NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F098419

Metagenome Family F098419

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098419
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 60 residues
Representative Sequence DLDGAMAQALSLLATVPGQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPT
Number of Associated Samples 74
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.00 %
% of genes near scaffold ends (potentially truncated) 94.17 %
% of genes from short scaffolds (< 2000 bps) 89.32 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (50.485 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(61.165 % of family members)
Environment Ontology (ENVO) Unclassified
(81.553 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(66.019 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.
1Ga0062389_1025286881
2Ga0123355_117456781
3Ga0126373_113915621
4Ga0126373_120648451
5Ga0126373_122412352
6Ga0123356_123041361
7Ga0126378_133515241
8Ga0182036_105241911
9Ga0182035_116134741
10Ga0182035_116397311
11Ga0182032_101719381
12Ga0182032_102435801
13Ga0182032_107609951
14Ga0182032_114297931
15Ga0182040_105092431
16Ga0182037_101670192
17Ga0182039_106910931
18Ga0182039_112239861
19Ga0187807_12533381
20Ga0187824_102100262
21Ga0187780_111954241
22Ga0187777_107642182
23Ga0187782_110921951
24Ga0187804_105132071
25Ga0187805_101555381
26Ga0318541_106104571
27Ga0318538_107062851
28Ga0318528_102567321
29Ga0318515_104245731
30Ga0310915_108834431
31Ga0318542_100938891
32Ga0318561_100148434
33Ga0318561_105926061
34Ga0318572_100471423
35Ga0318496_100962173
36Ga0318496_103603082
37Ga0318496_104545971
38Ga0318493_106599521
39Ga0318502_104750591
40Ga0318537_102980932
41Ga0318537_103436591
42Ga0318535_101236003
43Ga0318535_103905331
44Ga0318554_100472373
45Ga0318554_102230614
46Ga0318509_100782813
47Ga0318546_100178291
48Ga0318543_102445701
49Ga0318543_104178041
50Ga0318508_10100631
51Ga0318552_102469081
52Ga0318529_105987261
53Ga0318529_106071191
54Ga0318548_100575301
55Ga0318497_104887392
56Ga0318568_102833381
57Ga0318568_106669021
58Ga0310917_103939182
59Ga0306919_106750181
60Ga0306925_106324211
61Ga0306925_107820551
62Ga0306925_110853181
63Ga0318536_102677531
64Ga0318551_109489311
65Ga0318520_111143542
66Ga0306921_1000091023
67Ga0306921_117809572
68Ga0310916_103516171
69Ga0310913_101978681
70Ga0310913_107407652
71Ga0310913_109727232
72Ga0310910_103421612
73Ga0310910_106218962
74Ga0310910_115359642
75Ga0310909_101826361
76Ga0310909_106046502
77Ga0306926_120728751
78Ga0306926_121906202
79Ga0306926_129512781
80Ga0318530_100688951
81Ga0306922_102868651
82Ga0318563_103133291
83Ga0318563_105247722
84Ga0318569_106278552
85Ga0310911_104822971
86Ga0318559_100820582
87Ga0318545_100250261
88Ga0318556_102305051
89Ga0318558_104716331
90Ga0318570_105207771
91Ga0318575_103081592
92Ga0318533_105769792
93Ga0318513_106841601
94Ga0318524_103438601
95Ga0318518_103570231
96Ga0318540_105334541
97Ga0335078_121356491
98Ga0335081_103213463
99Ga0335074_105913532
100Ga0335076_100207276
101Ga0335076_103044801
102Ga0318519_107469261
103Ga0318519_108695582
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.87%    β-sheet: 0.00%    Coil/Unstructured: 47.13%
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Variant

510152025303540455055DLDGAMAQALSLLATVPGQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPTSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
49.5%50.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Bog Forest Soil
Freshwater Sediment
Tropical Forest Soil
Soil
Soil
Soil
Tropical Peatland
Termite Gut
3.9%3.9%61.2%20.4%4.9%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062389_10252868813300004092Bog Forest SoilMAWALNWLATASGQGKFSATRPDDAVQALKSASTPLLQNLTPEMQSAVRGDDPT*
Ga0123355_1174567813300009826Termite GutLERAQDLDAAMARALSVLATVPGQEKFLAPRLDDTLQALKSASTPLLQNLAPELRSAVRGDDPA*
Ga0126373_1139156213300010048Tropical Forest SoilALSVLAPEPGQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDDPA*
Ga0126373_1206484513300010048Tropical Forest SoilFLERAQDLDGAMARALSVLATAPGEEKFLAARLDDTLQSLKSASTPLLQNLTPELRSVVRGDDPA*
Ga0126373_1224123523300010048Tropical Forest SoilLSVLATVPGQEKLPAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPT*
Ga0123356_1230413613300010049Termite GutDARTSRNFLEQAQHLDGEMALALSVLATAPGQEKFLAARLDDTLQALKSASTPLLQDLTPELQSAIRGDNPT*
Ga0126378_1335152413300010361Tropical Forest SoilDAAMARALSVLATVPGQEKFPAAQLDDTLQALKSASTPLLQNLTPEMRSAVRRDDPA*
Ga0182036_1052419113300016270SoilRAQDLDGEMARALSLLATVPGQEEFLATQLDDTLQALKSASTPLLQNLTPELRSAVRGDNPA
Ga0182035_1161347413300016341SoilARRSRNFLERAQDLDGAMAQALSLLATVPGQENFLAARLDDTLQALKSASAPLLQNLTPELQSAVRGDNPA
Ga0182035_1163973113300016341SoilFLERAQDLDAAMARALSVLATAPGQEKSLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPA
Ga0182032_1017193813300016357SoilDLDGAMAQALSLLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0182032_1024358013300016357SoilMAQALSLLATVPGQEKFLAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPA
Ga0182032_1076099513300016357SoilLERAQDLDGAMAQALSLLATVPGQEKFLAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPT
Ga0182032_1142979313300016357SoilFFERAEDLDGEMARALSVLAMVPGQEKATAGRLDDTLRALKSASTPLLQNLTPEQLSAIRRDDPA
Ga0182040_1050924313300016387SoilNFLERAQDLDAAMARALSVLAPAPGQEKFLAARLDDTLQALKSASAPLLQNLTPELQSAVRGDNPA
Ga0182037_1016701923300016404SoilVLATAPGQEKFSEARLDDALQALKSASTPLLQNLTPEMRSAVRGDNPA
Ga0182039_1069109313300016422SoilRALSVLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPT
Ga0182039_1122398613300016422SoilIDARTSRNFLERAQDLDGAMAQALSVLATEPSQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDDPA
Ga0187807_125333813300017926Freshwater SedimentAIAPMVIDANPTRNFLEQAQHLETELALALSVLAAAPGQGNFPVARLNDAIQALKSASTPLLQNLTPEMRSVVRGEDPT
Ga0187824_1021002623300017927Freshwater SedimentFATAPGQEKFPPARLDDAVQALKSASTPLLQILTPEMRSAVRGDDPA
Ga0187780_1119542413300017973Tropical PeatlandRAQDLDAAMARALSLLATAPGQEKFLAARLDDTLQALKSASTPLLQHLTPELQSAVRGDHPA
Ga0187777_1076421823300017974Tropical PeatlandLERAQDLDAAMARALSLLATAPGQEKFLAAGLDDTLQALKSASTPLLQSLTPELRSAVRGDHPT
Ga0187782_1109219513300017975Tropical PeatlandALGWLATAPGQEKFPAARLNDAIQALKSASTPLLKNLSPEMRSAVRGDDPA
Ga0187804_1051320713300018006Freshwater SedimentAKTSRDFLEQAQHLDGDMALALNVLATASGREEFPAGRLDGAVQALKSASTPLLQNLTPEMQLAVRGDHPA
Ga0187805_1015553813300018007Freshwater SedimentLEQAQHLDGDMALALNVLATASGRKEFPAARLDGAVQALKSASTPLLQNLTPEMQSAVRGDHPA
Ga0318541_1061045713300031545SoilSRNFLERAQDLDGAMAQALSLLAPVPGQEKLPAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPT
Ga0318538_1070628513300031546SoilDLDGEMARALSVLATVPGQEKLPAARVDDTLQALKSASTPLLQNLTPELRSAVRGDNPT
Ga0318528_1025673213300031561SoilLSVLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPELQLGVRGDNPA
Ga0318515_1042457313300031572SoilSRNFLERAQDLDAALAQALSVLATAPGQEKLLSAQLDDTLQALKSASTPLLQNLTPEQRSAVRGDDPT
Ga0310915_1088344313300031573SoilRAQDLDAAMAQALNVLATVPGQEKFLAAQLDDALQALKSASTPLLQNLTPEMRSAVRRDDPA
Ga0318542_1009388913300031668SoilSRNFFERAEDLDGEMARALSVLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPT
Ga0318561_1001484343300031679SoilNFLERAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0318561_1059260613300031679SoilFERAEDLDGEMARALSLLATVPGQEKFPAARLDDTLQALKSASIPLLQNLTPELQSAVRGDNPA
Ga0318572_1004714233300031681SoilGAMARALSVLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPT
Ga0318496_1009621733300031713SoilAMARALSVLATAPGQEKFSEARLDDALQALKSASTPLLQNLTPELQLAVRGDNPA
Ga0318496_1036030823300031713SoilDLDGAMAQALSLLAPVPGQEKLPAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPT
Ga0318496_1045459713300031713SoilALSVLATAPGQEKLLSAQLDDTLQALKSASTPLLQNLTPEQRSAVRGDDPT
Ga0318493_1065995213300031723SoilDLDGAMAQALSLLATVPGQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPT
Ga0318502_1047505913300031747SoilDLDGAMAQALSLLAPVPGQEKLPAARLDDTLQALKSAAAPLLQNLTPELRSAVRGDNPT
Ga0318537_1029809323300031763SoilGEMARALSVLGTAPGQGKFPASRLDDAVKALDTASAPLLQNLGPEIRSAVRGDDPS
Ga0318537_1034365913300031763SoilATVPGQEKFLAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPA
Ga0318535_1012360033300031764SoilRALSVLGTAPGQGKFPASRLDDAVKALDTASAPLLQNLGPEIRSAVRGDDPS
Ga0318535_1039053313300031764SoilAMARALSLLATVPGQEEFLATQLDDTLQALKSASTPLLQNLTPELRSAVRGDNPA
Ga0318554_1004723733300031765SoilTSRNFFERAEDLDGEMARALSVLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPT
Ga0318554_1022306143300031765SoilFERAEYLDGEMARALSVLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPELQLTVRGDNPA
Ga0318509_1007828133300031768SoilPVLIDARTSRNFLERAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0318546_1001782913300031771SoilARTSRNFLERAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0318543_1024457013300031777SoilALSLLATAPGQEKFPAAQLDDTLQALKSASTPLLQNLTPEMRSAVRRDDPA
Ga0318543_1041780413300031777SoilAMAQALSLLAPVPGQEKLPAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPT
Ga0318508_101006313300031780SoilFLERAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGENPT
Ga0318552_1024690813300031782SoilVPGQEKFLAARLDDTLQALKSASAPLLQNLTPELQSAVRGDNPA
Ga0318529_1059872613300031792SoilPVLIDARRSRNFLERAQDLDGAMAQALSLLATVPGQEKFLAARLDDTLQALKSASAPLLQNLTPELQSAVRGDNPA
Ga0318529_1060711913300031792SoilQALSVLATAPGQEKLLSAQLDDTLQALKSASTPLLQNLTPEQRSAVRGDDPT
Ga0318548_1005753013300031793SoilIDARTSRNFLERAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0318497_1048873923300031805SoilLATVPGQEKFLAARLDDALQALKSSAAPLLQNLTPELRSAVRGDNST
Ga0318568_1028333813300031819SoilLERAQDLDGAMAQALSVLATEPSQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDDPA
Ga0318568_1066690213300031819SoilRAEDLDGEMARALSLLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPELQLAVRGDNPA
Ga0310917_1039391823300031833SoilDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0306919_1067501813300031879SoilILIDDKTTRNFLEQAQNLDGEMARALSVLGTAPGQGKFPASRLDDAVKALDTASAPLLQNLGPEIRSAVRGDDPS
Ga0306925_1063242113300031890SoilERAQDLDGAMARALSLLAPVPGQEKLPAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPT
Ga0306925_1078205513300031890SoilERAQDLDAAMARALSLLATAPGQEKFPAARLDDTLQALKSASTPLLQNLTPEMRSAVRRDDPA
Ga0306925_1108531813300031890SoilDAAMARALSLLATAPGQEKLLAARLDDTLQALKSASTPLLQSLTPELRSAVRGDNPT
Ga0318536_1026775313300031893SoilLDAAMARALSVLTTAPGQEQFLAAQLDDTLQALKSASTPLLQNLTPELRSAVRGDDPT
Ga0318551_1094893113300031896SoilALSVLTTAPGQEQFLAAQLDDTLQALKSASTPLLQNLTPELRSAVRGDDPT
Ga0318520_1111435423300031897SoilAQALSLLATVPCQEKLPAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPT
Ga0306921_10000910233300031912SoilFLERAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0306921_1178095723300031912SoilVLATEPSQEKFLAARLDDTLQALKSASTPLLQKLTPELQSAVRGDNPA
Ga0310916_1035161713300031942SoilTVPGQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPT
Ga0310913_1019786813300031945SoilLIDARTSRNFLERAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0310913_1074076523300031945SoilDGEMAQALSLLATVPGQEKLPAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPT
Ga0310913_1097272323300031945SoilEPSQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDDPA
Ga0310910_1034216123300031946SoilALSVLATAPGQEKSLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDDPA
Ga0310910_1062189623300031946SoilNFLERAEDLDGAMARALSLLATVPGQEEFLATQLDDTLQALKSASTPLLQNLTPELRSAVRGDNPA
Ga0310910_1153596423300031946SoilLSLLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPA
Ga0310909_1018263613300031947SoilRTSRNFLERAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0310909_1060465023300031947SoilDLDAAMARALSVLATAPGQEKSLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDDPA
Ga0306926_1207287513300031954SoilSLLATVPDQEKFPAAQLDDTLQALKSASTPLLQNLTPEMRSAVRRDDPA
Ga0306926_1219062023300031954SoilDSRTSRNFLERAQDLDAAMARALNVLATAPGQEKLLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDDPT
Ga0306926_1295127813300031954SoilRTSRNFLERAQDLDGAMAQALSLLATVPGQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDNPT
Ga0318530_1006889513300031959SoilRAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0306922_1028686513300032001SoilSRNFLERAQDLDGAMAQALSLLATVPGQENFLAARLDDTLQALKSASAPLLQNLTPELQSAVRGDNPA
Ga0318563_1031332913300032009SoilVLIDATTSRNFLERAQDLDAAMARALSVLATVPGQEKFLAARLDGTLQALKSAAAPLLQNLTPELRSAVRGDNPT
Ga0318563_1052477223300032009SoilLATVPGQEKFPAARLDDTLEALKSASTPLLQNLTPELRSAVRGDDPA
Ga0318569_1062785523300032010SoilDLDGAMARALSLLATVPGQEEFLATQLDDTLQALKSASTPLLQNLTPELRSAVRGDNPA
Ga0310911_1048229713300032035SoilIDARTSRNFLERAQDLDGEMARALSVLATVPGQEKFPAARLDDALQALKSASTPLLQNLTPELQSAVRGDNPT
Ga0318559_1008205823300032039SoilSRNFLERAQDLDGAMAQALSVLATEPSQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDDPA
Ga0318545_1002502613300032042SoilDLDGAMAQALSLLATVPGQEKFLAARLDDTLQALKSASTPLLQNLTPELQSAVRGDNPA
Ga0318556_1023050513300032043SoilAPGQEKLLSAQLDDTLQALKSASTPLLQNLTPEQRSAVRGDDPT
Ga0318558_1047163313300032044SoilPVLIDARTSRNFLERAQDLDGAMARALSLLAPVPGQEKLPAARLDDTLQALKSASAPLLQNLTPELRSAVRGDNPT
Ga0318570_1052077713300032054SoilSRNFLERAQDLDGAMARALSLLATVPGQEKFLAARLDDTLQALKSASTPLLQKLTPELQSAVRGDNPA
Ga0318575_1030815923300032055SoilRAQDLDGAMARALSLLAPVPGQEKLPAARLDDTLQALKSASAPLLQNLTPELRSAVRGDNPT
Ga0318533_1057697923300032059SoilVLIDARTSRNFLERAQDLDAAMARALSLLATAPGQEKFLAARLDDTMQALKSASTPLLQNLTPERQSAVRGDNPT
Ga0318513_1068416013300032065SoilDLDAAMARALSVLATVPGQEKFLAARLDDALQALKSSAAPLLQNLTPELRSAVRGDNST
Ga0318524_1034386013300032067SoilTTRNFLEQAQNLDGEMARALSVLGTAPGQGKFPASRLDDAVKALDTASAPLLQNLGPEIRSAVRGDDPS
Ga0318518_1035702313300032090SoilTAPGQEKLLAARLDDTLQALKSASTPLLQSLTPELRSAVRGDNPT
Ga0318540_1053345413300032094SoilVLATEPSQEKFLAARLDDTLQALKSASTPLLQNLTPELRSAVRGDDPA
Ga0335078_1213564913300032805SoilDGAMAVALNWFAAAPGQGKFPAARLDDALQALKSASTPLLKNLSPEMRSAVRGDNPT
Ga0335081_1032134633300032892SoilNWFAAAPGQGKFPAARLDDALQALKSASTPLLKNLSPEMRSAVRGDNPT
Ga0335074_1059135323300032895SoilSRKFLEQAQHLDGDMALALSVLATAPGQEKFPATRLDDAVQALKSASTPLLQNLSPEMRSAVRGDDPT
Ga0335076_1002072763300032955SoilGQMALALNWFATAPGQEKFPAARLDDAVQALKSASTPLLQILPPEMRSAVRGDDPA
Ga0335076_1030448013300032955SoilGQMALALNWFATAPGQEKFPAARLDDAVQALKSASTPLLQILTPEMRSAVRGDDPA
Ga0318519_1074692613300033290SoilSRNFLERAQYLDGEMARALSLLATVPAQEKFPAARLDDALQALKSTSTPLLQNLTPELQSAVRGDNPA
Ga0318519_1086955823300033290SoilMARALSVLATVPGQEKFPAARLDDTLQALKSASTPLLQNLTPELQLAVRGDNPA


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