NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F098896

Metagenome Family F098896

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098896
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 62 residues
Representative Sequence FKPDTCPHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAQDIVEASKKAMELETK
Number of Associated Samples 61
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 92.23 %
Associated GOLD sequencing projects 58
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (62.136 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(38.835 % of family members)
Environment Ontology (ENVO) Unclassified
(65.049 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(66.019 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 34.09%    β-sheet: 0.00%    Coil/Unstructured: 65.91%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF13481AAA_25 4.85
PF09250Prim-Pol 4.85
PF01844HNH 3.88
PF01541GIY-YIG 2.91
PF01242PTPS 2.91
PF15731MqsA_antitoxin 1.94
PF05014Nuc_deoxyrib_tr 0.97
PF10544T5orf172 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG07206-pyruvoyl-tetrahydropterin synthaseCoenzyme transport and metabolism [H] 2.91
COG3613Nucleoside 2-deoxyribosyltransferaseNucleotide transport and metabolism [F] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A62.14 %
All OrganismsrootAll Organisms37.86 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003497|JGI25925J51416_10029705All Organisms → Viruses → Predicted Viral1566Open in IMG/M
3300005584|Ga0049082_10334566Not Available502Open in IMG/M
3300005805|Ga0079957_1128504All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1326Open in IMG/M
3300006805|Ga0075464_10519913Not Available729Open in IMG/M
3300008267|Ga0114364_1140956Not Available682Open in IMG/M
3300009068|Ga0114973_10091351All Organisms → Viruses → Predicted Viral1738Open in IMG/M
3300009068|Ga0114973_10102689All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1623Open in IMG/M
3300009152|Ga0114980_10024275All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium3770Open in IMG/M
3300009160|Ga0114981_10140029All Organisms → cellular organisms → Bacteria1337Open in IMG/M
3300009161|Ga0114966_10191835All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium1300Open in IMG/M
3300009164|Ga0114975_10498518Not Available656Open in IMG/M
3300009180|Ga0114979_10250823Not Available1060Open in IMG/M
3300009529|Ga0114919_10980957Not Available569Open in IMG/M
3300010354|Ga0129333_10869860Not Available764Open in IMG/M
3300010370|Ga0129336_10218886Not Available1078Open in IMG/M
3300010370|Ga0129336_10252861Not Available990Open in IMG/M
3300010370|Ga0129336_10280340Not Available930Open in IMG/M
3300010370|Ga0129336_10409878Not Available739Open in IMG/M
3300010370|Ga0129336_10578832Not Available600Open in IMG/M
3300010370|Ga0129336_10726001Not Available525Open in IMG/M
3300010885|Ga0133913_10593975All Organisms → Viruses → Predicted Viral2907Open in IMG/M
3300013006|Ga0164294_10090118All Organisms → Viruses → Predicted Viral2290Open in IMG/M
(restricted) 3300013132|Ga0172372_10541437Not Available762Open in IMG/M
3300014050|Ga0119952_1037396All Organisms → cellular organisms → Bacteria1418Open in IMG/M
3300014050|Ga0119952_1074366All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium846Open in IMG/M
3300017701|Ga0181364_1040696Not Available741Open in IMG/M
3300017701|Ga0181364_1078539Not Available502Open in IMG/M
3300017707|Ga0181363_1005010All Organisms → cellular organisms → Bacteria2891Open in IMG/M
3300017722|Ga0181347_1085234Not Available916Open in IMG/M
3300017722|Ga0181347_1089922Not Available886Open in IMG/M
3300017747|Ga0181352_1051290Not Available1200Open in IMG/M
3300017761|Ga0181356_1031687All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium1892Open in IMG/M
3300017761|Ga0181356_1113537Not Available871Open in IMG/M
3300017761|Ga0181356_1165770Not Available675Open in IMG/M
3300017774|Ga0181358_1152915Not Available786Open in IMG/M
3300017780|Ga0181346_1044772All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium1804Open in IMG/M
3300017780|Ga0181346_1070544All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1389Open in IMG/M
3300017780|Ga0181346_1082324All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1267Open in IMG/M
3300017780|Ga0181346_1146025Not Available889Open in IMG/M
3300017780|Ga0181346_1158640Not Available841Open in IMG/M
3300017780|Ga0181346_1328222Not Available512Open in IMG/M
3300017784|Ga0181348_1135501Not Available934Open in IMG/M
3300017784|Ga0181348_1159801Not Available837Open in IMG/M
3300017784|Ga0181348_1230516Not Available649Open in IMG/M
3300017784|Ga0181348_1265640Not Available588Open in IMG/M
3300019784|Ga0181359_1056649All Organisms → cellular organisms → Bacteria1505Open in IMG/M
3300019784|Ga0181359_1062060Not Available1430Open in IMG/M
3300019784|Ga0181359_1086428All Organisms → Viruses → Predicted Viral1168Open in IMG/M
3300019784|Ga0181359_1099696All Organisms → Viruses → Predicted Viral1066Open in IMG/M
3300019784|Ga0181359_1172398All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300019784|Ga0181359_1213471Not Available612Open in IMG/M
3300019784|Ga0181359_1263562Not Available515Open in IMG/M
3300021961|Ga0222714_10131666All Organisms → Viruses → Predicted Viral1528Open in IMG/M
3300021962|Ga0222713_10746146Not Available553Open in IMG/M
3300021963|Ga0222712_10062746All Organisms → cellular organisms → Bacteria2717Open in IMG/M
3300022190|Ga0181354_1079522All Organisms → Viruses → Predicted Viral1082Open in IMG/M
3300022190|Ga0181354_1156075Not Available710Open in IMG/M
3300022190|Ga0181354_1157339Not Available706Open in IMG/M
3300022190|Ga0181354_1178031Not Available648Open in IMG/M
3300022190|Ga0181354_1214419Not Available566Open in IMG/M
3300022752|Ga0214917_10021461All Organisms → cellular organisms → Bacteria → PVC group5264Open in IMG/M
3300023174|Ga0214921_10242511All Organisms → Viruses → Predicted Viral1067Open in IMG/M
3300023174|Ga0214921_10442392Not Available644Open in IMG/M
3300023179|Ga0214923_10012278Not Available8463Open in IMG/M
3300023179|Ga0214923_10174654Not Available1303Open in IMG/M
3300023179|Ga0214923_10198650All Organisms → Viruses → Predicted Viral1185Open in IMG/M
3300027547|Ga0209864_1034319Not Available632Open in IMG/M
3300027746|Ga0209597_1060724All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium1830Open in IMG/M
3300027754|Ga0209596_1156780All Organisms → Viruses → Predicted Viral1008Open in IMG/M
3300027756|Ga0209444_10195559Not Available737Open in IMG/M
3300027756|Ga0209444_10206104Not Available710Open in IMG/M
3300027759|Ga0209296_1218601Not Available803Open in IMG/M
3300027770|Ga0209086_10134978All Organisms → Viruses → Predicted Viral1214Open in IMG/M
3300027770|Ga0209086_10373387Not Available582Open in IMG/M
3300027785|Ga0209246_10112379Not Available1069Open in IMG/M
3300027785|Ga0209246_10129669Not Available991Open in IMG/M
3300027798|Ga0209353_10371136Not Available593Open in IMG/M
3300027808|Ga0209354_10092062Not Available1236Open in IMG/M
3300027808|Ga0209354_10111529All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1116Open in IMG/M
3300027969|Ga0209191_1322741Not Available565Open in IMG/M
(restricted) 3300028557|Ga0247832_1082925Not Available1442Open in IMG/M
3300029933|Ga0119945_1013817Not Available1016Open in IMG/M
3300031566|Ga0307378_11199888Not Available601Open in IMG/M
3300031673|Ga0307377_10355551All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1097Open in IMG/M
3300031746|Ga0315293_10908699Not Available635Open in IMG/M
3300031772|Ga0315288_11503774Not Available556Open in IMG/M
3300031834|Ga0315290_11023944All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia694Open in IMG/M
3300031951|Ga0315904_10456012All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1141Open in IMG/M
3300031952|Ga0315294_10197935All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium2000Open in IMG/M
3300031952|Ga0315294_11067000Not Available667Open in IMG/M
3300032046|Ga0315289_10434636All Organisms → cellular organisms → Bacteria → Proteobacteria1289Open in IMG/M
3300032046|Ga0315289_10470808All Organisms → Viruses → Predicted Viral1220Open in IMG/M
3300032046|Ga0315289_10479135Not Available1204Open in IMG/M
3300032046|Ga0315289_11178009All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Samistivirus egole620Open in IMG/M
3300032050|Ga0315906_10308678Not Available1421Open in IMG/M
3300032053|Ga0315284_11068477All Organisms → cellular organisms → Bacteria → Proteobacteria901Open in IMG/M
3300032053|Ga0315284_11291162All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Samistivirus egole793Open in IMG/M
3300032053|Ga0315284_11312050Not Available784Open in IMG/M
3300032092|Ga0315905_10793349Not Available825Open in IMG/M
3300032156|Ga0315295_11248335Not Available726Open in IMG/M
3300032164|Ga0315283_12426326Not Available510Open in IMG/M
3300032177|Ga0315276_11711205Not Available649Open in IMG/M
3300034356|Ga0335048_0427265Not Available651Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake38.83%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment14.56%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake13.59%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater9.71%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient6.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater2.91%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.91%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.94%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.94%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.97%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton0.97%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.97%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic0.97%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.97%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.97%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand0.97%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003497Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DNEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009160Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaGEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300014050Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007BEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017707Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.NEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300027547Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14 (SPAdes)EnvironmentalOpen in IMG/M
3300027746Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027969Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028557 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_4mEnvironmentalOpen in IMG/M
3300029933Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031834Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032164Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0EnvironmentalOpen in IMG/M
3300032177Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0EnvironmentalOpen in IMG/M
3300034356Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI25925J51416_1002970513300003497Freshwater LakePKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVMEEVKESK*
Ga0049082_1033456613300005584Freshwater LenticFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVKLEEVKESK*
Ga0079957_112850413300005805LakePHAPCRPHAGLPQQKCKDATNKTPKTQMWCNALRNITAQDIVEAAKKAMELES*
Ga0075464_1051991313300006805AqueousAPCRPHAGLPQAKCKDASNKTPKTQMWCNALRNITAQDIVEASMKALELEDKQHEEKK*
Ga0114364_114095623300008267Freshwater, PlanktonVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVMELGDGK*
Ga0114973_1009135143300009068Freshwater LakeNVSVFEAAVCPHAPCRPHAGLPQAKCKDATNKTPKTQMWCNALRNIKAEDIVLASKKAIDLDFQQGETK*
Ga0114973_1010268943300009068Freshwater LakeAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAEDIVVASHKAMELEEK*
Ga0114980_1002427563300009152Freshwater LakePKNVSVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQMWCNALRNITAQDIVEASMKALELEDKSQETK*
Ga0114981_1014002933300009160Freshwater LakePEVCPHAPCRPHAGLPQAKCKDAINKTAKTQMWCNALRNITAEDIVVASKKAIELESK*
Ga0114966_1019183543300009161Freshwater LakePCRPHAGLPQAKCKDASNKTPKTQMWCNALRNIKAEDIVEASMKALELEDKQHEEKK*
Ga0114975_1049851813300009164Freshwater LakeYYPKNVSVFKPDTCPHAPCRPHAGLPQAKCKDASNRTPKTQYWCNALRNITAQDIVLASKKAMELESK*
Ga0114979_1025082333300009180Freshwater LakeFKPDTCPHAPCRPHAGLPQAKCKDASNRTPKTQYWCNALRNITAEDIVLASKKAMELESK
Ga0114919_1098095723300009529Deep SubsurfaceLYYPKSVPVFKPDTCPHAPCRPQAGLPQAKCKDATNRTKKTQMWCNALRNITPEDIVEAAKKVVEL*
Ga0129333_1086986013300010354Freshwater To Marine Saline GradientKPDTCPHAPCRPHAGLPQQKCKDASNKTPKTQMWCNALRNITAQDIVEAAKKAMELEG*
Ga0129336_1021888633300010370Freshwater To Marine Saline GradientSCPHAPCRPHADLPPGKCKDAPNKTKGTQYWCNALRNITAQDIVEAAAKAMELEEKSK*
Ga0129336_1025286123300010370Freshwater To Marine Saline GradientCPHAPCRPHAGLPQQKCKDATNKTAKTQMWCNALRNITAQDIVEAAKKAMELEG*
Ga0129336_1028034023300010370Freshwater To Marine Saline GradientPCRPHAGLPQQKCKDATNKTPKTQMWCNALRNITAQDIVEAAKKAMELEG*
Ga0129336_1040987813300010370Freshwater To Marine Saline GradientHAPCRPHAGLPQQKCKDASNKTPKTQMWCNALRNITAQDIVEAAKKAMELEG*
Ga0129336_1057883213300010370Freshwater To Marine Saline GradientKNISVFKPDTCPHAPCRPHAGLPQQKCKDATNKTPKTQMWCNALRNITAQDIVEAAKKAMELEEK*
Ga0129336_1072600113300010370Freshwater To Marine Saline GradientTCPHAPCRPHAGLPQQKCKDATNKTPKTQMWCNALRNITAQDIVEAAKKAMELEG*
Ga0133913_1059397513300010885Freshwater LakeVFKPDTCPHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAQDIVLASQKAIEL*
Ga0164294_1009011843300013006FreshwaterRPHAGLPQAKCKDASNRTPKTQYWCNALRNITAEDIVLASKKAIDLDFEQGETK*
(restricted) Ga0172372_1054143713300013132FreshwaterPHAPCHPQMGLPQAKCKDASNRTKGTQYYCNAIRAITAEMIVGKAKEAMEGQS*
Ga0119952_103739643300014050FreshwaterPCRPHAGLPQQKCKDATNKTPKTQMWCNALRNITAQDIVEAAKKAMELEGEIK*
Ga0119952_107436613300014050FreshwaterCPHAPCRPHAGLPQAKCKDASNKTKGTQYWCNALRHITAQDIVEASMKALELEDKSQETK
Ga0181364_104069613300017701Freshwater LakeFYPKSVPVFKPVTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVLASQKAIELGA
Ga0181364_107853923300017701Freshwater LakeKNVSVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQYWCNALRNITAEDIVVASRKAMELEEK
Ga0181363_100501013300017707Freshwater LakeVFKPDTCPHAPCRPHAGLPQQKCKDATNKTPKTQMWCNALRNITAQDIVEAAKKAMELEG
Ga0181347_108523443300017722Freshwater LakeCRPHAGLPQAKCKDASNKTPKTQYWCNALRNITAEDIVVASHKAMELEQQK
Ga0181347_108992233300017722Freshwater LakePKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVMDLEEK
Ga0181352_105129013300017747Freshwater LakeHAPCRPHAGLPQQKCKDATNKTPKTQMWCNALRNITAQDIVEAAKKAMELET
Ga0181356_103168713300017761Freshwater LakeMNAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAEDIVVASRKAMELEPK
Ga0181356_111353723300017761Freshwater LakeFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVKLEEV
Ga0181356_116577033300017761Freshwater LakeSFYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVMDLEEK
Ga0181358_115291533300017774Freshwater LakeVSFYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVELGA
Ga0181346_104477243300017780Freshwater LakeDTCPHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAEDIVVASRKAMELEPK
Ga0181346_107054413300017780Freshwater LakeDTCPHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAEDIVVASHKAMELDQQK
Ga0181346_108232413300017780Freshwater LakeRMTFYPKNVSVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQYWCNALRNITAEDIIVASKKAMELEPK
Ga0181346_114602513300017780Freshwater LakeDVCPHAPCRPHAGLLQAKCKDATNKTPKTQMWCNAMRNIKAEDIVLASKKAIDLENDK
Ga0181346_115864013300017780Freshwater LakePDTCPHAPCRPHAGLPQAKCKDASNKTPKTQYWCNALRNITAEDIVVASRKAMELEENK
Ga0181346_132822213300017780Freshwater LakeIFKPDTCPHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAEDIVVASHKAMELEE
Ga0181348_113550113300017784Freshwater LakeHAPCRPHAGLPQAKCKDASNKTPRTQYWCNALRNITAEDIVVASRKAMELEENK
Ga0181348_115980113300017784Freshwater LakeVSVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQYWCNALRNITAEDIVVASRKAMELDQQK
Ga0181348_123051623300017784Freshwater LakeCKYYPKSYPVFAPDVCPHAPCRPHGALPQAKCKDASNKTKGTQYWCNALRNITAEMIVENAKKAMQPGDVK
Ga0181348_126564013300017784Freshwater LakeEERPHGGLPQAKCKDATNKTPKTQYWCNALRNITAEDIVVASRKAMELEEK
Ga0181359_105664913300019784Freshwater LakeYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVKLEEVK
Ga0181359_106206013300019784Freshwater LakeCPHAPCRPHGSLPQAKCKDAKNRTSLTQYWCNAIRNISADDIVKASREVFKLENKTMQKV
Ga0181359_108642813300019784Freshwater LakeRCKYYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAQDIVEAAKKVVEEVKESK
Ga0181359_109969633300019784Freshwater LakeDYPKNVSVFKPDTCPHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAEDIVVASHKAMELDQQK
Ga0181359_117239823300019784Freshwater LakeVSFYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVMEEVKESK
Ga0181359_121347123300019784Freshwater LakeFKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQYWCNALRNITAEDIVVASRKAMELDQQ
Ga0181359_126356223300019784Freshwater LakeNKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVEEVKESK
Ga0222714_1013166613300021961Estuarine WaterFKPDTCPHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAQDIVEASKKAMELETK
Ga0222713_1074614613300021962Estuarine WaterVPVFKPDTCPHAPCRPHAGLPQAKCKDATNKTPKTQMWCNALRYITAQDIVEASMKALELEDNSHAKS
Ga0222712_1006274653300021963Estuarine WaterVFKPDTCPHAPCRPHAGLPQAKCKDATNKTPKTQYFCNALRNITAEDIVAASHKARELEDKQHEENK
Ga0181354_107952213300022190Freshwater LakeYYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVKLEEVKESK
Ga0181354_115607513300022190Freshwater LakeDPHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAQDIVLASQKAIELESK
Ga0181354_115733913300022190Freshwater LakeKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVEEIKESK
Ga0181354_117803113300022190Freshwater LakePDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVKLEEVKESK
Ga0181354_121441913300022190Freshwater LakeVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVKLEEVKESK
Ga0214917_1002146113300022752FreshwaterHAPCRPHAGLPQAKCKDASNKTPKTQMWCNALRHITAQDIVEASMKALELEDKSHATK
Ga0214921_1024251123300023174FreshwaterPHAPCRPHAGLPQAKCKDASNRTPKTQYWCNALRNITAQDIVLASQKAMELESK
Ga0214921_1044239213300023174FreshwaterPDTCPHAPCRPHAGLPQAKCKDAMNKTPKTQYWCNALRNITAEDIVEASKKAMELGA
Ga0214923_1001227813300023179FreshwaterYPKNVSVFKPDTCPHAPCRPHAGLPQAKCKDASNKTKGTQYWCNALRHITAQDIVEASMKALELEDKSHATK
Ga0214923_1017465443300023179FreshwaterVFKPDTCPHAPCRPHAGLPQQKCKDASNKTPKTQMWCNALRNITAQDIVEAAKKAMELES
Ga0214923_1019865013300023179FreshwaterKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQMWCNALRNITAQDIVEASMKALELEDKQHEEKK
Ga0209864_103431913300027547SandPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVELGEKQHEEKK
Ga0209597_106072443300027746Freshwater LakeYSKNVSIFKPDTCPHAPCRPHGGLPQAKCKDASNKTPRTQYWCNALRNITAEDIVVASHKAMELEEK
Ga0209596_115678013300027754Freshwater LakeKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQMWCNALRNIKAEDIVEASMKALELEDKQHEEKK
Ga0209444_1019555913300027756Freshwater LakePKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKRVVELGSNG
Ga0209444_1020610423300027756Freshwater LakeVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVELGEKK
Ga0209296_121860113300027759Freshwater LakeDTCPHAPCRPHAGLPQAKCKDASNKTPKTQMWCNALRNIKAQDIVEASMKALELEDKQHEERK
Ga0209086_1013497843300027770Freshwater LakeTYYPKNVSVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQMWCNALRNIKAEDIVEASMKALELEDKQHEEKK
Ga0209086_1037338713300027770Freshwater LakePDTCPHAPCRPHAGLPQAKCKDASNRTPKTQYWCNALRNITAEDIVLASKKAMELESK
Ga0209246_1011237913300027785Freshwater LakeVSFYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVLASQKAIELGA
Ga0209246_1012966913300027785Freshwater LakeHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAEDIVVASRKAMELGA
Ga0209353_1037113613300027798Freshwater LakeVSFYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVMDLEEK
Ga0209354_1009206233300027808Freshwater LakeTCPHAPCRPHAGLPQAKCKDASNRTPLTQYWCNALRNITAQDIVEASKKAMELGSNG
Ga0209354_1011152913300027808Freshwater LakeSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVKLEEVKESK
Ga0209191_132274133300027969Freshwater LakeVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQMWCNALRNIKAQDIVEASMKALELEDKQHEERK
(restricted) Ga0247832_108292533300028557FreshwaterSVPIFKPDTCPHAPCRPQGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVT
Ga0119945_101381713300029933AquaticNVSVFKPDTCPHAPCRPHGGLPQQKCKDASNKLPKTQYWCNALRNITAQDIVEAAAKAMELENDGQERK
Ga0307378_1119988813300031566SoilRVLYYPKSVPVFKPDTCPHAPCRPQAGLPQAKCKDATNRTKKTQMWCNALRNITPEDIVEAAKKVVEL
Ga0307377_1035555113300031673SoilCPHAPCRPQAGLPQAKCKDATNRTKKTQMWCNALRNIAAEDIVEAAKKVVTL
Ga0315293_1090869923300031746SedimentPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVELGEKQHEEKK
Ga0315288_1150377413300031772SedimentYYPKNVSVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPRTQYWCNALRNITAEDIVVASHKAMELEEKPQGSYRM
Ga0315290_1102394433300031834SedimentFKPDTCPHAPCRPHAGLPQAKCKDATNKTPKTQYWCNALRNITAEDIVVASHKAMELEEKPQGSYRM
Ga0315904_1045601213300031951FreshwaterNISVFKPDTCPHAPCRPHAGLPQQKCKDATNKTPKTQMWCNALRNITAQDIVEAAKKAMELEG
Ga0315294_1019793553300031952SedimentSVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPRTQYWCNALRNITAEDIVVASRKAMELEEK
Ga0315294_1106700013300031952SedimentPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVELGEKQHEEKK
Ga0315289_1043463633300032046SedimentKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVEEVKEN
Ga0315289_1047080843300032046SedimentPHAPCRPHAGLPQAKCKDASNKTPRTHYWCNALRNITAEDIVVASRKAMELEEK
Ga0315289_1047913533300032046SedimentKFYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVMEEVKESK
Ga0315289_1117800923300032046SedimentVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQYWCNALRNITAEDIVVASRKAMELEE
Ga0315906_1030867813300032050FreshwaterYPKNVSVFKPDTCPHAPCRPHAGLPQAKCKDATNKTKGTQYWCNALRNITAQDIVEAAKKAMELEG
Ga0315284_1106847713300032053SedimentPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITVEDIVEAAKKVVEEVKESK
Ga0315284_1129116223300032053SedimentTCPHAPCRPHAGLPQAKCKDASNKTPKTQYWCNALRNITAEDIVVASRKAMELEEK
Ga0315284_1131205013300032053SedimentVSFYPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVVASRKAMELEENK
Ga0315905_1079334933300032092FreshwaterCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVMELGEKK
Ga0315295_1124833513300032156SedimentVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIVEAAKKVVEEVK
Ga0315283_1242632623300032164SedimentYPENVSVFKPDTCPHAPCRPHAGLPQAKCKDASNKTPKTQYWCNALRNITAEDIVVASHKAMELEEK
Ga0315276_1171120513300032177SedimentPKSVPVFKPDTCPHAPCRPHGGLPQAKCKDATNRTKKTQMWCNALRNITAEDIIEAAKKVVELGEKQHEEKK
Ga0335048_0427265_2_1813300034356FreshwaterFKPDTCPHAPCRPHAGLPQQKCKDATNKTPKTQMWCNALRNITAQDIVEAAKKAMELEG


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