Metagenome / Metatranscriptome Family F099046

Basic Information
Family ID	F099046
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	43 residues
Representative Sequence	TIDATERAAIEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR
Number of Associated Samples	89
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.97 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Unclassified (99.029 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (28.155 % of family members)
Environment Ontology (ENVO)	Unclassified (37.864 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.340 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.03% β-sheet: 0.00% Coil/Unstructured: 61.97%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01434	Peptidase_M41	63.11
PF02355	SecD_SecF	8.74
PF07549	Sec_GG	1.94
PF00004	AAA	0.97
PF13419	HAD_2	0.97
PF14690	zf-ISL3	0.97
PF03006	HlyIII	0.97
PF13518	HTH_28	0.97
PF04055	Radical_SAM	0.97
PF13683	rve_3	0.97
PF02272	DHHA1	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	63.11
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	10.68
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	10.68
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.97

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
All Organisms	root	All Organisms	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
cellular organisms	root	All Organisms → cellular organisms	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005177\|Ga0066690_10051575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2510	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.20%
Host-Associated	Host-Associated	6.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.41%
Aquatic	Environmental → Aquatic	6.80%
Plants	Host-Associated → Plants	6.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.85%
Freshwater	Environmental → Aquatic → Freshwater	3.88%
Sediment	Environmental → Aquatic → Sediment	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.94%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.73%
Loam	Environmental → Terrestrial → Soil → Loam	9.71%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.88%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	28.16%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.88%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012003	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013427	Permafrost microbial communities from Nunavut, Canada - A15_35cm_18M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015079	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6b, vegetation/snow interface)	Environmental	Open in IMG/M
3300015203	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3c, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025173	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A10PFW1_116603052	3300001538	Permafrost	VSHPGTIVPAERAAIEALLGAFDALRYDRDAGPVRFVTPAQLAKAYRP*
JGI25382J43887_101403321	3300002908	Grasslands Soil	ATERAAIEALFEAFAPVRYDRDAGPVHFVTLAQLAKAYGR*
soilH2_102709632	3300003324	Sugarcane Root And Bulk Soil	ATIDATERAAIETLFAAFEPYRWDRQHGPLRFVTLSQLAKAIGP*
Ga0063356_1003024651	3300004463	Arabidopsis Thaliana Rhizosphere	RAMTLVSHPSTIDATERAAIEKLFQAFEPYRLDRDKGPLRFVTLSQLAKAYGP*
Ga0062592_1002132132	3300004480	Soil	GTIDTIERAAIEALFHAFDPYRYDRDSGPLRFVTLAQLAKAYGR*
Ga0066683_106312871	3300005172	Soil	RAVTIVSHPSTIDATERGAIAALFSALAPLRYDLDNGPVRFVTLAQLAQAWR*
Ga0066680_101000601	3300005174	Soil	PGTINAAEGAAINSLFDALATLRYDLDKGPLRFVTLAQLAQAWR*
Ga0066673_103432211	3300005175	Soil	IDATERAAITALFDAFAPLRYDRDAGPVRFVTLAQLAKAWR*
Ga0066690_100515751	3300005177	Soil	GTIDATERAAITELFDALASLRYDLDNGPLRFVTLAQLAQAWR*
Ga0066671_106292061	3300005184	Soil	IDATERGAIEALFTAFDPYRYDRDAGPLRFVTAAELAQAYR*
Ga0066676_102581052	3300005186	Soil	TIDATERAAIEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0066676_106422031	3300005186	Soil	RRAITIVSHPGTIDATERAAITALFEALTPLRYDQDKGPVRFVTLAQLAQAWP*
Ga0066675_111982281	3300005187	Soil	IDASERAAIEALLGAFAPLRYDRDTGPLRFVTLAQLAKAYGL*
Ga0065715_101582342	3300005293	Miscanthus Rhizosphere	IDTIERAAIEALFHAFDPYRYDRDAGPLRFVTLAQLAKAYGR*
Ga0070691_106202071	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	TERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYRP*
Ga0066686_104734761	3300005446	Soil	RAITIVSHPGTIDATECAAITALFNAFAPLRYDLDNGPVRFVTLAQLAQAWR*
Ga0070706_1003225741	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	TIDATERAAIEALFDAFGPLRYDADRGPVRFVTLAELAEAWR*
Ga0070706_1003317551	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GTIDATERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0070697_1006787091	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	SHPATIDAIERDAIESLFTAFAPLRYDADAGPVRFVTLAQLAQALK*
Ga0070697_1019991632	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LVSHPGTITATERAAIEALFQAFEPVRYDRDAGPVRFVTLAQLAKAYGR*
Ga0066704_101393062	3300005557	Soil	NERAAITALFDAFTPLRYDLDNGPLRFVTLAQLAQAWR*
Ga0066700_102811452	3300005559	Soil	ITIVSHPGTIDATERAAITALFDALAALRYDQDKGPVRFVTLAQLAQAWP*
Ga0066699_102142843	3300005561	Soil	SHPGTIGPAERAAIEALLGAFGPLRYDADAGPVRFVTLAQLATAWGR*
Ga0066699_103663561	3300005561	Soil	AIETLFAAFEPLRYDRGNGPLRFVTLAQLATAYSR*
Ga0066703_102236181	3300005568	Soil	ERAAIESLFAAFAPLRYDRDIGPVRFVTLAQLARAYG*
Ga0066691_104009602	3300005586	Soil	ERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYAR*
Ga0066706_100985801	3300005598	Soil	TIDATERAAITELFDALASLRYDLDNGPLRFVTLAQLAQAWR*
Ga0066706_102337202	3300005598	Soil	TIDATERAAITELFDALASLRYDLDNGPLRFITLAQLAQAYPY*
Ga0066706_114399371	3300005598	Soil	TIVASERAAIETLFAAFEPLRYDRGNGPLRFVTLAQLAEAYSR*
Ga0068870_105170651	3300005840	Miscanthus Rhizosphere	PATVNATERAAIESLFRSFEPYRYDRDGGPLRFVTLAQLAQAFK*
Ga0066653_105969141	3300006791	Soil	AAIEALFLAFDPVRYDRDAGPVRFVTLAQLAKAYGR*
Ga0066659_101176461	3300006797	Soil	TLVSHPGTIVPAERAAIESLFSAFAPLRYDRDAGPVRFITLAQLATAYGP*
Ga0075425_1003102882	3300006854	Populus Rhizosphere	ERGAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0079215_104134661	3300006894	Agricultural Soil	IEKLFQAFEPYRWDRDKGPLRFVTLSQLAKAYGP*
Ga0075424_1023602081	3300006904	Populus Rhizosphere	GTIDATERAAIETLFKAFFPLRYDQDSGPLRFVTLAQLAAAYSR*
Ga0079216_115837071	3300006918	Agricultural Soil	HPSTIDATERAAIEKLFQAFEPYRWDRDKGPLRFVTLSQLAKAYGP*
Ga0079218_108255502	3300007004	Agricultural Soil	EKLFQAFEPYRWDRDKGPLRYVTLSQLAKAYSSP*
Ga0066710_1001236695	3300009012	Grasslands Soil	ERAAIEALVKAFAPLRYDRDVGPLRFVTLAEVAKAYSK
Ga0066710_1006498501	3300009012	Grasslands Soil	IVSHPGTIDATERAAIETLLGAFAPVRYDRDTGPLRFVTLAQLAKAYGL
Ga0066710_1012889213	3300009012	Grasslands Soil	GAIEALLGAVGPLRYDADAGPVRFVTLAQLATAWAR
Ga0099827_118890632	3300009090	Vadose Zone Soil	IVSHPGTLDATEPAAITALFEALAPLRYDLDRGPVRFVTLAQLAQAWR*
Ga0066709_1022066862	3300009137	Grasslands Soil	DATERDAIEALFRAFEAYRYDRDAGALRFVTLAQLAKAYAR*
Ga0105164_101217611	3300009777	Wastewater	PGTIDAAERAAIETLLHAFDPFRYDQDRGPVRSITLRELAQVWK*
Ga0134088_102730402	3300010304	Grasslands Soil	IEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0134111_102294031	3300010329	Grasslands Soil	SHPGTIDATERAAITELFDALASLRYDLDNGPLRFITLAQLAQAYPY*
Ga0134126_130995412	3300010396	Terrestrial Soil	RAAITALFDALAPLRYDRDAGPVRFVTLAQLAQAWR*
Ga0134124_127090721	3300010397	Terrestrial Soil	TLVSHPATIDATERAAIEKLFAAFEPYRWDRDMGPLRYVTLAQLAKAFGP*
Ga0120163_10859061	3300012003	Permafrost	PGTIDATERAAIAALFNALAPLRYDRDAGPVRFVTLAQLAQAWR*
Ga0137399_105607192	3300012203	Vadose Zone Soil	IDVTERAAITALFEALAPLRYDQDKGPLRFVTLAQLAQAWR*
Ga0137399_109839011	3300012203	Vadose Zone Soil	AIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYAR*
Ga0137380_113324472	3300012206	Vadose Zone Soil	TVVSHPGTNDATERAAIEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0137381_107552762	3300012207	Vadose Zone Soil	VSHPGTIDATERAAITAIFNALAPFRYDLDQGPLRFVTLAQLAQAWR*
Ga0137376_103171501	3300012208	Vadose Zone Soil	IDATERAAITALFDAFAPLRYDRDAGPVRFVTLAQLAQAWR*
Ga0137377_100238871	3300012211	Vadose Zone Soil	HPGTIDATERAATEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0137377_106412772	3300012211	Vadose Zone Soil	HPGTIDATERAAITALFEALAPLRYDQDKGPLRFVTLAQLAQAWP*
Ga0137367_101564851	3300012353	Vadose Zone Soil	ALTLVSHPGTIDATERAAIEALLGAFTPYRYDSDAGPLRFVTLAQLAKAYSR*
Ga0137367_107468521	3300012353	Vadose Zone Soil	TIDATERAAIETLFRAFEPLRYERDTGPLRFVTLAQLAKAYSP*
Ga0137368_100881693	3300012358	Vadose Zone Soil	TIDATERGAIEKLFAAFEPYRWDRDMGPLRYVTLAQLAKAYGP*
Ga0137397_100497301	3300012685	Vadose Zone Soil	RAAIEALFKAFGPLRYDADSGPVRFVTLAQVAQAFR*
Ga0137396_104046541	3300012918	Vadose Zone Soil	IDATERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYAR*
Ga0137410_103743431	3300012944	Vadose Zone Soil	EVKVARDATERAAITALFNALAPLRYDLDKGPVRFVTLAQLAQAWR*
Ga0120106_10260463	3300013427	Permafrost	AIEALLGAFDPLRYDLDSGPVRFVTLAQLAKAYGP*
Ga0120158_102850281	3300013772	Permafrost	IEALLGAFDALRYDKDSGPVRFVTAAQLAKAYRQ*
Ga0134075_100132982	3300014154	Grasslands Soil	VSHPGTIDATERAAIAALFNALAPLRYDRDSGPLRFVTLAQLAQAWR*
Ga0167657_10343822	3300015079	Glacier Forefield Soil	GTIDATERAAIESLFQSFEPYRYDRDHGPVRFVTLAQLAQALK*
Ga0167650_11111581	3300015203	Glacier Forefield Soil	TIVPAERAAIEALLGAFDGLRYDKDAGPVRFVTAAQLAKAYRQ*
Ga0137409_100429411	3300015245	Vadose Zone Soil	GTIDATERAAITALFNALAPLRYDLDKGPVRFVTLAQLAQAWR*
Ga0132258_131184931	3300015371	Arabidopsis Rhizosphere	LTLVSHPATIDPIERDAIESLFKAFGPLRYEADSGPLRFVTLAQLAQAMK*
Ga0134112_103917251	3300017656	Grasslands Soil	RAITLVSHPGTIDDTERVAIESLFAAFEPLRYDRDEGPLRFVTLAQLARAYAP
Ga0184610_10675301	3300017997	Groundwater Sediment	ERAAIEKLFQAFEPYRWDRDKGPLRFVTLSQLAKAYNR
Ga0184604_103734222	3300018000	Groundwater Sediment	TESAAIAALFNALGPLRYDRDSGPVRFVTLAQLAQAWR
Ga0184632_101861952	3300018075	Groundwater Sediment	VSHPSTIDATERGAIETLFRAFDQYRYDRDAGPLRFVTLAQLARAYGP
Ga0215015_104605542	3300021046	Soil	SHPGTFDATERAAIEALFTAFAPLRYDDDAGPVRFVTLTQFAAAYK
Ga0222625_16450601	3300022195	Groundwater Sediment	APLALTIVSHPGTIDATERAAITALFNAFAPLRYDLDKGPVRFVTLAQLAQAWR
Ga0137417_13529882	3300024330	Vadose Zone Soil	VITVVSHPGTIVPAERAAIEALLGAFGPLRYDADAGPVRFVTLAQLAKAYNR
Ga0209642_102485483	3300025167	Soil	GAIEALFRAFDPFRYDRDAGPLRFVTLAQLAKAYAR
Ga0209824_100561721	3300025173	Wastewater	PGTIDATERAAIESLFRALEPYRFDRDRGPVRFITLAQLGKALK
Ga0209824_102181872	3300025173	Wastewater	IVSHPGTIDAAERAAIETLLHAFDPFRYDQDKGPLRFVTLQQLARAWK
Ga0207699_108576413	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PAERAAIEALLMAFGPLRYDTDSGPVRFVTLAQLAKAYAH
Ga0207670_108575732	3300025936	Switchgrass Rhizosphere	TERAAIEALFKSFEPYRYDRDNGPLRFVTLAQLAQAFK
Ga0207704_103110862	3300025938	Miscanthus Rhizosphere	VSHPGTIDTIERAAIEALFHAFDPYRYDRDSGPLRFVTLAQLAKAYGR
Ga0209238_12731822	3300026301	Grasslands Soil	TIDATERAAITALFEALAPLRYDQDKGPLRFVTLAQLAQAWR
Ga0209471_11538641	3300026318	Soil	VPAERAAIESLFSAFAPLRYDRDAGPVRFITLAQLATAYGP
Ga0209473_10559941	3300026330	Soil	GPAERAAVEALLGAFGPLRYDADAGPVRFVTLAQLATAWGR
Ga0209803_11020391	3300026332	Soil	ATERAAIESLFAAFAPLRYDRDIGPVRFVTLAQLARAYG
Ga0209160_11402181	3300026532	Soil	VSHPGTIDANERAAITALFDAFRPLRYDLDNGPLRFVTLAQLAQAWR
Ga0209157_10794521	3300026537	Soil	RAAIESLFAAFAPLRYDRDIGPVRFVTLAQLARAYG
Ga0209056_100437255	3300026538	Soil	AITIVSHPGTIDATERAAITALFEALAPLRYDQDKGPVRFVTLAQLAQAWP
Ga0209056_101199313	3300026538	Soil	DATERAAIEALFRAFEPYRYDRDAGPLRFITLAQLAKAYSR
Ga0209376_11008371	3300026540	Soil	VVSHPGTIDATERAAIEALFRAFEPYRYDRDAGPLRFITLAQLAKAYSR
Ga0209161_101112902	3300026548	Soil	SHPGTIDATERAAITALFEALAPLRYDQDKGPVRFVTLAQLAQAWP
Ga0209474_100482175	3300026550	Soil	VSHPGTIVPAERAAIESLFSAFAPLRYDRDAGPVRFITLAQLATAYGP
Ga0209011_11018731	3300027678	Forest Soil	DATERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYAR
Ga0209590_103324012	3300027882	Vadose Zone Soil	ITATERAAIEALFQAFDPVRYDRDAGPVHFVTLAQLAKAYGR
Ga0209590_106005912	3300027882	Vadose Zone Soil	HPGTIDATERAAITALFDAFSPLRYDRHAGPVRFVTLAQLAQAWR
Ga0307301_101215621	3300028719	Soil	IDATERAVITALFNAFAPLRHDLDNGPVRFVTLAQLAQAWR
Ga0307305_100457771	3300028807	Soil	AAITALFEAFAPLRYDRDAGPVRFVTLAQLAQAWR
Ga0307292_100951431	3300028811	Soil	AIEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR
Ga0307304_102203811	3300028885	Soil	HPGTIDATERAAIEALFQSFEPYRYDRDNGPLRFVTLAQLERAFK
Ga0307473_106594772	3300031820	Hardwood Forest Soil	IDATERAAITALFDAFAPLRYDQDNGPLRFVTLAQLADAWR
Ga0326597_104957451	3300031965	Soil	STIGATERGAIETLFRAFEPLRYDRDAGPLRFVTLAQLAKAYAR
Ga0307471_1026125471	3300032180	Hardwood Forest Soil	TVVSHPGTIDATERAAIESLFAALEPLRYDRDSGPVRFVTLAQLARAYAR
Ga0364934_0425100_357_503	3300034178	Sediment	VSHPSTIDATERGAIETLFRAFDPYRYDRDAGPLRFVTLAQLAKAYSR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099046

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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