NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099321

Metagenome / Metatranscriptome Family F099321

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099321
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 58 residues
Representative Sequence MQATSSYSNELVQWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYASRV
Number of Associated Samples 90
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 66.02 %
% of genes near scaffold ends (potentially truncated) 42.72 %
% of genes from short scaffolds (< 2000 bps) 69.90 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (73.786 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(14.563 % of family members)
Environment Ontology (ENVO) Unclassified
(64.078 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(83.495 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 68.42%    β-sheet: 0.00%    Coil/Unstructured: 31.58%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF07486Hydrolase_2 11.76
PF13366PDDEXK_3 2.94
PF00929RNase_T 1.96
PF02861Clp_N 0.98
PF02675AdoMet_dc 0.98
PF13280WYL 0.98
PF08411Exonuc_X-T_C 0.98
PF11953DUF3470 0.98
PF05658YadA_head 0.98
PF02777Sod_Fe_C 0.98
PF00156Pribosyltran 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG3773Cell wall hydrolase CwlJ, involved in spore germinationCell cycle control, cell division, chromosome partitioning [D] 11.76
COG0542ATP-dependent Clp protease, ATP-binding subunit ClpAPosttranslational modification, protein turnover, chaperones [O] 0.98
COG0605Superoxide dismutaseInorganic ion transport and metabolism [P] 0.98
COG1586S-adenosylmethionine decarboxylaseAmino acid transport and metabolism [E] 0.98
COG2925Exonuclease I (degrades ssDNA)Replication, recombination and repair [L] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A73.79 %
All OrganismsrootAll Organisms26.21 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10029623All Organisms → Viruses → Predicted Viral3031Open in IMG/M
3300000115|DelMOSum2011_c10017340All Organisms → cellular organisms → Bacteria3530Open in IMG/M
3300000928|OpTDRAFT_10091741All Organisms → Viruses → Predicted Viral2657Open in IMG/M
3300000930|BpDRAFT_10588562Not Available511Open in IMG/M
3300001352|JGI20157J14317_10176671Not Available633Open in IMG/M
3300001354|JGI20155J14468_10231613Not Available542Open in IMG/M
3300001460|JGI24003J15210_10008275All Organisms → cellular organisms → Bacteria4315Open in IMG/M
3300003501|JGI26243J51142_1082308Not Available568Open in IMG/M
3300003584|JGI26254J51713_1029008Not Available1156Open in IMG/M
3300003620|JGI26273J51734_10069494Not Available1046Open in IMG/M
3300004276|Ga0066610_10274806Not Available536Open in IMG/M
3300005239|Ga0073579_1188591Not Available15824Open in IMG/M
3300005239|Ga0073579_1188591Not Available15824Open in IMG/M
3300005432|Ga0066845_10219788Not Available733Open in IMG/M
3300005433|Ga0066830_10000037Not Available18932Open in IMG/M
3300005589|Ga0070729_10727470Not Available532Open in IMG/M
3300005609|Ga0070724_10095459All Organisms → cellular organisms → Bacteria1284Open in IMG/M
3300006467|Ga0099972_12964642All Organisms → Viruses → Predicted Viral1010Open in IMG/M
3300006869|Ga0075477_10066057Not Available1590Open in IMG/M
3300006947|Ga0075444_10058464Not Available1795Open in IMG/M
3300007554|Ga0102820_1094627Not Available717Open in IMG/M
3300008470|Ga0115371_10599582All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300008961|Ga0102887_1219236Not Available578Open in IMG/M
3300009071|Ga0115566_10407192Not Available783Open in IMG/M
3300009071|Ga0115566_10539082Not Available658Open in IMG/M
3300009077|Ga0115552_1417907Not Available528Open in IMG/M
3300009079|Ga0102814_10298701Not Available876Open in IMG/M
3300009135|Ga0118736_10231174Not Available588Open in IMG/M
3300009172|Ga0114995_10001179Not Available18571Open in IMG/M
3300009172|Ga0114995_10365222Not Available792Open in IMG/M
3300009193|Ga0115551_1067226Not Available1723Open in IMG/M
3300009433|Ga0115545_1167273Not Available761Open in IMG/M
3300009440|Ga0115561_1132011Not Available995Open in IMG/M
3300009449|Ga0115558_1384944Not Available549Open in IMG/M
3300009449|Ga0115558_1424987Not Available516Open in IMG/M
3300009472|Ga0115554_1204297Not Available800Open in IMG/M
3300009495|Ga0115571_1019468All Organisms → cellular organisms → Bacteria3500Open in IMG/M
3300009508|Ga0115567_10276698Not Available1059Open in IMG/M
3300009512|Ga0115003_10092364Not Available1869Open in IMG/M
3300009512|Ga0115003_10274307Not Available1001Open in IMG/M
3300009528|Ga0114920_10235959Not Available1223Open in IMG/M
3300009705|Ga0115000_11009475Not Available507Open in IMG/M
3300014903|Ga0164321_10007037All Organisms → cellular organisms → Bacteria3192Open in IMG/M
3300014903|Ga0164321_10162503All Organisms → cellular organisms → Bacteria991Open in IMG/M
3300017721|Ga0181373_1092952Not Available534Open in IMG/M
3300017743|Ga0181402_1174647Not Available538Open in IMG/M
3300017752|Ga0181400_1053754All Organisms → cellular organisms → Bacteria1243Open in IMG/M
3300017818|Ga0181565_10011333All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium6713Open in IMG/M
3300017824|Ga0181552_10000630Not Available26910Open in IMG/M
3300017824|Ga0181552_10012840All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5421Open in IMG/M
3300017824|Ga0181552_10055006Not Available2322Open in IMG/M
3300018036|Ga0181600_10015558All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5427Open in IMG/M
3300018048|Ga0181606_10016704All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5614Open in IMG/M
3300018410|Ga0181561_10411068Not Available614Open in IMG/M
3300020165|Ga0206125_10179631All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300020185|Ga0206131_10073089All Organisms → cellular organisms → Bacteria2116Open in IMG/M
3300020352|Ga0211505_1077230Not Available801Open in IMG/M
3300020385|Ga0211677_10012716Not Available4504Open in IMG/M
3300020413|Ga0211516_10493466Not Available535Open in IMG/M
3300020421|Ga0211653_10021753Not Available3027Open in IMG/M
3300020431|Ga0211554_10000822Not Available22822Open in IMG/M
3300020438|Ga0211576_10084192All Organisms → cellular organisms → Bacteria1770Open in IMG/M
3300020469|Ga0211577_10073585Not Available2420Open in IMG/M
3300021335|Ga0213867_1054143Not Available1526Open in IMG/M
3300021365|Ga0206123_10234847Not Available802Open in IMG/M
3300021389|Ga0213868_10031119Not Available3961Open in IMG/M
3300021389|Ga0213868_10129024Not Available1593Open in IMG/M
3300021958|Ga0222718_10437588Not Available645Open in IMG/M
3300022905|Ga0255756_1275065Not Available551Open in IMG/M
3300022907|Ga0255775_1194348Not Available781Open in IMG/M
3300022909|Ga0255755_1260189Not Available626Open in IMG/M
3300024301|Ga0233451_10137272Not Available1140Open in IMG/M
3300024319|Ga0228670_1039969All Organisms → cellular organisms → Bacteria1101Open in IMG/M
3300024322|Ga0228656_1072341All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300024348|Ga0244776_10595942Not Available698Open in IMG/M
3300024348|Ga0244776_10657103Not Available653Open in IMG/M
3300024429|Ga0209991_10214463Not Available945Open in IMG/M
3300025120|Ga0209535_1025875All Organisms → cellular organisms → Bacteria2862Open in IMG/M
3300025120|Ga0209535_1030474All Organisms → Viruses → Predicted Viral2558Open in IMG/M
3300025276|Ga0208814_1008964All Organisms → cellular organisms → Bacteria3671Open in IMG/M
3300025276|Ga0208814_1015796All Organisms → cellular organisms → Bacteria2597Open in IMG/M
3300025663|Ga0209775_1035439Not Available1547Open in IMG/M
3300025666|Ga0209601_1190955Not Available549Open in IMG/M
3300025667|Ga0209043_1022239All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2238Open in IMG/M
3300025671|Ga0208898_1087758Not Available981Open in IMG/M
3300025690|Ga0209505_1142473Not Available643Open in IMG/M
3300025769|Ga0208767_1217454Not Available627Open in IMG/M
3300025892|Ga0209630_10025356All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3921Open in IMG/M
3300025892|Ga0209630_10325566Not Available689Open in IMG/M
3300025897|Ga0209425_10320385Not Available769Open in IMG/M
3300027687|Ga0209710_1029358All Organisms → Viruses → Predicted Viral2730Open in IMG/M
3300027780|Ga0209502_10332859Not Available643Open in IMG/M
(restricted) 3300027996|Ga0233413_10520278Not Available528Open in IMG/M
3300028115|Ga0233450_10129923Not Available1286Open in IMG/M
3300028137|Ga0256412_1320854Not Available569Open in IMG/M
3300028282|Ga0256413_1280581Not Available589Open in IMG/M
3300031606|Ga0302119_10155462Not Available906Open in IMG/M
3300031608|Ga0307999_1057674Not Available915Open in IMG/M
3300031700|Ga0302130_1025278Not Available2019Open in IMG/M
3300031703|Ga0308002_1082550Not Available700Open in IMG/M
3300031766|Ga0315322_10668624Not Available657Open in IMG/M
3300031774|Ga0315331_10041329Not Available3421Open in IMG/M
3300031848|Ga0308000_10243096Not Available683Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine14.56%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine12.62%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh11.65%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine8.74%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater6.80%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.85%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine4.85%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine4.85%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous2.91%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.91%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.91%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.94%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.94%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.94%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.94%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.94%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.94%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.94%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.94%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.94%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.97%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.97%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.97%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.97%
Marine SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment0.97%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300003501Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNAEnvironmentalOpen in IMG/M
3300003584Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_120m_DNAEnvironmentalOpen in IMG/M
3300003620Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNAEnvironmentalOpen in IMG/M
3300004276Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165mEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005432Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78EnvironmentalOpen in IMG/M
3300005433Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45BEnvironmentalOpen in IMG/M
3300005589Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.2EnvironmentalOpen in IMG/M
3300005609Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1EnvironmentalOpen in IMG/M
3300006467Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935EnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007554Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709EnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300008961Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009135Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsfEnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009528Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaGEnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300014903Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cmEnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018048Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018410Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020352Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)EnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300020413Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)EnvironmentalOpen in IMG/M
3300020421Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)EnvironmentalOpen in IMG/M
3300020431Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300022905Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaGEnvironmentalOpen in IMG/M
3300022907Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaGEnvironmentalOpen in IMG/M
3300022909Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaGEnvironmentalOpen in IMG/M
3300024301Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504CT (spades assembly)EnvironmentalOpen in IMG/M
3300024319Seawater microbial communities from Monterey Bay, California, United States - 85DEnvironmentalOpen in IMG/M
3300024322Seawater microbial communities from Monterey Bay, California, United States - 68DEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300024429Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025663Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025666Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)EnvironmentalOpen in IMG/M
3300025667Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025690Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300027687Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)EnvironmentalOpen in IMG/M
3300027780Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)EnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300028115Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (spades assembly)EnvironmentalOpen in IMG/M
3300028137Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_74 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028282Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031606Marine microbial communities from Western Arctic Ocean, Canada - AG5_TmaxEnvironmentalOpen in IMG/M
3300031608Marine microbial communities from water near the shore, Antarctic Ocean - #1EnvironmentalOpen in IMG/M
3300031700Marine microbial communities from Western Arctic Ocean, Canada - CB9_surfaceEnvironmentalOpen in IMG/M
3300031703Marine microbial communities from water near the shore, Antarctic Ocean - #34EnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300031848Marine microbial communities from water near the shore, Antarctic Ocean - #3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1002962353300000101MarineMQATSSYSNAVCKWWTVARINGYPQRVYCMASNAYEASNIFRSLYGSQLINEYASRA*
DelMOSum2011_1001734063300000115MarineMQATHSYSNEVYEWWTIANIDGYPQRVYCMATNAYEASNIFRSLYGSQLVNEYASRV*
OpTDRAFT_1009174123300000928Freshwater And MarineMNWQASSQFSNSQHEWWTMANINGYPQKVYCTAGNAFEASNIFKSLYGSQLINENASRV*
BpDRAFT_1058856213300000930Freshwater And MarineMGWASQQSGYQATTSYSNEIVEWWTVANINGYPQRVYCSAANAYEASNIFQSLYGNQLINTMASRC*
JGI20157J14317_1017667113300001352Pelagic MarineMQASSQYSNSLHEWWTMANINGYPQXVYCTAANAFEASNIFKSLYGNQLINEYASRV*
JGI20155J14468_1023161313300001354Pelagic MarineFQATHSYSNDIVKWWTIANIDGYPQRVYVMASNAFEASNIFKSIYGDQLINEYASRA*
JGI24003J15210_1000827523300001460MarineMQATHSYSNEVHEWWTIANIDGYPQRVYCMATNAYEASNIFRSLYGSQLVNEYASRV*
JGI26243J51142_108230813300003501MarineMKKFQATNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA
JGI26254J51713_102900823300003584MarineQAIHSRSNDIYKWWTVANINGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA*
JGI26273J51734_1006949413300003620MarineMKKFQATNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGNQLINEYASRA
Ga0066610_1027480623300004276MarineMKKFQATNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINE
Ga0073579_1188591123300005239MarineMKKFQASNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEATNIFKSIYGDQLINEYASRA
Ga0073579_1188591163300005239MarineMRKKFQATHSYSSDIYKWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA*
Ga0066845_1021978813300005432MarineMQATSSYSNEVHKWWSIANINGYPQKVYCVAPNAFEASNIFKSLYGSQLINEFASREVN*
Ga0066830_10000037183300005433MarineMQATSSYSNELVQWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYASRV*
Ga0070729_1072747023300005589Marine SedimentMQATHSYSNEVYEWWTIANIDGYPQRVYCMATNAYEASNIFRSLYGSQLINEYASRA*
Ga0070724_1009545953300005609Marine SedimentMQATSSYSNAVCKWWTVARINGYPQRVYCMASNAYEASNIFRSL
Ga0099972_1296464233300006467MarineMQATHSYSNEVYEWWTIANIDGYPQRVYCMASNAYEASNIFRSLYGSQLINEYASRA*
Ga0075477_1006605723300006869AqueousMKRFQATKSHSNDLYQWWTMANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA
Ga0075444_1005846433300006947MarineMQATNSYSNSVYEWWTVANINGYPQRVYCTAVNSYEASNIFKAIYGNQLVNESANRC*
Ga0102820_109462713300007554EstuarineWDGNATHSYSNELCQWWTMANIDGYPQRVYCTAANAFEASNIFKSIYGNQLINEYANRA*
Ga0115371_1059958213300008470SedimentMQATYSNSNEVHEWWTIANMDGYPQRVYCMATNAYEASNIFRSLYGSQLVNEYASRV*
Ga0102887_121923623300008961EstuarineMGWASQQSGYQATTSYSNEIVEWWTVANINGYPQRVYCSAANAYEASNIFQSLYG
Ga0115566_1040719233300009071Pelagic MarineMQASSQYSNSLHEWWTMANINGYPQRVYCTAANAFEANNIFKSLYGNQLINEYASRV*
Ga0115566_1053908223300009071Pelagic MarineRLKEKKYTMKKFQATHSYSNDIVKWWTIANIDGYPQRVYVMASNAFEASNIFKSIYGDQLINEYASRA*
Ga0115552_141790713300009077Pelagic MarineMRKKNIMKKFQASHSYSSDLYKWWTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASRA*
Ga0102814_1029870123300009079EstuarineMKKFQASKSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA
Ga0118736_1023117413300009135Marine SedimentMQATSSYSNAVCKWWTVARINGYPQRVYCMASNAYEASNIFRSLYGSQLINEYASR
Ga0114995_10001179353300009172MarineMQATNSYSNEVHEWWTIANIDGYPQRVYCMASNAYEASNIFRSLYGSLLVNEYASRA*
Ga0114995_1036522213300009172MarineNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGNQLINEYASRI*
Ga0115551_106722623300009193Pelagic MarineMKATNHHSNSIYEWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASRA*
Ga0115545_116727313300009433Pelagic MarineMQASSQYSNSLHEWWTVANINGYPQRVYCTAANAFEASNIFKSLYGNQLINEYASRV*
Ga0115561_113201123300009440Pelagic MarineMQASSQYSNSLHEWWTMANINGYPQRVYCTAANAFEASNIFKSLYGNQLINEYASRV*
Ga0115558_138494423300009449Pelagic MarineYSNELCHWWTMANIDGYPQRVYCTAANAFEASNIFKSIYGNQLINEYASRA*
Ga0115558_142498713300009449Pelagic MarineMQASSQYSNSLHEWWTMANINGYPQRVYCTAANAFEASNIFKSLYGSQL
Ga0115554_120429713300009472Pelagic MarineHHSNSIYEWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASRA*
Ga0115571_101946833300009495Pelagic MarineMSMWQAQSQHSNSLHEWWTIANINGYPQRVYCTAANAFEASNIFKSLYGNQLINEYASRV
Ga0115567_1027669813300009508Pelagic MarineMKKFQASNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEY
Ga0115003_1009236413300009512MarineMKKFQATNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGNQLINEY
Ga0115003_1027430713300009512MarineMKKFQATHSRSNDIYKWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDKLINEYASRA
Ga0114920_1023595913300009528Deep SubsurfaceMQATNSYSNAVCEWWTVARINGYPQRVYCMASNAYEASNIFRSLYGSQLVNEYASRV*
Ga0115000_1100947513300009705MarineKKFQATHSFSSDIYKWWTVANINGYPQKVYCTAANAFEASNIFKSIYDDKLINEYASRA*
Ga0164321_1000703743300014903Marine SedimentMQASSSYSNALVEWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYATRV*
Ga0164321_1016250313300014903Marine SedimentMSMWQANSQHSNSLHEWWTMANINGYPQKVYCTALNAFEASNIFKSLYGSQLINEYASRV
Ga0181373_109295213300017721MarineMSMWQAQASSQHSSSLHEWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYASRV
Ga0181402_117464713300017743SeawaterWQASSQFSNSQHEWWTMANINGYPQKVYCTAGNAFEASNIFKSLYGSQLINEYASRV
Ga0181400_105375453300017752SeawaterMSMWQAQASSQHSSSLHEWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQ
Ga0181565_1001133393300017818Salt MarshMKKFQATKSHSNDLYQWWTMVNIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRS
Ga0181552_10000630283300017824Salt MarshMQATSSYSNELVQWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYASRV
Ga0181552_1001284043300017824Salt MarshMKKFQATKSHSNDLYQWWTMANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA
Ga0181552_1005500623300017824Salt MarshMKKFQASHSYSSDLYKWWTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASRA
Ga0181600_1001555843300018036Salt MarshMKKFQATKSHSNDLCQWWTMVNIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRS
Ga0181606_1001670453300018048Salt MarshMKKFQATKSHSNDLYQWWTMANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRS
Ga0181561_1041106813300018410Salt MarshRAGGGIVMQATSSYSNELVQWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYASRV
Ga0206125_1017963113300020165SeawaterMQASSQYSNSLHEWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYASRV
Ga0206131_1007308953300020185SeawaterMSMWQAQSQHSNSLHEWWTMANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYASRV
Ga0211505_107723013300020352MarineMKKFQASNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYA
Ga0211677_1001271623300020385MarineMQATSSYSNELVQWCTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYASRVN
Ga0211516_1049346623300020413MarineMNKFQATHSHSNDLYKWWTIANIDGYPQKVYCTAANAFEASNIFKSIYGEQLINEYASRV
Ga0211653_1002175333300020421MarineMQATSSYSNELVQWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEFASREVN
Ga0211554_10000822153300020431MarineMQATHSYSNEVYEWWTIANIDGYPQRVYCMATNAYEASNIFRSLYGSQLVNEYASRV
Ga0211576_1008419233300020438MarineMNWQASSQFSNSQHEWWTMANINGYPQKVYCTAGNAFEASNIFKSLYGSQLINENASRV
Ga0211577_1007358533300020469MarineMNKFQATHSHSNEIYKWWTIALIEGYPQKVFCTAANAFEASNIFKSIYGEQLINEYASRV
Ga0213867_105414313300021335SeawaterMKANNHHSNSIYEWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASR
Ga0206123_1023484723300021365SeawaterMKATNHHSNSIYEWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASRA
Ga0213868_1003111963300021389SeawaterWDGNATHSYSNELCQWWTMANIDGYPQRVYCNAANAFEASNIFKSIYGNQLINEYANRA
Ga0213868_1012902423300021389SeawaterNELYQWWTVANIDGYPQRVYCTAANAFEASNIFKSIYGNQLINEYASRV
Ga0222718_1043758813300021958Estuarine WaterWDGNATHSYSNELYQWWTVANIDGYPQRVYCTAANAFEASNIFKSIYGNQLVNEYASRA
Ga0255756_127506513300022905Salt MarshMQATSSYSNELVQWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINEYAS
Ga0255775_119434823300022907Salt MarshQTWDGNATHSYSNELYQWWTVANIDGYPQRVYCTAANAFEASNIFKSIYGNQLINEYASR
Ga0255755_126018913300022909Salt MarshMKKFQASHSYSSDLYKWWTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINE
Ga0233451_1013727213300024301Salt MarshMKANNHHSNSIYEWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASRA
Ga0228670_103996913300024319SeawaterMSMWQAQASSQHSSSLHEWWTVANINGYPQRVYCTAANAFEASNIFKSLYG
Ga0228656_107234133300024322SeawaterMSMWQAQASSQHSSSLHEWWTVANINGYPQRVYCTAANAFEASNIFKSLY
Ga0244776_1059594223300024348EstuarineNELYQWWTVANIDGYPQRVYCTAANAFEASNIFKSMYGNQLINEYASRA
Ga0244776_1065710313300024348EstuarineMGWASQQSGYQATTSYSNEIVEWWTVANINGYPQRVYCSAANAYEASNIFQSLYGNQLINTMASRC
Ga0209991_1021446323300024429Deep SubsurfaceMQATNSYSNAVCEWWTVARINGYPQRVYCMASNAYEASNIFRSLYGSQLINEYASRV
Ga0209535_102587523300025120MarineMQATSSYSNAVCKWWTVARINGYPQRVYCMASNAYEASNIFRSLYGSQLINEYASRA
Ga0209535_103047423300025120MarineMQATHSYSNEVHEWWTIANIDGYPQRVYCMATNAYEASNIFRSLYGSQLVNEYASRV
Ga0208814_100896433300025276Deep OceanMQATNSYSNSVYEWWTVANINGYPQRVYCTAVNSYEASNIFKAIYGNQLVNESANRC
Ga0208814_101579633300025276Deep OceanMQATYSNSNEVHEWWTIANMDGYPQRVYCMATNAYEASNIFRSLYGSQLVNEYASRV
Ga0209775_103543933300025663MarineMKKFQASNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA
Ga0209601_119095513300025666Pelagic MarineYSNELCHWWTMANIDGYPQRVYCTAANAFEASNIFKSIYGNQLINEYASRA
Ga0209043_102223913300025667MarineKKFQAIHSRSNDIYKWWTVANINGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA
Ga0208898_108775843300025671AqueousMQASSQYSNSLHEWWTMANINGYPQRVYCTAANAFEASNIFKSLYGNQLINEYASRV
Ga0209505_114247313300025690Pelagic MarineMQASSQYSNSLHEWWTMANINGYPQRVYCTAANAFEASNIFKSLYGNQLIN
Ga0208767_121745433300025769AqueousMQASSQYSNSLHEWWTMANINGYPQRVYCTAANAFEASNIFKSLYGNQLINE
Ga0209630_1002535613300025892Pelagic MarineLSKNCMKATNHHSNSIYEWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASRA
Ga0209630_1032556623300025892Pelagic MarineSTSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA
Ga0209425_1032038513300025897Pelagic MarineMRKKNIMKKFQASHSYSSDLYKWWTIANIDGYPQKVYCTAANAFEASNIFKSIY
Ga0209710_102935873300027687MarineMQATNSYSNEVHEWWTIANIDGYPQRVYCMASNAYEASNIFRSLYGSLLVNEYASRA
Ga0209502_1033285913300027780MarineMKKFQATHSRSNDIYKWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEYASRA
(restricted) Ga0233413_1052027823300027996SeawaterVSVMGWASQQSGYQATTSYSNEIVEWWTVANINGYPQRVYCSAANAYEASNIFQSLYGNQLINTMASRC
Ga0233450_1012992333300028115Salt MarshQASHSYSSDLYKWWTIANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASRA
Ga0256412_132085413300028137SeawaterMRTLFVATKQEFMKATNHHSNSIYEWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASR
Ga0256413_128058123300028282SeawaterPINAGVSVMSMWQAQASSQHSSSLHEWWTVANINGYPQRVYCTAANAFEASNIFKSLYGSQLINENASRV
Ga0302119_1015546233300031606MarineMGFNSWQDAQQATTSYSNEIVEWWTVANINGYPQRVYCSAANAYEASNIFQSLYGNQLINTMASRC
Ga0307999_105767423300031608MarineMQATYEHSNASHEWWTIVNMDGYMQKVYCTASNAYEASNIFRSIYGSQLVNQYATRC
Ga0302130_102527833300031700MarineNAGGSVMQATNSYSNEVHEWWTIANIDGYPQRVYCMASNAYEASNIFRSLYGSLLVNEYASRA
Ga0308002_108255013300031703MarineMQATYSNSNEVHEWWTIANMDGYPQRVYCMATNAYEASNIFRSLY
Ga0315322_1066862423300031766SeawaterMKKFQASNSHSNDLYQWFTIANIDGYPQKVYCTAANAFEASNIFKSIYGNQLINEYASRA
Ga0315331_1004132923300031774SeawaterMRTLFVATKQEFMKATNHHSNSIYEWWTVANIDGYPQKVYCTAANAFEASNIFKSIYGDQLINEHASRA
Ga0308000_1024309623300031848MarineVNAGVSVMQATNSYSNSVYEWWTVANINGYPQRVYCTAVNSYEASNIFKAIYGNQLVNESANRC


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