Basic Information | |
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Family ID | F098705 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 103 |
Average Sequence Length | 45 residues |
Representative Sequence | MQTVLGLLELAFYVVSILTLSAAVTYAVVKISPAKSAKRQPDKA |
Number of Associated Samples | 69 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 5.83 % |
% of genes near scaffold ends (potentially truncated) | 16.50 % |
% of genes from short scaffolds (< 2000 bps) | 83.50 % |
Associated GOLD sequencing projects | 65 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.49 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (70.874 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (36.893 % of family members) |
Environment Ontology (ENVO) | Unclassified (42.718 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (40.777 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 41.67% β-sheet: 0.00% Coil/Unstructured: 58.33% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.49 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Freshwater And Sediment Freshwater Lake Sediment Freshwater Sediment Freshwater Microbial Mat Sediment Wetland Sediment Freshwater Wetlands Freshwater Wetlands Freshwater Estuarine Natural And Restored Wetlands Wetland Sediment (Intertidal) Watersheds Lake Sediment Soil Glacier Forefield Soil Soil Soil Untreated Peat Soil Natural And Restored Wetlands Soil Corn, Switchgrass And Miscanthus Rhizosphere Sand Fen Avena Fatua Rhizosphere Wastewater |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
LWAnN_09234460 | 2088090009 | Freshwater Sediment | MQTVLGLFELTFYVVSILTLSAAVTYAVVKISPAKSAKRQTDKT |
A_all_C_00821320 | 2140918007 | Soil | MKTVLGLFELAFYVVSILSLSAAVTFAVVKISPVKPAKRQADKA |
JGIcombinedJ13530_1089487852 | 3300001213 | Wetland | MDTILGLLELVLYVCTILALSAAVTYAVVRISPSQSAKQSSGKS* |
Ga0055436_102172292 | 3300004024 | Natural And Restored Wetlands | MQTIFGLAELAFYVCSILGLSAAVTYAVVRISPSQSAKQSADKA* |
Ga0055486_100500282 | 3300004071 | Natural And Restored Wetlands | MRTVLGLIELVFYVCSILALSAAVTYLVVKISPMKTAKPQPDKG* |
Ga0055486_100823542 | 3300004071 | Natural And Restored Wetlands | MTTVLGLIELALYVVSILTLSAAITYAVVKISPAKSAKRQPEKS* |
Ga0063454_1014727502 | 3300004081 | Soil | MPVVYAWMQTVLGLFELLFYVVSILALSAGVTYAVVRISPAKSSKPKPEEA* |
Ga0062383_103465041 | 3300004778 | Wetland Sediment | MQTVLGLLELAFYVVSILTLSAAVTYAVVKISPAKSAKRQPDKA* |
Ga0062383_104438782 | 3300004778 | Wetland Sediment | METVLGLIELALYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT* |
Ga0062380_100484551 | 3300004779 | Wetland Sediment | MDTALGLVELALYVVVILTLSAAVTYVVVRISPAKPAKRQADKS* |
Ga0062380_100929811 | 3300004779 | Wetland Sediment | PMDTILGLVELVFYVCCILALSAAVTYAVVRISPSQAAKQSTDKS* |
Ga0062379_101300061 | 3300004781 | Wetland Sediment | MDTILGLVELVFYVCCILALSAAVTYAVVRISPSQAAKQSTDKS* |
Ga0062382_101684721 | 3300004782 | Wetland Sediment | MSSILGLVELAVYVCSILALSSAVTYAVVRISPSQSAKQSPEKT* |
Ga0068996_101663411 | 3300005218 | Natural And Restored Wetlands | MDTILGLLELTFYVCSILALSAAVTYAVVRISPSQSAKRSAGKS* |
Ga0074472_113421512 | 3300005833 | Sediment (Intertidal) | MKTVLGLIELAFYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT* |
Ga0073922_10562401 | 3300005955 | Sand | MRTVLGLLELVFYVCSILALSAGVTYLVVKISPLKTAKPKPD |
Ga0075028_1005348762 | 3300006050 | Watersheds | METVLGLLALALYVAGILALSAAITYAVVKISPAKPAKRAPDKA* |
Ga0075017_1005620402 | 3300006059 | Watersheds | MHTVFGLLELAFYVVAILALSATVTFLVVKVSPSSSKKPKAEKA* |
Ga0105044_101644212 | 3300007521 | Freshwater | MRTVFGLLELVFYVCSILALSAGVTYLVVRISPMKPAKRQPDKT* |
Ga0102851_133959592 | 3300009091 | Freshwater Wetlands | METVLGLIELALYVVGILTLSAAVTYAVVRISPAKSAKRQPDKG* |
Ga0117941_10070353 | 3300009120 | Lake Sediment | MDTILGLLELVLYVCSILALSAAVTYAVVRISPSQSAKQSAGKD* |
Ga0105094_108330472 | 3300009153 | Freshwater Sediment | MDTILGLLELTLYVCSILALSVAAASSKIRITPSQSAKQSAGKD* |
Ga0130016_106125201 | 3300009868 | Wastewater | MDTILGLLELALYVCSILALSAAVTFAVVKISPSQSAKQPIGKS* |
Ga0150985_1069009822 | 3300012212 | Avena Fatua Rhizosphere | MPVVYARMQTVLGLFELLFYVVSILALSAGVTYAVVRISPAKSSKPKPEEA* |
Ga0157216_101650762 | 3300012668 | Glacier Forefield Soil | MRTVLGLLELLVYVLTILALSAAVTFLVVKISPAKSKKGSAVTDKN* |
Ga0153916_100298802 | 3300012964 | Freshwater Wetlands | MDTILGLVELAFYVCCILGLSAAVTYAVVRISPSQSAKQSADKT* |
Ga0164308_116083812 | 3300012985 | Soil | MPVVYARMRTALGLLELAFYVGAILLLSAGVTYVVVKISPTKTDKQQPDKA* |
Ga0075303_10995922 | 3300014299 | Natural And Restored Wetlands | MRTVLGLIELVFYVCSILALSAGVTYLVVRVSPLKSAKSQPDKG* |
Ga0075340_10505732 | 3300014304 | Natural And Restored Wetlands | MDTALGLLELALYVVSILALSAGMTFAVVKISPAQSAKKRKQADSA* |
Ga0075356_10197722 | 3300014323 | Natural And Restored Wetlands | MRTVLGLVELVFYVCSILALSAGVTYLVVKISPMKPAKRQPDKT* |
Ga0167630_10019663 | 3300015159 | Glacier Forefield Soil | MKTVLGLVELALYVASILTLSAAVTFAVVRISPAKSAQPADKT* |
Ga0167665_10246772 | 3300015163 | Glacier Forefield Soil | MRTVLGLIELAFYVISILTLSAAVTWAVVKISPTKTAKRQPDKA* |
Ga0167665_10862872 | 3300015163 | Glacier Forefield Soil | MRTVLGLIELVFYVVSILALSAAVTFAVVRISPTKSAKQTDKA* |
Ga0167667_10011406 | 3300015189 | Glacier Forefield Soil | MRTVLGLLELVFYVCAILALSAGVTYLVVRISPMKTAKPKPDKG* |
Ga0167667_10027906 | 3300015189 | Glacier Forefield Soil | MRTVLGLLELTFYVCAILALSAGVTYLVVKISPLKTAKPKPDKT* |
Ga0167629_11864272 | 3300015209 | Glacier Forefield Soil | HQMKTVLGLVELALYVASILTLSAAVTFAVVRISPAKSAQPADKT* |
Ga0163144_100192212 | 3300015360 | Freshwater Microbial Mat | MRTVLGLLELVFYVCAILALSAGVTYLVVRISPMKTAKRQPDKT* |
Ga0190271_113023133 | 3300018481 | Soil | MRTVLGLIELVFYVCSILALSAGVTYLVVKVSPMKTAKSQPDKS |
Ga0163153_100087122 | 3300020186 | Freshwater Microbial Mat | MRTVLGLLELVFYVCAILALSAGVTYLVVRISPMKTAKRQPDKT |
Ga0163150_104430491 | 3300020195 | Freshwater Microbial Mat | STHEMRTVLGLLELVFYVCAILALSAGVTYLVVRISPMKTAKRQPDKT |
Ga0207665_104682912 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MPVVYARMRTALGLLELAFYVGAILLLSAGVTYVVVKISPTKTDKPQPDKA |
Ga0209261_100461672 | 3300027735 | Wetland Sediment | MDTILGLVELVFYVCCILALSAAVTYAVVRISPSQAAKQSTDKS |
Ga0209464_101274271 | 3300027778 | Wetland Sediment | MDTILGLVELVFYVCCILALSAAVTYAVVRISPSQAAKQS |
Ga0209797_102425482 | 3300027831 | Wetland Sediment | ILGLVELAVYVCSILALSSAVTYAVVRISPSQSAKQSPEKT |
Ga0209683_102505322 | 3300027840 | Wetland Sediment | MSSILGLVELAVYVCSILALSSAVTYAVVRISPSQSAKQSPEKT |
Ga0209683_102512792 | 3300027840 | Wetland Sediment | METVLGLIELALYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT |
Ga0209798_101665971 | 3300027843 | Wetland Sediment | MKTVLGLIELAFYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT |
Ga0209798_103393902 | 3300027843 | Wetland Sediment | MQTVLGLLELAFYVVSILTLSAAVTYAVVKISPAKSAKRQPDKA |
Ga0209798_104369521 | 3300027843 | Wetland Sediment | HRMETVLGLIELALYVVSILTLSAAVTYAVVRISPAKSAKRQPDKT |
Ga0209591_102235652 | 3300027850 | Freshwater | MRTVFGLLELVFYVCSILALSAGVTYLVVRISPMKPAKRQPDKT |
Ga0209023_106157122 | 3300027870 | Freshwater And Sediment | MRTVLGLLELVFYVCSILALSAGVTYLVVKISPMKSAKRQPDKT |
Ga0209254_100912922 | 3300027897 | Freshwater Lake Sediment | METVLGLIELALYVVGILALSAAITYAVVRISPAKSAKRQPDKT |
Ga0209048_100269982 | 3300027902 | Freshwater Lake Sediment | MDTVFGLLELAFYVVAILALSAAVTFLVVRVSPSSSKKPKAEKA |
Ga0210366_100701252 | 3300028420 | Estuarine | VDTILGLVELAAYVLAILALSAATTLAVIKISPAQSAKKPKQSDSS |
Ga0302263_103890392 | 3300028869 | Fen | MDTVLGLIELAFYVVSILVLSATITYLVVKFSPSNSKKRKAEKA |
Ga0311332_109358132 | 3300029984 | Fen | MQTVLGLLELTFYVLAILGLSAGVTFAVVKISPTKTAKPQSDKS |
Ga0311333_101575561 | 3300030114 | Fen | MDTVLGLIELAFYVVSILVLSATITYLVVKISPSNSKKAKAEKA |
Ga0311333_108433921 | 3300030114 | Fen | MDTVLGLIELAFYVVSILVLSATITYLVVKISPSNSKKRKAEKA |
Ga0311349_111811001 | 3300030294 | Fen | MPVVYARMQTVLGLLELTFYVLAILGLSAGVTFAVVKISPTKTA |
Ga0311349_115666852 | 3300030294 | Fen | GLIELAFYVVSILVLSATITYLVVKISPSNSKKRKAEKA |
Ga0307497_104065412 | 3300031226 | Soil | MPVVYARMQTVLGLVELTFYVAGILLLSAGVTYAVVKISPTKTSKPQADKG |
Ga0315290_100162307 | 3300031834 | Sediment | MHTIFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQSSDKA |
Ga0315290_100252686 | 3300031834 | Sediment | MQTVLGLIELALYVISILTLSAAVTYAVVKISPAKSAKRQPDKV |
Ga0315290_100787063 | 3300031834 | Sediment | MQTVLGLIELALYVISILTLSAAVTYGVVKISPAKSAKRQPDKT |
Ga0315290_101586422 | 3300031834 | Sediment | MRTVFGLIELAFYVASILTLSAAVTWAVVKISPTKTAQRQTDKA |
Ga0315290_102030532 | 3300031834 | Sediment | MKTVLGLLELAFYVVSILTLSAAVTFAVVKISPMKPAKRQTDKT |
Ga0315290_102239822 | 3300031834 | Sediment | MQTVFGLIELVFYVASILTLSAAVTYAVVKISPTKTAKRQTDKA |
Ga0315290_105695102 | 3300031834 | Sediment | MQTVLGLIELAFYVVSILTLSAAVTYAVVKISPTKTAKRQADKA |
Ga0315290_105815792 | 3300031834 | Sediment | MRTVLGLVELVFYVASILTLSAAVTWAVVKISPTKTAKPQPDKA |
Ga0315290_106830362 | 3300031834 | Sediment | TIFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQSTDKA |
Ga0315280_101800112 | 3300031862 | Sediment | MQTVLGLIELTFYVVSILTLSAAVTYAVVKISPTKTAKRQADKA |
Ga0315297_103177502 | 3300031873 | Sediment | MPVVYVRMQTVLGLLELAFYVISILTLSAAVTFAVVKISPAKSAKRQPDKT |
Ga0315297_106314872 | 3300031873 | Sediment | MQTVFGLIELVFYVVSILSLSAAVTYAVVKISPTKTAQRRADKA |
Ga0315297_116420951 | 3300031873 | Sediment | MQTVLGLIELALYVISILTLSAAVTYAVVKISPAKSAKRQPDKT |
Ga0302322_1015554572 | 3300031902 | Fen | MRTVLGLIELVFYVLSILTLSAAVTWTVVKISPTKTAKRQPDKA |
Ga0311367_101773813 | 3300031918 | Fen | MPVVYARMQTVLGLLELTFYVLAILGLSAGVTFAVVKISPTKTAKPQSDKS |
Ga0315278_100396012 | 3300031997 | Sediment | MPVVYARMQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKV |
Ga0315278_108437292 | 3300031997 | Sediment | MQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKA |
Ga0315278_112492071 | 3300031997 | Sediment | MRTVLGLLELVFYVCSILALSAGVTYLVVKISPMKPAKRQPDKT |
Ga0315272_102653392 | 3300032018 | Sediment | MHTILGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKV |
Ga0315272_103521752 | 3300032018 | Sediment | MQTVLGLIELAFYVVSILTLSAAVTYAVVKISPTKTAKRQTDKA |
Ga0315272_105811112 | 3300032018 | Sediment | MRTVLGLLELAFYVCSILALSAGVTFLVVKISPTKTAKQQPDKT |
Ga0315292_101544852 | 3300032143 | Sediment | MQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKT |
Ga0315292_103114092 | 3300032143 | Sediment | MQTVLGLIELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDES |
Ga0315292_116583662 | 3300032143 | Sediment | MQTVFGLIELVFYVASILTLSAAVTYAVVKISPTKTAQRQTDKA |
Ga0315281_100463017 | 3300032163 | Sediment | MHTFFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQSADKA |
Ga0315283_103938672 | 3300032164 | Sediment | PAAHRYPTSRMHTIFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQSTDKA |
Ga0315283_120618452 | 3300032164 | Sediment | METVLGLIELTLYVVGILTLSAAVTYAVVRISPAKSTKRQPDKT |
Ga0315283_122907572 | 3300032164 | Sediment | MRTVLGLVELVFYVCSILALSAGVTYLVVKISPLKSAKRQPDKT |
Ga0315268_110735652 | 3300032173 | Sediment | MDTVLGLIELAFYVVSILALSATITFVVVKISPSNSKKAKAEKA |
Ga0315268_118938932 | 3300032173 | Sediment | MHTFFGLAELAFYVCSILGLSAAVTYAVVRISPSQSAKQSADKT |
Ga0315276_121833691 | 3300032177 | Sediment | TVFGLIELVFYVASILTLSAAVTYAVVKISPTKTAKRQTDKA |
Ga0315271_109424292 | 3300032256 | Sediment | MPVVYARMQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKT |
Ga0315271_111271911 | 3300032256 | Sediment | MDTVLGLIELAFYVVSILVLSATVTYVVVRFSPSRLRKARAEKA |
Ga0315270_101379671 | 3300032275 | Sediment | MQTVLGLIELTFYVVSILTLSAAVTYAVVKISPTKTAKRQTDKA |
Ga0315270_102893462 | 3300032275 | Sediment | MRTVFGLIELVFYVASILTLSAAVTYAVVKISPTKTAQRQTDKA |
Ga0315270_103222671 | 3300032275 | Sediment | MHTIFGLAELTFYVCSILGLSAAVTYAVVRISPSQSAKQ |
Ga0315270_109950082 | 3300032275 | Sediment | MPVVYARMQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQPDKA |
Ga0315287_111708792 | 3300032397 | Sediment | MQTVLGLLELAFYVISILTLSAAVTYAVVKISPAKSAKRQP |
Ga0315273_111089232 | 3300032516 | Sediment | TCGMQTVLGLIELALYVISILTLSAAVTYAVVKISPAKSAKRQPDKT |
Ga0315273_123959532 | 3300032516 | Sediment | MQTAFGLIELVFYVVSILSLSAAVTWAVVKISPTKTAQRQTDKA |
Ga0316605_110599832 | 3300033408 | Soil | MDTILGLLELALYVCTILALSAAVTYAVVRISPSQSAKQSAGKS |
Ga0370498_115562_498_632 | 3300034155 | Untreated Peat Soil | METVLGLLELALYVVGILSLSAAVTYAVVRISPAKSAKRQPDKA |
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