NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099012

Metagenome / Metatranscriptome Family F099012

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099012
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 43 residues
Representative Sequence GMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA
Number of Associated Samples 88
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.88 %
% of genes near scaffold ends (potentially truncated) 96.12 %
% of genes from short scaffolds (< 2000 bps) 68.93 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (91.262 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil
(30.097 % of family members)
Environment Ontology (ENVO) Unclassified
(69.903 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(72.816 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.86%    β-sheet: 0.00%    Coil/Unstructured: 57.14%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF13487HD_5 18.45
PF01966HD 17.48
PF13424TPR_12 7.77
PF13191AAA_16 4.85
PF00072Response_reg 0.97
PF00682HMGL-like 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms91.26 %
UnclassifiedrootN/A8.74 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002561|JGI25384J37096_10036601All Organisms → cellular organisms → Bacteria1909Open in IMG/M
3300005172|Ga0066683_10617482All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300005174|Ga0066680_10022682All Organisms → cellular organisms → Bacteria3454Open in IMG/M
3300005174|Ga0066680_10191351All Organisms → cellular organisms → Bacteria1291Open in IMG/M
3300005174|Ga0066680_10219770All Organisms → cellular organisms → Bacteria1203Open in IMG/M
3300005175|Ga0066673_10101431All Organisms → cellular organisms → Bacteria1545Open in IMG/M
3300005178|Ga0066688_10179978All Organisms → cellular organisms → Bacteria1335Open in IMG/M
3300005180|Ga0066685_10690996All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300005186|Ga0066676_10070816Not Available2044Open in IMG/M
3300005446|Ga0066686_10096260All Organisms → cellular organisms → Bacteria1899Open in IMG/M
3300005540|Ga0066697_10039949All Organisms → cellular organisms → Bacteria2630Open in IMG/M
3300005545|Ga0070695_100028971All Organisms → cellular organisms → Bacteria3438Open in IMG/M
3300005552|Ga0066701_10334587All Organisms → cellular organisms → Bacteria939Open in IMG/M
3300005555|Ga0066692_10006473All Organisms → cellular organisms → Bacteria5260Open in IMG/M
3300005558|Ga0066698_10987092Not Available535Open in IMG/M
3300005559|Ga0066700_11014241All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300005560|Ga0066670_10029009All Organisms → cellular organisms → Bacteria2681Open in IMG/M
3300005566|Ga0066693_10015709All Organisms → cellular organisms → Bacteria2220Open in IMG/M
3300005575|Ga0066702_10197431All Organisms → cellular organisms → Bacteria1216Open in IMG/M
3300006046|Ga0066652_100441199All Organisms → cellular organisms → Bacteria1196Open in IMG/M
3300006796|Ga0066665_10260078All Organisms → cellular organisms → Bacteria1378Open in IMG/M
3300006800|Ga0066660_10224303All Organisms → cellular organisms → Bacteria1451Open in IMG/M
3300007076|Ga0075435_100033181All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium4080Open in IMG/M
3300009012|Ga0066710_100131297All Organisms → cellular organisms → Bacteria3439Open in IMG/M
3300009089|Ga0099828_10172417All Organisms → cellular organisms → Bacteria1922Open in IMG/M
3300009089|Ga0099828_10799830All Organisms → cellular organisms → Bacteria845Open in IMG/M
3300010095|Ga0127475_1032421All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300010104|Ga0127446_1099881All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300010108|Ga0127474_1017705All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300010119|Ga0127452_1166639All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes507Open in IMG/M
3300010125|Ga0127443_1132319All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300010126|Ga0127482_1018048All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300010301|Ga0134070_10180339All Organisms → cellular organisms → Bacteria767Open in IMG/M
3300010303|Ga0134082_10010440All Organisms → cellular organisms → Bacteria3349Open in IMG/M
3300010304|Ga0134088_10091783All Organisms → cellular organisms → Bacteria1425Open in IMG/M
3300010333|Ga0134080_10062239All Organisms → cellular organisms → Bacteria1484Open in IMG/M
3300010333|Ga0134080_10261983All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300010336|Ga0134071_10130312All Organisms → cellular organisms → Bacteria1214Open in IMG/M
3300010396|Ga0134126_10160407All Organisms → cellular organisms → Bacteria2719Open in IMG/M
3300012096|Ga0137389_10186078All Organisms → cellular organisms → Bacteria1722Open in IMG/M
3300012198|Ga0137364_10586295All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300012203|Ga0137399_10032624All Organisms → cellular organisms → Bacteria3606Open in IMG/M
3300012205|Ga0137362_10017371All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium5459Open in IMG/M
3300012206|Ga0137380_10343426All Organisms → cellular organisms → Bacteria1332Open in IMG/M
3300012209|Ga0137379_10068386All Organisms → cellular organisms → Bacteria3417Open in IMG/M
3300012209|Ga0137379_10541763All Organisms → cellular organisms → Bacteria1071Open in IMG/M
3300012209|Ga0137379_11000201All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300012211|Ga0137377_10062560All Organisms → cellular organisms → Bacteria3469Open in IMG/M
3300012285|Ga0137370_10051654Not Available2206Open in IMG/M
3300012349|Ga0137387_10149650All Organisms → cellular organisms → Bacteria1661Open in IMG/M
3300012351|Ga0137386_10212001All Organisms → cellular organisms → Bacteria1391Open in IMG/M
3300012356|Ga0137371_10044606All Organisms → cellular organisms → Bacteria3425Open in IMG/M
3300012359|Ga0137385_10424576All Organisms → cellular organisms → Bacteria1131Open in IMG/M
3300012375|Ga0134034_1030930All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300012379|Ga0134058_1015269Not Available729Open in IMG/M
3300012379|Ga0134058_1229786All Organisms → cellular organisms → Bacteria2978Open in IMG/M
3300012390|Ga0134054_1140931All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300012392|Ga0134043_1021729All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300012397|Ga0134056_1099537All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300012398|Ga0134051_1159443All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300012399|Ga0134061_1006750All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300012404|Ga0134024_1263613All Organisms → cellular organisms → Bacteria1166Open in IMG/M
3300012405|Ga0134041_1250106All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300012405|Ga0134041_1337394Not Available1619Open in IMG/M
3300012405|Ga0134041_1420457All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300012683|Ga0137398_10077295All Organisms → cellular organisms → Bacteria2044Open in IMG/M
3300012683|Ga0137398_10293016All Organisms → cellular organisms → Bacteria1092Open in IMG/M
3300012931|Ga0153915_10563885All Organisms → cellular organisms → Bacteria1307Open in IMG/M
3300012976|Ga0134076_10488458All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300014150|Ga0134081_10001531All Organisms → cellular organisms → Bacteria5500Open in IMG/M
3300014150|Ga0134081_10045571All Organisms → cellular organisms → Bacteria1301Open in IMG/M
3300014157|Ga0134078_10136439All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300014157|Ga0134078_10214703All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes791Open in IMG/M
3300015052|Ga0137411_1339479All Organisms → cellular organisms → Bacteria1191Open in IMG/M
3300015357|Ga0134072_10101794All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300015359|Ga0134085_10219556All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300018431|Ga0066655_10014948All Organisms → cellular organisms → Bacteria3478Open in IMG/M
3300018433|Ga0066667_11277578All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes641Open in IMG/M
3300018482|Ga0066669_10090586All Organisms → cellular organisms → Bacteria2090Open in IMG/M
3300020004|Ga0193755_1035726Not Available1639Open in IMG/M
3300024330|Ga0137417_1341372All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2866Open in IMG/M
3300025922|Ga0207646_10106991All Organisms → cellular organisms → Bacteria2509Open in IMG/M
3300026277|Ga0209350_1034400All Organisms → cellular organisms → Bacteria1503Open in IMG/M
3300026296|Ga0209235_1021321All Organisms → cellular organisms → Bacteria3457Open in IMG/M
3300026297|Ga0209237_1227335Not Available578Open in IMG/M
3300026298|Ga0209236_1080451All Organisms → cellular organisms → Bacteria1512Open in IMG/M
3300026305|Ga0209688_1045522All Organisms → cellular organisms → Bacteria829Open in IMG/M
3300026313|Ga0209761_1012514All Organisms → cellular organisms → Bacteria5493Open in IMG/M
3300026313|Ga0209761_1024372All Organisms → cellular organisms → Bacteria3724Open in IMG/M
3300026322|Ga0209687_1120703All Organisms → cellular organisms → Bacteria844Open in IMG/M
3300026324|Ga0209470_1102416All Organisms → cellular organisms → Bacteria1285Open in IMG/M
3300026332|Ga0209803_1022207All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium3110Open in IMG/M
3300026334|Ga0209377_1064161All Organisms → cellular organisms → Bacteria1599Open in IMG/M
3300026335|Ga0209804_1010018All Organisms → cellular organisms → Bacteria5160Open in IMG/M
3300026335|Ga0209804_1021336All Organisms → cellular organisms → Bacteria3370Open in IMG/M
3300026343|Ga0209159_1090167Not Available1356Open in IMG/M
3300026524|Ga0209690_1110791All Organisms → cellular organisms → Bacteria1102Open in IMG/M
3300027655|Ga0209388_1003748All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium3802Open in IMG/M
3300027748|Ga0209689_1038511All Organisms → cellular organisms → Bacteria2771Open in IMG/M
3300027748|Ga0209689_1078287All Organisms → cellular organisms → Bacteria1758Open in IMG/M
3300027765|Ga0209073_10505781Not Available510Open in IMG/M
3300027875|Ga0209283_10623230All Organisms → cellular organisms → Bacteria681Open in IMG/M
3300031231|Ga0170824_109826288All Organisms → cellular organisms → Bacteria708Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil30.10%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil29.13%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil21.36%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil10.68%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.94%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.97%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.97%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.97%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.97%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300010095Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010104Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010108Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010119Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010125Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010126Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012375Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012379Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012390Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012392Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012397Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012398Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012399Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012404Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012405Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026277Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026305Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25384J37096_1003660123300002561Grasslands SoilIIVVTGGMPQAATAQLKDMGVKVIVNKSEGMPAVVDAMRQALQRRKVA*
Ga0066683_1061748213300005172SoilGGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0066680_1002268233300005174SoilVTGGMPEAASAQLRGMGVKVIVNKTDGMPAVVEAMRQALKRRKAA*
Ga0066680_1019135123300005174SoilEAASAQLRQMGVKVIVNKGDGMPAVVDAMRQALQRRKAA*
Ga0066680_1021977013300005174SoilRKLDSEIIVVTGGIPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0066673_1010143113300005175SoilIPEAASAQLRDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0066688_1017997823300005178SoilVTGGIPEAASSQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0066685_1069099623300005180SoilPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0066676_1007081613300005186SoilEAASAQLRQMGVQTIVSKTDGMPGVVEAMRQALKRRKAA*
Ga0066686_1009626023300005446SoilTGGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0066697_1003994913300005540SoilRKLDAEIIVVTGGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0070695_10002897113300005545Corn, Switchgrass And Miscanthus RhizosphereVIVVTGGMPDEAAVELRRMGVKVILNKSAGMPAVVDAMREALRRRKAA*
Ga0066701_1033458713300005552SoilVTGGIPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0066692_1000647313300005555SoilAVELREMGVKTIVNKVEGMQAVVEAMQLALKRRKVA*
Ga0066698_1098709213300005558SoilDQAAVALRQMGVKVILNKAAGMPAVVEAMGEALRRRKAA*
Ga0066700_1101424113300005559SoilAASAQLKSMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0066670_1002900933300005560SoilSAQLRDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0066693_1001570913300005566SoilAQLRDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0066702_1019743123300005575SoilVVTGGMPEQAAVELRQMGVKVILNKSAGMPAVVDAMREALRRRKAA*
Ga0066652_10044119913300006046SoilEIIVVTGGIPEAASAQLRDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0066665_1026007833300006796SoilRPEAAGAQRRQMGVKVIVNKADGMPGVVDAMRQALKRRKAA*
Ga0066660_1022430323300006800SoilVIVVTGGMPEKAAVELREMGVKTIVNKVAGMQAVVEAMQQALKRRKVA*
Ga0075435_10003318133300007076Populus RhizosphereVQLRQMGVKMILNKAEGMPAVVDAMREALRRRKAA*
Ga0066710_10013129733300009012Grasslands SoilGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA
Ga0099828_1017241713300009089Vadose Zone SoilQATGELRRMGVKVILNKSEGMPAVVDAMREALRRRKAA*
Ga0099828_1079983023300009089Vadose Zone SoilMPEQATGELRRMGVKVILNKSEGMPAVVDAMREALRRRKAA*
Ga0127475_103242113300010095Grasslands SoilAASAQLRDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0127446_109988123300010104Grasslands SoilAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0127474_101770523300010108Grasslands SoilGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0127452_116663913300010119Grasslands SoilGIPEMATKQLKDMGVKVIVNKSEGMPAVMEAVQEALRKRKVA*
Ga0127443_113231913300010125Grasslands SoilPETAAVELREMGVKTIVNKVDGMQAVVEAMQQALKRRKVA*
Ga0127482_101804813300010126Grasslands SoilAEVIVVTGGMPEAAAAQLRQMGVKVIVNKADGMPGVVDAMRQALKRRKAA*
Ga0134070_1018033913300010301Grasslands SoilAASLRKLGVKTIVNKADGIAAVVEALRQALQRRKAA*
Ga0134082_1001044013300010303Grasslands SoilGIPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0134088_1009178313300010304Grasslands SoilAVLRRFGVKVILNKAEGMPAVVEALGTALKRQRGKAA*
Ga0134080_1006223923300010333Grasslands SoilMVVTGGMPAEAAVELRQMGVKVILNKSEGMPAVVDAMREALRRRKAA*
Ga0134080_1026198333300010333Grasslands SoilSAQLRQMGVQTIVSKTDGMPGVVEAMRQALKRRKAA*
Ga0134071_1013031223300010336Grasslands SoilGMPPEAAVQLRQMGVKVILNKSEGMPAVVDAMREALRRRKAA*
Ga0134126_1016040733300010396Terrestrial SoilLDADVIVVTGGMPDEAAVELRRMGVKVILNKSAGMPAVVDAMREALRRRKAA*
Ga0137389_1018607813300012096Vadose Zone SoilATGELRRMGVKVILNKSEGMPAVVDAMREALRRRQAA*
Ga0137364_1058629523300012198Vadose Zone SoilASAQLRDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0137399_1003262413300012203Vadose Zone SoilPEAASAQLKGMGVKVIVSKAEGMPAVVDAMRQALQRRKVA*
Ga0137362_1001737113300012205Vadose Zone SoilAAGELRRMGVQVILNTSEGMPAVVDAMREALRRRKAA*
Ga0137380_1034342613300012206Vadose Zone SoilPEAASAQLRGMGVKVIVNKADGMPALVDAMRQALKRRKAA*
Ga0137379_1006838613300012209Vadose Zone SoilAMAELRRVGVKVVVNKAEGMPAVVDAMRQALQRRKAA*
Ga0137379_1054176313300012209Vadose Zone SoilSSQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0137379_1100020123300012209Vadose Zone SoilELRRVGVKVVVNKAEGMPAVVDAMRQALQRRKAA*
Ga0137377_1006256013300012211Vadose Zone SoilRKLDSEIIVVTGGIPEAASSQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0137370_1005165433300012285Vadose Zone SoilALRQMGVKVILNKSAGMPAVVDAMREALRRRKAA*
Ga0137387_1014965023300012349Vadose Zone SoilAEIIVVTGGMPQAATAQLKDMGVKVIVNKSAGMPAVVDAMRQALQRRKVA*
Ga0137386_1021200113300012351Vadose Zone SoilLDSEIIVVTGGIPEAASSQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0137371_1004460613300012356Vadose Zone SoilEAASSQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0137385_1042457623300012359Vadose Zone SoilGRKLDAEIIVVTGGMPQTATAQLKDMGVKVIVNKSEGMPAVVDAMRQALQRRKVA*
Ga0134034_103093023300012375Grasslands SoilAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0134058_101526923300012379Grasslands SoilLDAEVLVVTGGMPEAAGNELREMGVKVILSKAEEMPAVVEAMRQALQRRKAA*
Ga0134058_122978613300012379Grasslands SoilEIIVVTGGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0134054_114093123300012390Grasslands SoilMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0134043_102172913300012392Grasslands SoilAQLKDMGVKVIVNKSEGMPAVVDAMRQALQRRKVA*
Ga0134056_109953723300012397Grasslands SoilRKLDAEIIVVTGGMPQAATAQLKDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0134051_115944313300012398Grasslands SoilQLAVTGGIPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0134061_100675013300012399Grasslands SoilIIVVTGGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0134024_126361323300012404Grasslands SoilGIPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQAFQKRKVA*
Ga0134041_125010623300012405Grasslands SoilLDSEIIVVTGGIPEAASAQLRDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0134041_133739423300012405Grasslands SoilVELREMGVKTIVNKVEGMQAVVEAMQQALKRRKVA*
Ga0134041_142045723300012405Grasslands SoilVVTGGIPEAASAQLRDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0137398_1007729533300012683Vadose Zone SoilDAEVIVVTGGMPEQAAGELRRMGVKVILNKSEGMPAVVDAMREALRRRKAA*
Ga0137398_1029301623300012683Vadose Zone SoilGELRRMGVKVILNKSEGMPAVVDAMREALRRRKAA*
Ga0153915_1056388523300012931Freshwater WetlandsDAEVIVVTGGMPEAAAVALRQMGVKVIVNKIDGMQAVVEAMRQALQRRQQAA*
Ga0134076_1048845813300012976Grasslands SoilLDSEIIVVTGGIPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA*
Ga0134081_1000153113300014150Grasslands SoilAEIIVVTGGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0134081_1004557113300014150Grasslands SoilIIVVTGGIPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA*
Ga0134078_1013643923300014157Grasslands SoilGMPERAAVELREMGVKTIVNKVEGMQAVVEAMQQALKRRKVA*
Ga0134078_1021470313300014157Grasslands SoilLDAEVMVVTGGMPAEAAVELRQMGVKVILNKSEGMPAVVEAMREALRRRKAA*
Ga0137411_133947933300015052Vadose Zone SoilMPDEAAVELRRMGVKVILNKSAGMPAVVDAMREALRRRKAA*
Ga0134072_1010179423300015357Grasslands SoilMEVTGGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA*
Ga0134085_1021955623300015359Grasslands SoilGGMPAEAAVELRQMGVKVILNKSEGMAAVVEAMREALRRRKAA*
Ga0066655_1001494833300018431Grasslands SoilGRKLDAEIIVVTGGMPQAATAQLRDMGVKVIVNKSEGMPAVVEAMRQALKRRKVA
Ga0066667_1127757823300018433Grasslands SoilVVGGGVPETATKQLKAMGVKVIVNKSEGMPAVMEAVQEALRRRKVA
Ga0066669_1009058623300018482Grasslands SoilAEVIVVTGGMPERAAVELREMGVKTIVNKVEGMQAGVEAMQQALKRRKVA
Ga0193755_103572613300020004SoilAEVMVVTGGMPEDAAVELRRMGVKVILNKSAGMPAVVDAMRDALRRRKAA
Ga0137417_134137223300024330Vadose Zone SoilMPDEAAVELRRMGVKVILNKSAGMPAVVDAMREALRRRKAA
Ga0207646_1010699113300025922Corn, Switchgrass And Miscanthus RhizosphereVTGGMPEAVAVELRQMGVKTIVNKAEGMQSVVEAMQQALKRRKVA
Ga0209350_103440013300026277Grasslands SoilDSEIIVVTGGIPEAASTQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA
Ga0209235_102132133300026296Grasslands SoilMPQAATAQLKDMGVKVIVNKSEGMPAVVDAMRQALQRRKVA
Ga0209237_122733513300026297Grasslands SoilMPEQAAGELRQMGVKVILNKSAGMPAVVEAMREALRRRKAA
Ga0209236_108045113300026298Grasslands SoilIPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA
Ga0209688_104552213300026305SoilGMPERAAVELREMGVKTIVNKVEGMQAVVEAMQQALKRRKVA
Ga0209761_101251413300026313Grasslands SoilTKQLKDMGVKVIVNKSEGMPAVMEAVQEALRRRKVA
Ga0209761_102437233300026313Grasslands SoilGMPEAASAQLRGMGVKVIVNKADGMPALVDAMRQALKRRKAA
Ga0209687_112070323300026322SoilIVVTGGMPERAAVELREMGVKTIVNKVEGMQAVVDAMQQALKRRKVA
Ga0209470_110241613300026324SoilEAASAQLRQMGVQTIVSKTDGMPGVVEAMRQALKRRKAA
Ga0209803_102220733300026332SoilPAEAGVQLRQMGVKVILNKSEGMPAVVEAMREALRRRKAA
Ga0209377_106416123300026334SoilMPEAASAQLRQMGVKVIVNKGDGMPAVVDAMRQALQRRKAA
Ga0209804_101001813300026335SoilEVMVVTGGMPAEAAVQLRQMGVKVILNKSEGMPAVVDAMREALRRRKAA
Ga0209804_102133613300026335SoilIPEAASTQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA
Ga0209159_109016713300026343SoilAQLRQMGVQTIVSKTDGMPGVVEAMRQALKRRKAA
Ga0209690_111079123300026524SoilVTGGIPEAASAQLKDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA
Ga0209388_100374833300027655Vadose Zone SoilVTGGMPEKATGELRRMGVKVILNKSEGMPAVVDAMREALRRRQAA
Ga0209689_103851133300027748SoilAASSQLKDMGVKVIVSKAEGMPAVVEAMRQALQKRKVA
Ga0209689_107828723300027748SoilAASSQLKDMGVKVIVSKAEGMPAVVEAMRQALQRRKVA
Ga0209073_1050578113300027765Agricultural SoilVIVVTGGMPDAAAVALRQMGVKTIVSKGEGMPAVVDAMRQALQRRKVA
Ga0209283_1062323013300027875Vadose Zone SoilEQATGELRRMGVKVILNKSEGMPAVVDAMREALRRRKAA
Ga0170824_10982628813300031231Forest SoilVTGGMPEAAGKELREMGVKVILNKVEGMPAVVEAMRQALKRRKAA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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