NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F098570

Metagenome Family F098570

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F098570
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 45 residues
Representative Sequence HPDMDELVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Number of Associated Samples 93
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.01 %
% of genes near scaffold ends (potentially truncated) 92.23 %
% of genes from short scaffolds (< 2000 bps) 91.26 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (68.932 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(34.952 % of family members)
Environment Ontology (ENVO) Unclassified
(35.922 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.398 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.42%    β-sheet: 0.00%    Coil/Unstructured: 46.58%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00133tRNA-synt_1 70.87
PF08264Anticodon_1 2.91
PF00248Aldo_ket_red 0.97
PF03841SelA 0.97
PF02749QRPTase_N 0.97
PF13546DDE_5 0.97
PF13650Asp_protease_2 0.97
PF04079SMC_ScpB 0.97
PF13602ADH_zinc_N_2 0.97
PF10458Val_tRNA-synt_C 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0060Isoleucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 70.87
COG0143Methionyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 70.87
COG0495Leucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 70.87
COG0525Valyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 70.87
COG0157Nicotinate-nucleotide pyrophosphorylaseCoenzyme transport and metabolism [H] 0.97
COG1386Chromosome segregation and condensation protein ScpBTranscription [K] 0.97
COG1488Nicotinic acid phosphoribosyltransferaseCoenzyme transport and metabolism [H] 0.97
COG1921Seryl-tRNA(Sec) selenium transferaseTranslation, ribosomal structure and biogenesis [J] 0.97


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A68.93 %
All OrganismsrootAll Organisms31.07 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004091|Ga0062387_100314818All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300005332|Ga0066388_101117582All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans1336Open in IMG/M
3300005332|Ga0066388_106302402Not Available599Open in IMG/M
3300005538|Ga0070731_10044890Not Available2953Open in IMG/M
3300005542|Ga0070732_10893605Not Available543Open in IMG/M
3300005764|Ga0066903_102084549Not Available1091Open in IMG/M
3300005764|Ga0066903_103376133Not Available862Open in IMG/M
3300005995|Ga0066790_10276246All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300006057|Ga0075026_100228642All Organisms → cellular organisms → Bacteria → Acidobacteria990Open in IMG/M
3300006102|Ga0075015_100913109Not Available533Open in IMG/M
3300009038|Ga0099829_10767763Not Available801Open in IMG/M
3300009522|Ga0116218_1346036All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300009522|Ga0116218_1558883Not Available508Open in IMG/M
3300009700|Ga0116217_10145299All Organisms → cellular organisms → Bacteria1588Open in IMG/M
3300010361|Ga0126378_11385195Not Available796Open in IMG/M
3300010398|Ga0126383_13112045Not Available542Open in IMG/M
3300011271|Ga0137393_10456266All Organisms → cellular organisms → Bacteria → Acidobacteria1096Open in IMG/M
3300012202|Ga0137363_10277910Not Available1369Open in IMG/M
3300012582|Ga0137358_10504794Not Available815Open in IMG/M
3300012923|Ga0137359_11007072Not Available715Open in IMG/M
3300012971|Ga0126369_10700646All Organisms → cellular organisms → Bacteria1090Open in IMG/M
3300014162|Ga0181538_10671912All Organisms → cellular organisms → Bacteria → Acidobacteria538Open in IMG/M
3300016270|Ga0182036_10099297All Organisms → cellular organisms → Bacteria1975Open in IMG/M
3300016319|Ga0182033_10691241Not Available892Open in IMG/M
3300016341|Ga0182035_10192912All Organisms → cellular organisms → Bacteria1604Open in IMG/M
3300016445|Ga0182038_10932888Not Available766Open in IMG/M
3300017936|Ga0187821_10119534Not Available981Open in IMG/M
3300017961|Ga0187778_10766936All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium656Open in IMG/M
3300017975|Ga0187782_10432516All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300017994|Ga0187822_10316335All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium555Open in IMG/M
3300018006|Ga0187804_10210969Not Available831Open in IMG/M
3300018058|Ga0187766_10216578Not Available1213Open in IMG/M
3300018086|Ga0187769_11455843All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium518Open in IMG/M
3300018088|Ga0187771_11746246All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300020199|Ga0179592_10334643Not Available668Open in IMG/M
3300020581|Ga0210399_10798796Not Available771Open in IMG/M
3300020581|Ga0210399_11480742Not Available527Open in IMG/M
3300020581|Ga0210399_11519380Not Available519Open in IMG/M
3300020583|Ga0210401_11336988All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium574Open in IMG/M
3300021170|Ga0210400_10386879Not Available1153Open in IMG/M
3300021181|Ga0210388_10049296Not Available3507Open in IMG/M
3300021407|Ga0210383_10783869Not Available816Open in IMG/M
3300021420|Ga0210394_10764387Not Available845Open in IMG/M
3300021433|Ga0210391_10211392Not Available1525Open in IMG/M
3300021560|Ga0126371_13010557Not Available571Open in IMG/M
3300024288|Ga0179589_10212532All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium849Open in IMG/M
3300024310|Ga0247681_1026503All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes848Open in IMG/M
3300025527|Ga0208714_1021364All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1575Open in IMG/M
3300026839|Ga0207764_114445Not Available727Open in IMG/M
3300026895|Ga0207758_1027071Not Available541Open in IMG/M
3300026942|Ga0207783_1025092Not Available589Open in IMG/M
3300027376|Ga0209004_1011041All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1339Open in IMG/M
3300027502|Ga0209622_1112174Not Available500Open in IMG/M
3300027575|Ga0209525_1126806All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium593Open in IMG/M
3300027674|Ga0209118_1055922Not Available1158Open in IMG/M
3300027703|Ga0207862_1141492Not Available720Open in IMG/M
3300027812|Ga0209656_10121116Not Available1347Open in IMG/M
3300027825|Ga0209039_10053896All Organisms → cellular organisms → Bacteria1822Open in IMG/M
3300027911|Ga0209698_10224703All Organisms → cellular organisms → Bacteria1509Open in IMG/M
3300031446|Ga0170820_17813430Not Available1040Open in IMG/M
3300031573|Ga0310915_10378781All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.Bin5201004Open in IMG/M
3300031573|Ga0310915_10402126Not Available972Open in IMG/M
3300031679|Ga0318561_10148298All Organisms → cellular organisms → Bacteria1258Open in IMG/M
3300031713|Ga0318496_10728300Not Available547Open in IMG/M
3300031719|Ga0306917_11381538Not Available543Open in IMG/M
3300031744|Ga0306918_10026436All Organisms → cellular organisms → Bacteria3606Open in IMG/M
3300031748|Ga0318492_10703880Not Available541Open in IMG/M
3300031768|Ga0318509_10024829All Organisms → cellular organisms → Bacteria2858Open in IMG/M
3300031768|Ga0318509_10375384Not Available795Open in IMG/M
3300031771|Ga0318546_11028684Not Available579Open in IMG/M
3300031777|Ga0318543_10097178Not Available1263Open in IMG/M
3300031780|Ga0318508_1184354Not Available597Open in IMG/M
3300031797|Ga0318550_10439362Not Available631Open in IMG/M
3300031798|Ga0318523_10252913Not Available881Open in IMG/M
3300031890|Ga0306925_10939671Not Available886Open in IMG/M
3300031897|Ga0318520_10452389Not Available789Open in IMG/M
3300031912|Ga0306921_10292065Not Available1909Open in IMG/M
3300031912|Ga0306921_10541886All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1350Open in IMG/M
3300031942|Ga0310916_11031539Not Available685Open in IMG/M
3300031942|Ga0310916_11417952Not Available568Open in IMG/M
3300031947|Ga0310909_10917083Not Available719Open in IMG/M
3300031947|Ga0310909_11185844Not Available618Open in IMG/M
3300032008|Ga0318562_10729734Not Available569Open in IMG/M
3300032010|Ga0318569_10488265Not Available574Open in IMG/M
3300032035|Ga0310911_10301269Not Available922Open in IMG/M
3300032051|Ga0318532_10164417Not Available788Open in IMG/M
3300032054|Ga0318570_10283974Not Available752Open in IMG/M
3300032063|Ga0318504_10243938Not Available845Open in IMG/M
3300032068|Ga0318553_10168469Not Available1138Open in IMG/M
3300032076|Ga0306924_12280491Not Available550Open in IMG/M
3300032261|Ga0306920_102768879Not Available668Open in IMG/M
3300032805|Ga0335078_10209563All Organisms → cellular organisms → Bacteria2696Open in IMG/M
3300032892|Ga0335081_11203782All Organisms → cellular organisms → Bacteria → Acidobacteria863Open in IMG/M
3300032893|Ga0335069_11200933Not Available830Open in IMG/M
3300033004|Ga0335084_10714123All Organisms → cellular organisms → Bacteria1021Open in IMG/M
3300033158|Ga0335077_10429673Not Available1412Open in IMG/M
3300033289|Ga0310914_10511428Not Available1086Open in IMG/M
3300033290|Ga0318519_10278551Not Available974Open in IMG/M
3300034091|Ga0326724_0503057Not Available620Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil34.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.68%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil8.74%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.80%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.85%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland4.85%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.88%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.91%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.91%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.91%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.91%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.94%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.97%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.97%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.97%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.97%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.97%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005995Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050EnvironmentalOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009522Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaGEnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300024310Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK22EnvironmentalOpen in IMG/M
3300025527Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300026839Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 52 (SPAdes)EnvironmentalOpen in IMG/M
3300026895Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)EnvironmentalOpen in IMG/M
3300026942Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes)EnvironmentalOpen in IMG/M
3300027376Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027502Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027575Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031780Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300034091Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00NEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062387_10031481813300004091Bog Forest SoilLAGLDMDELVARVLGKMSPDVMQRVTREILKPVIEAIVRDEINSKKS*
Ga0066388_10111758223300005332Tropical Forest SoilAEAAQSAQPDTDELVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS*
Ga0066388_10630240213300005332Tropical Forest SoilAGETVVPEQAAAVQQPNMDELVARVLAKMNPDVMQKVTQEILKPVIEALIKEELKK*
Ga0070731_1004489023300005538Surface SoilVAKVLAKMNPDALQAVTREILKPVIEALVKEELNKK*
Ga0070732_1089360513300005542Surface SoilLVARVVAKISPDVLQRVTQEILKPVIEALIKDELASKR*
Ga0066903_10208454913300005764Tropical Forest SoilAAQAPDMDELVARVLAKMNPDVLQKVTQEILKPVIEAIIKDELSAKK*
Ga0066903_10337613323300005764Tropical Forest SoilPEAAAPDLDALVARVLAKMNPEVLQAVTREILKPVVEAMVREEIKSKKP*
Ga0066790_1027624633300005995SoilAIAEVVPQAAQPNMDDLVARVLSRMNPDILQKVTRDILKPVIEAIIQDELNSQKQ*
Ga0075026_10022864223300006057WatershedsPEAVPVVGEPNVDELVSRVLAKMSPDVLQKVTHELLKPMIETIVRDELSGKK*
Ga0075015_10091310913300006102WatershedsVLSKLNPEVLQALTREILKPVIETIVKDELNAKKP*
Ga0099829_1076776323300009038Vadose Zone SoilAEVQQLDMDALVARVVAKMSPDVLQRVTHEILKPVIEALIKDELASKR*
Ga0116218_134603613300009522Peatlands SoilEADMDELVARVLGKMNPEVLQRVTREILKPVIEAIVRDEINSKKS*
Ga0116218_155888313300009522Peatlands SoilALVARVLEKMSPDVMQKVTHEILKPVIEALVKEELNSHKS*
Ga0116217_1014529913300009700Peatlands SoilARVLAKMSPEMLQKVTHDILKPVIEALVKDELNNHKS*
Ga0126380_1007462023300010043Tropical Forest SoilAAPAEPDMDELVAKVLAKMNPEVLQAVTREILKPVVEALVKDELGKK*
Ga0126378_1138519523300010361Tropical Forest SoilAAQPDMDELVNRVLGKMNPDVLQRVTREILKPVIEAIVRDELDRKG*
Ga0126383_1311204513300010398Tropical Forest SoilLVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSNKS*
Ga0137393_1045626623300011271Vadose Zone SoilARVVAKMSPDVMQRVTQEILKPVIEALIKDELASKR*
Ga0137363_1027791013300012202Vadose Zone SoilLVARVVAKINPDVLQRVTQEILKPVIEALIKDELASKR*
Ga0137358_1050479413300012582Vadose Zone SoilQQADMDALVARVVAKINPDVLQRVTQEILKPVIEALIKDELATKR*
Ga0137359_1100707223300012923Vadose Zone SoilAPGPTTDELVARVLAKMNPDVLQAVTREILKPLVQAMVKDELDKK*
Ga0164299_1159100913300012958SoilPRIHDAVESQSEVPVAGQAAPAGTDLDELVARVLAKMNPEVLQAVTREILKPVVEALVKDELNKK*
Ga0126369_1070064623300012971Tropical Forest SoilAQSAQPDTDELVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSNKS*
Ga0181538_1067191223300014162BogADMDELVARVLGKMNPEVLQRVTREILKPVIEAIVRDEINSKKS*
Ga0182036_1009929723300016270SoilLVARVLQKMNPDVLQKVTRDILRPVIEAIIQDELNSKKS
Ga0182033_1069124123300016319SoilRVLAKMNPDVLQRVTQEILKPVIEAIIKDELNAKK
Ga0182035_1019291223300016341SoilAPAPVEEPKQPDMDELVARVLQKMNPDVLQKVTRDILRPVIEAIIQDELNSKKS
Ga0182038_1093288823300016445SoilDDVVARVLGKLDPEMLEKVTREILKPMIEAIVRDEINSKKS
Ga0187821_1011953423300017936Freshwater SedimentVVQQAQPDMDELVARVLQKMNPDVISRVTQEILKPVIEAIVRDELDSKK
Ga0187778_1076693613300017961Tropical PeatlandVATAIAPAQPDMDELVNRVLGKMNPDVLQRVTREILKPMIEAIVRDELERKGS
Ga0187782_1043251613300017975Tropical PeatlandMDELVAKVLGKMSPDILQKVTREILKPVIEAIVRDEINAKKS
Ga0187822_1031633513300017994Freshwater SedimentEPIPAATAPAQPDMDELVNRVLGKMNPDVLQRVTREILKPVIEAIVRDELERNRS
Ga0187804_1021096913300018006Freshwater SedimentAVAAPAAQPDMDELVARVLGKMNPDMLQKVTREILKPVIEAIIRDELNSKKP
Ga0187766_1021657823300018058Tropical PeatlandDELVNRVLGKMNPDVLQRVTREILKPMIEAIVRDELERKGS
Ga0187769_1145584313300018086Tropical PeatlandAMREPVAAQPAEPDMDELVARVLGKMNPEVLQKVTREILKPVIEAIVRDEINSKKS
Ga0187771_1174624613300018088Tropical PeatlandVTEVPVAAQAAQLDMDELIAKVLSKMNPEVLQKVTREILKPVVEALIRDELDSKKP
Ga0179592_1033464333300020199Vadose Zone SoilDMDALVARVVAKINPDVLQRVTQEILKPVIEALIKDELTSKR
Ga0210399_1079879613300020581SoilMEALVARVVAKMNPDVLQRVTQEILKPVIEALIKDELASKR
Ga0210399_1148074213300020581SoilQQLDMDGLGARVVAKMNPDVLQRVTQEILKPVIEALIKDELASKR
Ga0210399_1151938013300020581SoilEPAAAAEAQQLDMDALVARVVAKMNPDVLQRVTQEILKPVIEALIKDELTSKK
Ga0210401_1133698823300020583SoilLDMDALVARVVAKMSPEVLQRVTQEILKPVIEALIKDELASKR
Ga0210400_1038687933300021170SoilQPDLDALVARVVAKMNPDVLQRVTREILKPVIEALIKDELASKK
Ga0210388_1004929633300021181SoilRVLGKMNPEVLQRVTREILKPVIEAIVRDEINSKKS
Ga0210383_1078386923300021407SoilQPDMDALVARVVAKMSPDVLQRVTQEILKPVIEALIKDELAKK
Ga0210394_1076438723300021420SoilITATRPQANQMDELVARVLQRMNPDVLQKVTQEILRPIIEALVKDELESKK
Ga0210391_1021139213300021433SoilEPDMDELVARVLGKMNPEVLQRVTREILKPVIEAIVRDEINSKKS
Ga0126371_1301055713300021560Tropical Forest SoilPPDMDELVARVLAKMNPDVLQRVTQEILKPVIEAIVRDELDSKKK
Ga0179589_1021253233300024288Vadose Zone SoilMDALVARVVAKINPDVLQRVTQEILKPVIEALIKDELNAKKP
Ga0247681_102650333300024310SoilEQVDLDALVARVVAKMNPDVLQRVTQEILKPVIEALIKDDLATKR
Ga0208714_102136423300025527Arctic Peat SoilDELVARVLSRMNPDILQKVARDILKPVIEAIVQDEMNSRKL
Ga0207764_11444523300026839Tropical Forest SoilRVLGKMNPEVLQKVTHEILKPVIEAIVRDELSSKKS
Ga0207758_102707113300026895Tropical Forest SoilVARVLGKMNPEVLQKVTHEILKPVIAAIVRDELDSKKS
Ga0207783_102509223300026942Tropical Forest SoilVETAQSAQPDMDELVARVLVKMNPEVLQKVTREILKPVIEAIMRDELDSKKS
Ga0209004_101104123300027376Forest SoilEIVARVLGKMNPEVLQRVTREILKPVIEAIVRDEINSKKS
Ga0209622_111217423300027502Forest SoilMPQCTEPDMDELVARVLGKMNPDVLQKVTREILKPVIAAIIRDELDSNKS
Ga0209525_112680613300027575Forest SoilLDMDALVARVVAKMSPDVLQRVTQEILKPVIEALIKDELASKR
Ga0209799_105691523300027654Tropical Forest SoilSAPSTVQPEMDEIVAKVLAKMNPDVLQAVTREILKPVVEALVKDEFNRK
Ga0209118_105592213300027674Forest SoilVAEQQPLDMDALVARVVAKMNPDVLQRVTQEILKPVIEALIKDELASKR
Ga0207862_114149213300027703Tropical Forest SoilQGGEAAPATVAEAGQTAQPDMDELVARVLVKMNPEVLQKVTREILKPVIEAIIRDELDSKKS
Ga0209656_1012111633300027812Bog Forest SoilMDEIVARVLGKMNPEVLQKVTREILRPVIEAIVRDEIASKKR
Ga0209039_1005389613300027825Bog Forest SoilAEAQAPDMDALVARVLSKMSPDVLQKVTQEILKPVIEALIKEELNSKK
Ga0209698_1022470323300027911WatershedsMEALVARVLSKMSPDVLQKVTQEILKPVIEALIKEELNSKK
Ga0170820_1781343013300031446Forest SoilTAQTPQLDMEALVARVLAKMNPDVLQRVTQEILKPVIEALIKDELTSKK
Ga0310915_1037878123300031573SoilTAPPDMDELVARVLAKMNPDVLQRVTQEILKPVIEAIVRDELDSKKK
Ga0310915_1040212623300031573SoilDMDELVARVLTKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0318561_1014829813300031679SoilAAQSAHPDMDELVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0318496_1072830023300031713SoilAQSAQPDMDELVARVLVKMNPEVLQKVTREILKPVIEAIIRDELDSKKS
Ga0306917_1138153813300031719SoilRVLTKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0306918_1002643613300031744SoilEEPKQPDMDELVARVLQKMNPDVLQKVTRDILRPVIEAIIQDELNSKKS
Ga0318492_1070388013300031748SoilQPDMDELVARVLVKMNPEVLQKVTREILKPVIEAIIRDELDCKKS
Ga0318509_1002482923300031768SoilEAAQSAHPDMDELVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0318509_1037538423300031768SoilLVARVLAKMNPEVLQRVTREILKPVIEAIIRAELDSQKS
Ga0318546_1102868413300031771SoilQSPQPDMDELVARVLTKMNPDVLQKVTREILKPVIEAIVRDELDSKKS
Ga0318543_1009717823300031777SoilLVARVLVKMNPEVLQKVTREILKPVIEAIIRDELDCKKS
Ga0318508_118435423300031780SoilAQSAQPDTDELVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0318550_1043936213300031797SoilDELVARVLVKMNPEVLQKVTREILKPVIEAIIRDELDCKKS
Ga0318523_1025291323300031798SoilRVLVKMNPEVLQKVTREILKPVIEAIIRDELDCKKS
Ga0306925_1093967113300031890SoilVARVLAKMNPDVLQRVTQEILKPVIEAIIKDELNAKK
Ga0318520_1045238913300031897SoilVARVLLKMNPEVLQKVTREILKPVIEAIIRDELHSKKS
Ga0306921_1029206523300031912SoilMDELVARVLGKMNPEVLQRVTHEILKPVIEAIVRDELDSKNSRKS
Ga0306921_1054188613300031912SoilQSAQPDMDELVARVLGKMNPEVLQKVTREILKPVIEAIIRDELESKKS
Ga0310916_1103153923300031942SoilVLAKMNPDVLQKVTREILKPVIDAIIRDELDSKKP
Ga0310916_1141795223300031942SoilSAQPDMDELVARVLVKMNPEVLQKVTREILKPVIEAIIRDELHSKKS
Ga0310909_1091708323300031947SoilPAPVEEPKQPDMDELVARVLQKMNPDVLQKVTRDILRPVIEAIIQDELNSKKS
Ga0310909_1118584423300031947SoilRVLGKMNPDVLQRVTREILKPVIEAIVRDELDRKG
Ga0318562_1072973413300032008SoilHPDMDELVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0318569_1048826513300032010SoilQSAQPDMDELVARVLVKMNPEVLQKVTREILKPVIEAIIRDELDCKKS
Ga0310911_1030126913300032035SoilLVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0318532_1016441713300032051SoilGESRAEERAAAAQPAEPDMDELVARVVAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0318570_1028397423300032054SoilAQPDMDELVARVLVKMNPEVLQKVTREILKPVIEAIIRDELDCKKS
Ga0318504_1024393823300032063SoilDELVARVLAKMNPEVLQRVTREILKPVIEAIIRAELDSQKS
Ga0318553_1016846923300032068SoilQEPHHAAEAEEPQSVQPDMDELVARVLAKMNPEVLQRVTREILKPVIEAIIRAELDSQKS
Ga0306924_1228049113300032076SoilPDTDELVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0307470_1125075223300032174Hardwood Forest SoilSEASSVEASMDEIVAKVLAKMNPDVLQAVTREILKPVVEALVKDELNKK
Ga0306920_10276887913300032261SoilVARVLVKMNPEVLQKVTREILKPVIEAIIRDELHSKKS
Ga0335078_1020956313300032805SoilQTPNMDELVARVLGKMNPEVLQKVTREILKPVIEAIVRDELDSKK
Ga0335081_1120378233300032892SoilPNMDELVARVLGKMNPEVLQKVTREILKPVIEAIVRDELDSKK
Ga0335069_1120093313300032893SoilAAAQPDMDELVARVLGKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0335084_1071412313300033004SoilVARVLGKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0335077_1042967323300033158SoilSVAEAPNLDDLVARVLGKMSPEVLQKVTQEILKPVIEAIVRDELNAKK
Ga0310914_1051142823300033289SoilVGAAQSAQPDMDELVARVLGKMNPEVLQKVTREILKPVIEAIIRDELESKKS
Ga0318519_1027855123300033290SoilAQSAHPDMDELVARVLAKMNPDVLQKVTREILKPVIEAIIRDELDSKKS
Ga0326724_0503057_44_1693300034091Peat SoilMDDLVARVLARMNPDVLQKMTREILKPVIEAIVQDEINSKK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.