NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098959

Metagenome / Metatranscriptome Family F098959

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098959
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 52 residues
Representative Sequence RSMRGLTPEQRDRLINSPQYRNAFSPQERGILGGAAHLPLAPGDGLQPEPPE
Number of Associated Samples 91
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.97 %
% of genes near scaffold ends (potentially truncated) 98.06 %
% of genes from short scaffolds (< 2000 bps) 81.55 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (74.757 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(14.563 % of family members)
Environment Ontology (ENVO) Unclassified
(46.602 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.573 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.
1JGI12270J11330_101207181
2JGI12270J11330_102496652
3JGIcombinedJ26739_1001365601
4JGIcombinedJ26739_1004793971
5JGI25615J43890_10700252
6Ga0070762_104954272
7Ga0075017_1002855501
8Ga0075019_100180751
9Ga0066660_111667441
10Ga0099829_105342341
11Ga0116214_13099131
12Ga0116225_13936322
13Ga0116225_14719623
14Ga0116105_11156111
15Ga0116115_11387201
16Ga0116112_11597372
17Ga0116122_11565932
18Ga0116106_13006921
19Ga0116217_106143961
20Ga0074044_105708291
21Ga0136449_1017344411
22Ga0136449_1031165591
23Ga0150983_111205221
24Ga0137392_100595721
25Ga0137399_110168433
26Ga0137361_107226703
27Ga0137419_118130912
28Ga0181518_105167801
29Ga0181538_107597301
30Ga0181523_104079191
31Ga0181531_102387512
32Ga0182011_103356631
33Ga0182019_107131162
34Ga0182024_101232821
35Ga0181522_107303771
36Ga0182030_104118354
37Ga0181511_14477931
38Ga0187848_102290532
39Ga0187850_102470421
40Ga0187819_100877611
41Ga0187879_103989851
42Ga0187847_108544852
43Ga0187778_110378382
44Ga0187781_106380762
45Ga0187816_100258501
46Ga0187891_12533381
47Ga0187810_101396931
48Ga0187889_101544953
49Ga0187857_101523601
50Ga0187867_100739714
51Ga0187855_108938591
52Ga0187887_100060911
53Ga0187887_104869651
54Ga0187887_105435542
55Ga0187858_107265242
56Ga0187784_104192441
57Ga0187770_100142741
58Ga0187770_107976571
59Ga0187770_115061263
60Ga0181508_13550641
61Ga0182031_11720181
62Ga0182031_13462255
63Ga0210385_109589752
64Ga0210390_102276861
65Ga0210392_106993371
66Ga0242665_100778112
67Ga0208034_10364272
68Ga0208689_10352254
69Ga0208191_10503161
70Ga0208819_10807482
71Ga0208188_10765491
72Ga0208188_10902402
73Ga0209131_10200296
74Ga0209735_10166061
75Ga0209733_10030686
76Ga0209221_10625461
77Ga0208827_10475214
78Ga0209530_10168781
79Ga0209038_101106233
80Ga0209517_1001069712
81Ga0209275_109008612
82Ga0209624_108218961
83Ga0209624_108652751
84Ga0302159_100293711
85Ga0302303_103074721
86Ga0247275_10125455
87Ga0246001_10230485
88Ga0311361_100465091
89Ga0311328_105313913
90Ga0311352_104969081
91Ga0311339_100852371
92Ga0311360_102008521
93Ga0310038_100099731
94Ga0265461_113889611
95Ga0302324_1002296706
96Ga0302324_1032998182
97Ga0170820_173874721
98Ga0302326_102593361
99Ga0307469_117014142
100Ga0307477_109192021
101Ga0311301_128815542
102Ga0307472_1001115301
103Ga0335077_108319162
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 31.25%    β-sheet: 0.00%    Coil/Unstructured: 68.75%
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Variant

5101520253035404550RSMRGLTPEQRDRLINSPQYRNAFSPQERGILGGAAHLPLAPGDGLQPEPPESequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
74.8%25.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Watersheds
Soil
Vadose Zone Soil
Peatlands Soil
Soil
Grasslands Soil
Soil
Forest Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Bog Forest Soil
Fen
Bog
Permafrost
Forest Soil
Soil
Fen
Palsa
Bog
Peat
14.6%4.9%10.7%2.9%4.9%11.7%4.9%2.9%5.8%2.9%8.7%5.8%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12270J11330_1012071813300000567Peatlands SoilTPEQRERLINSDQYKSAFTPQERALLSGTSHLPLAPGDGLNAQPPEE*
JGI12270J11330_1024966523300000567Peatlands SoilRRATRGIRDLTPEPCDQLINSEQYRNSFSLQERVILSGAAHLPLAPGDGLQPGPPE*
JGIcombinedJ26739_10013656013300002245Forest SoilRDLTPEQRDQLINSDQYKLSFSPRERFILGGAAHLPLAPGDSW*
JGIcombinedJ26739_10047939713300002245Forest SoilDQRDRLINSEPFRQAFSPFERHILMGAAHLPLAPGDVW*
JGI25615J43890_107002523300002910Grasslands SoilDRLVNSEQYRRAFSPQERHLLSGASRLPLAPGEGLPGESLE*
Ga0070762_1049542723300005602SoilDAIRGMRGLSPDQRDRLINSDQFGRQFTPYERNLLSGAARLPLAPGGLQ*
Ga0075017_10028555013300006059WatershedsAVNRAIRGMRDLTPEQRDRLINSDQYRRGFSPQERSLLEGASHLPLAPGGLQTAPPE*
Ga0075019_1001807513300006086WatershedsLLNSDRYMRDFSPQERGMLDGASRLPLAPGGLQGGPPE*
Ga0066660_1116674413300006800SoilLINSDQYRRAFSPQERWMLSGAAHLPLAPGDGLQSVPTE*
Ga0099829_1053423413300009038Vadose Zone SoilPAQRDQLINSDQYKRAFSPRERFILDGAAHLPLAPGEGLQGGPPEE*
Ga0116214_130991313300009520Peatlands SoilRSMRGLTPEQRERLINSDQYKSAFSPQERGLLAGASRLPLAPGDGLPGEPPEE*
Ga0116225_139363223300009524Peatlands SoilNRAIREMRGLTPDQRDQLINSQQYRNSFSLQERVILSGAAHLPLAPGDGLQTGPPE*
Ga0116225_147196233300009524Peatlands SoilAIRGMRDLTPDQRDRLINSDEYRNEFSPGERGLLRGASRLPLGPGEGLHPEPPD*
Ga0116105_111561113300009624PeatlandQAVNRAIRDMRSLSPDQRDQLINSQQYRNSFSLQERVILSGAAHLPLAPGDGLQTGPPE*
Ga0116115_113872013300009631PeatlandNSEQYRDSFSLQERVILSGAAHLPLAPGDGLQPEPPE*
Ga0116112_115973723300009636PeatlandLTPQQRDQLINSDQYKRAFTPQERGLLAGASRLPLAPGDGLHPEPPEE*
Ga0116122_115659323300009639PeatlandRQAVNRAIRSMRGLTPEQRDRLINSPQYRNAFSPQERGILGGAAHLPLAPGDGLQPEPPE
Ga0116106_130069213300009645PeatlandRQAVNRAIRGMRNLTPQQRDRLIDSDLFRNMYSPQERGLLRGASRLPLAPGDGLQPEPPE
Ga0116217_1061439613300009700Peatlands SoilQAVNRAIREMRGLTPAQRDQLINSGQYRSAFSPQERGILGGAAHLPLAPGDGW*
Ga0074044_1057082913300010343Bog Forest SoilEQRDQLIDSPQYRNAFSPQERAILGGAAHLPLAPGDGLPAGPPE*
Ga0136449_10173444113300010379Peatlands SoilQAIRSMRNLTPEQRDQLINSEQYSKAFSLQERVLLEGSAHLPLASGDGLQPEPPE*
Ga0136449_10311655913300010379Peatlands SoilQAIRSMRNLTPEQRDQLINSEQYSKAFSLQERVLLEGSAHLPLAAGDGLQPEPPE*
Ga0150983_1112052213300011120Forest SoilFEQFKQLPPARRQAVNRAIRDMRHLSPVQRDNLIDSDIFRNSFSPEERSLLHGAAHLPLAAGDGLQGDPPE*
Ga0137392_1005957213300011269Vadose Zone SoilRDLTPEQRDRLIDSNEYKSTFSPQERRLLGGASHLPLAPGEGLHAEPPEE*
Ga0137399_1101684333300012203Vadose Zone SoilIRGMRDLTPERRDQLINSDQYKRAFSPRERFILGGAAHLPLAPGESW*
Ga0137361_1072267033300012362Vadose Zone SoilRLIDSDEYRSAFSPQERRLLGGASRLPLAPGEGLHTEPPEE*
Ga0137419_1181309123300012925Vadose Zone SoilVDRAIRGMRDLTPERRDQLINSDQYKRAFSPRERFILGGAAHLPLAPGESW*
Ga0181518_1051678013300014156BogPDRRQAVNRAIREMRGLTPAQRDQLINSEQYRNSFSLQERVILSGAAHLPLAPGDGLPGPPE*
Ga0181538_1075973013300014162BogGMRDLTPAQRDRLINSDQYQRSFSLQERVILSGAAHLPLAPGDGLQPEPPE*
Ga0181523_1040791913300014165BogLINSDQYRNAFSPQERSILSGASHLPLAPGDGLNPEPPEE*
Ga0181531_1023875123300014169BogVNRAIRDMRHLTPIQRDNLIDSDIFRNSFSLEERSLLHGAAHLPLAAGDGLQGDPPE*
Ga0182011_1033566313300014496FenLTPEQRDRLINSPQYRSAFSPPERSILGGAAHLPLAPGDGLQPEPPE*
Ga0182019_1071311623300014498FenAIRGMRGLTPEQRDRLINSDQFRREFSPQERNLLGGASRLPLAPGDGLQAEPPE*
Ga0182024_1012328213300014501PermafrostVAVNRAIQGMRNLPPEQRDRLINSDQYRRAFSPQERWMLSGAAHLPLAPGDGLQPVPTE*
Ga0181522_1073037713300014657BogLINSDQYAHTFSLQERVILSGAAHLPLAPGDGLQSGPPE*
Ga0182030_1041183543300014838BogSPEQRDQLMNSDQFRKDFSPQERGLLNGASHLPLAPGDGLQAEPPE*
Ga0181511_144779313300016702PeatlandPQYRDSFPLQERVILSGAAHLPLAPGDGLQAAPPE
Ga0187848_1022905323300017935PeatlandRRQAVNQAIRSMRGLTPAQRDQLINSERYRYAFSPQERSILGGAAHLPLAPGDGLQPDPL
Ga0187850_1024704213300017941PeatlandRDQLINSDQYKRAFTPQERGLLTGASRLPLAPGDGLRAEPPEE
Ga0187819_1008776113300017943Freshwater SedimentIREMRGLTPEQRQRLINSDQYKSEFTPQERALLAGASRLPLAPGDGLHPEPPEE
Ga0187879_1039898513300017946PeatlandEQRDRLIDSRQYRNAFSPQERAILGGAAHLPLASGDGLQPEPPE
Ga0187847_1085448523300017948PeatlandNSEQYSKTFSLQERVLLDGAAHLPLAPGDGLQAAPPE
Ga0187778_1103783823300017961Tropical PeatlandVNRAIRDMRGLSPEERDRLINSNRYRSDFSPMERNILSGASQLPLASGGLQDAPPE
Ga0187781_1063807623300017972Tropical PeatlandMRGLTPEQRQRLIDSDQYKNQFTPQERALLAGASRLPLAPDPPEE
Ga0187816_1002585013300017995Freshwater SedimentEQRDQLINSEQYRNSFSLQERVILSGAAHLPLAPGDGLQPGPPE
Ga0187891_125333813300017996PeatlandNQAIRGMRGLTPEQRDRLINSPQYRKAFSPQERWILSGAAHLPLAPGDGLPAGPPE
Ga0187810_1013969313300018012Freshwater SedimentNQAIRGMRGLTPEQRDRLINSPQYRNAFSPQERGLLDRASRLPLAPGEGLHPEPLE
Ga0187889_1015449533300018023PeatlandLINSEQYRDSFSLQERVILSGAAHLPLAPGDGLQPEPPE
Ga0187857_1015236013300018026PeatlandRSMRGLTPEQRDRLINSPQYRNAFSPQERGILGGAAHLPLAPGDGLQPEPPE
Ga0187867_1007397143300018033PeatlandDQYRNAFSPQERSILSAASHLPLAPGDGLNPEPPEE
Ga0187855_1089385913300018038PeatlandEQRDELINSDQYRDSFSLQERVILSGAAHLPLAPGDGLQAAPPE
Ga0187887_1000609113300018043PeatlandNSAIRGMRDLNPAQRDRLINSEQYRREFSPQERGMLESAAHLPLAPGGLQ
Ga0187887_1048696513300018043PeatlandDLTPGQRDQLINSEQYRNTFSLQERVLLDGAAHLPLASGDGLQTAPPE
Ga0187887_1054355423300018043PeatlandVNAAIRQMRTLTPEQRDELINSDQYRDSFSLQERVILSGAAHLPLAPGDGLQAAPPE
Ga0187858_1072652423300018057PeatlandLPPARREAVNGAIRGMRDLTPDQRDRLIDSDQFQRDFSPQERSMLESAAHLPLAPGGLQTSPPE
Ga0187784_1041924413300018062Tropical PeatlandEMRGLTPEQRQRLINSDQYKNQFTPQERALLAGASRLPLAPEPPEE
Ga0187770_1001427413300018090Tropical PeatlandAVNSAIRSMRGMTPEQRERFLNSDQFRRDYSPSERNILNGASQLPLAPGGLPAGPPE
Ga0187770_1079765713300018090Tropical PeatlandLPPERRQAVNRAIRGMRDLTPQQRDRLINSEQFRRNFSPQERGMLDSASRLPLAPGGLQ
Ga0187770_1150612633300018090Tropical PeatlandREMRGLTPEQRDRLINSQQYQRSFSLQERVILSGAAHLPLAPGDGLQAEPPE
Ga0181508_135506413300019256PeatlandRRQAVNSAIRGMRDLNPAQRDRLINSEQYRREFSPQERGMLESAAHLPLAPGGLQ
Ga0182031_117201813300019787BogSSDCRPNRRQAVNQAIRSMRNLTPDQRDQLINSEQYSKTFSLQERVLLDGAAHLPLAPGDGLQAAPPE
Ga0182031_134622553300019787BogVSPDRRQAVNRAIRDMRDLTPEQRDQLINSEQYRNSFSLQERVTLSGAAHLPLAPGDGLQAEPPE
Ga0210385_1095897523300021402SoilLTPDQRDQLINSEQYRNSFSLQERVILSGAAHLPLAPGDGLQPEPPE
Ga0210390_1022768613300021474SoilMRGLTPDQRDRLINSDQFGRQFTPYERNLLSGAARLPLAPGGLQ
Ga0210392_1069933713300021475SoilGLTPEQRESLINSPQFQNAFSPQERGLLRGASRLPLAPGDGVQAPPE
Ga0242665_1007781123300022724SoilDRRQAVNRAIRGMRDLTPDERDRLIKSDQYKRAFSPRERFILDGAAHLPLAPGDSW
Ga0208034_103642723300025442PeatlandGLTPEQRDRLINSEQYRRAFSPKERGLLAGASRLPLAPGEGLRAEPPE
Ga0208689_103522543300025459PeatlandINSPQYRNAFSPQERWILGGAAHLPLAPGDGLPAGPPE
Ga0208191_105031613300025496PeatlandDRRQAVNRAIRGMRNLTPQQRDRLIDSDLFRNMYSPQERGLLRGASRLPLAPGDGLQPEPPE
Ga0208819_108074823300025498PeatlandDRRQAVNRAIREMRSLTPGQRDQLINSEQYRDSFSLQERVILSGAAHLPLAPGDGLQPEPPE
Ga0208188_107654913300025507PeatlandLSPDRRQAVNRAIREMRGLTPAQRDQFINSEQYRNSFSLQERVILSGAAHLPLAPGDGLQAGPPE
Ga0208188_109024023300025507PeatlandMRNLTPQQRDRLIDSDLFRNMYSPQERGLLRGASRLPLAPGDGLQPEPPE
Ga0209131_102002963300026320Grasslands SoilRAIRGMGDLTPEQRDRLVNSEQYRRAFSPQERHLLGGASRLPLAPGEGLPGESLE
Ga0209735_101660613300027562Forest SoilNSQQYRNAFSPRERFILGGAAHLPLASGDSLQGGPPEE
Ga0209733_100306863300027591Forest SoilPEQRDRLINSDQYRRAFSPQERWMLSGAAHLPLAPGDGLQPVPAE
Ga0209221_106254613300027609Forest SoilRASQLFEDFKQLPPARRQTVNRAIRDMRGLTPDQRDRLINSEPFRQAFSPFERHILMGAAHLPLAPGDVW
Ga0208827_104752143300027641Peatlands SoilLNRAIRSMRGLTPEQRERLINSDQYKSAFTPQERALLSGTSHLPLAPGDGLNAQPPEE
Ga0209530_101687813300027692Forest SoilASQLFEDFKQLPPARRQTVNRAIRDMRGLTPDQRDRLINSEPFRQAFSPFERHILMGAAHLPLAPGDVW
Ga0209038_1011062333300027737Bog Forest SoilRNLAPEQRDELINSDQYRDSYSLQERVILSGAAHLPLAPGDGLQAAPPE
Ga0209517_10010697123300027854Peatlands SoilRRATRGIRDLTPEPCDQLINSEQYRNSFSLQERVILSGAAHLPLAPGDGLQPGPPE
Ga0209275_1090086123300027884SoilDRRQAVNRAIGGMRGLTPDQRDQLINSEQYRNSFSLQERVILSGAAHLPLAPGDGLQPEPPE
Ga0209624_1082189613300027895Forest SoilRRRALNDAIRGMRGLSPDQRDRLINSDQFGRQFTPYERNLLSGAARLPLAPGGLQ
Ga0209624_1086527513300027895Forest SoilAVNRAIREMRGMTPEQRDQLINSDEYSNAFSLQERVLLEGAAHLPLAPGDGLQAEPPE
Ga0302159_1002937113300028646FenRGLPPEQRDQLINSDQYRRNFSPEERQLLDGASRLPLAPGGLQGAGPEN
Ga0302303_1030747213300028776PalsaLSPDRRQAVNRAIRDMRGLTPDQRDQLINSDQYAHTFSLQERVILSGAAHLPLAPGDGLQSGPPE
Ga0247275_101254553300029817SoilINSDQYKRAFTPQERGLLAGASRLPLAPGDGLNAQPPEE
Ga0246001_102304853300029889PeatLINSEQYRYAFSPQERGLLRGASRLPLAPGDGLQPEPPE
Ga0311361_1004650913300029911BogMRGMTPQQRDQLLNSDQFRSEYSPQERGLIGGASHLPLAPGDGLQAEPPE
Ga0311328_1053139133300029939BogMTPQQRDQLINSEKFRSKYSPQERGLIGGASHLPLAPGDGLQAEPPD
Ga0311352_1049690813300029944PalsaLTPDQRDQLINSEEYSRTFSLQERVLLEGAAHLPLAPGDGLQAEPPE
Ga0311339_1008523713300029999PalsaQRDQLINSEEYSRTFSLQERVLLEGAAHLPLAPGDGLQAEPPE
Ga0311360_1020085213300030339BogRDMRGLPPEQRDQLINSDQYRRNFSPEERQLLDGASRLPLAPGGLQGAGPEN
Ga0310038_1000997313300030707Peatlands SoilGLTPEQRERLINSDQYKSAFSPQERGLLAGASRLPLAPGDGLPGEPPEE
Ga0265461_1138896113300030743SoilARRQAVNRAIRDMRHLTPVQRDNLIDSDIFRNSFSAEERSLLHGAAHLPLAPGDGLQGDPPE
Ga0302324_10022967063300031236PalsaRQVFQQFKQLPPARRQAVNRAIRDMRHLTPVQRDNLIDSDIFRNSFSPEERSLLHGAAHLPLAAGDGLQGDPPE
Ga0302324_10329981823300031236PalsaRDMRGLTPDQRDQLINSDQYAHTFSLQERVILSGAAHLPLAPGDGLQSGPPE
Ga0170820_1738747213300031446Forest SoilDNAIQSMRHLTPEQRDQLINSDQYRRAFSPQERWLLSGAAHLPLAPGDGLQPVPTE
Ga0302326_1025933613300031525PalsaFKQLSPDRRQAVNRAIRDMRGLTPDQRDQLINSDQYAHTFSLQERVILSGAAHLPLAPGDGLQSGPPE
Ga0307469_1170141423300031720Hardwood Forest SoilRRRALNGAIRDMRGLTPDQRDRLINSDQFNRQFTPYERNLLNGASRLPLAPGGLQ
Ga0307477_1091920213300031753Hardwood Forest SoilDQYRRAFSPQERWLLSGAAHLPLAPGDGLQPVPTE
Ga0311301_1288155423300032160Peatlands SoilQFRQLPPGRRQAVNRAISGMRGLTPAQRDRLINSDQYQHSFSLQERVILSGAAHLPLAPGDGLQAEPPE
Ga0307472_10011153013300032205Hardwood Forest SoilVNRAIRGMRDLTPEQRDQLINSDEYKSAFSPQERRLLGGASQLPLAPGEGLQAEPPEQ
Ga0335077_1083191623300033158SoilREFQQLPANRRQAVNRAIRDMRNLSPEQRDRLINSNRYRSDFSPMERNILNGTSRLPLAPGGLGPE


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