NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F098907

Metagenome Family F098907

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098907
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 46 residues
Representative Sequence MHRYTYSPSQEALEKRRAAAMDMLAVLAIAAALTLLALAYFDILTF
Number of Associated Samples 50
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 84.47 %
% of genes near scaffold ends (potentially truncated) 18.45 %
% of genes from short scaffolds (< 2000 bps) 66.02 %
Associated GOLD sequencing projects 37
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (40.777 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(67.961 % of family members)
Environment Ontology (ENVO) Unclassified
(77.670 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(90.291 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.
1TBL_comb48_EPIDRAFT_100368712
2Water_1020154
3Ga0031655_102657262
4Ga0065861_11932372
5Ga0007809_100256335
6Ga0007809_100369424
7Ga0007833_11023802
8Ga0007862_10370972
9Ga0075464_100132011
10Ga0114973_1000233410
11Ga0114973_100248125
12Ga0114973_106209491
13Ga0114962_100263858
14Ga0114962_100270484
15Ga0114962_100290602
16Ga0114962_100354594
17Ga0114962_101069302
18Ga0114962_101205982
19Ga0114962_101304175
20Ga0114962_101817173
21Ga0114962_107134871
22Ga0114963_100597694
23Ga0114963_103240141
24Ga0114968_100993423
25Ga0114968_101395515
26Ga0114968_104112972
27Ga0114968_104287143
28Ga0114977_103164632
29Ga0114978_100928201
30Ga0114966_100272477
31Ga0114975_105796802
32Ga0114969_101461753
33Ga0114969_107827281
34Ga0114959_101011943
35Ga0114959_102801991
36Ga0114959_103699762
37Ga0114958_102589332
38Ga0114964_104882931
39Ga0114964_106176411
40Ga0114960_100112561
41Ga0114960_101548623
42Ga0114960_103704311
43Ga0114967_101763135
44Ga0114967_101906493
45Ga0114967_102670993
46Ga0136235_10040264
47Ga0133913_102366436
48Ga0133913_103813932
49Ga0133913_105575205
50Ga0133913_106439674
51Ga0133913_111973342
52Ga0133913_113282611
53Ga0133913_113360361
54Ga0133913_114474893
55Ga0133913_130656902
56Ga0133913_133138085
57Ga0133913_135116314
58Ga0136642_10048604
59Ga0136642_10075088
60Ga0136642_10114206
61Ga0136642_10325024
62Ga0136642_10517925
63Ga0136641_10958772
64Ga0181338_10049035
65Ga0214194_1100511
66Ga0214207_10108292
67Ga0208256_10078672
68Ga0208256_10106322
69Ga0207959_10005772
70Ga0207959_10104365
71Ga0208248_10379794
72Ga0208916_101813151
73Ga0209188_10046124
74Ga0209188_101077810
75Ga0209188_10213405
76Ga0209188_10706375
77Ga0209499_100029332
78Ga0209499_10501974
79Ga0209499_11479913
80Ga0209297_12689002
81Ga0209085_100020532
82Ga0209085_10039578
83Ga0209085_10535172
84Ga0209085_10590254
85Ga0209597_100027243
86Ga0209084_10061449
87Ga0209084_11975653
88Ga0209596_11063314
89Ga0209088_102760063
90Ga0209134_103452961
91Ga0209086_101543192
92Ga0209829_1000300114
93Ga0209829_102741423
94Ga0209829_103288342
95Ga0209246_100263474
96Ga0209354_100080518
97Ga0209777_101607723
98Ga0209777_101972971
99Ga0209777_102575711
100Ga0209777_109918012
101Ga0209400_10757506
102Ga0209191_13658812
103Ga0315274_117822602
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 51.35%    β-sheet: 0.00%    Coil/Unstructured: 48.65%
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51015202530354045MHRYTYSPSQEALEKRRAAAMDMLAVLAIAAALTLLALAYFDILTFCytopl.Extracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
59.2%40.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater
Freshwater
Freshwater Lake
Freshwater Lake Sediment
Freshwater Lake
Freshwater
Sediment
Freshwater
Aqueous
Marine
Estuary Water
2.9%8.7%3.9%4.9%68.0%5.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
TBL_comb48_EPIDRAFT_1003687123300000439FreshwaterMHRYTYKPSQEALEKRRAAAMDMIAVLIYSVALTVCALAYFDILTF*
Water_10201543300002930Estuary WaterMKYTYSPSREAIEKRRAAVMDLLTVLAIAGALTVLALAYFDILTF*
Ga0031655_1026572623300003852Freshwater Lake SedimentLTYKENIMHKYTYSPSREQVERRRAAMMDFFAVLVYSAALTLLALDYFDILTF*
Ga0065861_119323723300004448MarineMPDYTYSPSQEAFEKRRAAAMDMLAVLAYSVALTVLALAYFDILTF*
Ga0007809_1002563353300004807FreshwaterMHRYTYSPSQEQVERRRAAMMDFLAVLIYSAALTLLALDYFDILTF*
Ga0007809_1003694243300004807FreshwaterMHRYTYSPSQEQVERRRAAAMDMIAVLIYSVALTVCALAYFDILTF*
Ga0007833_110238023300006106FreshwaterMHRYTYKPSQEALEKRRAAAMDMIAVLIYSVALTVCALDYFDILTF*
Ga0007862_103709723300006108FreshwaterMHRYTYSPSQEQIERRRAAMMDFFAVLVYSAALTLLALDYFNILTF*
Ga0075464_1001320113300006805AqueousMHRYTYKPTQEALEKRRQAAMDFFAVLIYAAGLTLCALAYFDILTF*
Ga0114973_10002334103300009068Freshwater LakeMKYTYSPSREAIEKRRAAAMDLLTVLAIAGALTVLALAYFDILTF*
Ga0114973_1002481253300009068Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDLLAVLAIAAGLTLLGLAYFDILTF*
Ga0114973_1062094913300009068Freshwater LakeMHHHYTYSPSQEALEKRRAVAMDMLAVLAIAAGLTLLGLAYFDILTF*
Ga0114962_1002638583300009151Freshwater LakeMHRYTYSPSQEALEKRRAAAMDLLAVLAYSIGLTLLLLAWFDVLTF*
Ga0114962_1002704843300009151Freshwater LakeMHHHYTYKPSQEALEKRRAAAMDMLAVLAIAAGLTLLGLAYFDILTF*
Ga0114962_1002906023300009151Freshwater LakeMHRYTYSPSQEALEKRRAAAMDLLAVLAYSISLTLLLLAWFDVLTF*
Ga0114962_1003545943300009151Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDLLAVLVIAAGLTLLGLAYFDILTF*
Ga0114962_1010693023300009151Freshwater LakeMHRYTYKPSQEALEKRRAAAMDFFAVLVYAAALTALALAYFDILTF*
Ga0114962_1012059823300009151Freshwater LakeMHRYTYKPTQEALEKRRAAAMDILAVLAYAAALTVCALAYFDILTF*
Ga0114962_1013041753300009151Freshwater LakeMKYTYSPSQEALEKRRAAAMDLLAVLAIAAALTLLGLAYFDILTF*
Ga0114962_1018171733300009151Freshwater LakeMKYTYSPSQEKMEKRRAAAMDFLAVLAYSAVLTVCALAYFDILTF*
Ga0114962_1071348713300009151Freshwater LakeLEKRRAAAMDMLAVLAIAAALTLLALAYFDILTF*
Ga0114963_1005976943300009154Freshwater LakeMQVLIMHRYTYSPSQEALEKRRAAAMDMLAVLAYSVALTVLALAYFDILTF*
Ga0114963_1032401413300009154Freshwater LakeMHRYTYKPTQEALEKRRQAAMDMLAVLVYAAALTALALAYFDILTF*
Ga0114968_1009934233300009155Freshwater LakeMHRYTYKPTQEALEKRRAAAMDMLAVLAYSVALTVCALAYFDILTF*
Ga0114968_1013955153300009155Freshwater LakeMHHHYTYKPSQEALEKRRAAAMDLLAVLAIAAALTLLGLAYFDILTF*
Ga0114968_1041129723300009155Freshwater LakeMKYTYSPSREAIEKRRAAAVDFLTVLAIAGALTVLALAYFDILL*
Ga0114968_1042871433300009155Freshwater LakeMHHHYTYKPTQEALEKRRAAAMDMLAVLAIAAAITLLGLAYFDILTF*
Ga0114977_1031646323300009158Freshwater LakeMRHHYTYSPSQEALEKRRAAAMDLLAVLAIAGALTVLALAYFDILF*
Ga0114978_1009282013300009159Freshwater LakeMKYTYSPSQEKIEKRRAAAMDFLAVLAYSAVLTVCALAYFDILTF*
Ga0114966_1002724773300009161Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDFLAVLAYSAVLTVCALAYFDILTF*
Ga0114975_1057968023300009164Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDLLTVLAIAAGLTLLGLAYFDILTF*
Ga0114969_1014617533300009181Freshwater LakeMHHHYTYKPSQEALEKRRAAAMDILAVLAIAAGLTLLGL
Ga0114969_1078272813300009181Freshwater LakeREAIEKRRAAAMDFLTVLAISGALTVLALAYFDILTF*
Ga0114959_1010119433300009182Freshwater LakeMHRYTYSPSQEALEKRRAAAMDILAVLAYSVALTVLALAYFDILTF*
Ga0114959_1028019913300009182Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDLLAVLAIAAALTLLGL
Ga0114959_1036997623300009182Freshwater LakeMHRYTYKPTQEALEKRRAAAMDMLAVLAIAAALTVLALAYFDILTF*
Ga0114958_1025893323300009684Freshwater LakeMHRYTYSPSQEALEKRRAAAMDMLAVLAIAAALTLLALAYFDILTF*
Ga0114964_1048829313300010157Freshwater LakeLLQGVNIMHRYTYSPSQEALEKRRAAAMDLLAVLAYSISLTLLLLAWFDVLTF*
Ga0114964_1061764113300010157Freshwater LakeLTGEPTMHRYTYKPTQEALEKRRAAAMDVLAILAYAAGLTVCALAYFDILTF*
Ga0114960_1001125613300010158Freshwater LakeEALEKRRAAAMDILAVLAYSVALTVLALAYFDILTF*
Ga0114960_1015486233300010158Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDLLAVLAIAAALTLLGLAYFDILTF*
Ga0114960_1037043113300010158Freshwater LakeYKPTQEALEKRRAAAMDMLAVLAIAAALTVLALAYFDILTF*
Ga0114967_1017631353300010160Freshwater LakeMHHHYTYKPSQEALEKRRAAAMDMLAVLAIAAAFTLLGLAYFDILTF*
Ga0114967_1019064933300010160Freshwater LakeMKYTYSPSREAIEKRRAAAMDFLTVLAISGALTVLALAYFDILTF*
Ga0114967_1026709933300010160Freshwater LakeHHYTYKPSQEALEKRRAAAMDLLAVLAIAAALTLLGLAYFDILTF*
Ga0136235_100402643300010233FreshwaterMKYTYSPSQEALEKRRAAAMDFLAVLAYSAVLTVCALAYFDILTF*
Ga0133913_1023664363300010885Freshwater LakeMKYTYSPSREAIEKRRAAAMDFLAVLVIAAGLTLLGLAYFDILTF*
Ga0133913_1038139323300010885Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDMLAVLAIAAGLTLLGLAYFDILTF*
Ga0133913_1055752053300010885Freshwater LakeMHRYTYSPSQEALEKRRAAAMDILAVLAYSISLTLLLLAWFDVLTF*
Ga0133913_1064396743300010885Freshwater LakeMHHHYTYSPSREAIEKRRAAAMDLLTILAIAAGLTLLGLAYFDILTF*
Ga0133913_1119733423300010885Freshwater LakeMHRYTYKPTQEALEKRRQAAMDFFAVLVYAAALTALALAYFDILTF*
Ga0133913_1132826113300010885Freshwater LakeMHHHYTYKPSQEALEKRRAAAMDILAVLAIAAGLTLLGLA
Ga0133913_1133603613300010885Freshwater LakeKEALEKRRAAAMDMLAVLAYSVALTVLALAYFDILTF*
Ga0133913_1144748933300010885Freshwater LakeMHRYTYSPSQEALEKRRAAAMDMLAVLAYSVALTVLALAYFDILTF*
Ga0133913_1306569023300010885Freshwater LakeMHRYTYSPSQEALEKRRAAAMDMLAVLFIAAGLTLLGLAYFDILTF*
Ga0133913_1331380853300010885Freshwater LakeMHRYTYKPTQEALEKRRAAAMDMLAVLVYAAALTALALAYFDILTF*
Ga0133913_1351163143300010885Freshwater LakeMHRYTYSPSQEAIEKRRAAAMDMLAVLAYSVALTVLALAYFDILTF*
Ga0136642_100486043300013285FreshwaterMRHHYTYSPSQEALEKRRAAAMDMLAVLAYSVALTLLLLAWFDIITF*
Ga0136642_100750883300013285FreshwaterQEALEKRRAAAMDILAVLAYSVALTLLLLAYFDILTF*
Ga0136642_101142063300013285FreshwaterMRHHYTYSPSQEALEKRRAAAMDMLAVLACSIGLTLLLLAYFDILTF*
Ga0136642_103250243300013285FreshwaterMRHHYTYSPSQEALEKRRAAAMDILAVLAYSVALTLLLLAYFDILTF*
Ga0136642_105179253300013285FreshwaterRHHYTYSPSQEALEKRRAAAMDILAVLACSIGLTLLLLAYFDILTF*
Ga0136641_109587723300013286FreshwaterMKYTYSPSQEKMEKRRAAAMDFLAVLAYSAGLTLLGLAYFDILTF*
Ga0181338_100490353300015050Freshwater LakeMHRYTYKPTQEALERRRAAAMDFFAVLVYAAGLTLCALAYFDILTF*
Ga0214194_11005113300020686FreshwaterMHRYTYKPSQEALEKRRAAAMDMIAVLIYSVALTVCALAYFDILTF
Ga0214207_101082923300020716FreshwaterMHRYTYSPSQEQVERRRAAMMDFFAVLVYSAALTLLALDYFDILTF
Ga0208256_100786723300025382FreshwaterMHRYTYSPSQEQVERRRAAAMDMIAVLIYSVALTVCALAYFDILTF
Ga0208256_101063223300025382FreshwaterMHRYTYSPSQEQVERRRAAMMDFLAVLIYSAALTVCALAYFDILTF
Ga0207959_100057723300025387FreshwaterMHRYTYKPSQEALEKRRAAAMDMIAVLIYSVALTVCALDYFDILTF
Ga0207959_101043653300025387FreshwaterHRYTYSPSQEQVERRRAAAMDMIAVLIYSVALTVCALAYFDILTF
Ga0208248_103797943300025595FreshwaterMKYTYSPSREAIEKRRAAAMDFLTVLAIAGALTVLALAYFDILTF
Ga0208916_1018131513300025896AqueousMHRYTYKPTQEALEKRRQAAMDFFAVLIYAAGLTLCALAYFDILTF
Ga0209188_100461243300027708Freshwater LakeMHRYTYSPSQEALEKRRAAAMDLLAVLAYSIGLTLLLLAWFDVLTF
Ga0209188_1010778103300027708Freshwater LakeMHHHYTYKPSQEALEKRRAAAMDMLAVLAIAAGLTLLGLA
Ga0209188_102134053300027708Freshwater LakeMHRYTYSPSQEALEKRRAAAMDILAVLAYSVALTVLALAYFDILTF
Ga0209188_107063753300027708Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDLLAVLAIAAALTLLGLAYFDILTF
Ga0209499_1000293323300027712Freshwater LakeMHHHYTYKPSQEALEKRRAAAMDMLAVLAIAAGLTLLGLAYFDILTF
Ga0209499_105019743300027712Freshwater LakeMKYTYSPSQEALEKRRAAAMDLLAVLAIAAALTLLGLAYFDILTF
Ga0209499_114799133300027712Freshwater LakeMHRYTYSPSQEALEKRRAAAMDMLAVLAIAAALTLLALAYFDILTF
Ga0209297_126890023300027733Freshwater LakeMRHHYTYSPSQEALEKRRAAAMDLLAVLAIAGALTVLALAYFDILF
Ga0209085_1000205323300027741Freshwater LakeMKYTYSPSREAIEKRRAAAMDLLTVLAIAGALTVLALAYFDILTF
Ga0209085_100395783300027741Freshwater LakeMHRYTYKPTQEALEKRRAAAMDILAVLAYAAALTVCALAYFDILTF
Ga0209085_105351723300027741Freshwater LakeMHRYTYKPSQEALEKRRAAAMDFFAVLVYAAALTALALAYFDILTF
Ga0209085_105902543300027741Freshwater LakeMHRYTYSPSQEALEKRRAAAMDMLAVLAYSVALTVLALAYFDILTF
Ga0209597_1000272433300027746Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDLLAVLAIAAGLTLLGLAYFDILTF
Ga0209084_100614493300027749Freshwater LakeMHRYTYSPSQEALEKRRAAAMDLLAVLAYSISLTLLLLAWFDVLTF
Ga0209084_119756533300027749Freshwater LakeMKYTYSPSQEKMEKRRAAAMDFLAVLAYSAVLTVCALAYFDILTF
Ga0209596_110633143300027754Freshwater LakeMHHHYTYKPSQEALEKRRAAAMDILAVLAIAAGLTLLGLAYFDILTF
Ga0209088_1027600633300027763Freshwater LakeMRYTYSPSREAIEKRRAAAMDFLTVVAIAGALTVLALAYFDILTF
Ga0209134_1034529613300027764Freshwater LakeMHRYTYKPTQEALERRRAAAMDFFAVLVYAAGLTLCALAYFDILTF
Ga0209086_1015431923300027770Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDFLAVLAYSAVLTVCALAYFDILTF
Ga0209829_10003001143300027777Freshwater LakeMHRYTYSPSQEALEKRRAAAMDILAVLAYSISLTLLLLAWFDVLTF
Ga0209829_1027414233300027777Freshwater LakeMKYTYSPSQEALEKRRAAAMDMLAVLAIAAALTLLGLAYFDILTF
Ga0209829_1032883423300027777Freshwater LakeMHRYTYKPTQEALEKRRQAAMDFFAVLVYAAALTALALAYFDILTF
Ga0209246_1002634743300027785Freshwater LakeMHRYTYKPTQESLEKRRQAAMDFFAVLVYAAGLTLCALAYFDILTF
Ga0209354_1000805183300027808Freshwater LakeMHRYTYKPTQEALEKRRQAAMDFFAVLVYAAGLTLCALAYF
Ga0209777_1016077233300027896Freshwater Lake SedimentMHRYTYKPSQEALEKRRAAAMDMIAVLIYSAALTLLALDYFDILTF
Ga0209777_1019729713300027896Freshwater Lake SedimentPSQEQVERRRAAAMDMIAVLIYSVALTVCALAYFDILTF
Ga0209777_1025757113300027896Freshwater Lake SedimentSLNILAYKENIMHKYTYSPSQEQVERRRAAMMDFFAVLVYSAALTLLALDYFDILTF
Ga0209777_1099180123300027896Freshwater Lake SedimentMHKYTYSPSREQVERRRAAMMDFFAVLVYSAALTLLALDYFDILTF
Ga0209400_107575063300027963Freshwater LakeMHRYTYKPTQEALEKRRAAAMDMLAVLAYSVALTVCALAYFDILTF
Ga0209191_136588123300027969Freshwater LakeMHHHYTYSPSQEALEKRRAAAMDLLTVLAIAAGLTLLGLAYFDILTF
Ga0315274_1178226023300031999SedimentMHHHYTYKPSQEALEKRRAAAMDLLAVLAIAAALTLLGLAYFDILTF


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