NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098705

Metagenome / Metatranscriptome Family F098705

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098705
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 45 residues
Representative Sequence MQTVLGLLELAFYVVSILTLSAAVTYAVVKISPAKSAKRQPDKA
Number of Associated Samples 69
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 5.83 %
% of genes near scaffold ends (potentially truncated) 16.50 %
% of genes from short scaffolds (< 2000 bps) 83.50 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (70.874 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment
(36.893 % of family members)
Environment Ontology (ENVO) Unclassified
(42.718 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(40.777 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.
1LWAnN_09234460
2A_all_C_00821320
3JGIcombinedJ13530_1089487852
4Ga0055436_102172292
5Ga0055486_100500282
6Ga0055486_100823542
7Ga0063454_1014727502
8Ga0062383_103465041
9Ga0062383_104438782
10Ga0062380_100484551
11Ga0062380_100929811
12Ga0062379_101300061
13Ga0062382_101684721
14Ga0068996_101663411
15Ga0074472_113421512
16Ga0073922_10562401
17Ga0075028_1005348762
18Ga0075017_1005620402
19Ga0105044_101644212
20Ga0102851_133959592
21Ga0117941_10070353
22Ga0105094_108330472
23Ga0130016_106125201
24Ga0150985_1069009822
25Ga0157216_101650762
26Ga0153916_100298802
27Ga0164308_116083812
28Ga0075303_10995922
29Ga0075340_10505732
30Ga0075356_10197722
31Ga0167630_10019663
32Ga0167665_10246772
33Ga0167665_10862872
34Ga0167667_10011406
35Ga0167667_10027906
36Ga0167629_11864272
37Ga0163144_100192212
38Ga0190271_113023133
39Ga0163153_100087122
40Ga0163150_104430491
41Ga0207665_104682912
42Ga0209261_100461672
43Ga0209464_101274271
44Ga0209797_102425482
45Ga0209683_102505322
46Ga0209683_102512792
47Ga0209798_101665971
48Ga0209798_103393902
49Ga0209798_104369521
50Ga0209591_102235652
51Ga0209023_106157122
52Ga0209254_100912922
53Ga0209048_100269982
54Ga0210366_100701252
55Ga0302263_103890392
56Ga0311332_109358132
57Ga0311333_101575561
58Ga0311333_108433921
59Ga0311349_111811001
60Ga0311349_115666852
61Ga0307497_104065412
62Ga0315290_100162307
63Ga0315290_100252686
64Ga0315290_100787063
65Ga0315290_101586422
66Ga0315290_102030532
67Ga0315290_102239822
68Ga0315290_105695102
69Ga0315290_105815792
70Ga0315290_106830362
71Ga0315280_101800112
72Ga0315297_103177502
73Ga0315297_106314872
74Ga0315297_116420951
75Ga0302322_1015554572
76Ga0311367_101773813
77Ga0315278_100396012
78Ga0315278_108437292
79Ga0315278_112492071
80Ga0315272_102653392
81Ga0315272_103521752
82Ga0315272_105811112
83Ga0315292_101544852
84Ga0315292_103114092
85Ga0315292_116583662
86Ga0315281_100463017
87Ga0315283_103938672
88Ga0315283_120618452
89Ga0315283_122907572
90Ga0315268_110735652
91Ga0315268_118938932
92Ga0315276_121833691
93Ga0315271_109424292
94Ga0315271_111271911
95Ga0315270_101379671
96Ga0315270_102893462
97Ga0315270_103222671
98Ga0315270_109950082
99Ga0315287_111708792
100Ga0315273_111089232
101Ga0315273_123959532
102Ga0316605_110599832
103Ga0370498_115562_498_632
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 41.67%    β-sheet: 0.00%    Coil/Unstructured: 58.33%
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Variant

510152025303540MQTVLGLLELAFYVVSILTLSAAVTYAVVKISPAKSAKRQPDKAExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreSignal PeptideTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
70.9%29.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Freshwater And Sediment
Freshwater Lake Sediment
Freshwater Sediment
Freshwater Microbial Mat
Sediment
Wetland Sediment
Freshwater Wetlands
Freshwater Wetlands
Freshwater
Estuarine
Natural And Restored Wetlands
Wetland
Sediment (Intertidal)
Watersheds
Lake Sediment
Soil
Glacier Forefield Soil
Soil
Soil
Untreated Peat Soil
Natural And Restored Wetlands
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Sand
Fen
Avena Fatua Rhizosphere
Wastewater
2.9%36.9%13.6%3.9%2.9%6.8%2.9%7.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LWAnN_092344602088090009Freshwater SedimentMQTVLGLFELTFYVVSILTLSAAVTYAVVKISPAKSAKRQTDKT
A_all_C_008213202140918007SoilMKTVLGLFELAFYVVSILSLSAAVTFAVVKISPVKPAKRQADKA
JGIcombinedJ13530_10894878523300001213WetlandMDTILGLLELVLYVCTILALSAAVTYAVVRISPSQSAKQSSGKS*
Ga0055436_1021722923300004024Natural And Restored WetlandsMQTIFGLAELAFYVCSILGLSAAVTYAVVRISPSQSAKQSADKA*
Ga0055486_1005002823300004071Natural And Restored WetlandsMRTVLGLIELVFYVCSILALSAAVTYLVVKISPMKTAKPQPDKG*
Ga0055486_1008235423300004071Natural And Restored WetlandsMTTVLGLIELALYVVSILTLSAAITYAVVKISPAKSAKRQPEKS*
Ga0063454_10147275023300004081SoilMPVVYAWMQTVLGLFELLFYVVSILALSAGVTYAVVRISPAKSSKPKPEEA*
Ga0062383_1034650413300004778Wetland SedimentMQTVLGLLELAFYVVSILTLSAAVTYAVVKISPAKSAKRQPDKA*
Ga0062383_1044387823300004778Wetland SedimentMETVLGLIELALYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT*
Ga0062380_1004845513300004779Wetland SedimentMDTALGLVELALYVVVILTLSAAVTYVVVRISPAKPAKRQADKS*
Ga0062380_1009298113300004779Wetland SedimentPMDTILGLVELVFYVCCILALSAAVTYAVVRISPSQAAKQSTDKS*
Ga0062379_1013000613300004781Wetland SedimentMDTILGLVELVFYVCCILALSAAVTYAVVRISPSQAAKQSTDKS*
Ga0062382_1016847213300004782Wetland SedimentMSSILGLVELAVYVCSILALSSAVTYAVVRISPSQSAKQSPEKT*
Ga0068996_1016634113300005218Natural And Restored WetlandsMDTILGLLELTFYVCSILALSAAVTYAVVRISPSQSAKRSAGKS*
Ga0074472_1134215123300005833Sediment (Intertidal)MKTVLGLIELAFYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT*
Ga0073922_105624013300005955SandMRTVLGLLELVFYVCSILALSAGVTYLVVKISPLKTAKPKPD
Ga0075028_10053487623300006050WatershedsMETVLGLLALALYVAGILALSAAITYAVVKISPAKPAKRAPDKA*
Ga0075017_10056204023300006059WatershedsMHTVFGLLELAFYVVAILALSATVTFLVVKVSPSSSKKPKAEKA*
Ga0105044_1016442123300007521FreshwaterMRTVFGLLELVFYVCSILALSAGVTYLVVRISPMKPAKRQPDKT*
Ga0102851_1339595923300009091Freshwater WetlandsMETVLGLIELALYVVGILTLSAAVTYAVVRISPAKSAKRQPDKG*
Ga0117941_100703533300009120Lake SedimentMDTILGLLELVLYVCSILALSAAVTYAVVRISPSQSAKQSAGKD*
Ga0105094_1083304723300009153Freshwater SedimentMDTILGLLELTLYVCSILALSVAAASSKIRITPSQSAKQSAGKD*
Ga0130016_1061252013300009868WastewaterMDTILGLLELALYVCSILALSAAVTFAVVKISPSQSAKQPIGKS*
Ga0150985_10690098223300012212Avena Fatua RhizosphereMPVVYARMQTVLGLFELLFYVVSILALSAGVTYAVVRISPAKSSKPKPEEA*
Ga0157216_1016507623300012668Glacier Forefield SoilMRTVLGLLELLVYVLTILALSAAVTFLVVKISPAKSKKGSAVTDKN*
Ga0153916_1002988023300012964Freshwater WetlandsMDTILGLVELAFYVCCILGLSAAVTYAVVRISPSQSAKQSADKT*
Ga0164308_1160838123300012985SoilMPVVYARMRTALGLLELAFYVGAILLLSAGVTYVVVKISPTKTDKQQPDKA*
Ga0075303_109959223300014299Natural And Restored WetlandsMRTVLGLIELVFYVCSILALSAGVTYLVVRVSPLKSAKSQPDKG*
Ga0075340_105057323300014304Natural And Restored WetlandsMDTALGLLELALYVVSILALSAGMTFAVVKISPAQSAKKRKQADSA*
Ga0075356_101977223300014323Natural And Restored WetlandsMRTVLGLVELVFYVCSILALSAGVTYLVVKISPMKPAKRQPDKT*
Ga0167630_100196633300015159Glacier Forefield SoilMKTVLGLVELALYVASILTLSAAVTFAVVRISPAKSAQPADKT*
Ga0167665_102467723300015163Glacier Forefield SoilMRTVLGLIELAFYVISILTLSAAVTWAVVKISPTKTAKRQPDKA*
Ga0167665_108628723300015163Glacier Forefield SoilMRTVLGLIELVFYVVSILALSAAVTFAVVRISPTKSAKQTDKA*
Ga0167667_100114063300015189Glacier Forefield SoilMRTVLGLLELVFYVCAILALSAGVTYLVVRISPMKTAKPKPDKG*
Ga0167667_100279063300015189Glacier Forefield SoilMRTVLGLLELTFYVCAILALSAGVTYLVVKISPLKTAKPKPDKT*
Ga0167629_118642723300015209Glacier Forefield SoilHQMKTVLGLVELALYVASILTLSAAVTFAVVRISPAKSAQPADKT*
Ga0163144_1001922123300015360Freshwater Microbial MatMRTVLGLLELVFYVCAILALSAGVTYLVVRISPMKTAKRQPDKT*
Ga0190271_1130231333300018481SoilMRTVLGLIELVFYVCSILALSAGVTYLVVKVSPMKTAKSQPDKS
Ga0163153_1000871223300020186Freshwater Microbial MatMRTVLGLLELVFYVCAILALSAGVTYLVVRISPMKTAKRQPDKT
Ga0163150_1044304913300020195Freshwater Microbial MatSTHEMRTVLGLLELVFYVCAILALSAGVTYLVVRISPMKTAKRQPDKT
Ga0207665_1046829123300025939Corn, Switchgrass And Miscanthus RhizosphereMPVVYARMRTALGLLELAFYVGAILLLSAGVTYVVVKISPTKTDKPQPDKA
Ga0209261_1004616723300027735Wetland SedimentMDTILGLVELVFYVCCILALSAAVTYAVVRISPSQAAKQSTDKS
Ga0209464_1012742713300027778Wetland SedimentMDTILGLVELVFYVCCILALSAAVTYAVVRISPSQAAKQS
Ga0209797_1024254823300027831Wetland SedimentILGLVELAVYVCSILALSSAVTYAVVRISPSQSAKQSPEKT
Ga0209683_1025053223300027840Wetland SedimentMSSILGLVELAVYVCSILALSSAVTYAVVRISPSQSAKQSPEKT
Ga0209683_1025127923300027840Wetland SedimentMETVLGLIELALYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT
Ga0209798_1016659713300027843Wetland SedimentMKTVLGLIELAFYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT
Ga0209798_1033939023300027843Wetland SedimentMQTVLGLLELAFYVVSILTLSAAVTYAVVKISPAKSAKRQPDKA
Ga0209798_1043695213300027843Wetland SedimentHRMETVLGLIELALYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT
Ga0209591_1022356523300027850FreshwaterMRTVFGLLELVFYVCSILALSAGVTYLVVRISPMKPAKRQPDKT
Ga0209023_1061571223300027870Freshwater And SedimentMRTVLGLLELVFYVCSILALSAGVTYLVVKISPMKSAKRQPDKT
Ga0209254_1009129223300027897Freshwater Lake SedimentMETVLGLIELALYVVGILALSAAITYAVVRISPAKSAKRQPDKT
Ga0209048_1002699823300027902Freshwater Lake SedimentMDTVFGLLELAFYVVAILALSAAVTFLVVRVSPSSSKKPKAEKA
Ga0210366_1007012523300028420EstuarineVDTILGLVELAAYVLAILALSAATTLAVIKISPAQSAKKPKQSDSS
Ga0302263_1038903923300028869FenMDTVLGLIELAFYVVSILVLSATITYLVVKFSPSNSKKRKAEKA
Ga0311332_1093581323300029984FenMQTVLGLLELTFYVLAILGLSAGVTFAVVKISPTKTAKPQSDKS
Ga0311333_1015755613300030114FenMDTVLGLIELAFYVVSILVLSATITYLVVKISPSNSKKAKAEKA
Ga0311333_1084339213300030114FenMDTVLGLIELAFYVVSILVLSATITYLVVKISPSNSKKRKAEKA
Ga0311349_1118110013300030294FenMPVVYARMQTVLGLLELTFYVLAILGLSAGVTFAVVKISPTKTA
Ga0311349_1156668523300030294FenGLIELAFYVVSILVLSATITYLVVKISPSNSKKRKAEKA
Ga0307497_1040654123300031226SoilMPVVYARMQTVLGLVELTFYVAGILLLSAGVTYAVVKISPTKTSKPQADKG
Ga0315290_1001623073300031834SedimentMHTIFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQSSDKA
Ga0315290_1002526863300031834SedimentMQTVLGLIELALYVISILTLSAAVTYAVVKISPAKSAKRQPDKV
Ga0315290_1007870633300031834SedimentMQTVLGLIELALYVISILTLSAAVTYGVVKISPAKSAKRQPDKT
Ga0315290_1015864223300031834SedimentMRTVFGLIELAFYVASILTLSAAVTWAVVKISPTKTAQRQTDKA
Ga0315290_1020305323300031834SedimentMKTVLGLLELAFYVVSILTLSAAVTFAVVKISPMKPAKRQTDKT
Ga0315290_1022398223300031834SedimentMQTVFGLIELVFYVASILTLSAAVTYAVVKISPTKTAKRQTDKA
Ga0315290_1056951023300031834SedimentMQTVLGLIELAFYVVSILTLSAAVTYAVVKISPTKTAKRQADKA
Ga0315290_1058157923300031834SedimentMRTVLGLVELVFYVASILTLSAAVTWAVVKISPTKTAKPQPDKA
Ga0315290_1068303623300031834SedimentTIFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQSTDKA
Ga0315280_1018001123300031862SedimentMQTVLGLIELTFYVVSILTLSAAVTYAVVKISPTKTAKRQADKA
Ga0315297_1031775023300031873SedimentMPVVYVRMQTVLGLLELAFYVISILTLSAAVTFAVVKISPAKSAKRQPDKT
Ga0315297_1063148723300031873SedimentMQTVFGLIELVFYVVSILSLSAAVTYAVVKISPTKTAQRRADKA
Ga0315297_1164209513300031873SedimentMQTVLGLIELALYVISILTLSAAVTYAVVKISPAKSAKRQPDKT
Ga0302322_10155545723300031902FenMRTVLGLIELVFYVLSILTLSAAVTWTVVKISPTKTAKRQPDKA
Ga0311367_1017738133300031918FenMPVVYARMQTVLGLLELTFYVLAILGLSAGVTFAVVKISPTKTAKPQSDKS
Ga0315278_1003960123300031997SedimentMPVVYARMQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKV
Ga0315278_1084372923300031997SedimentMQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKA
Ga0315278_1124920713300031997SedimentMRTVLGLLELVFYVCSILALSAGVTYLVVKISPMKPAKRQPDKT
Ga0315272_1026533923300032018SedimentMHTILGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKV
Ga0315272_1035217523300032018SedimentMQTVLGLIELAFYVVSILTLSAAVTYAVVKISPTKTAKRQTDKA
Ga0315272_1058111123300032018SedimentMRTVLGLLELAFYVCSILALSAGVTFLVVKISPTKTAKQQPDKT
Ga0315292_1015448523300032143SedimentMQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKT
Ga0315292_1031140923300032143SedimentMQTVLGLIELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDES
Ga0315292_1165836623300032143SedimentMQTVFGLIELVFYVASILTLSAAVTYAVVKISPTKTAQRQTDKA
Ga0315281_1004630173300032163SedimentMHTFFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQSADKA
Ga0315283_1039386723300032164SedimentPAAHRYPTSRMHTIFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQSTDKA
Ga0315283_1206184523300032164SedimentMETVLGLIELTLYVVGILTLSAAVTYAVVRISPAKSTKRQPDKT
Ga0315283_1229075723300032164SedimentMRTVLGLVELVFYVCSILALSAGVTYLVVKISPLKSAKRQPDKT
Ga0315268_1107356523300032173SedimentMDTVLGLIELAFYVVSILALSATITFVVVKISPSNSKKAKAEKA
Ga0315268_1189389323300032173SedimentMHTFFGLAELAFYVCSILGLSAAVTYAVVRISPSQSAKQSADKT
Ga0315276_1218336913300032177SedimentTVFGLIELVFYVASILTLSAAVTYAVVKISPTKTAKRQTDKA
Ga0315271_1094242923300032256SedimentMPVVYARMQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKT
Ga0315271_1112719113300032256SedimentMDTVLGLIELAFYVVSILVLSATVTYVVVRFSPSRLRKARAEKA
Ga0315270_1013796713300032275SedimentMQTVLGLIELTFYVVSILTLSAAVTYAVVKISPTKTAKRQTDKA
Ga0315270_1028934623300032275SedimentMRTVFGLIELVFYVASILTLSAAVTYAVVKISPTKTAQRQTDKA
Ga0315270_1032226713300032275SedimentMHTIFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQ
Ga0315270_1099500823300032275SedimentMPVVYARMQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKA
Ga0315287_1117087923300032397SedimentMQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQP
Ga0315273_1110892323300032516SedimentTCGMQTVLGLIELALYVISILTLSAAVTYAVVKISPAKSAKRQPDKT
Ga0315273_1239595323300032516SedimentMQTAFGLIELVFYVVSILSLSAAVTWAVVKISPTKTAQRQTDKA
Ga0316605_1105998323300033408SoilMDTILGLLELALYVCTILALSAAVTYAVVRISPSQSAKQSAGKS
Ga0370498_115562_498_6323300034155Untreated Peat SoilMETVLGLLELALYVVGILSLSAAVTYAVVRISPAKSAKRQPDKA


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