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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F098817 |
| Family Type | Metagenome |
| Number of Sequences | 103 |
| Average Sequence Length | 56 residues |
| Representative Sequence | AKVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN |
| Number of Associated Samples | 90 |
| Number of Associated Scaffolds | 103 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 4.85 % |
| % of genes from short scaffolds (< 2000 bps) | 5.83 % |
| Associated GOLD sequencing projects | 84 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.41 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (94.175 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (9.709 % of family members) |
| Environment Ontology (ENVO) | Unclassified (34.951 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (50.485 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
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| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 12.50% β-sheet: 31.25% Coil/Unstructured: 56.25% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.41 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 103 Family Scaffolds |
|---|---|---|
| PF00005 | ABC_tran | 85.44 |
| PF02445 | NadA | 0.97 |
| PF00487 | FA_desaturase | 0.97 |
| PF05635 | 23S_rRNA_IVP | 0.97 |
| PF01078 | Mg_chelatase | 0.97 |
| PF00111 | Fer2 | 0.97 |
| PF12698 | ABC2_membrane_3 | 0.97 |
| PF00437 | T2SSE | 0.97 |
| PF00561 | Abhydrolase_1 | 0.97 |
| COG ID | Name | Functional Category | % Frequency in 103 Family Scaffolds |
|---|---|---|---|
| COG0379 | Quinolinate synthase | Coenzyme transport and metabolism [H] | 0.97 |
| COG1398 | Fatty-acid desaturase | Lipid transport and metabolism [I] | 0.97 |
| COG3239 | Fatty acid desaturase | Lipid transport and metabolism [I] | 0.97 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 94.17 % |
| All Organisms | root | All Organisms | 5.83 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005347|Ga0070668_101091214 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 720 | Open in IMG/M |
| 3300005436|Ga0070713_101637476 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 625 | Open in IMG/M |
| 3300018052|Ga0184638_1120589 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 958 | Open in IMG/M |
| 3300021073|Ga0210378_10396830 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 512 | Open in IMG/M |
| 3300025972|Ga0207668_11720587 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 566 | Open in IMG/M |
| 3300031720|Ga0307469_11185844 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 721 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 9.71% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 6.80% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 6.80% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 5.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 4.85% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.85% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 4.85% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 4.85% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 3.88% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 2.91% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 2.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.91% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 2.91% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 2.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.91% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 2.91% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 2.91% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.94% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.94% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 1.94% |
| Groundwater Sand | Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand | 1.94% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 1.94% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.94% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.94% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 0.97% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.97% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.97% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.97% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 0.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.97% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 0.97% |
| Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 0.97% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.97% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.97% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.97% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300003371 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM | Host-Associated | Open in IMG/M |
| 3300004013 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 | Environmental | Open in IMG/M |
| 3300005180 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 | Environmental | Open in IMG/M |
| 3300005206 | Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2 | Environmental | Open in IMG/M |
| 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Environmental | Open in IMG/M |
| 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
| 3300005542 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 | Environmental | Open in IMG/M |
| 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Environmental | Open in IMG/M |
| 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Host-Associated | Open in IMG/M |
| 3300006032 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 | Environmental | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006894 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control | Environmental | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) | Host-Associated | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300009814 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 | Environmental | Open in IMG/M |
| 3300010029 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20 | Environmental | Open in IMG/M |
| 3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
| 3300010159 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 | Environmental | Open in IMG/M |
| 3300010358 | Tropical forest soil microbial communities from Panama - MetaG Plot_3 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300012204 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG | Environmental | Open in IMG/M |
| 3300012209 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG | Environmental | Open in IMG/M |
| 3300012210 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012354 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012358 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
| 3300012987 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG | Environmental | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300013832 | Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M | Environmental | Open in IMG/M |
| 3300014320 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1 | Environmental | Open in IMG/M |
| 3300015162 | Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface) | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300017947 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG | Environmental | Open in IMG/M |
| 3300018032 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG | Environmental | Open in IMG/M |
| 3300018052 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2 | Environmental | Open in IMG/M |
| 3300018060 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG | Environmental | Open in IMG/M |
| 3300018070 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1 | Environmental | Open in IMG/M |
| 3300018075 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1 | Environmental | Open in IMG/M |
| 3300021073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo | Environmental | Open in IMG/M |
| 3300021413 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1 | Environmental | Open in IMG/M |
| 3300025567 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes) | Environmental | Open in IMG/M |
| 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026542 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes) | Environmental | Open in IMG/M |
| 3300027395 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027462 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027882 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300030336 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1 | Environmental | Open in IMG/M |
| 3300031543 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031799 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21 | Environmental | Open in IMG/M |
| 3300031805 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23 | Environmental | Open in IMG/M |
| 3300031860 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
| 3300033416 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C | Environmental | Open in IMG/M |
| 3300033433 | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN | Environmental | Open in IMG/M |
| 3300034090 | Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N | Environmental | Open in IMG/M |
| 3300034178 | Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI26145J50221_10064162 | 3300003371 | Arabidopsis Thaliana Rhizosphere | DARVRARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAAEGLPIVSGQTFVVEAGAN* |
| Ga0055465_101272982 | 3300004013 | Natural And Restored Wetlands | PQARPNAPFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVNATVVSGQTFVVSAGRETPRV* |
| Ga0066685_107184641 | 3300005180 | Soil | ARARARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAH* |
| Ga0068995_101074742 | 3300005206 | Natural And Restored Wetlands | VSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNAGIVSGQTFVVEAAGGPPKA* |
| Ga0070670_1013689242 | 3300005331 | Switchgrass Rhizosphere | RFQAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLQPVNANVVSGQTFVVSAGSETPRA* |
| Ga0070661_1001064403 | 3300005344 | Corn Rhizosphere | VSIKPRAEYASRKNWGLQSRDLLTFSVRLQPINAPVVSGQTFVVEVGGQG* |
| Ga0070668_1009744361 | 3300005347 | Switchgrass Rhizosphere | KIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG* |
| Ga0070668_1010912142 | 3300005347 | Switchgrass Rhizosphere | AFTLGKTVEIWPQARPDARARAKVVSIRPRSEFATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0070668_1020345962 | 3300005347 | Switchgrass Rhizosphere | GKTVEIWPQARPGTHSRARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLVPEGLAVVSGQTFVVEAGAN* |
| Ga0070667_1013919701 | 3300005367 | Switchgrass Rhizosphere | ARAKVVSIRPRSEFATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0070713_1016374762 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | KTVRVWPQARASGQSFPARVLSIKPRSEFATRRNWGMQSRDLKTFSVRLKPEGAPVVSGQTFVVEAGS* |
| Ga0070701_101634542 | 3300005438 | Corn, Switchgrass And Miscanthus Rhizosphere | PRSEFATRKNWGLQSRDLQTFSVRLQPLNATVVSGQTFVVEAGSEPPKA* |
| Ga0070663_1003969102 | 3300005455 | Corn Rhizosphere | RSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0068867_1016503911 | 3300005459 | Miscanthus Rhizosphere | VVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0068853_1018112822 | 3300005539 | Corn Rhizosphere | AKVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0070732_107837602 | 3300005542 | Surface Soil | PAKVLSIKPRSEFATRRNWGLQSRDLKTFSVRLKPEGAPVVSGQTFVVEAGS* |
| Ga0070704_1022252212 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | SIKPRAEYASRKNWGLQSRDLLTFSVRLQPINASVVSGQTFVVEVGGQG* |
| Ga0068852_1019209641 | 3300005616 | Corn Rhizosphere | FATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0066696_109120781 | 3300006032 | Soil | ARIVSIKPRSEFATRKNWGLHSRDLLTFSVRLQPLQAPVIAGQTFVVEAGSGPGV* |
| Ga0075425_1025849071 | 3300006854 | Populus Rhizosphere | ARPEGAFFARVVSVKPRSEFATRKNWGIQSRDLKTFSVRLAPLATTVISGQTFVVEAIKT |
| Ga0075425_1030133611 | 3300006854 | Populus Rhizosphere | DASFFARITSIKPRSEFATRRNWGLQSRDLKTFSVRLVPEGEGVVAGQTFVVEAGKR* |
| Ga0079215_101248751 | 3300006894 | Agricultural Soil | RPRSEFATRRNWGMQSRDLRTFSVRLAPEGLPIVSGQTFVVEAGS* |
| Ga0075424_1004837461 | 3300006904 | Populus Rhizosphere | KSVEVWPQARPDAKTRARIVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGSAVVSGQTFVVEAGAN* |
| Ga0097620_1020375242 | 3300006931 | Switchgrass Rhizosphere | PNARFQAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLLPVNATVVSGQTFVVSAGSETPRA* |
| Ga0114129_124318481 | 3300009147 | Populus Rhizosphere | RFQAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLLPVNATVVSGQTFVVSAGSETPRA* |
| Ga0105243_110612201 | 3300009148 | Miscanthus Rhizosphere | VSIKPRSEFANRRNWGVQSRDLQTFSVRLLPVNATVVSGQTFVVSAGSETPRA* |
| Ga0075423_115151111 | 3300009162 | Populus Rhizosphere | KVVSIRPRSEFATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0105082_11103581 | 3300009814 | Groundwater Sand | FATRRNWGLQSRDLKTFSVRLAPQGASVIAGQTFVVEAGKS* |
| Ga0105074_10480031 | 3300010029 | Groundwater Sand | AKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVAATVVSGQTFVVEAGTETPRA* |
| Ga0126384_116238101 | 3300010046 | Tropical Forest Soil | PRSEFATRKNWGLQSRDLKTFSVRLVPQGTTIISGQTFVVEAGRSQS* |
| Ga0126384_119837902 | 3300010046 | Tropical Forest Soil | RAEFATRKNWGLQSRDLKTFSVRLAPQNTSVISGQTFVVEAGRS* |
| Ga0099796_103345821 | 3300010159 | Vadose Zone Soil | AARVVSVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAAVISGQTFVVEAGRN* |
| Ga0126370_103696291 | 3300010358 | Tropical Forest Soil | KVVTVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNTSVISGQTFVVEAGRS* |
| Ga0126379_121148792 | 3300010366 | Tropical Forest Soil | KPRAEFATRKNWGLQSRDLKTFSVRLAPQNIAVISGQTFVVEAGRN* |
| Ga0134128_132126422 | 3300010373 | Terrestrial Soil | RSEFATRRNWGLNDRDLKTFSVRLAPQGTSVVSGQTFVVEAGKS* |
| Ga0126383_114217731 | 3300010398 | Tropical Forest Soil | SIKPRSEFATRKNWGIQSRDLQTFSVRLQPLDASVVAGQTFVVEAGGAHPKA* |
| Ga0134121_106631891 | 3300010401 | Terrestrial Soil | KPRAEFATRKNWGLHSRDLKTFSVRLSPQNSGVISGQTFVVEAGRN* |
| Ga0137374_110352271 | 3300012204 | Vadose Zone Soil | AARVVTIKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAGVISGQTFVVEAGRN* |
| Ga0137374_111032762 | 3300012204 | Vadose Zone Soil | RFAARVVTIKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAGVISGQTFVVEAGRN* |
| Ga0137379_102492623 | 3300012209 | Vadose Zone Soil | FARVTSIKPRSEFATRRNWGLQSRDLKTFSVRLVPEGEGVVAGQTFVVEAGKH* |
| Ga0137379_107754452 | 3300012209 | Vadose Zone Soil | VTIKPRAEFATRKNWGLQSCDLKTFSVRLAPQNAGVISGQTFVVEAGRN* |
| Ga0137378_106822551 | 3300012210 | Vadose Zone Soil | IRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0137366_110785092 | 3300012354 | Vadose Zone Soil | TVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNTAVVSGQTFVIEAGRLKD* |
| Ga0137366_111334871 | 3300012354 | Vadose Zone Soil | ARFAARVVTVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNTSVISGQTFVVEAGRN* |
| Ga0137368_101966523 | 3300012358 | Vadose Zone Soil | SIRPRSEFATRRNWGLQSRDLRTFSVRLVPEGLPVVSGQTFVVEAGTN* |
| Ga0164300_109323681 | 3300012951 | Soil | IVSIKPRSEFATRKNWGLQSRDLLTFSVRLQPLNESVVSGQTFVVEVGRQG* |
| Ga0164302_108640702 | 3300012961 | Soil | FATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0164308_104440851 | 3300012985 | Soil | NSRFQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG* |
| Ga0164307_108997182 | 3300012987 | Soil | DARIAARVVSVKPRAEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG* |
| Ga0163162_114083662 | 3300013306 | Switchgrass Rhizosphere | FQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG* |
| Ga0120132_11496211 | 3300013832 | Permafrost | VRVWPQARVGESFPARVISIKPRSEFATRRNWGMQSRDLKTFSVRLKPEGVPLVSGQTFVVEAGS* |
| Ga0075342_12426232 | 3300014320 | Natural And Restored Wetlands | RFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVDATVVSGQTFVVEAGSETPRA* |
| Ga0167653_10223361 | 3300015162 | Glacier Forefield Soil | VVSVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNSAVISGQTFVVEAGRN* |
| Ga0132258_128716262 | 3300015371 | Arabidopsis Rhizosphere | RPDARARAKVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN* |
| Ga0132256_1012347342 | 3300015372 | Arabidopsis Rhizosphere | RSEFATRRNWGLQSRDLKTFSVRLAPQGAAVIAGQTFVVEAGKS* |
| Ga0132255_1046961492 | 3300015374 | Arabidopsis Rhizosphere | RSEFATRKNWGLQSRDLQTFSVRLQPLKEGAVVSGQTFVVETGSGPPKA* |
| Ga0132255_1047354791 | 3300015374 | Arabidopsis Rhizosphere | QARGGSPFPARVISIKPRSEFATRRNWGLQSRDLKTFSVRLKPEGGAAVPGQTFVVEAGS |
| Ga0187785_106348101 | 3300017947 | Tropical Peatland | PDAPFSARIMSIKPRSEYATRRNWGLQSRDLKTFSVRLQPIDVKVVSGQTFVVEAGKS |
| Ga0187788_101660331 | 3300018032 | Tropical Peatland | PDARFQARVVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNGSVVSGQAFVVEAGSGPPKA |
| Ga0184638_11205891 | 3300018052 | Groundwater Sediment | MPAQVPGKKVEIWPQARPDTRATARVVSIRPRSEFATRRNWGMQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGS |
| Ga0187765_106774491 | 3300018060 | Tropical Peatland | TRFQAKIVSIKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGSVVSGQTFVVEAGSGPPGA |
| Ga0184631_102752831 | 3300018070 | Groundwater Sediment | RSEFATRRNWGLQSRDLRTFSVRLVPEGLPVVSGQTFVVEAGAN |
| Ga0184632_102007161 | 3300018075 | Groundwater Sediment | QARPDVRAHARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGA |
| Ga0210378_103968302 | 3300021073 | Groundwater Sediment | VGKSVEIWPQARPDARARARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLVPEGLPVVAGQTFVVEAGAN |
| Ga0193750_10482421 | 3300021413 | Soil | WPQARPDASFFARVTSIKPRSEFATRRNWGLQSRDLKTFSVRLVPEAEGVVAGQTFVVEAGKP |
| Ga0210076_10660281 | 3300025567 | Natural And Restored Wetlands | PQARPNAPFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVNATVVSGQTFVVSAGRETPRV |
| Ga0207647_107179231 | 3300025904 | Corn Rhizosphere | SVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAAVISGQTFVVEAGRN |
| Ga0207654_107759201 | 3300025911 | Corn Rhizosphere | VTVWPQARPDSRFQARVVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNATVVSGQTFVVEAGSEPPKA |
| Ga0207646_101728143 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | QGKRVRVWPQARPEAPFFARIVSVKPRSEFATRKNWGLQSRDLKTFSVRLAPEGQGVVSGQTFVVEAGKT |
| Ga0207646_108618252 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | RVRVWPQARPDASFFARVTSIKPRSEFATRRNWGLQSRDLKTFSVRLVPEGEGVVAGQTFVVEAGKH |
| Ga0207706_113268871 | 3300025933 | Corn Rhizosphere | NSRFQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG |
| Ga0207709_105507421 | 3300025935 | Miscanthus Rhizosphere | QAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLLPVNATVVSGQTFVVSAGSETPRA |
| Ga0207665_104526252 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | RGGSPFPARVLSIKPRKEFATRRNFGLQSRDLKTFSVRLKPEGGGVAVAGQTFVVEAGS |
| Ga0207665_110392802 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | ARIVSIKPRSEFATRKNWGLQSRDLLTFSVRLQPLNESVVSGQTFVVEVGRQG |
| Ga0207668_117205872 | 3300025972 | Switchgrass Rhizosphere | AFTLGKTVEIWPQARPDARARAKVVSIRPRSEFATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN |
| Ga0207640_104163603 | 3300025981 | Corn Rhizosphere | ARAKVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN |
| Ga0207658_100320331 | 3300025986 | Switchgrass Rhizosphere | PNSRFQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG |
| Ga0207703_100790234 | 3300026035 | Switchgrass Rhizosphere | RTVMVWPQARPDARFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNATVVSGQTFVVEAGSEPPKA |
| Ga0207648_110796561 | 3300026089 | Miscanthus Rhizosphere | RPRSEFATRRNWGLQSRDLRTFSVRLVPEGLAVVSGQTFVVEAGAN |
| Ga0209805_13196542 | 3300026542 | Soil | VEIWPQARPDARARARVISIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVETGAH |
| Ga0209996_10243851 | 3300027395 | Arabidopsis Thaliana Rhizosphere | RPDARVRARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAAEGLPIVSGQTFVVEAGAN |
| Ga0210000_10286512 | 3300027462 | Arabidopsis Thaliana Rhizosphere | RVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAAEGLPIVSGQTFVVEAGAN |
| Ga0209590_105536861 | 3300027882 | Vadose Zone Soil | SEFATRRNWGLQSRDLRTFSVRLQPVDVKVVSGQTFVIEAGKS |
| Ga0268265_105933132 | 3300028380 | Switchgrass Rhizosphere | PQARPNARFQAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLQPVNANVVSGQTFVVSAGSETPRA |
| Ga0247826_102168181 | 3300030336 | Soil | VWPQARPNSRFQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG |
| Ga0318516_108594381 | 3300031543 | Soil | VSVWAQARPDAPFSARIISIKPRSEYATRRNWGLQSRDLKTFSVRLQPIDVKVVSGQTFVVEAGKS |
| Ga0318555_107667711 | 3300031640 | Soil | IKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGSVVSGQTFVVEAGTGPPGA |
| Ga0307469_109821201 | 3300031720 | Hardwood Forest Soil | DTRFQAKIVSIKPRSEYATRKNWGLQSRDLQTFSVRLQPLNETVVSGQTFVVEAGSGPPG |
| Ga0307469_111858441 | 3300031720 | Hardwood Forest Soil | AFPVGQLVRAWPQARPDAPFSVRIISIKPRAEFATRKNWGLQSRDLKTFSVRLAPQGTRVISGQTFVVEAGKS |
| Ga0318565_106455742 | 3300031799 | Soil | APFSARIISIKPRSEYATRRNWGLQSRDLKTFSVRLQPIDVKVVSGQTFVVEAGKS |
| Ga0318497_102692472 | 3300031805 | Soil | VWAQARPDAPFSARIISIKPRSEYATRRNWGLQSRDLKTFSVRLQPIDVKVVSGQTFVVEAGKS |
| Ga0318495_103395792 | 3300031860 | Soil | TRFQAKVVSIKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGSVVSGQTFVVEAGSGPPGA |
| Ga0306923_118661292 | 3300031910 | Soil | TRFQAKIVSIKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGSVVSGQTFVVEAGTGPPGA |
| Ga0306922_104271293 | 3300032001 | Soil | VVWPQARPDTRFEAKIVSIKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGTVVSGQTFVVEAGSGSPGA |
| Ga0307471_1008256072 | 3300032180 | Hardwood Forest Soil | PQARPQDRFPARIVSVKPRSEFATRRNWGLQSRDLKTFSVRLAPQGATVIAGQTFVVEAGKS |
| Ga0307471_1038080821 | 3300032180 | Hardwood Forest Soil | DAPFSARVISIKPRAEFATRKNWGLQSRDLKTFSVRLSPQGVRVISGQTFVVEAGSTPPTNTSTNTPTRTSTP |
| Ga0307471_1041718122 | 3300032180 | Hardwood Forest Soil | SVKPRSEFATRRNWGLQSRDLRTFSVRLQPVDVKVVSGQTFVVEAGKS |
| Ga0307472_1010042361 | 3300032205 | Hardwood Forest Soil | VKPRSEFATRRNWGLQSRDLRTFSVRLQPVETKVVAGQTFIVEAGKT |
| Ga0335084_100432641 | 3300033004 | Soil | PRSEFATRRNWGLQSRDLKTFSVRLAPQGARVIAGQTFVVEAGKS |
| Ga0316622_1023667292 | 3300033416 | Soil | PNARFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVNATVVSGQTFVVQAGSETPRA |
| Ga0326726_115198872 | 3300033433 | Peat Soil | VGGSVTVWPQARPDARFAARVVTIKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAGIVSGQTFVVEAGRN |
| Ga0326723_0552352_391_531 | 3300034090 | Peat Soil | KPRAEFATRKNWGLQSRDLKTFSVRLAPQNAGVVSGQTFVVEAGRN |
| Ga0364934_0076324_16_180 | 3300034178 | Sediment | VVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNATVVSGQTFVVEAGSEPRRA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |