Metagenome Family F098547

Overview

Basic Information

• Family ID: F098547
• Family Type: Metagenome
• Number of Sequences: 103
• Average Sequence Length: 64 residues
• Representative Sequence: MKQIFLFVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLIIVGTSSLLMNLFWASKKKQKSIEE
• Number of Associated Samples: 44
• Number of Associated Scaffolds: 103

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 84.47 %
• % of genes near scaffold ends (potentially truncated): 11.65 %
• % of genes from short scaffolds (< 2000 bps): 64.08 %
• Associated GOLD sequencing projects: 39
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (43.689 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater (26.214 % of family members)
• Environment Ontology (ENVO): Unclassified (32.039 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline) (28.155 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 63.44%
  β-sheet: 0.00%
  Coil/Unstructured: 36.56%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00005	ABC_tran	51.46
PF12679	ABC2_membrane_2	4.85
PF03988	DUF347	3.88
PF12728	HTH_17	1.94
PF13732	DUF4162	1.94
PF13328	HD_4	0.97
PF13185	GAF_2	0.97
PF10431	ClpB_D2-small	0.97
PF05157	T2SSE_N	0.97
PF07508	Recombinase	0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG4705	Uncharacterized membrane-anchored protein	Function unknown [S]	3.88
COG0507	ATPase/5’-3’ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.97
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	0.97
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.97
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	0.97
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.97
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.97
COG1386	Chromosome segregation and condensation protein ScpB	Transcription [K]	0.97
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.97
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.97

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.14 %
Unclassified	root	N/A	37.86 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.14 %
Unclassified	root	N/A	37.86 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	18.45 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.69 %
Unclassified	root	N/A	37.86 %

Level 4

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.97 %
Dictyoglomi	phylum	All Organisms → cellular organisms → Bacteria → Dictyoglomi	1.94 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	2.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.74 %
Unclassified	root	N/A	37.86 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.97 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.94 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.85 %
Dictyoglomia	class	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.97 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	1.94 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2.91 %
Unclassified	root	N/A	37.86 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %
Candidatus Fraserbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria	0.97 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
Dictyoglomales	order	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.97 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.97 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.97 %
Thaumarchaeota incertae sedis	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis	2.91 %
Unclassified	root	N/A	37.86 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Candidatus Nitrosotalea	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea	2.91 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
Dictyoglomaceae	family	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Methanotrichales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales	0.97 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.97 %
Natrialbales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales	0.97 %
Unclassified	root	N/A	37.86 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Candidatus Nitrosotalea okcheonensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	2.91 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
Dictyoglomus	genus	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Methanotrichaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae	0.97 %
Methylovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum	0.97 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.97 %
Unclassified	root	N/A	37.86 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Candidatus Nitrosotalea okcheonensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	2.91 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
Dictyoglomus thermophilum	species	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus → Dictyoglomus thermophilum	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Methanothrix	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	0.97 %
Methylovulum miyakonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum miyakonense	0.97 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.97 %
Unclassified	root	N/A	37.86 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Candidatus Nitrosotalea okcheonensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	2.91 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
Dictyoglomus thermophilum	species	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus → Dictyoglomus thermophilum	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Methylovulum miyakonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum miyakonense	0.97 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.97 %
Unclassified	root	N/A	37.86 %
unclassified Methanothrix	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix	0.97 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Candidatus Nitrosotalea okcheonensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	2.91 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
Dictyoglomus thermophilum	species	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus → Dictyoglomus thermophilum	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Methanosaeta sp. ASM2	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. ASM2	0.97 %
Methylovulum miyakonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum miyakonense	0.97 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.97 %
Unclassified	root	N/A	37.86 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000571|JGI1358J11329_10000473	All Organisms → cellular organisms → Bacteria	35932
3300000571|JGI1358J11329_10000576	All Organisms → cellular organisms → Bacteria	32642
3300000571|JGI1358J11329_10001212	All Organisms → cellular organisms → Bacteria	21603
3300000571|JGI1358J11329_10003164	All Organisms → cellular organisms → Bacteria	12364
3300000571|JGI1358J11329_10007176	All Organisms → cellular organisms → Bacteria	7342
3300000571|JGI1358J11329_10046250	All Organisms → cellular organisms → Bacteria	1811
3300000571|JGI1358J11329_10103477	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	914
3300000571|JGI1358J11329_10110248	Not Available	869
3300000571|JGI1358J11329_10236320	Not Available	504
3300003852|Ga0031655_10005266	All Organisms → cellular organisms → Bacteria	7030

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	94.17%
Terrestrial	Environmental → Terrestrial	5.83%

Category

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.97%
Freshwater	Environmental → Aquatic → Freshwater	77.67%
Marine	Environmental → Aquatic → Marine	5.83%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.97%
Sediment	Environmental → Aquatic → Sediment	0.97%
Soil	Environmental → Terrestrial → Soil	4.85%
Unclassified	Environmental → Aquatic → Unclassified	8.74%

Type

Habitat	Taxonomy	Distribution
Aquifer	Environmental → Terrestrial → Deep Subsurface → Aquifer	0.97%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	2.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	27.18%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.83%
Lake	Environmental → Aquatic → Freshwater → Lake	31.07%
Lentic	Environmental → Aquatic → Freshwater → Lentic	14.56%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.97%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	8.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%

Subtype

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.97%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	26.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	19.42%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	13.59%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	11.65%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	8.74%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified	0.97%

Habitat

Habitat	Taxonomy	Distribution
Aquifer Solids	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Aquifer Solids	0.97%
Beach Aquifer Porewater	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater	8.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.97%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.65%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.97%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	13.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.97%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.97%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	26.21%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.97%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.97%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.97%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	4.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	18.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	2.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.97%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000571	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m	Environmental
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300004775	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M	Environmental
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental
3300009514	Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1W	Environmental
3300009538	Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - H-2W	Environmental
3300009566	Methanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1358J11329_1000047339	3300000571	Groundwater	MRQIFLFISLAVLGFGLYLKFFYDVPDSQMQINFFASWFLIIVGIASLLMNLFWNNSKKRRE*
JGI1358J11329_1000057634	3300000571	Groundwater	MKQIFLFISIAVIGAGLYLKFFYDVPDSQIATNFFVSGFLIIVGISSLLINLFWTTPKNKNR*
JGI1358J11329_1000121221	3300000571	Groundwater	MRQIFLFVSLAVLGFGAYLKFFYDVPDAQIQINFFVGWFLIIVGVASLLMNLFWSNPKKRKEE*
JGI1358J11329_100031646	3300000571	Groundwater	MKQIFLFVSLAVLGFGLYLKFFYDTPDSQIQINFFVSWFLIIVAIASLLMNLFWSNPKKRKEE*
JGI1358J11329_100071769	3300000571	Groundwater	MKQIFLSVSLAVIGFGLYLKFFYDAPDEQITVNFFVSWFLIIVGTSSLLMNLFWSSKKKQRSISE*
JGI1358J11329_100462503	3300000571	Groundwater	MKQIFLFVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLIIVGTSSLLMNLFWASKKKQKSIEE*
JGI1358J11329_101034772	3300000571	Groundwater	MKQIFLFISFIVIGLGLYLKYFYDVPDEQITINFFVSGFFIIVGIASLLINIFWTTQVKNNKEL*
JGI1358J11329_101102482	3300000571	Groundwater	MRQIFLFVSLAVLGFGFYLKFFYDVPDSQIQINFFVSWFLIIVGGASILMNLFWSGPRKKKNNDA*
JGI1358J11329_102363202	3300000571	Groundwater	MKQIFLFISLAVIGVGLYLMYFYDVPDSQVSINFFVSWFFVIVGVSSLLTNLFWTTKPKPKNPDHL*
Ga0031655_100052667	3300003852	Freshwater Lake Sediment	MRQFLFVVSLALLGSGVYLKLFYDVPDSAEVINFFVSWFLVIVGVASLLINLLWSSPRKTR*
Ga0031655_101463382	3300003852	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFIITGISSLLINLLWDSKKKEKNLE*
Ga0031654_100069153	3300003861	Freshwater Lake Sediment	MKQIFIFVSLIVLGCGLYLGFFYDVPDDQETTNFFVSGFLIIMGISSLLINLFWSTPKHKHNKE*
Ga0062386_1005960271	3300004152	Bog Forest Soil	MRQIFLFVSLAVIGFGLYLKFFYDTPDHQVTINCFVSWFLIIAGSSSLLMNPFWTSKRRQKSVNE*
Ga0007798_100684632	3300004775	Freshwater	MRQIFLFISLAVLGFGLYLRLFYDAPDSQEKINFFVSWFLMIIALSSLLINLFWDTKKKRTDGE*
Ga0075026_1001616502	3300006057	Watersheds	MKQIFLFVSIFLVGVGFYLMYFYDVPDEQATINFFVSWFLMIVGISSLLINVVWKDTAKSSKHKNV*
Ga0102851_110869662	3300009091	Freshwater Wetlands	MKQIFIFVSLIVLGCGLYLGFFYDVPDDQETTNFFVSGFLIIMGLSSLLINLFWDRPKKAHNKE*
Ga0129284_102384712	3300009514	Beach Aquifer Porewater	MKQIFFFISLAVLGFGLYLKFFYDVPDSQASINFFVSGFLIIVGLSSMLINLFWGKSKKHSRGNHE*
Ga0129287_1000035730	3300009538	Beach Aquifer Porewater	MGEQMRQVFLFVSLAIIGIGLYLKFFYDVPDNQATINFFTSWFFIIVGTSNLLINLFWSSPKNKKFNKQSE*
Ga0129287_1000372510	3300009538	Beach Aquifer Porewater	MRQIFFFISLVVLGFGLYLKFFYDVPDSQAAINFFVSGFLIIIGLSSMLINLFWGKPKHSRGNHE*
Ga0129287_100584593	3300009538	Beach Aquifer Porewater	MGEQMRQVSLFVSLAIIGIGLYLKFFYDVPDAQETINFFTSWFFIIVGTSSLLINLFWGSPKNKNSNKQSK*
Ga0129287_101707422	3300009538	Beach Aquifer Porewater	MRQVFLFVSLAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIIGVSSLLVNFFWDSPKNKNSHKEQK*
Ga0129287_101815881	3300009538	Beach Aquifer Porewater	LAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSSLLINLFWGSPKKKNSNKKSE*
Ga0129287_102169282	3300009538	Beach Aquifer Porewater	MKQIFLFITIAIIGLGLYLKYFYDVPDSQAAINFFVSWFFIIVGAAGLLVNISWTAKPRRKDDSNI*
Ga0129287_102361562	3300009538	Beach Aquifer Porewater	VFLFVSLVFIGLGLYLKFFYDVPDSQETINFFTSWFFIIVGISSLLINLFWSSPKKNSNQKSK*
Ga0129287_105915751	3300009538	Beach Aquifer Porewater	MGEQMRQVFLFVSLAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSSLLINLFWDSPKNSNKQSE*
Ga0130025_10149309	3300009566	Aquifer Solids	MRQILLFISLAVLCFGLYLKLFYDVPDSQEKINFFVSGFFIIIGISSLLMNLLWDTKKRKNRE*
Ga0105164_101454833	3300009777	Wastewater	MRQVFLFVSLAIIGIGLYLNFFYDVPDSQATINFFTSWFFIIMGTSGLLINLFWGSPKNKDSHKE
Ga0105164_103543462	3300009777	Wastewater	MKQVFFFISLAVLGFGLYLKLFYDVPDAQTDINFFVSWFLIIVGVASMLINLFWTAEKKQRKTE*
Ga0136847_129967152	3300010391	Freshwater Sediment	MRQIFLFISFAVVGAGLYLKFFNDVPDNQEAINSFVSWFLVIIGISSFFINIFWSSPRKTPHNKKQ*
Ga0163202_10987092	3300013086	Freshwater	MRQVFLFVSLAIIGIGLYLKFFYDVPDVQETINFFTSWFFIIVGTSSLLINLFWGSPKNKSSHNEQK*
Ga0163200_10481603	3300013088	Freshwater	MGEQMRQVFLFVSLAIIGVGLYLKFFYDVPDAQETINFFTSWFFIIVGTSSLLINLFWGSPKNKDSHKEQK*
Ga0163200_12034892	3300013088	Freshwater	MRQVFLFVSLAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSSLLINLLWDSPKNKNSNKQSE*
Ga0163199_10786262	3300013092	Freshwater	MRQIFLFVSLAVIGFGLYLKFFYDTPDEQIIINFFVSGFLIIVGISSLLVNLFWSPRKKQRSSNE*
Ga0163199_12712482	3300013092	Freshwater	MKQIFLFLSLFLIGVGFYLKFFYDVPDVQETINFFVSWFLMIVGASSLLINLFWKDSSKPTNNRNI*
Ga0163199_12779282	3300013092	Freshwater	MGEQMRQVFLFVSLAIIGIGVYLKFFYDVPDVQETINFFTSWFFIIVGTSSLLINLFWGSPKNSHKDQK*
Ga0180009_1000202525	3300015370	Groundwater	MRQVFLFVSLAITGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSGLLINLFWNSPKNKNSNKQSE*
Ga0187776_111390592	3300017966	Tropical Peatland	MKQIFIFISLLVLGFGLYLKFFYDVPDSQETINFFVSGFLIIMGISSLLINLFWSTQKKERNKE
Ga0210406_106810872	3300021168	Soil	MRQIFLFVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLIIVGASSLLMNVAWSTSKKRRDKEE
Ga0210408_100001196	3300021178	Soil	MRQIFLFVSLAVVGFGLYLKFFYDTPDDQITINFFVSWFLIIVGSSSLLMNLFWSSKKKQRNLDE
Ga0210408_101865282	3300021178	Soil	MRQVFLFVSLAVIGFGLYLKFFYDTPDDQITINFFVSWFLIIVGSSSLLMNLFWSSKKKQRNIDE
Ga0210408_105990792	3300021178	Soil	MKQIFLFVSLVVIGAGLYLMYFYDVPDSQLSINFFVSWFLVIVGCSSLLINLFWSTKPKDRNRQSE
Ga0212124_100280453	3300022553	Freshwater	MRQVFLFVSLAIIGVGLYLKFFYDVPDAQETINFFTSWFFIIVGTSSLLINLFWGSPKNKDSHKEQK
Ga0212124_101557363	3300022553	Freshwater	MRQVFLFVSLAIIGIGVYLKFFYDVPDVQETINFFTSWFFIIVGTSSLLINLFWGSPKNSHKDQK
Ga0212124_103322102	3300022553	Freshwater	MRQVFLFVSLTIIGVGLYLKFFYDVPDAQETINFFTSWFFIIVGTSSLLINL
Ga0212124_104792142	3300022553	Freshwater	MRQVFLFVSLAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSSLLINLLWDSPKNKNSNKQSE
Ga0212124_105129982	3300022553	Freshwater	MRQVFLFVSLAIIGIGLYLKFFYDVPDVQETINFFTSWFFIIVGTSSLLINLFWGSPKNKSSHNEQK
Ga0212124_107099071	3300022553	Freshwater	QMRRVFLFVSLIIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSCLLINLFWGSPKNKNYNKQSE
Ga0209824_102286532	3300025173	Wastewater	MRQVFLFVSLAIIGIGLYLNFFYDVPDSQATINFFTSWFFIIVGTSSLLINLFWGSSKNKNSNKE
Ga0209515_1000011174	3300027835	Groundwater	MKQIFLFISIAVIGAGLYLKFFYDVPDSQIATNFFVSGFLIIVGISSLLINLFWTTPKNKNR
Ga0209515_1000381516	3300027835	Groundwater	MKQIFLFVSLAVLGFGLYLKFFYDTPDSQIQINFFVSWFLIIVAIASLLMNLFWSNPKKRKEE
Ga0209515_100039047	3300027835	Groundwater	MRQIFLFVSLAVLGFGFYLKFFYDVPDSQIQINFFVSWFLIIVGGASILMNLFWSGPRKKKNNDA
Ga0209515_1000594919	3300027835	Groundwater	MKQIFLFISLAVIGVGLYLMYFYDVPDAQAAINFFVSWFFIIVGISSLLINIFWTSTPAHKKLI
Ga0209515_1000710410	3300027835	Groundwater	MRQIFLFVSLAVLGFGAYLKFFYDVPDAQIQINFFVGWFLIIVGVASLLMNLFWSNPKKRKEE
Ga0209515_1000810812	3300027835	Groundwater	MKQIFLFISFIVIGLGLYLKYFYDVPDEQITINFFVSGFFIIVGIASLLINIFWTTQVKNNKEL
Ga0209515_100132089	3300027835	Groundwater	MKQIFLSVSLAVIGFGLYLKFFYDAPDEQITVNFFVSWFLIIVGTSSLLMNLFWSSKKKQRSISE
Ga0209515_100168115	3300027835	Groundwater	MKQIFLFVSLAIIGFGLYLKFFYDTPDEQIVINFFVGWFLIIVGISSLLMNLFWSSKKKQKSSDQ
Ga0209515_100329892	3300027835	Groundwater	MKQIFLFVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLIIVGTSSLLMNLFWASKKKQKSIEE
Ga0209515_100380005	3300027835	Groundwater	MKHTFIFISLGIIGIGFYFMFFYDVPDVQANINFFTSWFLVIVGVASLLVNLFWKSKRKE
Ga0209515_100532622	3300027835	Groundwater	MRQIFLFVSLAVIGFGIYLKFFYDTPDDQVTINFFVSWFLIIVGTSSLLMNLFWSSKKKQRSLDE
Ga0209515_100543444	3300027835	Groundwater	MKHIFIFISLGIIGIGFYFMFFYDVPDVQVNINFFSSWFLVIVGVASLLVNLFWQSKKKE
Ga0209515_100726943	3300027835	Groundwater	MRQIFLFVSLAIVGFGLYLKFFYDVPDAQITINFFVGWFLIIVGVSSLLMNIVWSTSRKNKDE
Ga0209515_100764542	3300027835	Groundwater	MKQIFLFISLAVIGVGLYLMYFYDVPDSQVSINFFVSWFFVIVGVSSLLTNLFWTTKPKPKNPDHL
Ga0209515_102045272	3300027835	Groundwater	MKQIFLFISLAVLGFGLYLNIFYDVPDAQITINFFVSWFLIIVGVASILVNLFWTAEKKQRKTE
Ga0209515_103335832	3300027835	Groundwater	MRQIFIFVSLAVLGFGLYLKFFYDTPDEQMAINFFVSGFLVIIGTSSLLINLFWSTKKRERNMEE
Ga0209515_103571372	3300027835	Groundwater	MRQIFLFVSLAIIGFGLYLKFFYDTPDAQMTINFFVGWFLVIVGTSSLLINLFWSTKRKRSTIDE
Ga0209515_104989282	3300027835	Groundwater	FVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLLIVGASSLLMNLFWSKKKKQRNLEQ
Ga0209777_1000187812	3300027896	Freshwater Lake Sediment	MRQFLFVVSLALLGSGVYLKLFYDVPDSAEVINFFVSWFLVIVGVASLLINLLWSSPRKT
Ga0209777_100156107	3300027896	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFIITGISSLLINLLWDSKKKEKNLE
Ga0209777_103332441	3300027896	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFIIIGISSLLTNLLWDTKKKEKNLE
Ga0209777_104054422	3300027896	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFMIIGISSLLINLLWDTKKKEKNPE
Ga0209777_106550211	3300027896	Freshwater Lake Sediment	MKQVFLFISFAVIGAGIYLKYFYDVPDSQTEINYFVSWFFIIVGISSLLINIFWQTKKPPRNIE
Ga0209777_106956732	3300027896	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFITIGISSLLINLLWDTKKKEKNLE
Ga0209777_108890522	3300027896	Freshwater Lake Sediment	MRQIFLFISLAVLCFGLYLRLFYDVPDSQEKINFFVSWFLIIIALSSLLINLFWDTKKKRTDGE
Ga0209253_103343582	3300027900	Freshwater Lake Sediment	MKQIFIFVSLIVLGCGLYLGFFYDVPDDQETTNFFVSGFLIIIGISSLLINLFWSTPKNKHNKE
Ga0209048_100202748	3300027902	Freshwater Lake Sediment	MRQIFLFVSLAVIGFGIYLKYLYDVPDSQETINFFVSGFLIIVGVGTLLMNLVWKSTKA
Ga0209048_100686153	3300027902	Freshwater Lake Sediment	MRQIFLFVSLGMLCFGLYLGFFYDVPDSQEKINFFVSWFFIIIGISSLLMNLLWDTEKKEKNRE
Ga0209048_101819823	3300027902	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFIIIGISSLLINLLWDTKKKEKILE
Ga0265595_11335222	3300028191	Saline Water	MKNIFLFISIIIIGIGAYLKFVYDVPDNQESINFFVSWFLIIVGISSILINLFWKTPNQKNKVKD
Ga0315555_10103803	3300031257	Salt Marsh Sediment	MRQILLFVSMAVIGGGLYLKLFYDVPDSQTQINFFVSWFFIIIGVGSLLVNIFWGNTGDKENRNKD
Ga0315555_13284262	3300031257	Salt Marsh Sediment	MRQIFLFISMVVIGIGLFLKFFYDVPDAQETINFFTSWFFIIIGLSSLLINLVWDSPKK
Ga0307425_11591142	3300031277	Salt Marsh	MRQIFLFISLVVIGIGLFLKFFYDVPDAQETINFFTSWFFIIIGLSSLLINLVWDSPKK
Ga0315542_10507013	3300031552	Salt Marsh Sediment	LRVGESMRQIFLFISLVVIGIGLFLKFFYDVPDAQETINFFTSWFFIIIGLSSLLINLVWDSPKK
Ga0315542_12115042	3300031552	Salt Marsh Sediment	MKQILLFISMAIIGIGLYFTLFYDVPDSQTQINFFVSWFFIIIGIGSLLVNIFWGNPGDKKTDNKN
Ga0315537_11655932	3300031698	Salt Marsh Sediment	MRQILLFVSMAVIGGGLYLKLFYDVPDSQTQINFFVSWFFIIIGVGSLLVNIFWGNTGDKEN
Ga0315291_100273264	3300031707	Sediment	MIQIFIFISLAMLVFGLYLALFYDVPDSQEKINFFVSWCLIIVGISSFLINLFWDTKKRRKNGE
Ga0315291_100885135	3300031707	Sediment	MRQIFLFVSLAMLCFGLYLGLFYDVPDSQEKINFFVSWFLIIIGISSLLINLLWDAKKKRKD
Ga0315291_104073431	3300031707	Sediment	MRQIFLFISLVIIGAGLYLKFIYDVPDSEEVINFFVSGFLIIVGISSLLVNLFWSTKPVRKNHD
Ga0315297_106783432	3300031873	Sediment	MKTIFLIISLGVIGLGLYLKVFSDVQDSQETINTFVSWFLIICGISSALINLLWTRKRTR
Ga0315285_103032642	3300031885	Sediment	MKQIFLFVSLAVVGFGVYLKYLYDVPDSQETINFFVSGFLIIVGIGSLLVNLFWKSSPFQKKSRE
Ga0315294_100375235	3300031952	Sediment	MRQIFLFVSLAVVGFGVYLKYLYDVPDSQETINFFVSGFLIIVGIGSLLVNLFWKSSPFQKKSRE
Ga0315278_1000017540	3300031997	Sediment	MRQIAIFISLAVLGVGLYLKYFNDVPDSQETINFFVSGFLIIVGVGTLLMNLVWKSTKAKPPEQK
Ga0315278_114842772	3300031997	Sediment	MKQIFLFISIAIICAGLYLRLFYDVPDAQEQTNFFVSWFFIIIGSGSLLINVFWNHKKKISNQE
Ga0315274_104245812	3300031999	Sediment	MKQIFIFISLAMLVFGLYLALFYDVPDSQEKINFFVSWCLIIVGISSFLINLFWDSKKRGKNWE
Ga0315274_108381822	3300031999	Sediment	MRQILFFISLAVLAFGLYLKFFHDVPDTQEAINFFVSWFLIIVSTSSMLVNMFWSKTKNSKDDDE
Ga0315284_109284751	3300032053	Sediment	IGAGLYLKFIYDVPDSEEVINFFVSGFLIIVGISSLLVNLFWSTKPVRKNHD
Ga0315282_1000380010	3300032069	Sediment	MRQVLFFISVALLGIGIYLKFFYDVPDADQAINFFTSWFFIIIGVASLLINLFWSSPKKT
Ga0315282_106337191	3300032069	Sediment	MRQIFLFVSLTVLGFGLYLRFFYDVPDSQTQINFFVSWFLIIVGISSLLMNLFWTRVKK
Ga0315279_104648552	3300032070	Sediment	MRQILLIISLAIIGVGLYLKFVYDVPDSEETINFFVSGFLIIVGISSLLVNLFWSTKPVKKNHDRE
Ga0315277_117201982	3300032118	Sediment	MRQIFLFISIAIICFGLYLKFIYDVPDSEERINFFVSGFLIVVGTSSLLVNLFWSTKPVRKNHD
Ga0315292_111472782	3300032143	Sediment	MRQIFLFISLVIIGAGLYLKFIYDVPDSEEMINFFVSGFLIIVGISSLLVNLFWSAKPVRKNHDQE
Ga0315295_104508352	3300032156	Sediment	MRQIFLFVSLAVVGFGVYLKYLYDVPDSQETINFFVSGFLIIVGVGSLLVNLFWKSSPSQRKSQE
Ga0315281_120627251	3300032163	Sediment	MKQTFLFIAIAIIGVGLYLKYFYDVPDSQAAINFFVSWFFVIIGVAGLLVNIFWTTKSKHKEGGDI
Ga0315268_102504692	3300032173	Sediment	MRQVFLFVSLAIIGVGLYLKFFYDVPDVKESINFFTSWFFIITGTSSLLINLFWGSSKNKDSHKEQK