Metagenome / Metatranscriptome Family F098844

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098844
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	45 residues
Representative Sequence	AYWQKLLGALTSQAEEVRALSTKVAAAAGEPLKEQVKRGVDELRKAN
Number of Associated Samples	87
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.83 %
% of genes near scaffold ends (potentially truncated)	93.20 %
% of genes from short scaffolds (< 2000 bps)	97.09 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.757 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.388 % of family members)
Environment Ontology (ENVO)	Unclassified (30.097 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.718 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00571	CBS	21.36
PF09361	Phasin_2	9.71
PF00313	CSD	1.94
PF03330	DPBB_1	0.97
PF01327	Pep_deformylase	0.97
PF11752	DUF3309	0.97
PF03734	YkuD	0.97
PF01950	FBPase_3	0.97
PF00903	Glyoxalase	0.97
PF12244	DUF3606	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.97
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1980	Archaeal fructose 1,6-bisphosphatase	Carbohydrate transport and metabolism [G]	0.97
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.76 %
Unclassified	root	N/A	25.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.76 %
Unclassified	root	N/A	25.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.76 %
Unclassified	root	N/A	25.24 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.28 %
Unclassified	root	N/A	25.24 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.34 %
Unclassified	root	N/A	25.24 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	52.43 %
Unclassified	root	N/A	25.24 %
Kordiimonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales	0.97 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	50.49 %
Unclassified	root	N/A	25.24 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.97 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.97 %
Kordiimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	50.49 %
Unclassified	root	N/A	25.24 %
Kordiimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas	0.97 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	50.49 %
Unclassified	root	N/A	25.24 %
Kordiimonas lacus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas → Kordiimonas lacus	0.97 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320005\|FACEOR_FY84VJD01CRRH6	Not Available	500	Open in IMG/M
3300000559\|F14TC_100315371	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300000567\|JGI12270J11330_10013151	All Organisms → cellular organisms → Bacteria → Proteobacteria	5397	Open in IMG/M
3300002155\|JGI24033J26618_1069588	Not Available	527	Open in IMG/M
3300003287\|Ga0006882J48912_107788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	613	Open in IMG/M
3300003990\|Ga0055455_10054727	Not Available	1101	Open in IMG/M
3300005338\|Ga0068868_102065676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	542	Open in IMG/M
3300005367\|Ga0070667_101562956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	620	Open in IMG/M
3300005435\|Ga0070714_100589453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1067	Open in IMG/M
3300005539\|Ga0068853_100285408	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300005539\|Ga0068853_100587991	Not Available	1056	Open in IMG/M
3300005842\|Ga0068858_101825401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	601	Open in IMG/M
3300006058\|Ga0075432_10596699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	504	Open in IMG/M
3300006845\|Ga0075421_101870860	Not Available	643	Open in IMG/M
3300006881\|Ga0068865_101317180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	643	Open in IMG/M
3300007076\|Ga0075435_100262231	All Organisms → cellular organisms → Bacteria → Proteobacteria	1472	Open in IMG/M
3300007076\|Ga0075435_101017651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	723	Open in IMG/M
3300009011\|Ga0105251_10614279	Not Available	517	Open in IMG/M
3300009146\|Ga0105091_10254789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas → Kordiimonas lacus	847	Open in IMG/M
3300009147\|Ga0114129_11520063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	822	Open in IMG/M
3300009147\|Ga0114129_11699046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	770	Open in IMG/M
3300009147\|Ga0114129_12753513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	585	Open in IMG/M
3300009156\|Ga0111538_12975718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	592	Open in IMG/M
3300009168\|Ga0105104_10618725	Not Available	617	Open in IMG/M
3300009520\|Ga0116214_1241171	Not Available	685	Open in IMG/M
3300009521\|Ga0116222_1005346	All Organisms → cellular organisms → Bacteria	6332	Open in IMG/M
3300009524\|Ga0116225_1446820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	574	Open in IMG/M
3300009545\|Ga0105237_10973106	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300009545\|Ga0105237_12706611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	507	Open in IMG/M
3300009553\|Ga0105249_11854312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	676	Open in IMG/M
3300009553\|Ga0105249_11879332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	671	Open in IMG/M
3300009678\|Ga0105252_10433556	Not Available	604	Open in IMG/M
3300009817\|Ga0105062_1068692	Not Available	669	Open in IMG/M
3300010375\|Ga0105239_13236515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	530	Open in IMG/M
3300010396\|Ga0134126_11765381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	678	Open in IMG/M
3300010396\|Ga0134126_12278770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	590	Open in IMG/M
3300010400\|Ga0134122_10382577	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300011119\|Ga0105246_10473052	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300012473\|Ga0157340_1016317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	586	Open in IMG/M
3300012902\|Ga0157291_10202052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	630	Open in IMG/M
3300012902\|Ga0157291_10395348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	510	Open in IMG/M
3300012914\|Ga0157297_10172306	Not Available	725	Open in IMG/M
3300012915\|Ga0157302_10046266	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300012958\|Ga0164299_10439341	Not Available	850	Open in IMG/M
3300012961\|Ga0164302_10059966	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300012961\|Ga0164302_10939275	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300012986\|Ga0164304_10179157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1364	Open in IMG/M
3300013296\|Ga0157374_12748600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	520	Open in IMG/M
3300013308\|Ga0157375_12772439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	586	Open in IMG/M
3300014326\|Ga0157380_10970425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	881	Open in IMG/M
3300014968\|Ga0157379_11552816	Not Available	645	Open in IMG/M
3300014969\|Ga0157376_10225935	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
3300015077\|Ga0173483_10106558	Not Available	1177	Open in IMG/M
3300015371\|Ga0132258_11348885	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300015372\|Ga0132256_100693443	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300015372\|Ga0132256_102668300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	599	Open in IMG/M
3300015374\|Ga0132255_101201279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1142	Open in IMG/M
3300017792\|Ga0163161_11293819	Not Available	634	Open in IMG/M
3300018001\|Ga0187815_10266739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	725	Open in IMG/M
3300018007\|Ga0187805_10544728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	546	Open in IMG/M
3300018007\|Ga0187805_10650304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	500	Open in IMG/M
3300018017\|Ga0187872_10291782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	716	Open in IMG/M
3300018078\|Ga0184612_10254351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	907	Open in IMG/M
3300019356\|Ga0173481_10402415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	670	Open in IMG/M
3300021855\|Ga0213854_1381286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	540	Open in IMG/M
3300025898\|Ga0207692_10707982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	654	Open in IMG/M
3300025899\|Ga0207642_10058180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1782	Open in IMG/M
3300025903\|Ga0207680_10968665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	609	Open in IMG/M
3300025915\|Ga0207693_11309660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	542	Open in IMG/M
3300025945\|Ga0207679_11871114	Not Available	548	Open in IMG/M
3300025960\|Ga0207651_11579292	Not Available	591	Open in IMG/M
3300025981\|Ga0207640_12052910	Not Available	518	Open in IMG/M
3300026053\|Ga0208422_1023994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	725	Open in IMG/M
3300026118\|Ga0207675_100912807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	895	Open in IMG/M
3300026118\|Ga0207675_101378618	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300027568\|Ga0208042_1057279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	995	Open in IMG/M
3300027625\|Ga0208044_1009643	Not Available	3773	Open in IMG/M
3300027641\|Ga0208827_1062612	Not Available	1203	Open in IMG/M
3300027873\|Ga0209814_10482736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	548	Open in IMG/M
3300028597\|Ga0247820_10504492	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300030988\|Ga0308183_1096660	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300030990\|Ga0308178_1034042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	885	Open in IMG/M
3300031081\|Ga0308185_1033274	Not Available	629	Open in IMG/M
3300031124\|Ga0308151_1011791	Not Available	817	Open in IMG/M
3300031125\|Ga0308182_1002990	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300031125\|Ga0308182_1014500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	632	Open in IMG/M
3300031331\|Ga0307432_1048973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1350	Open in IMG/M
3300031505\|Ga0308150_1031244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	597	Open in IMG/M
3300031720\|Ga0307469_12128886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	546	Open in IMG/M
3300031847\|Ga0310907_10170575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1017	Open in IMG/M
3300031854\|Ga0310904_11362258	Not Available	515	Open in IMG/M
3300031965\|Ga0326597_11868032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	561	Open in IMG/M
3300031965\|Ga0326597_11949167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	545	Open in IMG/M
3300032013\|Ga0310906_10896462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	632	Open in IMG/M
3300032075\|Ga0310890_10733051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	777	Open in IMG/M
3300032180\|Ga0307471_101302783	Not Available	889	Open in IMG/M
3300032515\|Ga0348332_13177043	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300032515\|Ga0348332_14705482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	576	Open in IMG/M
3300032515\|Ga0348332_14706215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1280	Open in IMG/M
3300033521\|Ga0316616_102110306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	749	Open in IMG/M
3300033551\|Ga0247830_10673387	Not Available	821	Open in IMG/M
3300034644\|Ga0370548_010181	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300034681\|Ga0370546_084867	Not Available	534	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.19%
Host-Associated	Host-Associated	39.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.51%
Plants	Host-Associated → Plants	39.81%
Aquatic	Environmental → Aquatic	10.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.59%
Freshwater	Environmental → Aquatic → Freshwater	6.80%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.91%
Marine	Environmental → Aquatic → Marine	1.94%
Sediment	Environmental → Aquatic → Sediment	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.88%
Loam	Environmental → Terrestrial → Soil → Loam	3.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.97%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.97%
Sand	Environmental → Terrestrial → Soil → Sand	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.97%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.97%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.94%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.97%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.97%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.97%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.97%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.97%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320005	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2-	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300003287	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 83 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026053	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031081	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031125	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031331	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-150	Environmental	Open in IMG/M
3300031505	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_139 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORA_5913380	2032320005	Soil	WQKMLNTMTCQAEEVRALMTKVAVTTGEPVTEQVRRGVDELRKAT
F14TC_1003153715	3300000559	Soil	AYWQKLLSTLTSQAEEVRALATKMAAAASQPLKEQVKQGVDELRKAN*
JGI12270J11330_100131511	3300000567	Peatlands Soil	TSQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKAN*
JGI24033J26618_10695882	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	TSQAEEVRALSTKVAAAAGERSAHVKRGMDELRKVT*
Ga0006882J48912_1077881	3300003287	Peatlands Soil	QKLCGNLTSQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKAN*
Ga0055455_100547271	3300003990	Natural And Restored Wetlands	LQVAYWQKLWGTFSSQAEEVRAVVTKVAAAVGEPLKEQVKRSVDDLRKAT*
Ga0068868_1020656762	3300005338	Miscanthus Rhizosphere	WQKQLGALTSQAEEVRALSTKVAAAAGEPLKEQVKRGMDELRKAN*
Ga0070667_1015629561	3300005367	Switchgrass Rhizosphere	MELQGAYWRKQLGALAAQAEEVRALSTKMAAAASEPPKEQVKRGAEELHKAN*
Ga0070714_1005894531	3300005435	Agricultural Soil	WQKLLNTLTSQAEELRALATKMAAAASQPLKEQVKRGVDELGKVN*
Ga0068853_1002854085	3300005539	Corn Rhizosphere	ALTSQAEEVRALSTKVAAAAGEPLKAHVKRGMDELRKVT*
Ga0068853_1005879911	3300005539	Corn Rhizosphere	QKLLGTLTSQAEEVRALATKMAAAAIEPVKQQVKRGVDELGKVN*
Ga0068858_1018254012	3300005842	Switchgrass Rhizosphere	LQGAYWRKQFGALAAQAEEVRALSTEMAAPASEPLKEQVKRGAEELHKANWLASA*
Ga0075432_105966991	3300006058	Populus Rhizosphere	WQKQLGALTSQAEEVRALSTKVAAAAGEPLKEQMKRGMGELRKAN*
Ga0075421_1018708601	3300006845	Populus Rhizosphere	HAAHWQKQLGALTSQAEEVRALSTKVAAAAGEPLKAHVKRGMDELRKVT*
Ga0068865_1013171801	3300006881	Miscanthus Rhizosphere	TSQAEEVRALSTKMAAAAGEPLKQQMKRGVDDLRKSN*
Ga0075435_1002622311	3300007076	Populus Rhizosphere	YWQKLLGTLTSQAEEVRALATKMAAAAIEPVKQQVKRGVDELGKVN*
Ga0075435_1010176511	3300007076	Populus Rhizosphere	TSQAEEVRALSTKVAAAAGEPLKEQMKRGMGELRKAN*
Ga0105251_106142792	3300009011	Switchgrass Rhizosphere	YWRKLFATLPSQAEELRTLLTKVVADAGQPLKEQVKRGVDKLGKVH*
Ga0105091_102547891	3300009146	Freshwater Sediment	HWQNQIGALTAQAEEVSALSNKVAPAAGAPLEEQVKRGVETLAGGA*
Ga0114129_115200633	3300009147	Populus Rhizosphere	LGALTSQAEEVRALSTKVAAAAGEPLKAQAKRSMDELRKAT*
Ga0114129_116990461	3300009147	Populus Rhizosphere	WQKQLGALTSQAEEVRALSTKVAAAAGEPLKAHVKRGMDELRKVT*
Ga0114129_127535132	3300009147	Populus Rhizosphere	DYWQKLLGALTSQAEEVRALSTKMAAAAGEPLKEQMKRRVDDLRKSN*
Ga0111538_129757182	3300009156	Populus Rhizosphere	LWGTLTSQADEVRALSAKVAAAAGEPLKEQVKRGVDGLRKAN*
Ga0105104_106187252	3300009168	Freshwater Sediment	LPSQAEEVHALANKMAAAASQPLKEQVKQGVDKLGKVI*
Ga0116214_12411712	3300009520	Peatlands Soil	VDFEPGPVWQKLCGNLTSQAEEVRALSTKMAAAAGEPLKEQVK
Ga0116222_100534613	3300009521	Peatlands Soil	VDFEPGPVWQKLCGNLTSQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKAN*
Ga0116225_14468201	3300009524	Peatlands Soil	SQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKAN*
Ga0105237_109731061	3300009545	Corn Rhizosphere	LTSQAEEVRALSAKVAAAAGEPLKEQLKRGVNELHKAN*
Ga0105237_127066111	3300009545	Corn Rhizosphere	ALTSQAEEVRALSAKVAAAAGEPLKEQLKRGVNELHKAN*
Ga0105249_118543123	3300009553	Switchgrass Rhizosphere	QAEEVRALSTKMAAAAGEPLKEQMKRRVDDLRKSN*
Ga0105249_118793322	3300009553	Switchgrass Rhizosphere	QAEEVRALSAKVAAAAGEPLKQQMKRGVDDLRKSN*
Ga0105252_104335562	3300009678	Soil	YWQKLCGNLTSQAEEVRALSSKVTAAAGEQVKRGVDELRKAK*
Ga0105062_10686923	3300009817	Groundwater Sand	AYWQKLLGALTSQAEEVRALSTKVAAAAGEPLKEQVKRGVDELRKAN*
Ga0105239_132365151	3300010375	Corn Rhizosphere	QAEEVRALSTEMAAAASEPLKEQVKRGAEELHKAN*
Ga0134126_117653813	3300010396	Terrestrial Soil	AAYWQKLLGALTSQAEEVRALSTKMAAAAGEPLKEQMKRRVDDLRKSN*
Ga0134126_122787701	3300010396	Terrestrial Soil	AEEVRALSTKMAAAASEPPKEQVKRGAEELHKANWLASA*
Ga0134122_103825771	3300010400	Terrestrial Soil	KLLGTLTSQAEEVRALATKMAAAAIEPVKQQVKRGVDELGKVN*
Ga0105246_104730524	3300011119	Miscanthus Rhizosphere	QAAYWQKLLGTLVSQAEEVRALSTKVATAAGEPLKEQVKRGVDELHQSN*
Ga0157340_10163172	3300012473	Arabidopsis Rhizosphere	LTSQAEEVRALSTKMAAAAVEPLKEQVKRGVDELRKAN*
Ga0157291_102020522	3300012902	Soil	WQKQLGALTSQAEEVRALSTKVAAAAGEPLKAHVKRGMG*
Ga0157291_103953482	3300012902	Soil	LQAAHWQKQLGALTSQAEEVRALSTKVAAAAGEPLKAQAKRSMDELRKVT*
Ga0157297_101723062	3300012914	Soil	WPKLLGTLTSQVEEVRALATKMAAAAIEPVKQQVKRGVDELGKVN*
Ga0157302_100462661	3300012915	Soil	KQLGALTSQAEEVRALSTKVAAAAGEPLKAHVKRGMDELRKVT*
Ga0164299_104393413	3300012958	Soil	QAEEVRALSTKMAAAAVEPLKEQVKRGVDKLGKVH*
Ga0164302_100599661	3300012961	Soil	KMLNTLTSQAEEVRALMKKVAVTTAEPVTEQVKRGVEQLRKAT*
Ga0164302_109392751	3300012961	Soil	LQAAYWQKLLGALTSQAEEVRALSTKMAAAAVEPLKEQVKRGVNELRKAN*
Ga0164304_101791571	3300012986	Soil	GAYWRKQLGALAAQAEEVRALSTKMAAAASEPPKEQVKRGAEELHKAN*
Ga0157374_127486002	3300013296	Miscanthus Rhizosphere	ELQGAYWRKQFGALAAQAEEVRALSTEMAAPASEPLKEQVKRGAEELHKAN*
Ga0157375_127724392	3300013308	Miscanthus Rhizosphere	AAHWQKQLGALTSQAEEVRALSTKVAAAAGEPLKEQVKRGMDELRKAN*
Ga0157380_109704251	3300014326	Switchgrass Rhizosphere	RKLFATLPSQAEELRTLLTKVVADAGQPLKEQVKRGVDVLRKAN*
Ga0157379_115528162	3300014968	Switchgrass Rhizosphere	VELQADYWQKLLGALTSQAEEVRALSTKMAAAAGEPLKQQMKRGVDDLRKSN*
Ga0157376_102259354	3300014969	Miscanthus Rhizosphere	LGALTSQAEEVRALSTKVAAAAGEPLKEQVKRGMDELRKAN*
Ga0173483_101065583	3300015077	Soil	YWQKLCGNLTSQAEEVRTLSSKVTAAAGEQVKRGVDELRKAK*
Ga0132258_113488851	3300015371	Arabidopsis Rhizosphere	VELQAAHWQKQLGALTSQAEEVRALSTKVAAAAGEPLKEQVKRSVKAT*
Ga0132256_1006934431	3300015372	Arabidopsis Rhizosphere	IEELQAAYWQELLGALTSQAEEVRALSTKMAAAAVEPLKEQVKRGVDELRKAN*
Ga0132256_1026683001	3300015372	Arabidopsis Rhizosphere	AAHWQKQLGALTSQAEEVCALSTKVAAAAGEPLKEQVKRGMDELRKAN*
Ga0132255_1012012793	3300015374	Arabidopsis Rhizosphere	DLYDRVKLQAAYWRKQFGVMTAQAEEVRALSVEVTAAAAAPLKAQVQRGVDELREAN*
Ga0163161_112938192	3300017792	Switchgrass Rhizosphere	LGALTSQAEEVRALSTKMAAAAVEPLKEQVKRGVDKLGKVH
Ga0187815_102667392	3300018001	Freshwater Sediment	AAYWQKLLGALTSQAEEVRALSTKMAAAAGEPLKEQVKRGVDQLRKAN
Ga0187805_105447282	3300018007	Freshwater Sediment	ELQAAYWQKLLGALTSQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKAN
Ga0187805_106503041	3300018007	Freshwater Sediment	LGALTSQAEEVRALSTKMATVAGEPLKEQVKRGVDQLRKAN
Ga0187872_102917822	3300018017	Peatland	KSQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKAN
Ga0184612_102543512	3300018078	Groundwater Sediment	MVELQAAYWQKLLGALTSQGEEVRALSAKVAVAAGEPLKEQVKRGVDDLRKAN
Ga0173481_104024152	3300019356	Soil	LSTLTSQAEEVRALATKVAAAAGEPFKEQVNRVAELRKAN
Ga0213854_13812861	3300021855	Watersheds	ELQAAYWQKLLGTLKSQAEEVRTLSTKLAAAAGEPLKEQVKRGVDTLRKAN
Ga0207692_107079821	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	HWQKQLGALTSQAEEVRALSTKVAAAAGEPLKEQVKRGMDELRKAN
Ga0207642_100581805	3300025899	Miscanthus Rhizosphere	GALTSQAEEVRALSTKVAAAAGEPLKEQVKRGMDELRKAN
Ga0207680_109686652	3300025903	Switchgrass Rhizosphere	IVELQAAHWQKQLGALTSQAEEVRALSTKVAAAAGEPLKAHVNAAWMSCAR
Ga0207693_113096601	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	QKQLGALTSQAEEIHALSTKVAAAAGEPLKEQVKRGMDELRKAT
Ga0207679_118711141	3300025945	Corn Rhizosphere	LQLQGEYWQKLCGNLTSQAEEVRALSSKVTAAAGEQVKRGVDELRKAK
Ga0207651_115792922	3300025960	Switchgrass Rhizosphere	QAEEVRALATKMAAAAIEPVKQQVKRGVDELGKVN
Ga0207640_120529102	3300025981	Corn Rhizosphere	QVEEVRALATKMAAAAIEPVKQQVKRGVDELGKVN
Ga0208422_10239943	3300026053	Natural And Restored Wetlands	PKPLRVRALSTKMAAAAGEPLKEQVKRSVDELRKAN
Ga0207675_1009128071	3300026118	Switchgrass Rhizosphere	KLLGALTSQAEEVRALSAKVAAAAGEPLKEQVKRGVDEPRKAN
Ga0207675_1013786182	3300026118	Switchgrass Rhizosphere	TSQAEEVRALSAKVAAAAGEPLKEQLKRGVNELHKAN
Ga0208042_10572793	3300027568	Peatlands Soil	CGNLTSQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKAN
Ga0208044_10096434	3300027625	Peatlands Soil	VDFEPGPVWQKLCGNLTSQAEEVRALSTKMAAAAGEPLKEQVKRGVDEPRKAN
Ga0208827_10626123	3300027641	Peatlands Soil	VDFEPGPVWQKLCGNLTSQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKAN
Ga0209814_104827361	3300027873	Populus Rhizosphere	YWQKLLGALTSQAEEVRALSTKMAAAAGEPLKQQMKRGVDDLRKSN
Ga0247820_105044922	3300028597	Soil	AYWQKLLGTLVSQAEEVRALSTKVATAAGEPLKEQVKRGMDELRKAN
Ga0308183_10966601	3300030988	Soil	ALTSQAEEVRALSAKVAAAAGEPLKEQLKRGVNELHKAN
Ga0308178_10340423	3300030990	Soil	VELQAAYWQKLLGALTSQAEEVRALSAKLAAAAGEPLKEQVKRGVDELRKAN
Ga0308185_10332741	3300031081	Soil	GAKNLPEILQLQGAYWQKLCGNLTSQAEEVRALSSKVTAAAGEQVKRGVDELRKVK
Ga0308151_10117912	3300031124	Soil	VELQAAYWQKLLGALTSQAEEVRALSAKVAAAAGEPLKEQVKRGVDELRKAN
Ga0308182_10029903	3300031125	Soil	LGALTSQAEEVRALSTKMAAAAVEPLKEQVKRGVNELRKAN
Ga0308182_10145001	3300031125	Soil	QGAYWRKQFGALAAQAEEVRALSTKMAAAASEPLKEQVKRGVNEPRKAN
Ga0307432_10489732	3300031331	Salt Marsh	MVELQAAYWQKLLGTLTSQVEEVRAFSTKMAAAAGEPLKEQVKRGVDELRKAN
Ga0308150_10312441	3300031505	Soil	TSQAEEVRALSAKVAVAAGEPLKEQVKRGVDDLRKAN
Ga0307469_121288861	3300031720	Hardwood Forest Soil	QWGTLTSQAEEVRALATKMAAAASQPLKEQMKQGVDALRKAN
Ga0310907_101705752	3300031847	Soil	AYWQKLLGTLVSQAEEVRALSTKVATAAGEPLKEQMKRGVDDLRKLN
Ga0310904_113622581	3300031854	Soil	AVYWQKLLGALTSQAEEVRALSAKVAAAAGEPLKEQLKRGVNELHKAN
Ga0326597_118680322	3300031965	Soil	YWQKLLGTLTSQAEEVRAVATKVAATAGEPLKEQVKRSVDELRKAN
Ga0326597_119491671	3300031965	Soil	LQAAYWQKLLGTLTSQAEEVRALSTKVAAAAGEPLKEQVQRGVDELRKAN
Ga0310906_108964623	3300032013	Soil	WQKQLGALTSQAEEVRALSTKVAAAAGEPLKAHVKRGMDELRKVT
Ga0310890_107330511	3300032075	Soil	WQKLLGALTSQAEEVRALSAKVAAAAGEPLKEQVKRGVDELRKAN
Ga0307471_1013027831	3300032180	Hardwood Forest Soil	TSQAEEVRALSTKMAAAAGEPLKEQVKRGVEELRKAN
Ga0348332_131770431	3300032515	Plant Litter	EMVELQAAYWQKLLGALKSQAEEVRALSTKMAAAAGEPLKEHMAGGADGLGTTH
Ga0348332_147054821	3300032515	Plant Litter	QKLLGALKSQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKAN
Ga0348332_147062154	3300032515	Plant Litter	QKLLGALKSQAEEVRALSTKMAAAAGEPLKEQVKRGVDELRKTS
Ga0316616_1021103061	3300033521	Soil	DYWQKLLGALTSQAEEVRALSTKMAAAAGEPLKQQMKRGVDDLRKSN
Ga0247830_106733873	3300033551	Soil	AYWQQLCGNLTSQAEEVRALSNKVTADAGEQVKRGVDELRKAK
Ga0370548_010181_1112_1264	3300034644	Soil	LQAVYWQKLLGALTSQAEEVRALSAKVAAAAGEPLKEQVKRGVNELRKAN
Ga0370546_084867_407_532	3300034681	Soil	LGALTSQAEEIRAISTKVAAAAGEPLKEQVKRGVDELGKVH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098844

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences