NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F098987

Metagenome Family F098987

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098987
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 54 residues
Representative Sequence MVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAVMATAVFATAFLAP
Number of Associated Samples 89
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 61.17 %
% of genes from short scaffolds (< 2000 bps) 58.25 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (62.136 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(36.893 % of family members)
Environment Ontology (ENVO) Unclassified
(54.369 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(67.961 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 55.56%    β-sheet: 0.00%    Coil/Unstructured: 44.44%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF13185GAF_2 6.80
PF13561adh_short_C2 2.91
PF01274Malate_synthase 1.94
PF00106adh_short 0.97
PF02934GatB_N 0.97
PF13424TPR_12 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG2225Malate synthaseEnergy production and conversion [C] 1.94
COG0064Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunitTranslation, ribosomal structure and biogenesis [J] 0.97
COG2511Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domainTranslation, ribosomal structure and biogenesis [J] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms62.14 %
UnclassifiedrootN/A37.86 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002558|JGI25385J37094_10216850All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi511Open in IMG/M
3300002908|JGI25382J43887_10003265All Organisms → cellular organisms → Bacteria7355Open in IMG/M
3300005177|Ga0066690_10376255All Organisms → cellular organisms → Bacteria → Proteobacteria964Open in IMG/M
3300005179|Ga0066684_10283668All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1096Open in IMG/M
3300005450|Ga0066682_10255871All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1127Open in IMG/M
3300005471|Ga0070698_100074614All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3397Open in IMG/M
3300005536|Ga0070697_101308503All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium647Open in IMG/M
3300005546|Ga0070696_101195723All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi642Open in IMG/M
3300005552|Ga0066701_10525819All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi729Open in IMG/M
3300005559|Ga0066700_10158170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1540Open in IMG/M
3300005561|Ga0066699_10127621All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1712Open in IMG/M
3300005561|Ga0066699_10867900All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi631Open in IMG/M
3300005569|Ga0066705_10408510All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi850Open in IMG/M
3300005576|Ga0066708_10938640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi539Open in IMG/M
3300005598|Ga0066706_10690783All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi810Open in IMG/M
3300005598|Ga0066706_11202863All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi575Open in IMG/M
3300006034|Ga0066656_11005013All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi535Open in IMG/M
3300006797|Ga0066659_10333968All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1169Open in IMG/M
3300006914|Ga0075436_100409262All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi984Open in IMG/M
3300009012|Ga0066710_103908043All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi558Open in IMG/M
3300010320|Ga0134109_10072196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1172Open in IMG/M
3300010323|Ga0134086_10349674All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi584Open in IMG/M
3300010335|Ga0134063_10128987All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1162Open in IMG/M
3300010335|Ga0134063_10336946All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi731Open in IMG/M
3300010336|Ga0134071_10278503All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_68_21837Open in IMG/M
3300011270|Ga0137391_11531313All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi511Open in IMG/M
3300012200|Ga0137382_10741433All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi705Open in IMG/M
3300012207|Ga0137381_11601196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi542Open in IMG/M
3300012361|Ga0137360_11016139All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi716Open in IMG/M
3300012927|Ga0137416_11094461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi715Open in IMG/M
3300012972|Ga0134077_10121908All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1023Open in IMG/M
3300015264|Ga0137403_11411498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi545Open in IMG/M
3300017656|Ga0134112_10223535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_68_21741Open in IMG/M
3300018468|Ga0066662_10162134All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1710Open in IMG/M
3300018482|Ga0066669_12224795All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi521Open in IMG/M
3300021078|Ga0210381_10277009All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi601Open in IMG/M
3300025981|Ga0207640_12185820All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi502Open in IMG/M
3300026297|Ga0209237_1223307All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi586Open in IMG/M
3300026300|Ga0209027_1132975All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi859Open in IMG/M
3300026301|Ga0209238_1196947All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi591Open in IMG/M
3300026314|Ga0209268_1173986All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi530Open in IMG/M
3300026317|Ga0209154_1117419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1126Open in IMG/M
3300026318|Ga0209471_1038591All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2280Open in IMG/M
3300026320|Ga0209131_1251745All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi709Open in IMG/M
3300026329|Ga0209375_1172897All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi871Open in IMG/M
3300026330|Ga0209473_1119172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1095Open in IMG/M
3300026334|Ga0209377_1116552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1080Open in IMG/M
3300026529|Ga0209806_1150738All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi887Open in IMG/M
3300026532|Ga0209160_1144617All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1108Open in IMG/M
3300026532|Ga0209160_1151153All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1064Open in IMG/M
3300026536|Ga0209058_1192004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi864Open in IMG/M
3300026537|Ga0209157_1107886All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1309Open in IMG/M
3300027748|Ga0209689_1023304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3788Open in IMG/M
3300027748|Ga0209689_1318236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi599Open in IMG/M
3300028536|Ga0137415_10511932All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1008Open in IMG/M
3300028718|Ga0307307_10024754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1679Open in IMG/M
3300028718|Ga0307307_10048243All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1242Open in IMG/M
3300028744|Ga0307318_10245456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi623Open in IMG/M
3300028771|Ga0307320_10035775All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1815Open in IMG/M
3300028807|Ga0307305_10056962All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1801Open in IMG/M
3300028814|Ga0307302_10392535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi686Open in IMG/M
3300028828|Ga0307312_10556281All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi758Open in IMG/M
3300028884|Ga0307308_10494849All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium586Open in IMG/M
3300031720|Ga0307469_11366835All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi674Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil36.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil10.68%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.74%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.77%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil6.80%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.85%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.94%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.97%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.97%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.97%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.97%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.97%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.97%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015079Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6b, vegetation/snow interface)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018053Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026307Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026330Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027395Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028744Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028799Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25385J37094_1021685023300002558Grasslands SoilMVGEVTFAVLGVLFLIADIRTFASAFQLTFYGQPNSTLGIMAIAAFATAFLAPLLGWRLGPR
JGI25382J43887_1000326583300002908Grasslands SoilMVGEVTFAVLGVLFLIADIRTFGSTFQLTFYGQPNSTLGIMATATFATAFLAPLLGWRLGPR
Ga0062591_10196321123300004643SoilVIGEVTFGVIGLLLLFADVRTFASTFQQTFFGAPNTNLAIMAVSVFATSFLALLVSW
Ga0062594_10252394913300005093SoilVIGEVTFGVIGLLLLFADVRTFASTFQQTFFGAPNTNLAIMAVSVFATSFLALLVSWRLGPRRALGI
Ga0066690_1037625523300005177SoilMIGEVAFGVIGLLLLLADIRIFASTFQQTFYGTPSTQLAVMAGAVFATSFLAPLVGWRLGPRRSVALSAALLGIA
Ga0066684_1028366823300005179SoilMFGEVTFAVLGVLFLIYDVRTFASTFQQTFYGQANTTLALLAGGVFATSLLAPIVGWRLGPRRSVGLGAA
Ga0070694_10167163223300005444Corn, Switchgrass And Miscanthus RhizosphereVTFGVIGLLLLFADVRTFASTFQQTFFGAPNTNLAIMAVSVFATSFLALLV
Ga0066682_1025587113300005450SoilMVGEVTFAVIGLIFLIADVRTFSSTFQQTFFGQSNTTLAIMATAVFATSF
Ga0066681_1002974313300005451SoilMVGEVTFAVIGVLFLIADVRTFSSTFQQTFYGQSNTTLAVMATAVFATSFLAPLVGWRLGPKRSVGMSAAMLG
Ga0070706_10050022023300005467Corn, Switchgrass And Miscanthus RhizosphereVELTFGIIGLLFLFADIRTFTSTFQQTFFGAPTTQLALMATAVFLTSFLGLFVAWRL
Ga0070698_10007461413300005471Corn, Switchgrass And Miscanthus RhizosphereMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAIIATAVFATSFLSPIVGW
Ga0070699_10054772813300005518Corn, Switchgrass And Miscanthus RhizosphereMLSEVTFAVIGLLFLLSDIRTWTSTFQLTFFGYSNTQLAIMAGAVFATSFLAPLVGWRIGPRRSTALCGAILGI
Ga0070697_10130850313300005536Corn, Switchgrass And Miscanthus RhizosphereMVGEVTFAVIGLLLLIADIRTFSSTFQQTFFGQSNTTLAVIATAVFATSFLSPIVGWRLGPK
Ga0070696_10119572313300005546Corn, Switchgrass And Miscanthus RhizosphereMVGEVTFAVIGLLFLIADVRTFSSTFQQTFFGQSNTTLAVMATAVFATSFLAPLVGWRLGPKRSVGMSAAMLGI
Ga0066701_1052581923300005552SoilMVGEVTFAVIGLLFLIADVRTFSSTFQQTFYGQSNTTLAIMATAVFATSFLAPLVGWRLGPKRSVGM
Ga0066695_1002149743300005553SoilVIGEVTFGVIGLLFLFADLRTFSSTFQQTFFGASNTNLA
Ga0066692_1060665623300005555SoilVIGEVTFGVIGLLFLFADLRTFSSTFQQTFFGASNTNLAV
Ga0066698_1031284523300005558SoilVLSEVTFAVLGLLFLFADIRTWSSTFQLTFFGSTNTQLA
Ga0066700_1015817023300005559SoilMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAVMATAVFATAFLAP
Ga0066699_1012762113300005561SoilMVGEVTFAVLGVLFLIADIRTFASTFQLTFYGQPNSTLG
Ga0066699_1058107823300005561SoilMLSEVTFAVLGLLFLFADIRSWTSTFQLTFFGSTNTQLAIMAGAVFATSFLSPIVG*
Ga0066699_1086790013300005561SoilMVGEVTFAVIGLLFLIADVRTFSSTFQQTFYGQSNTTLAVMATAVFATSFLAPLV
Ga0066705_1040851013300005569SoilMLGEVTFAVIGLLFLIADVRTFSSTFQQTFFGQSNTTLAVMATAVFATSFLAPIVGWRLGPKRSV
Ga0066708_1093864023300005576SoilMIGEVAFGVIGLLLLLADIRIFASTFQQTFYGTSSTQLAVMAGAVFATSFLAPLVGWRLGPRRSVALSAALLGIA
Ga0066706_1068132023300005598SoilMLGEVTFAVIGLLFLIADVRTFSSTFQQTFFGQSNTTLAVMATAVFATSFLAPIVGWRLG
Ga0066706_1069078323300005598SoilMLGEVTFAVIGLLFLVADVRTFSSTFQQTFFGQSNTTLAVMATAVFATSFLAPIVGW
Ga0066706_1120286313300005598SoilMIGEVAFGVIGLLLLLADIRIFASTFQQTFYGTSSTQLAVMAGAVFATSFLAPLVGWRLGPRRSVALSAALLGI
Ga0066656_1100501313300006034SoilMVGEVTFAVIGLLFLIADIRMFASTFQLTYYGQPNTTLAVMATAVFATSLLAPLVGWRLGPKRSVALSAAMLGIATLI
Ga0066659_1033396813300006797SoilMFGEVTFAVLGVLFLIYDVRTFASTFQQTFYGQANTTLALLAGGVFATSLLAPIVGWRLGPRRSVGLGAAMLGIATL
Ga0066659_1059104823300006797SoilVLSEVTFAVLGLLFLFADIRTWSSTFQLTFFGSTNTQLAIM
Ga0075430_10095428123300006846Populus RhizosphereVIGEVTFGVIGLLFLLADIRTFSSTFQLTFFGAPNTNLAVVAIAVF
Ga0075425_10001725373300006854Populus RhizosphereVIGEVTFGVIGLLFLFADLRTFSSTFQLTFFGASNTNLAVAAVAV
Ga0075425_10025171313300006854Populus RhizosphereVIGEVTFGVIGLLFLFADVRTFSSTFQQTFFSAPMQTQAIMATAVFLL
Ga0079217_1030557213300006876Agricultural SoilVIGEVTFGVIGLVFLFADLRTFSSTFQLTFFGAPNTNLGVAAAAVFATSFLAI
Ga0075436_10040926223300006914Populus RhizosphereMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAIIATAVF
Ga0066710_10390804323300009012Grasslands SoilVIGEVAFAVIGLLFLIADIRTFSSSFQLTFYGQSNTTLAIMATAVFATSLLSP
Ga0066709_10229601423300009137Grasslands SoilVELTFGIVGLLFLFADVRTFSSTFQQTFFGAPTTQQA
Ga0114129_1070920413300009147Populus RhizosphereVIGEVTFGVIGLLFLFADLRTFSSTFQQTFFGAPNTNLAVAALAV
Ga0134109_1007219613300010320Grasslands SoilMLGEVTFAVIGLLFLIADVRTFSSTFQQTFYGQSNTTLAIMATAVFATSFLAPLVG
Ga0134086_1034967423300010323Grasslands SoilMVGEVTFAVIGLLFLIADVRTFSSTFQQTFYGQSNTTLAVMATAVFATSFLAPLVGWRLGPKRSVGMCA
Ga0134063_1012898713300010335Grasslands SoilMFGEVTFAVLGVLFLIYDVRTFASTFQQTFYGQANTTLALLAGGVFATSLLA
Ga0134063_1033694613300010335Grasslands SoilMVGEVTFAVIGLLFLIADIRMFASTFQLTYYGQPNTT
Ga0134071_1027850313300010336Grasslands SoilMVGEVTFAVLGVLFLIADIRTFASAFQLTFYGQPNSTLGIMAIAAFATAFLAPLLGWRLGPRRSVA
Ga0137391_1153131323300011270Vadose Zone SoilMVGELTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAIIATAVFATSFLSPIVGWRLGPKRSVGLSAAMLGIAT
Ga0137382_1074143323300012200Vadose Zone SoilVIGEVAFAVIGLLFLIADVRTFASTFQLSLYGTPS
Ga0137381_1160119613300012207Vadose Zone SoilMVGEVTFAVIGLLLLVADIRTFSSTFQQTFFGQSNTTLAVIATA
Ga0137360_1101613923300012361Vadose Zone SoilMVGEVTFAVIGLLFLIADVRTFSSTFQLTFYGQSSTTLAIMATAVFATSFLAPIVGW
Ga0137416_1109446123300012927Vadose Zone SoilMVGEVTFAVIGLLFLIADVRTFSSTFQQTFFGQSNTTLAVMAVAVFATSFLAPFVGWRLGPKRSVGL
Ga0137416_1213431213300012927Vadose Zone SoilVIGEVTFGVIGLLFLFADIRTFASTFQQTFFGVPSTTQGIMALAVF
Ga0153916_1171041013300012964Freshwater WetlandsVIGEVTLGVVGVLFLLADVRTFASTFQQSFFGAPNTQLAIMAASVFATSFL
Ga0134077_1012190813300012972Grasslands SoilMVGEVTFAVLGVLFLIADIRTFASAFQLTFYGQPNSTLGIMAIAAFATAFLAPLLGWRLGPRRSVAVSGAILGLA
Ga0167657_100053173300015079Glacier Forefield SoilVIGEVLFGVIGFLFLFADVRTFASTFQLTFFGAPNTTLAVMAVVVFAT
Ga0137403_1141149813300015264Vadose Zone SoilMVGEVTFAVIGLLFLIADIRTFSSTFQLTFFGQSNTTLAIMATSVF
Ga0134112_1022353513300017656Grasslands SoilMVGEVTFAVLGVLFLIADIRTFASAFQLTFYGQPNSTLGIMAIAAFATAFLAP
Ga0184608_1034671123300018028Groundwater SedimentVIGEVTFGVIGLLFLFADLRTFSSTFQLTFFGAPNTNLGVAAMAVFAT
Ga0184608_1050360813300018028Groundwater SedimentVIGEVTFGVIGLLFLFADLRTFSSTFQLTFFGAPNTNLGVA
Ga0184626_1012100413300018053Groundwater SedimentVIGEVTFGVIGLLFLFADLRTFSSTFQLTFFGAPNTNLGVAAAAVFATS
Ga0066662_1016213413300018468Grasslands SoilMVGEVTFAVIGLLFLIADVRTFSSTFQQTFYGQSNTTLA
Ga0066669_1222479513300018482Grasslands SoilMVGEVTFAVIGLLFLIADIRMFSSTFQLTFFVQSTTTLAILTTSVFATVFLAPIVAARLGPTRSVGM
Ga0210381_1027700913300021078Groundwater SedimentMVGEVTFAVIGLLLLIADIRMFSSTFQLTFFGQSNTTLAI
Ga0207684_1045638613300025910Corn, Switchgrass And Miscanthus RhizosphereVELTFGIIGLLFLFADIRTFTSTFQQTFFGAPTTQLALMDEYP
Ga0207684_1135263513300025910Corn, Switchgrass And Miscanthus RhizosphereVIGAVALGVIGLLFLFADIRTFASTFQQTYFGVSTTQ
Ga0207686_1114214323300025934Miscanthus RhizosphereVTFGVIGLLLLFADVRTFASTFQQTFFGAPNTNLAIMAVSVFATSFLALLVSWRLGPRRALGIAGLL
Ga0207709_1032628613300025935Miscanthus RhizosphereVIGEVTFGVIGLLFLFADLRTFSSTFQLTFFGAPN
Ga0207640_1218582013300025981Corn RhizosphereMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAIIATAVFATSFLAPLVGWRLG
Ga0209237_122330723300026297Grasslands SoilMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAVMATA
Ga0209027_113297513300026300Grasslands SoilMVGEVTFAVIGLLFLIADVRTFSSVFQQTFFGQSNTTLAVMATAVFATSLLAPIVGWR
Ga0209238_119694713300026301Grasslands SoilMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAIIATSVFATSFLAP
Ga0209469_113865223300026307SoilVIGEVTFGVIGLLFLFADIRTFASTFQQTFFGNSTTQLA
Ga0209239_121770413300026310Grasslands SoilVLSEVTFAVLGLLFLLADIRTWSSTFQLTFFDSTNTQLAVMA
Ga0209268_117398613300026314SoilMIGEVAFGVIGLLLLLADIRIFASTFQQTFYGTSSTQLAVMAGAVFATSFLAPLVGWRLG
Ga0209154_111741913300026317SoilMLGEVTFAVIGLLFLIADVRTFSSTFQQTFFGQSN
Ga0209471_103859133300026318SoilMVGEVTFAVIGLLFLIADVRTFSSVFQQTFFGQSNTTLAVMATAVFATSLLAPIVGWRLG
Ga0209131_125174523300026320Grasslands SoilMVGEVTFAVIGFLFLIADIRTFSSTFQLTFFGQSNTTLAVIATAVFATSFLAPIVGWRLGPKRSVGMSAAMLGIAT
Ga0209470_107724723300026324SoilVLSEVTFAVLGLLFLFADIRTWSSTFQLTFFGSTNTQLAIMAGAV
Ga0209375_117289733300026329SoilMVGEVTFAVIGLIFLIADVRTFSSTFQQTFFGQSNTTLAIMATAVFATSFLSP
Ga0209473_111917223300026330SoilMFGEVTFAVLGVLFLIYDVRTFASTFQQTFYGQANTTLALLAGGVFATSLLAPIVGWRLGPRR
Ga0209377_111655223300026334SoilMVGEVTFAVIGLLFLIADVRTFSSTFQQTFYGQSNTTLAILATAVFATSFL
Ga0209057_118619613300026342SoilVIGEVTFGVIGLLFLFADLRTFSSTFQQTFFGASNTNLAVAAIAV
Ga0209806_115073813300026529SoilMVGEVTFAVIGLLFLIADVRTFSSTFQQTFFGQSNTTLAVMAIA
Ga0209160_114461713300026532SoilMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAVMATAV
Ga0209160_115115323300026532SoilMVGEVTFAVLGVLFLIADIRTFASAFQLTFYGQPNNTLGIMAIAAFATAFLAPLLGWRLGPRRSVAV
Ga0209058_119200413300026536SoilMVGEVTFAVIGVLFLIADVRTFSSTFQQTFYGQSNTTLAVMATAVFATSFLAPLVGWRLGPKRSVGMS
Ga0209157_107020213300026537SoilVLSEVTFAVLGLLFLFADIRTWSSTFQLTFFGSTNTQLAIMAGAVFATSFLAPL
Ga0209157_110788613300026537SoilMVGEVTFAVIGLLFLIADVRTFSSTFQQTFYGQSNTTLAIMATAVFATSFLAPLVGWR
Ga0209474_1055968723300026550SoilVIGEVTFGVIGLLFLFADVRTFASTFQQTFYGAPT
Ga0209996_103884513300027395Arabidopsis Thaliana RhizosphereVIGEVTFGVIGLLFLFADLRTFSSTFQLTFFGAPNTNLGIAAAAV
Ga0209689_102330443300027748SoilMLGEVTFAVIGLLFLIADVRTFSSTFQQTFFGQSNTTLAVMATAVFATSFLAPIVGWRLGPKRSVGMSAAMLAIA
Ga0209689_131823613300027748SoilMIGEVAFGVIGLLLLLADIRIFASTFQQTFYGTSSTQLA
Ga0209590_1033748323300027882Vadose Zone SoilVIGEVTFGVIGLLFLFADLRTFSSTFQQTFFGASNTNLAVAA
Ga0137415_1051193223300028536Vadose Zone SoilMVGEVTFAVIGLLFLIADVRTFSSTFQQTFFGQSNTTLAVMAVAVFATSVLA
Ga0307311_1015769223300028716SoilVIGEVTFGVIGLLFLFADLRTFSSTFQLTFFGAPNTNL
Ga0307307_1002475423300028718SoilVIGEVTFAVIGLLFLIADIRMFSSTFQLTFYGQPNTTLAIMATAVFATAFLS
Ga0307307_1004824323300028718SoilMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAIIATSVFATSFLAPIVGWRLGPKRSVGLS
Ga0307318_1024545623300028744SoilMVGEVTFAVIGLLLLIADIRMFSSTFQLTFFGQSNTTLAIIATSVFATSFLAPIVGWRLGPKRSVGLSA
Ga0307320_1003577523300028771SoilMVGEVTFAVIGLLLLIADIRMFSSTFQLTFFGQSNTTLAFGS
Ga0307284_1001748013300028799SoilMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSNTTLAIIATSVFATSFLAPIV
Ga0307305_1005696223300028807SoilVIGEVTFAVIGLLFLIADIRMFSSTFQLTFYGQPNTTLAIMATAVFATAFLSPIVGW
Ga0307302_1039253523300028814SoilMVGEVTFAVIGLLFLIADIRTFSSTFQQTFFGQSN
Ga0307312_1055628113300028828SoilMVGEVTFAVIGLLFLIADIRTFSSTFQLTFFGQSNTTLAIIATAVFATSFLAPIVGWRLGPKRSL
Ga0307278_1009162313300028878SoilVIGEVTFGVIGLLFLFADLRTFSSTFQLTFFGAPNTNLGVAAAAVF
Ga0307308_1049484923300028884SoilVIGEVTFAVIGLLFLIADIRMFSSTFQLTFYGQPNTTLAIMATAVFATAFLSPI
Ga0307469_1136683523300031720Hardwood Forest SoilMVGEVTFAVIGLLLLIADIRTFSSTFQQTFFGQSNTTLAVIATSVFATSFLSPIVGWRLGPKRSVGM


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