Metagenome / Metatranscriptome Family F099256

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099256
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	61 residues
Representative Sequence	MSSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Number of Associated Samples	94
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	64.08 %
% of genes near scaffold ends (potentially truncated)	44.66 %
% of genes from short scaffolds (< 2000 bps)	89.32 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (28.155 % of family members)
Environment Ontology (ENVO)	Unclassified (26.214 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.689 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 93.33% β-sheet: 0.00% Coil/Unstructured: 6.67%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13193	AMP-binding_C	45.63
PF01266	DAO	43.69
PF03401	TctC	0.97
PF03707	MHYT	0.97
PF06964	Alpha-L-AF_C	0.97
PF00107	ADH_zinc_N	0.97
PF00126	HTH_1	0.97
PF13602	ADH_zinc_N_2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.97
COG3300	MHYT domain, NO-binding membrane sensor	Signal transduction mechanisms [T]	0.97
COG3534	Alpha-L-arabinofuranosidase	Carbohydrate transport and metabolism [G]	0.97
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	50.49 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	49.51 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.97 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.97 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.94 %
Alphaproteobacteria bacterium PA3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	0.97 %
unclassified Rhodocyclales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → unclassified Rhodocyclales	0.97 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.97 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Azorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium	1.94 %
Rhodocyclales bacterium GT-UBC	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → unclassified Rhodocyclales → Rhodocyclales bacterium GT-UBC	0.97 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.97 %
Alphaproteobacteria bacterium PA3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	0.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.97 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Azorhizobium doebereinerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium doebereinerae	1.94 %
Rhodocyclales bacterium GT-UBC	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → unclassified Rhodocyclales → Rhodocyclales bacterium GT-UBC	0.97 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.97 %
Alphaproteobacteria bacterium PA3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	0.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.97 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2001200001\|2001220635	All Organisms → cellular organisms → Bacteria → Proteobacteria	1140	Open in IMG/M
2170459002\|F0B48LX02I9MWY	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
2170459015\|G14TP7Y01EMFUA	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300002568\|C688J35102_118345927	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300002568\|C688J35102_118887304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300002568\|C688J35102_120504401	All Organisms → cellular organisms → Bacteria → Proteobacteria	1125	Open in IMG/M
3300004479\|Ga0062595_100562596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	877	Open in IMG/M
3300004479\|Ga0062595_101490996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	623	Open in IMG/M
3300005093\|Ga0062594_101038818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	793	Open in IMG/M
3300005162\|Ga0066814_10082321	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300005354\|Ga0070675_100611717	All Organisms → cellular organisms → Bacteria → Proteobacteria	989	Open in IMG/M
3300005354\|Ga0070675_101796904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	565	Open in IMG/M
3300005438\|Ga0070701_10767622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	655	Open in IMG/M
3300005444\|Ga0070694_101547488	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300005543\|Ga0070672_100498246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1053	Open in IMG/M
3300005577\|Ga0068857_101577494	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300006038\|Ga0075365_10705318	All Organisms → cellular organisms → Bacteria → Proteobacteria	713	Open in IMG/M
3300006038\|Ga0075365_10741991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	693	Open in IMG/M
3300006038\|Ga0075365_11071555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	567	Open in IMG/M
3300006048\|Ga0075363_100853105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	556	Open in IMG/M
3300006575\|Ga0074053_11566583	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300006581\|Ga0074048_13488195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	500	Open in IMG/M
3300006604\|Ga0074060_12011629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	591	Open in IMG/M
3300006871\|Ga0075434_100449553	All Organisms → cellular organisms → Bacteria → Proteobacteria	1310	Open in IMG/M
3300007076\|Ga0075435_100531036	All Organisms → cellular organisms → Bacteria → Proteobacteria	1018	Open in IMG/M
3300009101\|Ga0105247_10938433	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300009143\|Ga0099792_10269441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	999	Open in IMG/M
3300009148\|Ga0105243_10360723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1337	Open in IMG/M
3300009156\|Ga0111538_11485970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	854	Open in IMG/M
3300009162\|Ga0075423_11189533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	813	Open in IMG/M
3300010396\|Ga0134126_11556944	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300010400\|Ga0134122_11519253	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300011000\|Ga0138513_100002182	All Organisms → cellular organisms → Bacteria → Proteobacteria	1899	Open in IMG/M
3300011119\|Ga0105246_10456553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1075	Open in IMG/M
3300012212\|Ga0150985_110758245	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
3300012910\|Ga0157308_10290982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	594	Open in IMG/M
3300012924\|Ga0137413_11204777	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300012937\|Ga0162653_100043675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	680	Open in IMG/M
3300012939\|Ga0162650_100018712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	978	Open in IMG/M
3300012958\|Ga0164299_11030572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300012961\|Ga0164302_11829083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	514	Open in IMG/M
3300012986\|Ga0164304_10168064	All Organisms → cellular organisms → Bacteria → Proteobacteria	1400	Open in IMG/M
3300012987\|Ga0164307_11045799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	667	Open in IMG/M
3300013306\|Ga0163162_11493059	All Organisms → cellular organisms → Bacteria → Proteobacteria	770	Open in IMG/M
3300015242\|Ga0137412_10127074	All Organisms → cellular organisms → Bacteria → Proteobacteria	2064	Open in IMG/M
3300015371\|Ga0132258_10206636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4766	Open in IMG/M
3300015374\|Ga0132255_102819587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	743	Open in IMG/M
3300018027\|Ga0184605_10003032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium doebereinerae	5749	Open in IMG/M
3300018031\|Ga0184634_10136615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1093	Open in IMG/M
3300018051\|Ga0184620_10025574	All Organisms → cellular organisms → Bacteria → Proteobacteria	1509	Open in IMG/M
3300018054\|Ga0184621_10055378	All Organisms → cellular organisms → Bacteria → Proteobacteria	1335	Open in IMG/M
3300018055\|Ga0184616_10118363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	958	Open in IMG/M
3300018061\|Ga0184619_10464159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	563	Open in IMG/M
3300018066\|Ga0184617_1019001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1502	Open in IMG/M
3300018073\|Ga0184624_10118564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1145	Open in IMG/M
3300018076\|Ga0184609_10500465	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300018083\|Ga0184628_10035594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2492	Open in IMG/M
3300019356\|Ga0173481_10258937	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300019361\|Ga0173482_10041716	All Organisms → cellular organisms → Bacteria → Proteobacteria	1447	Open in IMG/M
3300019886\|Ga0193727_1195495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	509	Open in IMG/M
3300019887\|Ga0193729_1266767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	530	Open in IMG/M
3300019890\|Ga0193728_1163682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	967	Open in IMG/M
3300020002\|Ga0193730_1010432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium doebereinerae	2630	Open in IMG/M
3300021078\|Ga0210381_10380319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → unclassified Rhodocyclales → Rhodocyclales bacterium GT-UBC	519	Open in IMG/M
3300021080\|Ga0210382_10023272	All Organisms → cellular organisms → Bacteria → Proteobacteria	2261	Open in IMG/M
3300022694\|Ga0222623_10359831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	555	Open in IMG/M
3300025899\|Ga0207642_10762558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	613	Open in IMG/M
3300025914\|Ga0207671_11355119	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300025926\|Ga0207659_10109880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2094	Open in IMG/M
3300025942\|Ga0207689_11561870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	550	Open in IMG/M
3300025960\|Ga0207651_10619336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	948	Open in IMG/M
3300026078\|Ga0207702_11402900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	692	Open in IMG/M
3300026088\|Ga0207641_11033373	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
3300026557\|Ga0179587_10973729	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M
3300027181\|Ga0208997_1049833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	622	Open in IMG/M
3300027383\|Ga0209213_1006631	All Organisms → cellular organisms → Bacteria → Proteobacteria	2047	Open in IMG/M
3300027663\|Ga0208990_1021961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2073	Open in IMG/M
3300028608\|Ga0247819_10599473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	663	Open in IMG/M
3300028719\|Ga0307301_10031332	All Organisms → cellular organisms → Bacteria → Proteobacteria	1594	Open in IMG/M
3300028721\|Ga0307315_10047087	All Organisms → cellular organisms → Bacteria → Proteobacteria	1193	Open in IMG/M
3300028754\|Ga0307297_10168790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	754	Open in IMG/M
3300028787\|Ga0307323_10018094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2391	Open in IMG/M
3300028790\|Ga0307283_10057884	All Organisms → cellular organisms → Bacteria → Proteobacteria	939	Open in IMG/M
3300028790\|Ga0307283_10226392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	543	Open in IMG/M
3300028791\|Ga0307290_10047112	All Organisms → cellular organisms → Bacteria → Proteobacteria	1550	Open in IMG/M
3300028793\|Ga0307299_10269445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	640	Open in IMG/M
3300028796\|Ga0307287_10238200	All Organisms → cellular organisms → Bacteria → Proteobacteria	689	Open in IMG/M
3300028799\|Ga0307284_10060971	All Organisms → cellular organisms → Bacteria → Proteobacteria	1347	Open in IMG/M
3300028803\|Ga0307281_10094439	All Organisms → cellular organisms → Bacteria → Proteobacteria	999	Open in IMG/M
3300028809\|Ga0247824_10775319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	590	Open in IMG/M
3300028819\|Ga0307296_10263819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	937	Open in IMG/M
3300028819\|Ga0307296_10412124	All Organisms → cellular organisms → Bacteria → Proteobacteria	738	Open in IMG/M
3300028872\|Ga0307314_10263745	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300028875\|Ga0307289_10077093	All Organisms → cellular organisms → Bacteria → Proteobacteria	1348	Open in IMG/M
3300028875\|Ga0307289_10158236	All Organisms → cellular organisms → Bacteria → Proteobacteria	931	Open in IMG/M
3300028876\|Ga0307286_10403451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	513	Open in IMG/M
3300028885\|Ga0307304_10258774	All Organisms → cellular organisms → Bacteria → Proteobacteria	760	Open in IMG/M
3300031740\|Ga0307468_100310992	All Organisms → cellular organisms → Bacteria → Proteobacteria	1150	Open in IMG/M
3300032013\|Ga0310906_11001598	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300032205\|Ga0307472_102403538	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300033550\|Ga0247829_11094874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	661	Open in IMG/M
3300033551\|Ga0247830_10702636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	803	Open in IMG/M
3300034149\|Ga0364929_0008270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2813	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.79%
Host-Associated	Host-Associated	25.24%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.17%
Plants	Host-Associated → Plants	25.24%
Aquatic	Environmental → Aquatic	12.62%
Solid Waste	Engineered → Solid Waste	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.62%
Sediment	Environmental → Aquatic → Sediment	10.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.74%
Roots	Host-Associated → Plants → Roots	3.88%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.91%
Freshwater	Environmental → Aquatic → Freshwater	1.94%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%
Grass	Engineered → Solid Waste → Grass	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.68%
Loam	Environmental → Terrestrial → Soil → Loam	7.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.85%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	3.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.91%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.88%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	3.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	28.16%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	9.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.88%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	3.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.91%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2001200001	Soil microbial communities from Waseca County, Minnesota, USA - Sample 10150	Environmental	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027181	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2001241267	2001200001	Soil	MSSATLLTAAVILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
E1_05275080	2170459002	Grass Soil	EGPMSSATLLTAAVILTLIAVYQWAARLGVLGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
4PV_03020930	2170459015	Switchgrass, Maize And Mischanthus Litter	MSSATLLTAAVILTVIAIYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
C688J35102_1183459272	3300002568	Soil	ATLLTAAVILTIIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
C688J35102_1188873041	3300002568	Soil	MSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
C688J35102_1205044012	3300002568	Soil	MSSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0062595_1005625961	3300004479	Soil	MSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLPWLSA
Ga0062595_1014909962	3300004479	Soil	MSSATLLTAAVILTVIAVYQWAARLGALGAAQMDLMTRYCQGTLGVTALAVGCWLAWLSA
Ga0062594_1010388182	3300005093	Soil	VSSATLLTAAVILTIIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAIGCWLAWLSA
Ga0066814_100823212	3300005162	Soil	NEGPMSSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0070675_1006117172	3300005354	Miscanthus Rhizosphere	SHPVEGSEQGRIRPVGNECPMSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0070675_1017969041	3300005354	Miscanthus Rhizosphere	MSSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWL
Ga0070701_107676222	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCW
Ga0070694_1015474881	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SATLLTAAVILTIIAIYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0070672_1004982461	3300005543	Miscanthus Rhizosphere	MSSATLLTAAVILTLIAVYQWAARLGVLGAAQMDLMTRYWQGALGVTALAV
Ga0068857_1015774941	3300005577	Corn Rhizosphere	SATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0075365_107053182	3300006038	Populus Endosphere	MSSTTLLTAAVILSVIAVYQWAARLGALGAAQRDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0075365_107419911	3300006038	Populus Endosphere	MSSATLLTAAVILTIIAIYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLARGNLTTG*
Ga0075365_110715552	3300006038	Populus Endosphere	MSSATLLTAAIILTIIAVYQWAARLGTLGAAQMDLMTRYWQGALGVTALA
Ga0075363_1008531052	3300006048	Populus Endosphere	MSSTTLLTAAVILSVIAVYQWAARLGALGAAQRDLMTRYWQGALGVTALAVGC
Ga0074053_115665832	3300006575	Soil	TGASPAGWKMPMSSTTLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLTV*
Ga0074048_134881952	3300006581	Soil	MSSTTLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGITALAA
Ga0074060_120116292	3300006604	Soil	MSSTTLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQSVLGITALAAGSWLAWLTV
Ga0075434_1004495532	3300006871	Populus Rhizosphere	ECPMSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0075435_1005310362	3300007076	Populus Rhizosphere	MSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCRLAWLSA
Ga0105247_109384332	3300009101	Switchgrass Rhizosphere	MSSATLLTAAIVLTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0099792_102694412	3300009143	Vadose Zone Soil	MAPTGPSPAGWKMPMSSTTLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGTTARAAGSWLAWLTV*
Ga0105243_103607231	3300009148	Miscanthus Rhizosphere	MSSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAIGCWLAWLSA
Ga0111538_114859701	3300009156	Populus Rhizosphere	MSSATLLTAAIILTVIAIYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0075423_111895331	3300009162	Populus Rhizosphere	MSSATLLTAAIILTVIAVYQLAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0134126_115569442	3300010396	Terrestrial Soil	SSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0134122_115192532	3300010400	Terrestrial Soil	ILTLIAVYQWAARLGVLGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0138513_1000021823	3300011000	Soil	MPMSSTTLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLTV*
Ga0105246_104565531	3300011119	Miscanthus Rhizosphere	MSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAIGCWLAWLSA
Ga0150985_1107582452	3300012212	Avena Fatua Rhizosphere	ATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0157308_102909822	3300012910	Soil	MSSATLLTAAVILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLS
Ga0137413_112047772	3300012924	Vadose Zone Soil	LTVAIILTLVAVYQWTARLGALGVAQMELMARYWQGVLGITALAAGSWLAWLTV*
Ga0162653_1000436752	3300012937	Soil	MSSATPLTAAVILTIIAIYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0162650_1000187121	3300012939	Soil	MSSATLLTAAVILTIIAIYQWAARLGALGAAQMDLMTRYWQGALGGTALAVGCWLAWLSA
Ga0164299_110305722	3300012958	Soil	MSSATLLTSAIILTLIAVYQWAARLGTLGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0164302_118290831	3300012961	Soil	MSSATLLTAAVILTLIAVYQWAARLGVLGAAQMDLMTRYWQGALGVTALAVGCW
Ga0164304_101680641	3300012986	Soil	IILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0164307_110457992	3300012987	Soil	MSSATLLTAAIILTLVAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0163162_114930591	3300013306	Switchgrass Rhizosphere	RREGPMSSATLLTAAVILTLIAVYQWAARLGVLGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA*
Ga0137412_101270743	3300015242	Vadose Zone Soil	MARTGASSAGWEMPMSSATLLTVAIILTLVAVYQWTARLGALGVAQMELMARYWQGVLGITALAAGSWLAWLTV*
Ga0132258_102066365	3300015371	Arabidopsis Rhizosphere	MSSATLLTAAIILTLIGVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0132255_1028195871	3300015374	Arabidopsis Rhizosphere	MSSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYRQGALGVTALAVGCWLAWLSA
Ga0184605_100030322	3300018027	Groundwater Sediment	MSSATLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0184634_101366151	3300018031	Groundwater Sediment	MSSTTLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLTV
Ga0184620_100255741	3300018051	Groundwater Sediment	TLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGTTALAAGSWLAWLTV
Ga0184621_100553782	3300018054	Groundwater Sediment	MSSATLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGTTALAAGSWLAWLSV
Ga0184616_101183631	3300018055	Groundwater Sediment	MSSATLLTAAVILTIIAIYQWAARLGALGAAQMDLMTRYWQGALGVTALAVG
Ga0184619_104641591	3300018061	Groundwater Sediment	MSSATLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLTV
Ga0184617_10190012	3300018066	Groundwater Sediment	MSSATLLTVAIILTLVAVYQWTARLGMLGVAQMELMARYWQGVLGTTALAAGSWLAWLTV
Ga0184624_101185642	3300018073	Groundwater Sediment	MSSATLLTAAVILTIIAIYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0184609_105004651	3300018076	Groundwater Sediment	MSSATLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGTTALAAGSWLAWLTV
Ga0184628_100355942	3300018083	Groundwater Sediment	MSSATLLTAAVILTIIAIYQWAARLGAMGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0173481_102589372	3300019356	Soil	MSSATLLTAAVILTLIAVYQWAARLGVLGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0173482_100417162	3300019361	Soil	MSSTTLLTAAVILSIIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0193727_11954952	3300019886	Soil	MSSATLLTVAIILTLVAVYQWAARLGVLGVAQMELMARYWQGVLGTTALAAGSWLAWFTV
Ga0193729_12667671	3300019887	Soil	MSSATLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGTTALAAGSWLAWLSV
Ga0193728_11636821	3300019890	Soil	MSSTTLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGTTALAAGSWLAWLTV
Ga0193730_10104323	3300020002	Soil	MSSATLLTVAIILTLVAVYQWTARLGALGVAQMELMARYWQGVLGTTALAAGSWLAWLTV
Ga0210381_103803191	3300021078	Groundwater Sediment	MVPTGASSAGWEMPMSSATLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0210382_100232722	3300021080	Groundwater Sediment	MSSATLLTVAIILTLVAVYQWTARLGALGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0222623_103598312	3300022694	Groundwater Sediment	MSSATLLTVAIILTLVAVYQWTARLGMLGVAQMELMARYWQGVLGTTALAAGSWLAWLT
Ga0207642_107625582	3300025899	Miscanthus Rhizosphere	MSSARLLTAAVILTIIAIYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0207671_113551191	3300025914	Corn Rhizosphere	EPGRIRPVGNECPMSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0207659_101098802	3300025926	Miscanthus Rhizosphere	MSSATLLTAAVILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0207689_115618701	3300025942	Miscanthus Rhizosphere	MSSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCW
Ga0207651_106193362	3300025960	Switchgrass Rhizosphere	MSSATLLTSAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0207702_114029002	3300026078	Corn Rhizosphere	MSSATLLTAAVILTIIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0207641_110333732	3300026088	Switchgrass Rhizosphere	RPVENECPMSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0179587_109737292	3300026557	Vadose Zone Soil	MAPIGASSAGWEMPMSSATLLTVAIILTLVAVYQWTARLGALGVAQMELMARYWQGVLGITALAAGFWLAWLTV
Ga0208997_10498332	3300027181	Forest Soil	MSSATLLTVAVILTLVAAYQWTARLGALGVAQMELMTRYWQGVLGITALAAGFWL
Ga0209213_10066312	3300027383	Forest Soil	MSSATLLTVAVILTLVAAYQWTARLGALGVAQMELMTRYWQGVLGITALAAGFWLAWLTV
Ga0208990_10219612	3300027663	Forest Soil	MSSATLLTVAVILTLVAAYQWTARLGALGVAQMELMTRYWQGVLGITALAAGSWLAWLTV
Ga0247819_105994732	3300028608	Soil	MSSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLA
Ga0307301_100313322	3300028719	Soil	WKMPMSSTTLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLTV
Ga0307315_100470871	3300028721	Soil	ASPAGWKMPMSSTTLLTVAIILTLVAVYQWTARLGALGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0307297_101687901	3300028754	Soil	MSSTTLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0307323_100180941	3300028787	Soil	RMAPTGASSAGWEMPMSSTTLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLTV
Ga0307283_100578841	3300028790	Soil	AIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0307283_102263922	3300028790	Soil	MSSTTLLTVAIILTLVAVYQWTARLGALGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0307290_100471121	3300028791	Soil	MAPTGASSAGWEMPMSSATLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0307299_102694451	3300028793	Soil	MSSTTLLTAAIILTLIAVYQWAARLGVLGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0307287_102382001	3300028796	Soil	RRMVPTGASSAGWEMPMSSATLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0307284_100609712	3300028799	Soil	EMPMSSATLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0307281_100944391	3300028803	Soil	LTAAITLTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0247824_107753191	3300028809	Soil	MPSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0307296_102638192	3300028819	Soil	MSSTTLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLSV
Ga0307296_104121241	3300028819	Soil	GWEMPMSSATLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGTTALAAGSWLAWLSV
Ga0307314_102637451	3300028872	Soil	RMVPTGASSAGWEMPMSSATLLTVAIILTLVAVYQWTARLGVLGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0307289_100770932	3300028875	Soil	APTGASSAGWEMPMSSTTLLTVAIILTLVAVYQWTARLGALGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0307289_101582362	3300028875	Soil	AGWKMPMSSTTLLTVAIILTLVAVYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLTV
Ga0307286_104034511	3300028876	Soil	MSSTTLLTVAIILTLVAIYQWTARLGVLGVAQMELMARYWQGVLGITALAAGSWLAWLTV
Ga0307304_102587741	3300028885	Soil	RREGPMSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0307468_1003109921	3300031740	Hardwood Forest Soil	MSSTTLLTVAIILTLVAAYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLSV
Ga0310906_110015981	3300032013	Soil	VEGSEPGRIRPVENECPMSSATLLTAAIILTVIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA
Ga0307472_1024035382	3300032205	Hardwood Forest Soil	MSSTTLLTVAIILTLVAAYQWTARLGALGVAQMQLMARYWQGVLGITALAAGSWLAWLTV
Ga0247829_110948741	3300033550	Soil	MSSATLLTAAIILTLIAVYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWL
Ga0247830_107026361	3300033551	Soil	MSSATLLTAAIILTVIAIYQWAARLGALGAAQMDLMTRYWQGALGVTA
Ga0364929_0008270_2257_2439	3300034149	Sediment	MSSATLLTAAVILTIITIYQWAARLGALGAAQMDLMTRYWQGALGVTALAVGCWLAWLSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099256

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences