMRNRKTGESDDDYDDEKYADDEKINKAGSSIGWDTETDGLGGAIDD
Ga0206677_100470634	3300021085	Seawater	IPLGADEQDIQAPKTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSELFEFEPDYKPKGGSSIGWDTETDGLGGADD
Ga0206682_101081353	3300021185	Seawater	DSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSELFEFEPDYKPKSGSSIGWDTDTDGLGGADD
Ga0206123_101970372	3300021365	Seawater	KRIVTEDGEVKVVEMKMRGRKTGESDEDYDSDLFAFEPDYKPKSGSSIGWDTETDGLGGADD
Ga0213869_100350055	3300021375	Seawater	THGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSELFEFEPDYKPKGGSSIGWDTDTDGLGGADD
Ga0213866_102867221	3300021425	Seawater	APKTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDDELFKFEPDYKPKGGSSIGWDTDTDGLGGADDG
Ga0222717_102100053	3300021957	Estuarine Water	THGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDDGDLFEFEPDFKPKTGSSIGWDTETDGLGGADD
Ga0222716_102361683	3300021959	Estuarine Water	VTEDGEVKVVEMKMRGRKTGESDEDYDDGDLFEFEPDFKPKTGSSIGWDTETDGLGGADD
Ga0255770_100535031	3300022937	Salt Marsh	VLDIDGEEDIQAPKTAGQRGGLYAKRIVTEDGEVKVIEVKMRNRETGESQDDYDDSKYATDPDYKPKAGSSIGWDTEIDGLGGEEGND
Ga0255760_104106202	3300023115	Salt Marsh	VVEMKVRGRQTGESQDDYDDEKYTDDEIKNKRVGSSIGWDPDTDGLGGVAVDD
Ga0255751_102623082	3300023116	Salt Marsh	SVGITNTLYAKRIVTEDGEVKVVEMKVRGRQTGESQDDYDDDKYADDEVKNNRVGSSIGWDPDTDGLGGVAVDD
Ga0255761_101611233	3300023170	Salt Marsh	VGITNTLYAKRIVTEDGEVKVVEMKVRGRQTGESQDDYDDEKYTDDEIKNKRVGSSIGWDPDTDGLGGVAVDD
(restricted) Ga0233438_103303682	3300024255	Seawater	APKTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSELFEFEPDYKPKPGTGSSIGWDTETDGLGGAND
(restricted) Ga0233437_11782872	3300024259	Seawater	LGNDEEDIQAPKTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDDGDLFEFEPDFKPKTGSSIGWDTETDGLGGADD
Ga0233451_100560471	3300024301	Salt Marsh	AKRIVTEDGEVKVVEMKMRGRKTGESDEDYDDELFKFEPDYKPKGGSSIGWDTDTDGLGGADD
Ga0244776_107431642	3300024348	Estuarine	VVEIKVRGRQTGESQDDYDDDKYANEIEGTNPNIKKRAGSSIGWDTDTDGLGGAVDDEVL
Ga0208666_10530103	3300025102	Marine	KTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDGEQFSNDPDYKPKGGSSIGWDTDTDGLGGAEDG
Ga0209232_12021442	3300025132	Marine	EDGEVKVVEVKMRGRKTGESQDDYDDEKYKDDPDYNPNIKRKPGSSIGWDTDTDGLGGAEDG
Ga0208162_11524851	3300025674	Aqueous	LYAKRIVTEDGEVKVVEVKMRNRETGESQDDYDDSKYSTDPDYKPKGGSSIGWDTDTDGLGGAND
Ga0208019_11679981	3300025687	Aqueous	VEVKMRNRETGESQDDYDDSKYATDPDYKPKAGSSIGWDTEIDGLGGEEGND
Ga0208547_12068002	3300025828	Aqueous	KTAGQRGGLYAKRIVTEDGEVKVIEVKMRNRETGESQDDYDDSKYSTDPDYKPKGGSSIGWDTDTDGLGGAND
Ga0209630_104837142	3300025892	Pelagic Marine	PDSVGITNTLYAKRIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKDDPDYNPNIKRKAGSSIGWDTEVDGLGGTVDE
Ga0209192_1000248313	3300027752	Marine	DGEVKVVEMKVRGRQTGESDDDYDDEKYKNDPDYNPNIKRKSGSSIGWDTETDGLGGAVDAAD
Ga0209192_102745061	3300027752	Marine	AIQPIDLHEQDIQAPKTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRQTGESDENYDDGDLFKFEPDYKPKPGSSIGWDTDSDGLGGADD
Ga0208671_102330522	3300027757	Estuarine	EVKVVEMKMRGRKTGESDEDYDDGDLFEFEPDFKPKTGSSIGWDTETDGLGGADD
Ga0209090_100099977	3300027813	Marine	DIQAPDSVGVTNTLYAKRIVTEDGEVKVVEMKVRGRQTGESDDDYDDEKYKNDPDYNPNIKRKSGSSIGWDTETDGLGGAVDAAD
Ga0228674_12793481	3300028008	Seawater	VKDSLYAKRIVTEDGEVKVVEMKMRGRQTGESDEDYDDDLFQFEPDYKAKPGSSIGWDTDADGLGGADDG
Ga0233450_101466783	3300028115	Salt Marsh	DIQAPKTAGVTGGLYAKRVVTEDGEVKVVEMKMRNRNTGESQDDYDDQKYADDEKQNKVGSSIGWDTETDGLGGEAGND
Ga0233401_10803062	3300028127	Seawater	DGEVKVVEVKMRGRKTGESDDDYDDEKYADDEVKNKAGSSIGWDTEADGLGGAD
Ga0257106_11400731	3300028194	Marine	PLGNDEQDIQAPKTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSDLFAFEPDYKPKPGSGSSIGWDTETDGLGGAND
Ga0257110_10260034	3300028197	Marine	DEQDIQAPKTHGVTDSLYAKRIVTEDGEVKVVEMKMRGRKTGESDEDYDSDLFAFEPDYKPKPGSGSSIGWDTETDGLGGAND
Ga0307488_101165513	3300031519	Sackhole Brine	AKRIVTEDGEVKVVEMKVRGRQTGESDDDYDDEKYKNDPDYNPNIKRKSGSSIGWDTETDGLGGAVDEKD
Ga0315320_102411954	3300031851	Seawater	VTEDGEVKVVEMKMRGRKTGESDEDYDSELFEFEPDYKPKQGSGSSIGWDTETDGLGGADDG
Ga0315330_108048401	3300032047	Seawater	SVGITNTLYAKRIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKEETDYNPNIKRKAGSSIGWDTTVDGLGGTVDE
Ga0315321_103873853	3300032088	Seawater	RIVTEDGEVKVVEMKVRGRQTGESEDDYDDEKYKEEADYNPNIKRKSGSSIGWDTETDGLGGAVDEDV
Ga0315334_110769602	3300032360	Seawater	NTLYAKRIVTEDGEVKVVEMKVRGRQTGESDDDYDDIKYENEIEGINPNIKKRAGSSIGWDTDTDGLGGAVDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters