Metagenome / Metatranscriptome Family F099254

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099254
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	59 residues
Representative Sequence	ELADLARLHARMLLDRGDPGDHARAAEMLQEALSAYRTFGMPAYAAEAERLQRQALA
Number of Associated Samples	87
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.26 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.961 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (42.718 % of family members)
Environment Ontology (ENVO)	Unclassified (41.748 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.427 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
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SCOP family	SCOP domain	Representative PDB	TM-score
a.118.8.9: TPR-like	d3txna1	3txn	0.83
a.118.8.9: TPR-like	d3txna1	3txn	0.83
a.118.8.1: TPR-like	d1qqea_	1qqe	0.82
a.118.8.0: TPR-like	d6kp3a_	6kp3	0.82
a.118.8.1: TPR-like	d1qqea_	1qqe	0.82
a.118.8.0: TPR-like	d6kp3a_	6kp3	0.82
a.118.8.6: TPR-like	d3cgha1	3cgh	0.8
a.118.8.6: TPR-like	d3cgha1	3cgh	0.8
a.118.8.0: TPR-like	d3rkva_	3rkv	0.79
a.118.8.0: TPR-like	d3rkva_	3rkv	0.79

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00296	Bac_luciferase	26.21
PF00211	Guanylate_cyc	17.48
PF13191	AAA_16	14.56
PF13671	AAA_33	6.80
PF07676	PD40	1.94
PF13344	Hydrolase_6	1.94
PF07690	MFS_1	0.97
PF12680	SnoaL_2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	26.21
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	17.48

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.96 %
Unclassified	root	N/A	32.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.96 %
Unclassified	root	N/A	32.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.96 %
Unclassified	root	N/A	32.04 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	46.60 %
Unclassified	root	N/A	32.04 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	44.66 %
Unclassified	root	N/A	32.04 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.04 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.80 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.04 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.94 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.94 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.97 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.97 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.04 %
Dermabacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae	1.94 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.97 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.97 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.04 %
Brachybacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium	1.94 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	0.97 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.97 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.04 %
Brachybacterium avium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → Brachybacterium avium	1.94 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	0.97 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.97 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459016\|G1P06HT02G0OW5	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0427931	Not Available	500	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10631051	Not Available	571	Open in IMG/M
3300000858\|JGI10213J12805_10031569	Not Available	734	Open in IMG/M
3300000858\|JGI10213J12805_10856627	Not Available	596	Open in IMG/M
3300000890\|JGI11643J12802_10223258	Not Available	686	Open in IMG/M
3300003911\|JGI25405J52794_10142857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300004114\|Ga0062593_101572901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	712	Open in IMG/M
3300004463\|Ga0063356_100557726	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1534	Open in IMG/M
3300005093\|Ga0062594_101981896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	621	Open in IMG/M
3300005168\|Ga0066809_10006381	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300005339\|Ga0070660_100489484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1023	Open in IMG/M
3300005455\|Ga0070663_100861511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	780	Open in IMG/M
3300005545\|Ga0070695_100850031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	734	Open in IMG/M
3300005719\|Ga0068861_100796523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	887	Open in IMG/M
3300006576\|Ga0074047_10620124	Not Available	524	Open in IMG/M
3300006581\|Ga0074048_13217321	Not Available	1176	Open in IMG/M
3300009100\|Ga0075418_11125033	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300009100\|Ga0075418_12868699	Not Available	526	Open in IMG/M
3300009176\|Ga0105242_10323982	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300009840\|Ga0126313_11438748	Not Available	572	Open in IMG/M
3300010037\|Ga0126304_10502062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	814	Open in IMG/M
3300010037\|Ga0126304_10620809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	729	Open in IMG/M
3300010039\|Ga0126309_10188821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1133	Open in IMG/M
3300010042\|Ga0126314_10317860	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300010166\|Ga0126306_10718201	Not Available	802	Open in IMG/M
3300010399\|Ga0134127_11373998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	777	Open in IMG/M
3300011412\|Ga0137424_1091767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300012490\|Ga0157322_1046958	Not Available	514	Open in IMG/M
3300012905\|Ga0157296_10436483	Not Available	500	Open in IMG/M
3300012906\|Ga0157295_10130550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	729	Open in IMG/M
3300012912\|Ga0157306_10465230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300012957\|Ga0164303_10725043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300012958\|Ga0164299_10764086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	684	Open in IMG/M
3300012960\|Ga0164301_10175015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1341	Open in IMG/M
3300014497\|Ga0182008_10128763	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300015077\|Ga0173483_10504722	Not Available	646	Open in IMG/M
3300015077\|Ga0173483_10865179	Not Available	529	Open in IMG/M
3300015200\|Ga0173480_10019402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	2823	Open in IMG/M
3300015373\|Ga0132257_100458931	Not Available	1557	Open in IMG/M
3300017965\|Ga0190266_10102539	Not Available	1179	Open in IMG/M
3300018073\|Ga0184624_10228975	Not Available	832	Open in IMG/M
3300018074\|Ga0184640_10032847	All Organisms → cellular organisms → Bacteria	2070	Open in IMG/M
3300018076\|Ga0184609_10255922	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300018078\|Ga0184612_10171004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1133	Open in IMG/M
3300018465\|Ga0190269_11291197	Not Available	582	Open in IMG/M
3300018465\|Ga0190269_11470543	Not Available	558	Open in IMG/M
3300018466\|Ga0190268_10582550	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300018469\|Ga0190270_10985593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	868	Open in IMG/M
3300018469\|Ga0190270_11989683	Not Available	639	Open in IMG/M
3300018469\|Ga0190270_13192275	All Organisms → cellular organisms → Bacteria → Terrabacteria group	519	Open in IMG/M
3300019356\|Ga0173481_10350212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300019869\|Ga0193705_1005065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → Brachybacterium avium	2888	Open in IMG/M
3300019873\|Ga0193700_1066305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300019878\|Ga0193715_1111389	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300021445\|Ga0182009_10196417	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300021510\|Ga0222621_1137522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520	Open in IMG/M
3300022756\|Ga0222622_10006100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	5458	Open in IMG/M
3300025972\|Ga0207668_10327594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1273	Open in IMG/M
3300026067\|Ga0207678_11495375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	596	Open in IMG/M
3300027560\|Ga0207981_1006251	All Organisms → cellular organisms → Bacteria	2111	Open in IMG/M
3300027886\|Ga0209486_10098652	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300027886\|Ga0209486_10446083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	794	Open in IMG/M
3300028596\|Ga0247821_10436594	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300028708\|Ga0307295_10134602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300028711\|Ga0307293_10133950	Not Available	789	Open in IMG/M
3300028711\|Ga0307293_10272211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300028713\|Ga0307303_10004643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2232	Open in IMG/M
3300028720\|Ga0307317_10037981	Not Available	1519	Open in IMG/M
3300028722\|Ga0307319_10029682	Not Available	1691	Open in IMG/M
3300028754\|Ga0307297_10006793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → Brachybacterium avium	2902	Open in IMG/M
3300028754\|Ga0307297_10146279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	804	Open in IMG/M
3300028771\|Ga0307320_10345120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	594	Open in IMG/M
3300028784\|Ga0307282_10150534	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300028787\|Ga0307323_10283221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	596	Open in IMG/M
3300028790\|Ga0307283_10201149	Not Available	570	Open in IMG/M
3300028793\|Ga0307299_10149640	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300028814\|Ga0307302_10031335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2443	Open in IMG/M
3300028814\|Ga0307302_10278035	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300028814\|Ga0307302_10450142	Not Available	638	Open in IMG/M
3300028828\|Ga0307312_10379561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	926	Open in IMG/M
3300028828\|Ga0307312_11121897	Not Available	520	Open in IMG/M
3300028872\|Ga0307314_10064225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	946	Open in IMG/M
3300028880\|Ga0307300_10024064	Not Available	1624	Open in IMG/M
3300028884\|Ga0307308_10068480	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300028885\|Ga0307304_10472429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300030336\|Ga0247826_10109605	All Organisms → cellular organisms → Bacteria	1738	Open in IMG/M
3300030496\|Ga0268240_10185887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	526	Open in IMG/M
3300031092\|Ga0308204_10156603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300031093\|Ga0308197_10443787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	519	Open in IMG/M
3300031740\|Ga0307468_100856582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	782	Open in IMG/M
3300031824\|Ga0307413_12106519	Not Available	510	Open in IMG/M
3300031824\|Ga0307413_12161563	Not Available	504	Open in IMG/M
3300031903\|Ga0307407_10115823	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300031938\|Ga0308175_100862957	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	994	Open in IMG/M
3300031943\|Ga0310885_10420672	Not Available	715	Open in IMG/M
3300031995\|Ga0307409_101001901	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300031996\|Ga0308176_12714962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300032004\|Ga0307414_10819870	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300032005\|Ga0307411_10904991	Not Available	784	Open in IMG/M
3300032005\|Ga0307411_12297902	Not Available	507	Open in IMG/M
3300033550\|Ga0247829_10482018	Not Available	1026	Open in IMG/M
3300033550\|Ga0247829_10996341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	696	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.61%
Host-Associated	Host-Associated	19.42%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.82%
Plants	Host-Associated → Plants	19.42%
Aquatic	Environmental → Aquatic	6.80%
Solid Waste	Engineered → Solid Waste	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.56%
Sediment	Environmental → Aquatic → Sediment	6.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.85%
Grass	Engineered → Solid Waste → Grass	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Loam	Environmental → Terrestrial → Soil → Loam	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	42.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2ZMR_03124520	2170459016	Switchgrass, Maize And Mischanthus Litter	EEAERYFASAREVAAQTSNRLELADLDRLHARMLLERGRTGDQARAAEMLDDALTAYRVFGMPAYAAEAERLMHEARS
ICChiseqgaiiDRAFT_04279312	3300000033	Soil	LVDLRRLRARMLLDRGGRGDQEKAAELLNEALTAYRAFGMPTYAAEAERLQRRAHV*
ICChiseqgaiiFebDRAFT_106310511	3300000363	Soil	MSNRLELVDLRRLRARMLLERRSTGDQEQAVELLQEALSAYRAFGMPTYAAEAERLQRQARA*
JGI10213J12805_100315691	3300000858	Soil	MRNRLELADLGRLEARMLLERSGRGDHERAAEMLQEALSAYRTFGMPGYAAEAERLQRLARM*
JGI10213J12805_108566271	3300000858	Soil	LHARMLLDRGGAGDHERAAGMLQEALSAYRTFGMSAYAAEAERLQGLARV*
JGI11643J12802_102232582	3300000890	Soil	AREIAEQMRNRLELADLDRLEAGMLLDRGGKGDHERAAEMLQEALSAYRTFGMPAYAAEAERLQRLTRV*
JGI25405J52794_101428572	3300003911	Tabebuia Heterophylla Rhizosphere	LDRRGPGDNALAAEILERALAAYREFGMPAYAAEAERLRDHALH*
Ga0062593_1015729012	3300004114	Soil	DLRRLHARMLLERGSNGDHARAAEMLEEAMSAYRTSGMPAYAAETERLLSQAQG*
Ga0063356_1005577261	3300004463	Arabidopsis Thaliana Rhizosphere	IAEQMSNRLELVDLRRLRARMLLERGGSGDQEQAAGLLQEALSAYRAFGMPTYAAEAERLQREARV*
Ga0062594_1019818961	3300005093	Soil	LELADLRRLHARMLLEHGSDGDHARATEMLQEAMSAYRMFGMPAYAAETERLLSQAQG*
Ga0066809_100063811	3300005168	Soil	EQMGNRLEIADLGRLHAGMLLHRGGKGDHARAVMMLQQALSAYRTFGMRAYVAEAERLQRLASV*
Ga0070660_1004894841	3300005339	Corn Rhizosphere	EQMSNRLELADLRRLHARMLLEHGSDGDHARAAEMLQEAMSAYRMFGMPAYAAETERLLSQAQG*
Ga0070663_1008615112	3300005455	Corn Rhizosphere	WDEAECEFAIARDIAEQMSNRLELADLRRLHARMLLEHGSDGDHARATEMLQEAMSAYRMFGMPAYAAETERLLSQAQG*
Ga0070695_1008500312	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	HARMLLEHGSDGDHARAAEMLQEAMSAYRMFGMPAYAAETERLLSQAQG*
Ga0068861_1007965231	3300005719	Switchgrass Rhizosphere	ELADLRRLHARMLLEHGSDGDHARAREMLQEAMSAYRMFGMPAYAAETERLLSQAQG*
Ga0074047_106201241	3300006576	Soil	NRLEIADLGRLHAGMLLHRGGKGDHARAVMMLQQALSAYRTFGMRAYVAEAERLQRLASV
Ga0074048_132173211	3300006581	Soil	DEAERLFGVAREIAEQMGNRLEIADLGRLHAGMLLHRGGKGDHARAVMMLQQALSAYRTFGMRAYVAEAERLQRLASV*
Ga0075418_111250332	3300009100	Populus Rhizosphere	AERHFGLAREIAKQMRNRLELADLDRLEAGMLLNRGGKGDHERAAEMLQEALSAYRTFGMPAYVAEAERLQRLARV*
Ga0075418_128686992	3300009100	Populus Rhizosphere	LLDRGGVGDHERAAGMIQEALSAYRTFGMPAYAAEAERLQRLAGV*
Ga0105242_103239821	3300009176	Miscanthus Rhizosphere	QFAIAMKVAEQMDNRLELADLRRLHARMLLARGSNGDYTRAAEMLDEALSAYRTFGIRAYATEAERLLSQARA*
Ga0126313_114387482	3300009840	Serpentine Soil	RQFAVAREIAEQMHNRLELADLSRLHARMLLYRGSTGDHARAAGMLEGALAAYRSFGMSGYAAETERLLGQARESV*
Ga0126304_105020622	3300010037	Serpentine Soil	RVELADLCRLHARMLLDRGSRGDHERAAEMLQEALSAYRAFGMPGYAVEAERLLSQAQV*
Ga0126304_106208091	3300010037	Serpentine Soil	RMLLDRGGTGDHERAFEMLQEALSAYSTLGMPAYAAEAERLQRLAAF*
Ga0126309_101888211	3300010039	Serpentine Soil	ERHFGLAREVAERMGNRVELADLCRLHARMLLGRGSPGDHERAAEMLQEALSAYRAFGMPGYAAEAERLLSQAQV*
Ga0126314_103178601	3300010042	Serpentine Soil	AREVAKQTGNRLELADLARLEAAMLLDRSGEGDYERAAEMLEEAWSAYRSFGMPAFAAEAERLLGMARI*
Ga0126306_107182011	3300010166	Serpentine Soil	RMLLDRGGTGDHERAAGMLQEAVSAYHTFGMPAYAAEAERLQRQARA*
Ga0134127_113739981	3300010399	Terrestrial Soil	MSNRLELADLRRLHARMLLEHGSDGDHARAAEMLQEAMSAYRMFGMPAYAAETERLLSQAQG*
Ga0137424_10917671	3300011412	Soil	RLHARMLLDRGGTGDDARAAEMLEGALAAYRDFGMPPYAAEAERLRGQALA*
Ga0157322_10469581	3300012490	Arabidopsis Rhizosphere	EREFAIASDIAEQMSNRLELVDLRRLRGRMLLERGGSGDQEQAAEILQEALAAYAAFGMPSYAAEVERLVEQLRASS*
Ga0157296_104364832	3300012905	Soil	RRLRARMLLDRGGRGDQEKAAELLNEALTAYRAFGMPSYAAEAERLQRRAHV*
Ga0157295_101305501	3300012906	Soil	AIANDIAEKMSNRLELADLHRLHARMLLERGGDGDHARAAEMLEEAMSAYRTSGMPAYAAETERLLSQAQG*
Ga0157306_104652302	3300012912	Soil	ELADLRRLEARMLLDRGSAGDHLLAAQLLQEALAAYRVFGVPAYAAEVERLIGQAQG*
Ga0164303_107250431	3300012957	Soil	RLHARMLLERGGDGDHARAAEMLEEAMSAYRTSGMPAYAAETERLLSQAQG*
Ga0164299_107640861	3300012958	Soil	DLHRLHARMLLERGADGDHARAAEMLEEAMSAYRTSGMPAYAAETERLLSQAQG*
Ga0164301_101750152	3300012960	Soil	NDIAEKMSNRLELADLHRLHARMLLERGADGDHARAAEMLEEAMSAYRTSGMPAYAAETERLLSQAQG*
Ga0182008_101287631	3300014497	Rhizosphere	IARQMGNRLELADLCRLHGRMLLDRGDHNRAAEMLQEALSAYLTFGMPSYAAEAERLQRQAMA*
Ga0173483_105047222	3300015077	Soil	EREFAIAGDIAEQMSNRLELVDLRRLRARMLLERGGSGDQEKAAELLQEALSAYRAFGMPTYAAEAERLQRQARV*
Ga0173483_108651792	3300015077	Soil	DRGGTGDHERAAEMLREALSAYNAFGMPGVAAEAERLQRLAGF*
Ga0173480_100194023	3300015200	Soil	EARMLLDRGSAGDHLLAAQLLQEALAAYRVFGMPAYAAEVERLIGQAQG*
Ga0132257_1004589311	3300015373	Arabidopsis Rhizosphere	LVDLRRLRGRMLLERGGSGDQEQAAEMLREALAAYAAFGMPSYAAEVERLVEQLRASS*
Ga0190266_101025392	3300017965	Soil	LLDRGGKGDHERAAEMLQEALSAYRRFGMPVYAAEAERLQRQARVLA
Ga0184624_102289751	3300018073	Groundwater Sediment	RMLLDRGAKGDHERAAEILQEAVSAYRAFGMPAYAAEAERLQGQTRL
Ga0184640_100328472	3300018074	Groundwater Sediment	ARMLLDRGGKGDHERAAEMLQEALSAYRTFGMPAYAAEAERLQRQARA
Ga0184609_102559221	3300018076	Groundwater Sediment	RMLLDRGGTGDNERAAEMLQEALSAYRTFGMPAYVAEAERLQRQALA
Ga0184612_101710041	3300018078	Groundwater Sediment	NWVELADLRRLHARMLLDRGASGDHARAAEMLEGALAAYHTFGMPGYAADAERLRLQALS
Ga0190269_112911971	3300018465	Soil	LHARMLLDRGSAGDHERAAEMLQEAMSAYRTFGMPGYAAEAERLQRQARA
Ga0190269_114705432	3300018465	Soil	MSNRLELVDLRRLHARMLLDRGSDGDYARAAEMLEEALSAYRAFGMPAYAAETERLLSQAQR
Ga0190268_105825501	3300018466	Soil	GMLLDRGRKGDHERAAEMLQEALSAYRTFGMPAYAAEAERLQRLARV
Ga0190270_109855932	3300018469	Soil	LELADVCRLHARMLLDRAGVGDYARAAKMLEEARTAYGGFGMPAYTAEAERLLQQAQA
Ga0190270_119896831	3300018469	Soil	NWLELADLGRLPARMLLDRGGEGGHERAAEMLQEALSAYRRFGMPVYAAETERLQRQARVLA
Ga0190270_131922751	3300018469	Soil	ELADLRRFHARMLLDRGSNGDHARAAEMLDEALSAYRTFGIRAYATEAERLLSQARV
Ga0173481_103502122	3300019356	Soil	AAQTSNRLELADLDRLHARMLLDCGGSGNDARAAEMLERALAAYRDFGMPAYAADAERLRGRALA
Ga0193705_10050651	3300019869	Soil	CRLHARMLLDRRSDGDHARAAEMLEEALTAYRAFGMPAYATEAERLRRQALG
Ga0193700_10663051	3300019873	Soil	DLRRLEARMLLDRGSAGDYLLAAQLLQDALAAYRVFGMPAYAAEVERLIEQAQG
Ga0193715_11113891	3300019878	Soil	SEVAEQMSNRLELADLRRLHARLLLDRGGSGDHERAAEMLEVALAAYRSFGMTAYAAESERLRRQAQN
Ga0182009_101964171	3300021445	Soil	FSAAREIARQMGNRLELADLCRLHGRMLLDRGDHNRAAEMLQEALSAYLTFGMPSYAAEAERLQRQAMA
Ga0222621_11375222	3300021510	Groundwater Sediment	LELADLRRLHARMLLEHGSDGDHARAAEMLQEAMSAYRTFGMPAYAAETERLLSQAQG
Ga0222622_100061001	3300022756	Groundwater Sediment	RMLLDRRSDGDHARAAEMLEEALTAYRAFGMPAYATEAERLRRQALG
Ga0207668_103275941	3300025972	Switchgrass Rhizosphere	IAEQMSNRLELADLRRLHARMLLEHGSDGDHARAAEMLQEAMSAYRTFGMPAYVAETERLLSQAQG
Ga0207678_114953752	3300026067	Corn Rhizosphere	EREFAIARDIAEQMSNRLELADLRRLHARMLLEHGSDGDHARAAEMLQEAMSAYQMFGMPAYAAETERLLSQAQG
Ga0207981_10062512	3300027560	Soil	EQMGNRLEIADLGRLHAGMLLHRGGKGDHARAVMMLQQALSAYRTFGMRAYVAEAERLQRLASV
Ga0209486_100986522	3300027886	Agricultural Soil	LADLCRLHARMLLDRGSAGDHERAAEMLQEAVSAYRTFGMPGYAAEAERLQAQARV
Ga0209486_104460832	3300027886	Agricultural Soil	WLHARMLLDRGSPSDPERAAEMLQEALSAYRAFGMPGYAAEAERLLSQAQV
Ga0247821_104365941	3300028596	Soil	MSNRLELADLHRFQARMLLDRESNGDYARAAEMLDEALSAYRTFGMYAYAAEAERLLSQARV
Ga0307295_101346022	3300028708	Soil	NRLHARMLLERGGTGDDARAAEMLEGALAAYRDFGMPAYAAEAERLRGRALA
Ga0307293_101339501	3300028711	Soil	ELADLARLHARMLLDRGDPGDHARAAEMLQEALSAYRTFGMPAYAAEAERLQRQALA
Ga0307293_102722112	3300028711	Soil	KVAEQMTNRLELADLNRLHARMLLERGGTGDDARAAEMLEGALAAYRDFGMPAYAAEAERLRGRALA
Ga0307303_100046433	3300028713	Soil	GWSWPDLRRLEARMLLDRGSAGDYLLAAQLLQDALAAYRVFGMPAYAAEVERLIEQAQG
Ga0307317_100379811	3300028720	Soil	LLERGGTGDDARAAEMLEGALAAYRDFGMPAYAAEAERLRGRALA
Ga0307319_100296821	3300028722	Soil	RQWDEAERHFTIARKVAEQMTNRLELADLNRLHARMLLERGGTGDDARAAEMLEGALAAYRDFGMPAYAAEAERLRGRALA
Ga0307297_100067931	3300028754	Soil	LADLCRLHARMLLDRRSDGDHARAAEMLEEALTAYRAFGMPAYAAEAERLRRQALG
Ga0307297_101462792	3300028754	Soil	NRLELTDLRRLHARMLLDRGSNGDYARAAEMLEEALSAYRTFGMPAYAAETERLLSQAQR
Ga0307320_103451201	3300028771	Soil	LLELADLSRLHARMLLDRGGTGDQARAAEMLEEALAAYRVFGMPAYAAEAERLMHEARG
Ga0307282_101505341	3300028784	Soil	CLHAGMLLDRGGTGDHERAAEMLQEALSAYRTFGMPAYAAEAERLQRQASA
Ga0307323_102832211	3300028787	Soil	RLHARMLLDRGSNGDYARAAEMLEEALSAYRRFGMPAYAAETERLLSQAQR
Ga0307283_102011492	3300028790	Soil	LRNRLELADLNRLEGRMLLDRGAKGDHERAAEILQEAVSAYRAFGMPAYAAEAERLQGQTRL
Ga0307299_101496402	3300028793	Soil	ARMSNRVELADLCCLHARMLLDRGGTGDHERAAEMLQEALSAYRTFGMPAYAAEAERLQRQASA
Ga0307302_100313351	3300028814	Soil	LADLDRLHARMLLDRGGTGDDARAAEMLERALAAYSDFGIPAYATEAERLRGQALA
Ga0307302_102780351	3300028814	Soil	RLHARMLLDRDDTGDHERAAEMLQEALSAYRTFGMPGYVAEAERLQRQAQDFSGPPP
Ga0307302_104501421	3300028814	Soil	HARMLLDRGDPGDHERAAEMLQEALSAYRTFGMPGVAAEAERLQRLAGF
Ga0307312_103795611	3300028828	Soil	RRLEARMLLDRGSAGDYLLAAQLLQDALAAYRVFGMPAYAAEVERLIEQAQG
Ga0307312_111218971	3300028828	Soil	LCRLHARMLLDRGGTGDHERAAEMLQEASSAYRTFGMPAYAAEAERLRRLARV
Ga0307314_100642252	3300028872	Soil	LNRLHARMLLERGGTGDDARAAEMLEGALAAYRDFGMPAYAAEAERLRGRALA
Ga0307300_100240641	3300028880	Soil	ARMLLERGGTGDDARAAEMLEGALAAYRDFGMPAYAAEAERLRGRALA
Ga0307308_100684801	3300028884	Soil	RNRLELADLNRLEARMLLDRGAKGDHERAAEILQEAVSAYRAFGMPAYAAEAERLQGQTR
Ga0307304_104724291	3300028885	Soil	FAIASDIAEQMSNRLELTDLRRLHARMLLNRGSNGDYARAAEMLEEALSAYRTFGMPAYAAETERLLSQAQR
Ga0247826_101096051	3300030336	Soil	VAAQMSNRLELADLHRFQARMLLDRESNGDYARAAEMLDEALSAYRTFGMYAYAAEAERLLSQARV
Ga0268240_101858871	3300030496	Soil	LADLDRLQARVLLERADNGDHARAAGLLEHALSAYRTFGMPAYAAEAEARLRQARGGRPA
Ga0308204_101566031	3300031092	Soil	RMLLDRGGTGDQARAAEMLEEALAAYRVFGMPAYAAEVERLIGQAQG
Ga0308197_104437871	3300031093	Soil	RLELADLRRLHARLLLDRGGSGDYERAAEMLEVALADYRSFGMTAYAAESERLRRQAQN
Ga0307468_1008565822	3300031740	Hardwood Forest Soil	AQMSNRLELADLHRFQARMLLDRESNGDYARAAEMLDEALSAYRTFGMYAYAAEAERLLSQARV
Ga0307413_121065191	3300031824	Rhizosphere	QMGNRLELADLARLEAAMLLDRSGEGDHERAAEMLEEAWSAYRSFGMPTFAAEAERLLGMARI
Ga0307413_121615631	3300031824	Rhizosphere	RVELADLYCLHARMLLDRGGTGDHERAFEMLQEALSAYSTLGMPAYAAEAERLQRLAAF
Ga0307407_101158231	3300031903	Rhizosphere	SVARDIAKQMGNQLELADLGRLHARMLLDRGGTRDRERAAEMLQEALTAYRMFGMPAYEAEAERLQRNARA
Ga0308175_1008629572	3300031938	Soil	RLEAGMLLDRGGKGDHERAAGMLQEALAAYRTFGMPAYAAEAERLQRLTRV
Ga0310885_104206721	3300031943	Soil	ELADLHRFQARMLLDRESNGDYARAAEMLDEALSAYRTFGMYAYAAEAERLLSQARV
Ga0307409_1010019011	3300031995	Rhizosphere	ELADLCRVHARMLLDRGSVGDHERAAEMLQEAVSAYRTFGMPGYAAEAERLQAQARV
Ga0308176_127149621	3300031996	Soil	RLELADLRRLEARMLLDRGGADDHLLAAELLQEALAAYRLFGMPAYAAEVERLIGQAEG
Ga0307414_108198701	3300032004	Rhizosphere	ARMLLDPGSVGDHERAAEMLQEAVSAYRTFGMPGYAAEAERLQAQARV
Ga0307411_109049911	3300032005	Rhizosphere	DLCRVHARMLLDRGSVGDHERAAEMLQEAVSAYRTFGMPGYAAEAERLQAQARV
Ga0307411_122979022	3300032005	Rhizosphere	RLHARMLLDRGGTRDRERAAEMLQEALTAYRMFGMPAYEAEAERLQRNARA
Ga0247829_104820182	3300033550	Soil	RMLLDRGGAGDHERAAKMLEEALSAYRTFGMPGVAAEAERLQRQTLA
Ga0247829_109963411	3300033550	Soil	DLRRLHARMLLERGSNGDHARAAEMLEEALSAYRTFGMPAYAAESERLLGQAQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099254

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences