NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099288

Metagenome Family F099288

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099288
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 58 residues
Representative Sequence MEYKYNTLEEAQTALDTVNAYFGLPCGDDCLTWTDIQEGDGYWFLQADRLEEVLG
Number of Associated Samples 52
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 26.21 %
% of genes near scaffold ends (potentially truncated) 9.71 %
% of genes from short scaffolds (< 2000 bps) 65.05 %
Associated GOLD sequencing projects 47
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.252 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(30.097 % of family members)
Environment Ontology (ENVO) Unclassified
(66.019 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(41.748 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 24.10%    β-sheet: 13.25%    Coil/Unstructured: 62.65%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00959Phage_lysozyme 18.45
PF05766NinG 4.85
PF01510Amidase_2 4.85
PF01075Glyco_transf_9 3.88
PF13469Sulfotransfer_3 2.91
PF05105Phage_holin_4_1 2.91
PF00118Cpn60_TCP1 0.97
PF09603Fib_succ_major 0.97
PF13539Peptidase_M15_4 0.97
PF10431ClpB_D2-small 0.97
PF01391Collagen 0.97
PF13392HNH_3 0.97
PF04404ERF 0.97
PF08774VRR_NUC 0.97
PF01583APS_kinase 0.97
PF13482RNase_H_2 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0859ADP-heptose:LPS heptosyltransferaseCell wall/membrane/envelope biogenesis [M] 3.88
COG4824Phage-related holin (Lysis protein)Mobilome: prophages, transposons [X] 2.91
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 0.97
COG0529Adenylylsulfate kinase or related kinaseInorganic ion transport and metabolism [P] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.25 %
All OrganismsrootAll Organisms41.75 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2046860005|LWAeNNiAF_GBUVFP102JGVBFNot Available520Open in IMG/M
3300002835|B570J40625_101451747Not Available564Open in IMG/M
3300003277|JGI25908J49247_10000420Not Available12830Open in IMG/M
3300003277|JGI25908J49247_10001894All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6678Open in IMG/M
3300003277|JGI25908J49247_10005128Not Available4188Open in IMG/M
3300003277|JGI25908J49247_10026597All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1672Open in IMG/M
3300003277|JGI25908J49247_10136086Not Available577Open in IMG/M
3300005580|Ga0049083_10006861All Organisms → Viruses → Predicted Viral4244Open in IMG/M
3300005580|Ga0049083_10131783Not Available860Open in IMG/M
3300005581|Ga0049081_10110936Not Available1019Open in IMG/M
3300005582|Ga0049080_10058522All Organisms → cellular organisms → Bacteria1327Open in IMG/M
3300006484|Ga0070744_10089230Not Available893Open in IMG/M
3300006805|Ga0075464_10020747Not Available3395Open in IMG/M
3300007972|Ga0105745_1014665All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1885Open in IMG/M
3300007973|Ga0105746_1009903All Organisms → cellular organisms → Bacteria2699Open in IMG/M
3300007973|Ga0105746_1225510All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300008267|Ga0114364_1101011Not Available898Open in IMG/M
3300009026|Ga0102829_1170241Not Available701Open in IMG/M
3300009169|Ga0105097_10000462All Organisms → cellular organisms → Bacteria18494Open in IMG/M
3300009169|Ga0105097_10006861Not Available5808Open in IMG/M
3300009169|Ga0105097_10007109Not Available5714Open in IMG/M
3300009169|Ga0105097_10040689All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2495Open in IMG/M
3300009169|Ga0105097_10122045Not Available1429Open in IMG/M
3300009169|Ga0105097_10180654All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium daemonense1161Open in IMG/M
3300009169|Ga0105097_10219843Not Available1046Open in IMG/M
3300009169|Ga0105097_10224240All Organisms → Viruses → Predicted Viral1035Open in IMG/M
3300009169|Ga0105097_10857621Not Available520Open in IMG/M
3300009183|Ga0114974_10006165All Organisms → cellular organisms → Bacteria8885Open in IMG/M
3300009419|Ga0114982_1158585Not Available699Open in IMG/M
3300012017|Ga0153801_1019313Not Available1214Open in IMG/M
3300012666|Ga0157498_1023199Not Available965Open in IMG/M
3300012666|Ga0157498_1065993Not Available557Open in IMG/M
3300013372|Ga0177922_10153374Not Available1093Open in IMG/M
3300013372|Ga0177922_10395278Not Available535Open in IMG/M
3300013372|Ga0177922_11105095All Organisms → Viruses587Open in IMG/M
3300017722|Ga0181347_1104910Not Available803Open in IMG/M
3300017761|Ga0181356_1093291Not Available988Open in IMG/M
3300017778|Ga0181349_1013243All Organisms → cellular organisms → Bacteria3412Open in IMG/M
3300017778|Ga0181349_1036310All Organisms → Viruses → Predicted Viral1968Open in IMG/M
3300017780|Ga0181346_1178395Not Available779Open in IMG/M
3300017780|Ga0181346_1255922Not Available610Open in IMG/M
3300017784|Ga0181348_1085831Not Available1244Open in IMG/M
3300017784|Ga0181348_1184719Not Available758Open in IMG/M
3300019784|Ga0181359_1053830Not Available1549Open in IMG/M
3300020561|Ga0207934_1010134Not Available1532Open in IMG/M
3300021963|Ga0222712_10023138All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5105Open in IMG/M
3300022407|Ga0181351_1016857All Organisms → Viruses → Predicted Viral3062Open in IMG/M
3300022407|Ga0181351_1130343Not Available931Open in IMG/M
3300022543|Ga0212119_1026616Not Available948Open in IMG/M
3300025896|Ga0208916_10016416All Organisms → cellular organisms → Bacteria2905Open in IMG/M
3300027205|Ga0208926_1029697Not Available821Open in IMG/M
3300027608|Ga0208974_1085877Not Available855Open in IMG/M
3300027621|Ga0208951_1022480All Organisms → Viruses → Predicted Viral1985Open in IMG/M
3300027621|Ga0208951_1025222All Organisms → Viruses → Predicted Viral1854Open in IMG/M
3300027710|Ga0209599_10118359Not Available699Open in IMG/M
3300027721|Ga0209492_1000906All Organisms → cellular organisms → Bacteria9148Open in IMG/M
3300027721|Ga0209492_1003651Not Available4916Open in IMG/M
3300027721|Ga0209492_1028318Not Available1943Open in IMG/M
3300027721|Ga0209492_1170162Not Available755Open in IMG/M
3300027732|Ga0209442_1002899All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage9043Open in IMG/M
3300027732|Ga0209442_1313452Not Available537Open in IMG/M
3300027744|Ga0209355_1007068All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5982Open in IMG/M
3300027764|Ga0209134_10132535Not Available859Open in IMG/M
3300027772|Ga0209768_10297946All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium679Open in IMG/M
3300027785|Ga0209246_10002253Not Available7430Open in IMG/M
3300027785|Ga0209246_10141720Not Available945Open in IMG/M
3300027785|Ga0209246_10163926All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium873Open in IMG/M
3300027785|Ga0209246_10195641Not Available791Open in IMG/M
3300031707|Ga0315291_10817695All Organisms → Viruses809Open in IMG/M
3300032018|Ga0315272_10313483Not Available763Open in IMG/M
3300032053|Ga0315284_10731199All Organisms → Viruses → Predicted Viral1157Open in IMG/M
3300032275|Ga0315270_10314239All Organisms → cellular organisms → Bacteria985Open in IMG/M
3300033984|Ga0334989_0007431Not Available5540Open in IMG/M
3300033984|Ga0334989_0016388Not Available3887Open in IMG/M
3300033984|Ga0334989_0029799All Organisms → Viruses → Predicted Viral2936Open in IMG/M
3300033984|Ga0334989_0056131All Organisms → Viruses → Predicted Viral2164Open in IMG/M
3300033984|Ga0334989_0276588Not Available901Open in IMG/M
3300033995|Ga0335003_0007430All Organisms → cellular organisms → Bacteria5626Open in IMG/M
3300033995|Ga0335003_0010112All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4917Open in IMG/M
3300033995|Ga0335003_0014651Not Available4171Open in IMG/M
3300033995|Ga0335003_0023010All Organisms → Viruses → Predicted Viral3358Open in IMG/M
3300033995|Ga0335003_0129923Not Available1273Open in IMG/M
3300033995|Ga0335003_0214363Not Available913Open in IMG/M
3300034060|Ga0334983_0109876All Organisms → Viruses → Predicted Viral1770Open in IMG/M
3300034064|Ga0335001_0005800All Organisms → cellular organisms → Bacteria7382Open in IMG/M
3300034064|Ga0335001_0041526All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2680Open in IMG/M
3300034064|Ga0335001_0079049Not Available1891Open in IMG/M
3300034064|Ga0335001_0128468All Organisms → Viruses → Predicted Viral1441Open in IMG/M
3300034093|Ga0335012_0233791Not Available960Open in IMG/M
3300034105|Ga0335035_0023059Not Available4150Open in IMG/M
3300034105|Ga0335035_0029143All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3678Open in IMG/M
3300034105|Ga0335035_0032578All Organisms → cellular organisms → Bacteria3472Open in IMG/M
3300034105|Ga0335035_0034830Not Available3350Open in IMG/M
3300034105|Ga0335035_0103495Not Available1832Open in IMG/M
3300034105|Ga0335035_0139164All Organisms → cellular organisms → Bacteria1537Open in IMG/M
3300034105|Ga0335035_0168761All Organisms → Viruses → Predicted Viral1368Open in IMG/M
3300034105|Ga0335035_0191883All Organisms → cellular organisms → Bacteria1263Open in IMG/M
3300034105|Ga0335035_0229463Not Available1128Open in IMG/M
3300034105|Ga0335035_0664744All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage540Open in IMG/M
3300034167|Ga0335017_0000097Not Available44113Open in IMG/M
3300034167|Ga0335017_0005401Not Available6814Open in IMG/M
3300034168|Ga0335061_0235541Not Available965Open in IMG/M
3300034357|Ga0335064_0249998Not Available1126Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater30.10%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake24.27%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment12.62%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic6.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater3.88%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment3.88%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water2.91%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.94%
Freshwater, Surface IceEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice1.94%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.94%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.94%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment0.97%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton0.97%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.97%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.97%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.97%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2046860005Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from SIP 13C-methane aerobic no nitrate additional fractionEnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009169Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009419Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FTEnvironmentalOpen in IMG/M
3300012017Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012666Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2EnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020561Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022543Indian_combined assemblyEnvironmentalOpen in IMG/M
3300025896Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027205Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027621Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027721Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027732Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027764Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300031707Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20EnvironmentalOpen in IMG/M
3300032018Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middleEnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032275Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottomEnvironmentalOpen in IMG/M
3300033984Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030EnvironmentalOpen in IMG/M
3300033995Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056EnvironmentalOpen in IMG/M
3300034060Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016EnvironmentalOpen in IMG/M
3300034064Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054EnvironmentalOpen in IMG/M
3300034093Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072EnvironmentalOpen in IMG/M
3300034105Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127EnvironmentalOpen in IMG/M
3300034167Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082EnvironmentalOpen in IMG/M
3300034168Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183EnvironmentalOpen in IMG/M
3300034357Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LWAeNNiAF_26499502046860005Freshwater SedimentMVEYRYNTYEEAQTALDTVNAYFELPSGGTLTWTEIQEGDGYWFLQADRLDEVLG
B570J40625_10145174723300002835FreshwaterMYIYNTLEEAQSALEIVNTYFGLPCGETLNWTDIQEGDGFWYLSADRLEEVLGNE*
JGI25908J49247_10000420103300003277Freshwater LakeMVEYKYNTYEEAQTALDTVNVYFGLPCGDDCLTWTEIQRGEGYWFLQADRLEEVLGEPIEIEL*
JGI25908J49247_1000189483300003277Freshwater LakeMVEYRYNTLEEAQSALDTVNAYFGLPCGETLTWTKVKIGDGYWFLEADRLEEVLGEPVEL
JGI25908J49247_1000512833300003277Freshwater LakeMEEYRYNTYEEAQVALDTVNAYFGLPCGETLNWTSIEEGDGYWYLKADRLDEVLG*
JGI25908J49247_1002659733300003277Freshwater LakeMILGYKYNTLEEAEASLEIVNTYFGLPCGEDCLRWTDVEEGDGFWYLFAERLEEVLGEPVIIEINR*
JGI25908J49247_1013608633300003277Freshwater LakeMNNIVYKYNTYEEAQGALDTVNAYFGLPCGDDCLTWTDIQRGEDYWFLQADRLDEVL*
Ga0049083_1000686133300005580Freshwater LenticMILGYKYNTLEEAEASLEIVNTYFGLPCGEDCLRWTDVEEGDGFWYLSAERLEEVLGEPVIIIL*
Ga0049083_1013178343300005580Freshwater LenticMEKYIFNTYEEAQTALNTVNSYFGLPCGETLNWTDIQEGDGFWYLEADRLDEVLG*
Ga0049081_1011093623300005581Freshwater LenticMEEYRYNTYAEAQTALDTVNAYFELPSGGTLTWTEIQEGDGYWFLQADRLDEVLG*
Ga0049080_1005852243300005582Freshwater LenticMDYKYNTYEEAQTVLDTVNAYFGLPCGETLTWTEVQEGDGYWFLQADRLEEVLGQPI
Ga0070744_1008923023300006484EstuarineMVKYKYNTLEEAQTALDTVNAYFGLPCGDDCLIWTDIQEGDGYWFLQAERLDEVLG*
Ga0075464_1002074733300006805AqueousMVEYKYNTYAEAKTALDTVNAYFGLPCGDDCLTWTEIQEGEGYWFLSADRLNEILGE*
Ga0105745_101466533300007972Estuary WaterMYKYNTLEEAQTALDTVNAYFELPSGETLTWTEIQEGDGYWFLQADRLEEVL*
Ga0105746_100990343300007973Estuary WaterMYKYNTLEEAQTALDTVNAYFELPSGETLTWTEIQEGDGYWFFQADRLEEVL*
Ga0105746_122551013300007973Estuary WaterKHRKQYKHILDNILIMEEYRYNTLEEAQSALDTVNTFFGLPCGETLNWTDIQEGDGYWFLQAERLDEVL*
Ga0114364_110101123300008267Freshwater, PlanktonMVKMGFKYNTLEEAQAALEMANTFFGLPCAESLRCADIEEGDGFWYMSAFRLEEALGEPVEIEIAE*
Ga0102829_117024123300009026EstuarineMKEYKYNSYAEAQAALDIVNIFFCLPCGEDCLTWTEIQVGDGYWFLKGDRLEEVL*
Ga0105097_1000046233300009169Freshwater SedimentMDIIGYKYNTLEEAEIALGQASAYFNLPCGETLRWTDIQEGNGFWYLAGEGVEEVLGEPVIIEIYDNN*
Ga0105097_1000686133300009169Freshwater SedimentMYIYNTLEEAQAALEIVNAYFGLPCGETLRWTDIQEGDGFWYLQADRLEEVLGNE*
Ga0105097_10007109123300009169Freshwater SedimentMEYKYNTLEEAQTALDIVNAYFGLPCGEDCLTWTEIQEGDGYWFLQADRLEEVLGNE*
Ga0105097_1004068933300009169Freshwater SedimentMVEYKYNTYAEAKTALDTINDYFGLPCGDDCLTWTEIQEGEGYWFLQADRLDEIL*
Ga0105097_1012204533300009169Freshwater SedimentLENLLIMYKYNTLEEAQASLDTVNAYFGLPCGETLNWTNIQEGDGYWFLQADRLEEVL*
Ga0105097_1018065423300009169Freshwater SedimentMYIYNTLEEAQSALDTVNAYFGLPCAESLRCADIEEGDGFWYMSAFRLEEALGDPVEIEIIE*
Ga0105097_1021984323300009169Freshwater SedimentMVYKYNTYEEAQTALNIVNAYFGLPCGETLNWTNIEEGDGFWYLSADRLEEVLGQPIEL*
Ga0105097_1022424023300009169Freshwater SedimentMEYRYNTLEEAQVALDTVNAYFGLPCGEDCLTWTEIQEGDGFWYLQADRLEEVLGNE*
Ga0105097_1085762123300009169Freshwater SedimentMYTYNTLEEAQAALDIVNAYFGLPCGETLNWTEIQQGDGYWFLEADRLEEVLGNE*
Ga0114974_10006165103300009183Freshwater LakeMVGYIYNTLEEAEISLEIVNNYFELPCGETLNWTDIQEGNGFWYLSADRLEEVLGEPLVIEL*
Ga0114982_115858523300009419Deep SubsurfaceMVILGYKYDTLEEAEASLEIVNAYFELPSGETLNWTDIQEGNGFWYMSADRLEEVLGVPVIIEL*
Ga0153801_101931313300012017FreshwaterMEEYRYNTYEEAQTALDTVNAYFELPSGGTLTWTEIQEGDGYWFLQAERLEEVLG*
Ga0157498_102319913300012666Freshwater, Surface IceMEEYRYNTYAEAQTALDTVNAYFELPSGGTLTWTEIQEGDGYWFLQAERLEEVLG*
Ga0157498_106599313300012666Freshwater, Surface IceMVGYKYNTLEEAEASLEIVNTFFGLPCGDDCLRWTDIQEGNGFWYLSAERLEEVLGEPVE
Ga0177922_1015337423300013372FreshwaterMVGYKYNTLEEAEASLEIVNTFFGLPCGDDCLRWTDIQEGNGFWYLSAERLEEVLGDPVEIEL*
Ga0177922_1039527823300013372FreshwaterMEYKYNTYAEAQTALDTVNAYFGLPCGDDCLTWTDIQEGDGYWFLQADRLDEVLG*
Ga0177922_1110509523300013372FreshwaterMEEYRYNTYEEAQSALDTVNAYFGLPCGDDCLTWTEIQRGEDYWFLQADRLDEVLGQPAES*
Ga0181347_110491013300017722Freshwater LakeMILGYKYNTLEEAEASLEIVNTYFGLPCGDDCLNWTIIQEGNGFWFMSADRLEEVLGEPVEISE
Ga0181356_109329123300017761Freshwater LakeMILGYKYNTLEEAQASLEIVNTYFGLPCGDDCLIWTDIQEGNGFWFMSADRLDEVLGEPVEIEIEIETEI
Ga0181349_101324343300017778Freshwater LakeMEIYKYNTLEEAEIALEQVNTYFGLPSGNTLRWTDIEQYQDFWYLSGDRINEVLGEPTIFEMPE
Ga0181349_103631053300017778Freshwater LakeMKEYRYNTYEEAEIALETVNTFFGLPCGEDCLKWTEIQEGDGYWYLQADRLEEILG
Ga0181346_117839513300017780Freshwater LakeMVGYIYNTLEEAEASLEIVNTFFGLPCGDDCLRWTDIQEGNGFWYLSAERLDEVLGEPVEIEL
Ga0181346_125592223300017780Freshwater LakeMEEYRYNTYEEAQSALDTVNTYFGLPCGVTLTWTSIEEGYGYWYLKADRLDEVLG
Ga0181348_108583123300017784Freshwater LakeMEYKYNTYEEAQAALDTVNAYFGLPCGDDCLTWTEIQRGEDYWFLQADRLDEVL
Ga0181348_118471923300017784Freshwater LakeMEKYIFSTYEEAQTALNTVNTYFGLPCGETLNWTDIQEGDEFWFLEADRLGEVLG
Ga0181359_105383053300019784Freshwater LakeMVEYKYNTYAEAQAALDIVNIYFKLPFGEDSYTWTEIQVGDGYWFLKGDRLEEVL
Ga0207934_101013423300020561FreshwaterMEYKYNTLEEAQTALDTVNAYFGLPCGDDCLTWTDIQEGDGYWFLQADRLEEVLG
Ga0222712_1002313863300021963Estuarine WaterMIGYIYNTLEEAEIALEIVNTFFGLPCGETLRWTDIQEGNGFWYLSADRLEEVLGEPVTIEI
Ga0181351_101685723300022407Freshwater LakeMEIYKYNTLEEAEIALEQVNTYFGLPSGNTLRWTDIEQYQDFWYLSGDRINEVLGEPIIFEMPE
Ga0181351_113034313300022407Freshwater LakeEEAEIALETVNTFFGLPCGEDCLKWTEIQEGDGYWYLQADRLEEILG
Ga0212119_102661633300022543FreshwaterYKYNTLEEAEASLEIVNTYFGLPCGEDCLRWTDIEEGDGFWYLSAERLEEVLGEPVIIIL
Ga0208916_1001641653300025896AqueousMVEYKYNTYAEAKTALDTVNAYFGLPCGDDCLTWTEIQEGEGYWFLSADRLNEILGE
Ga0208926_102969723300027205EstuarineMEKYIYNTLEEAQTSLEIVNTFFGLPCGETLNWTNIQEGDGYWFLQADRLDEVLGEPVEL
Ga0208974_108587733300027608Freshwater LenticMDYKYNTYEEAQTVLDTVNAYFGLPCGETLTWTEVQEGDGYWFLQADRLEEVLGQPIEL
Ga0208951_102248063300027621Freshwater LenticMEKYIFNTYEEAQTALNTVNSYFGLPCGETLNWTDIQEGDGFWYLEADRLDEVLG
Ga0208951_102522223300027621Freshwater LenticMILGYKYNTLEEAEASLEIVNTYFGLPCGEDCLRWTDVEEGDGFWYLSAERLEEVLGEPVIIIL
Ga0209599_1011835923300027710Deep SubsurfaceMVILGYKYDTLEEAEASLEIVNAYFELPSGETLNWTDIQEGNGFWYMSADRLEEVLGVPVIIEL
Ga0209492_100090623300027721Freshwater SedimentMDIIGYKYNTLEEAEIALGQASAYFNLPCGETLRWTDIQEGNGFWYLAGEGVEEVLGEPVIIEIYDNN
Ga0209492_1003651133300027721Freshwater SedimentMYIYNTLEEAQAALEIVNAYFGLPCGETLRWTDIQEGDGFWYLQADRLEEVLGNE
Ga0209492_102831843300027721Freshwater SedimentMEYKYNTLEEAQTALDIVNAYFGLPCGEDCLTWTEIQEGDGYWFLQADRLEEVLGNE
Ga0209492_117016223300027721Freshwater SedimentMVEYKYNTYAEAKTALDTINDYFGLPCGDDCLTWTEIQEGEGYWFLQADRLDEIL
Ga0209442_100289973300027732Freshwater LakeLDNILTMEEYRYNTYEEAQVALDTVNAYFGLPCGETLNWTSIEEGDGYWYLKADRLDEVL
Ga0209442_131345223300027732Freshwater LakeMVEYKYNTYEEAQTALDTVNVYFGLPCGDDCLTWTEIQRGEGYWFLQADRLEEVLGEPIEIEL
Ga0209355_100706873300027744Freshwater LakeMKEYKYNTYTEAQAALDIVNNFFGLPCGNDCLTWTDIQVGDGYWFLQADRLEEIL
Ga0209134_1013253523300027764Freshwater LakeMYKYNTLEEAETSLEIVNTYFGLPCGETLNWTDIQEGEGFWFLQADRLEEVLGEPI
Ga0209768_1029794623300027772Freshwater LakeMVGYKYNTLEEAEIALEQANEYFKLPCDGTLRWTDIQEIDGFWYLAGEGAEEVLGEPVIIEVI
Ga0209246_1000225353300027785Freshwater LakeMVEYRYNTLEEAQSALDTVNAYFGLPCGETLTWTKVKIGDGYWFLEADRLEEVLGEPVELXVKKI
Ga0209246_1014172023300027785Freshwater LakeMNNIVYKYNTYEEAQGALDTVNAYFGLPCGDDCLTWTDIQRGEDYWFLQADRLDEVL
Ga0209246_1016392633300027785Freshwater LakeMILGYKYNTLEEAEASLEIVNTYFGLPCGEDCLRWTDVEEGDGFWYLFAERLEEVLGEPVIIEINR
Ga0209246_1019564123300027785Freshwater LakeMEYKYNSLEEAQTALNTVNAYFGLPCGEDCLTWTDIQEGDGYWFLEADRLGEVLG
Ga0315291_1081769523300031707SedimentMEEYRYNTYEEAQSALDTVNAYFGLPCGDDCLTWTEIQEGDGYWFLQADRLEEVLG
Ga0315272_1031348333300032018SedimentMVYKYYTLEEAEIALEQVNTYFGLPCGDTTNWTDIQEENGYWFLQADRLEEIL
Ga0315284_1073119943300032053SedimentMKEYKYNSYAEAQSALDIVNIFFGLPCGEDCLTWTDIQVGDDYWFLQAERLEEVL
Ga0315270_1031423913300032275SedimentQTALDTVNAYFGLPCGDDCLTWTEIQEGDGYWFLQADRLDEVLN
Ga0334989_0007431_4908_51023300033984FreshwaterMILGYKYDTLEEAEASLEIVNTYFGLPCGEDCLRWTDVQEGNGFWYLSAERLEEVLGEPVIIIL
Ga0334989_0016388_2518_27003300033984FreshwaterMVEYIYNTYEEAQTALDTVNAYFELPSGGTLTWTEIQQGDGYWFLQADRLDEVLGEPVEL
Ga0334989_0029799_1779_19463300033984FreshwaterMEKYIFNTYEEAQTALNTVNAYFGLPCGETLNWTDIQEGDGFWFLESDRLGEVLG
Ga0334989_0056131_1103_12733300033984FreshwaterMYIYNTLEEAQAALDIVNAYFGLPCGETLNWTNIEEADGFWYLQADRLEEVLGEPV
Ga0334989_0276588_428_6223300033984FreshwaterMVLGYKYDTLEEAEASLEIVNTYFGLPCGEDCLRWTDVEEGDGFWYLSAERLEEVLGEPVIIIL
Ga0335003_0007430_922_11223300033995FreshwaterMVKMGFKYNTLEEAQAALEMANTFFGLPCAESLRCADIEEGDGFWYMSAFRLEEALGDPVEIEIIE
Ga0335003_0010112_2475_26453300033995FreshwaterMYKYDTLEEAEASLEIVNTYFGLPCGETLNWTDIQEGDGYWFLQAERLEEVLGEPV
Ga0335003_0014651_2267_24313300033995FreshwaterMVEYKYNTLEEAQAALEIVNAYFGLPCGETLRWTDIQEGDGFWYLQADRLDEVL
Ga0335003_0023010_2581_27483300033995FreshwaterMEKYIYNTLEEAQSALDTINAYFGLPCGETLNWTDIQEGDGYWYLQADRLEEVLG
Ga0335003_0129923_1072_12333300033995FreshwaterMYIYNTLEEAQAALEIVNAYFGLPCGETLRWTDIQEGDGFWYLESDRLEEVLG
Ga0335003_0214363_109_2673300033995FreshwaterMYKYNTYEEAQTSLEIVNTFFGLPCGETLNWTDIQEGDGYWFLQADRLEEVL
Ga0334983_0109876_3_1913300034060FreshwaterDIIEYRYNTLEEAQTAIDTVNAYFGLPCGDDCLTWTDIQEGDGYWFLQADRLEEVLGPPTEI
Ga0335001_0005800_3365_35563300034064FreshwaterMDIIEYRYNTLEEAQTALDTVNAYFGLPCGDDCLTWTDIQEGDGYWFLQADRLEEVLGPPTEI
Ga0335001_0041526_217_3843300034064FreshwaterMEEYRYNTYAEAQTALDTVNAYFELPSGGTLTWTDIQEGDGYWFLQAERLEEVLG
Ga0335001_0079049_1421_15913300034064FreshwaterMYRYNTLEEAQSALDTVNAYFGLPCGETLTWTEVQEGDGYYFLQADRLEEVLGEPV
Ga0335001_0128468_16_1833300034064FreshwaterMYKYNTLEEAQAALEIVNAYFGLPCGETLNWTDIQEGEGFWYLQADRLEEVLGNE
Ga0335012_0233791_26_1843300034093FreshwaterMYKYNTLEEAQASLEIVNTFFGLPCGETLNWTDIQEGDGYWFLQADRLEEVL
Ga0335035_0023059_2149_23223300034105FreshwaterMVYKYNTLEEAQSALDTVNAYFGLPCGDDCLTWTDIQLGDGYWFLQADRLEEALGYE
Ga0335035_0029143_3305_34873300034105FreshwaterMEYKYNTLEEAQTALDTVNAYFGLPCGDDCLTWTDVQEGDGYWFLQADRLEEVLGPPTEI
Ga0335035_0032578_1629_17993300034105FreshwaterMEYRYNTLEEAQAALDTVNAYFGLPCGDDCLTWTDIQIGDGYWFLQADRLEEVLSE
Ga0335035_0034830_1920_20813300034105FreshwaterMYTYNTLEEAQAALDTVNAYFGLPCGETLNWTNIEEADGFWYLQADRLEEVLG
Ga0335035_0103495_1061_12253300034105FreshwaterMEYKYNTLEEAQIALDTVNAYFGLPCGDDCLTWTDIQEGDGYWFLQADRLEEVL
Ga0335035_0139164_955_11493300034105FreshwaterMVLGYKYDTLEEAEASLEIVNTYFGLPCGDDCLRWTDIEEGDGFWYLSAERLEEVLGEPVIIIL
Ga0335035_0168761_3_1403300034105FreshwaterEEAQTALDTVNAYFELPSGGTLTWTEIQEGDGYWFLQADRLEEVL
Ga0335035_0191883_988_11703300034105FreshwaterMYIYNTLEEAQAALEIVNTYFGLPCGETLRWTDIEEGDGFWYLSAERLEEVLGEPVEIEL
Ga0335035_0229463_856_10263300034105FreshwaterMYIYNTLEEAQAALEIVNAYFGLPCGETLNWTNIEEGDGFWYLQADRLEEVLGEPV
Ga0335035_0664744_293_4663300034105FreshwaterMEEYRYNTYEEAQTALDTVNAYFELPSGGTLTWTEIQEGDGYWFLQADRLEETLNYE
Ga0335017_0000097_28420_286023300034167FreshwaterMVEYKYNTLEEAQASLDTVNAYFGLPCGETLNWTNIQEGDGYWFLQADRLEEVLGNPVEL
Ga0335017_0005401_4156_43263300034167FreshwaterMYKYNTLEEAQAALDTVNAYFGLPCGETLNWTNIEEGDGFWYLSADRLEEVLGNPV
Ga0335061_0235541_82_2523300034168FreshwaterMVYKYNTLEEAQAALDTVNAYFGLPCGDDCLTWTEIQEGDGYWFLQADRLDEVLSE
Ga0335064_0249998_971_11263300034357FreshwaterTYNTLEEAQAALEIVNAYFGLPCGETLNWTNIEEGEGFWYLQADRLYEVLG


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