Basic Information | |
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Family ID | F098376 |
Family Type | Metagenome |
Number of Sequences | 103 |
Average Sequence Length | 42 residues |
Representative Sequence | MAGIRTLATAILQKTNCQNKKAQLENFSDDFDNLIITLKTMNFL |
Number of Associated Samples | 31 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 19.42 % |
% of genes near scaffold ends (potentially truncated) | 47.57 % |
% of genes from short scaffolds (< 2000 bps) | 84.47 % |
Associated GOLD sequencing projects | 29 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.39 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (92.233 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand (89.320 % of family members) |
Environment Ontology (ENVO) | Unclassified (89.320 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (94.175 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 47.22% β-sheet: 0.00% Coil/Unstructured: 52.78% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.39 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Polar Desert Polar Desert Sand Watersheds Glacier Forefield Soil Rock Microbial Mat On Rocks Bio-Ooze Sugarcane Root And Bulk Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI24974J35850_10039072 | 3300002548 | Polar Desert | MAGIRTLATAILQKTNCQNKKAQLENFSDDFDNLIITLKTMNFL* |
JGI24974J35850_10234381 | 3300002548 | Polar Desert | MAEVRTLTTIILSKTNCQNKKAQLENFSDDFDSLIITLKMLNFL* |
rootL2_102544903 | 3300003322 | Sugarcane Root And Bulk Soil | MSGIRTLATIILEKTGSQNKKAQMEKFADDFDKLILTLKDLNFL* |
Ga0075023_1000356131 | 3300006041 | Watersheds | MAGLRTLATTILEKTNCQNKKAQLEDFADDFDNLIITLKGMNFL* |
Ga0137483_1070862 | 3300011244 | Glacier Forefield Soil | MAGLRTLATTILQKTNCQNKKEQLEDFADNFDNLILTLKAFNFL* |
Ga0136627_10302173 | 3300012042 | Polar Desert Sand | MAEVRTMATIILSETNCQNKKAQLENFSDNFDSLIVTLKLLNFL* |
Ga0136627_10667952 | 3300012042 | Polar Desert Sand | MAEIRTLATTILSKTNCQNKKAQLENFGDDFDSLIIALKRFKFL* |
Ga0136631_100724182 | 3300012043 | Polar Desert Sand | MAEVRTLTTIILSKTNCQNKKAQLENFSDDFDSLIITLKILNFL* |
Ga0136623_100666412 | 3300012045 | Polar Desert Sand | MAEVRTMATIILSETKCQNKKAQLENFSDNFDSLIVTLKMLNFL* |
Ga0136623_100908232 | 3300012045 | Polar Desert Sand | MAGLRTLATTILRKTKCQNKKEQLEDFADNFDTLIIALKTFNFL* |
Ga0136623_101446062 | 3300012045 | Polar Desert Sand | MAGIRTLAMSILQKTRCHNKKAQLEDFADDFDSLIITLKAMNFL* |
Ga0136634_100166155 | 3300012046 | Polar Desert Sand | AFKKKTVNRIMAGVRTLATALLQKTNCQNKKAQLENFSDDFDNLIIILKILNFL* |
Ga0136634_100344872 | 3300012046 | Polar Desert Sand | MAGIRTLATIILEKTRCQNKKAQLENFADDFDHLIVTLKVMNFL* |
Ga0136634_100362971 | 3300012046 | Polar Desert Sand | MAGLRTIATTLLQKTKCQNKKEQLENFADDFGNLIITLKS |
Ga0136634_100419802 | 3300012046 | Polar Desert Sand | MGGLRTLATAILEQTKCQNKKAQLENFSDDFDNLIITLKALNFL* |
Ga0136634_100555144 | 3300012046 | Polar Desert Sand | TAILEKTGCQNKKAQLDDFADNFDNLILTLQLFNFL* |
Ga0136634_100783661 | 3300012046 | Polar Desert Sand | MGGLRTLTTAILEKTGCQNKKAQLDDFADNFDNLILTLQLFNFL* |
Ga0136634_100784401 | 3300012046 | Polar Desert Sand | MAGVRTLAIAILDQTNCQNKKAQLENFSDDFDSLIITLKKFNFL* |
Ga0136634_100896235 | 3300012046 | Polar Desert Sand | TIILSKTNCQNKKAQLENFSDDFDSLIITLKMLNFL* |
Ga0136634_101181351 | 3300012046 | Polar Desert Sand | MAGLRTLATTILRKTKCQNKKEQLEDFADNFDNLI |
Ga0136634_101456611 | 3300012046 | Polar Desert Sand | TTVLSEIKCQNKKAQLENFSDDFDSLIVTLKMLNFL* |
Ga0136634_101662221 | 3300012046 | Polar Desert Sand | TILEKTECQNKKAQLEDFADDFDNLIITLKLINFL* |
Ga0136634_102522722 | 3300012046 | Polar Desert Sand | MAGVRTLAIAILSQTNCQNKKAQLENFSDDFDTLIITLKKLDFL* |
Ga0136634_102613772 | 3300012046 | Polar Desert Sand | ILEKTGCQNKKAQLENFADDFDKLIITLKVMNFL* |
Ga0136634_103005522 | 3300012046 | Polar Desert Sand | TIILQKTNCQNKKAQLENFSDDFDSLIVTLKSLNFL* |
Ga0136634_103400612 | 3300012046 | Polar Desert Sand | MAGIRSLATIILEKTKCQNKKAQLEEFADDFDTLIITLKEMNFL* |
Ga0136634_103400613 | 3300012046 | Polar Desert Sand | ILQKTNCQNKKAQLENFSDDFDGLIVTLKSLDFL* |
Ga0136634_103612321 | 3300012046 | Polar Desert Sand | FEIACSKKIKCGQKKTVNRLMAGVRTLAIAILDQTNWQNKKAQSENFSDDFDSLIITLKKFNFL* |
Ga0136634_104422722 | 3300012046 | Polar Desert Sand | ILQKTNCQNKKEQLEDFADNFDNLILTLKTFNFL* |
Ga0136634_104865941 | 3300012046 | Polar Desert Sand | MAEVRTLATTILSQTNCQNKKAQLENFGDNFGNLIITLKSLNF |
Ga0136621_11346002 | 3300012092 | Polar Desert Sand | MAGIRTLATTILQKTGCRNKKAQLENFADDFDNLIITLKVMNFL* |
Ga0136632_100740732 | 3300012093 | Polar Desert Sand | MASIRTLATVILHKTNCQNKKAQLENFSDDFDNLIITLKNLNFL* |
Ga0136632_100994811 | 3300012093 | Polar Desert Sand | MAGLRTLATTILQKTNWQNKKEQLEDFADNFDTLIIT |
Ga0136638_100036934 | 3300012094 | Polar Desert Sand | MAEVRTLATAILNKTNCQNKKAQLENFSDDFDSLIITLKNLNFL* |
Ga0136638_100095341 | 3300012094 | Polar Desert Sand | MAGVRTLAIAILDQTNWQNKKAQSENFSDDFDSLTITLKKFNFL* |
Ga0136638_100368063 | 3300012094 | Polar Desert Sand | TIILEKTKCQNKKAQLENFADDFDNLIITLKVMNFL* |
Ga0136638_100454181 | 3300012094 | Polar Desert Sand | MAGIRTLATIILEKTKCQNKKAQLENFADDFDNLIITLKVMNFL* |
Ga0136638_100505772 | 3300012094 | Polar Desert Sand | MAEIRTLATTILSNTNCQNKKAQLENFSDDFDSLIIKLKVLNFL* |
Ga0136638_100921123 | 3300012094 | Polar Desert Sand | MAEVRTLATTILNKTNCQNKKAQLENFSDDFDGLII |
Ga0136638_101126181 | 3300012094 | Polar Desert Sand | MASIRTLATVILHKTNCQNKKAQLENFSDDFDNLIIT |
Ga0136638_102834941 | 3300012094 | Polar Desert Sand | ATTILRKTKCQNKKEQLEDFADNFDNLIIALKTFNFL* |
Ga0136619_100633691 | 3300012185 | Polar Desert Sand | MAGIRTLATTILQKTGCRNKKAQLENFADDFDNLIITLKGLN |
Ga0136619_102622792 | 3300012185 | Polar Desert Sand | MILEKTKCQNKKAQLEDFADDFDNLIITLKGLNFL* |
Ga0136620_101140291 | 3300012186 | Polar Desert Sand | TVILHKTNCQNKKAQLENFSDDFDNLIITLKNLNFL* |
Ga0136618_100188011 | 3300012188 | Polar Desert Sand | TIILQKINCQNKKAQLENFGDDFDSLIVTLKSLNFL* |
Ga0136618_100597082 | 3300012188 | Polar Desert Sand | MAEVRTLAIAILNQTNCQNKKAQLENFSDDFDSLIITLKKLNFL* |
Ga0136618_101082562 | 3300012188 | Polar Desert Sand | MAEVRTLTTTILSKTNGQNKKAQLENFSDDFDGLIITLKMLNFL* |
Ga0136618_101924221 | 3300012188 | Polar Desert Sand | MAGLRTIATTILRKTKCQNKKEQLEDFADNFDNLIIALKTFNF |
Ga0136637_10006219 | 3300012526 | Polar Desert Sand | MAGLRTIATTILRKTKCQNKKEQLEDFADNFDTLILALKTFNFL* |
Ga0136630_11578222 | 3300012529 | Polar Desert Sand | MAGIRTLAMSILQKTRCHNKKAQSEDFADDFDSLIITLKAMNFL* |
Ga0136630_11752111 | 3300012529 | Polar Desert Sand | MAILQKTKCQNKKAQLENFSDDFDNLIITLKVLNFL* |
Ga0136630_13384902 | 3300012529 | Polar Desert Sand | MGEIRTLAIAILQKTNCQNKKAQLENFSDDFDNLIVTLKLLNFL* |
Ga0136640_100418761 | 3300012531 | Polar Desert Sand | TTILRKTKCQNKKEQLEDFADNFDTLIIALKTFNFL* |
Ga0136640_104088901 | 3300012531 | Polar Desert Sand | MAEVRTMATIILSETNCQNKKAQLENFSDNFDSLIVALKLLNF |
Ga0136616_100829392 | 3300012679 | Polar Desert Sand | MAEVRTLATAILNKTNCQNKKAQLENFSDDFDGLIITLKNLNFL* |
Ga0136616_104713931 | 3300012679 | Polar Desert Sand | MAGLRTIATTILRKTKCQNKKEQLEDFADNFDNLIIALKTFN |
Ga0136616_105529973 | 3300012679 | Polar Desert Sand | RTLATTILQKTNCQNKKEQLENFADNFDNLIVTLKTFNFL* |
Ga0136616_105831401 | 3300012679 | Polar Desert Sand | ILRKTKCQNKKEQLEDFADNFDNLIIALKTFNFL* |
Ga0136612_101506421 | 3300012680 | Polar Desert Sand | MAEIRTLATTILSNTNCQNKKAQLENFSDDFDSLIITLKILNFL* |
Ga0136613_100675111 | 3300012681 | Polar Desert Sand | TTILQKTNCQNKKEQLEDFADNFDNLIITLKTFNFL* |
Ga0136613_100859783 | 3300012681 | Polar Desert Sand | MAGLRTLACEILQKTKCQNKKAQLENFADNFDDLIITLKILNFL* |
Ga0136613_101002932 | 3300012681 | Polar Desert Sand | TILQKTNCQNKKEQLEDFADNFDNLIITLKTFNFL* |
Ga0136613_102463651 | 3300012681 | Polar Desert Sand | QQTMAGLRTLATTILRKTKCKNKKEQLEDFADNFDTLILALKTFNFL* |
Ga0136613_104810301 | 3300012681 | Polar Desert Sand | MAEVRTMATIILSETKCQNKKAQLENFSDNFDSLIVT |
Ga0136613_107933301 | 3300012681 | Polar Desert Sand | TILRKTKCQNKKEQLEDFADNFDTLILALKTFNFL* |
Ga0136611_101410053 | 3300012682 | Polar Desert Sand | MAGIRTLATTILQNTGCHNKRAQLEDFADDFDNLIITLKVMNFL* |
Ga0136611_101949293 | 3300012682 | Polar Desert Sand | MGGLRTLAAIILQKTNCQNKKEQLEDFADNFDNLIITLK |
Ga0136611_103095431 | 3300012682 | Polar Desert Sand | KKKLQQTMAGLRTIATTLLHKTRCQNKKAQLEEFTDNFDD* |
Ga0136611_108508321 | 3300012682 | Polar Desert Sand | MGEIRTMATIILQKINCRNKKAQLENFGDDFDSLIVTLKSLNFL* |
Ga0136614_100460384 | 3300012684 | Polar Desert Sand | MAGVRTLTTIILSQTNCQNKKAQLENFSDDFGSLIVTLKILNFL* |
Ga0136614_105657551 | 3300012684 | Polar Desert Sand | ILQKTNCQNKKEQLEDFADNFDTLIITLKTFNFL* |
Ga0136614_107676091 | 3300012684 | Polar Desert Sand | IMAEVRTLAIAILNKTNCQYKKAQLENFSDDFDGLIITLKNLNFL* |
Ga0136639_103171121 | 3300013097 | Polar Desert Sand | MAGLRTLATTILQKTNCQNKKEQLEDFADNFDNLIITLKT |
Ga0180121_100138042 | 3300017695 | Polar Desert Sand | MAGIRTLATAILQKTPCQNKKAQLENFSDDFDNLIITLKVLNFL |
Ga0180121_100608062 | 3300017695 | Polar Desert Sand | MAGIRTLVTTILKKTRCQNKKAQLEDFADDYDSLIITLKLMNFL |
Ga0180121_101134462 | 3300017695 | Polar Desert Sand | MAGVRTLAIAILNQTNCQNKKAQLENFSDDFDSLIITLKKFNFL |
Ga0180121_102808052 | 3300017695 | Polar Desert Sand | MGGLRTLTTAILEKTECQNKKAQLDDFADNFDNLILTLKLFNFL |
Ga0180121_103290112 | 3300017695 | Polar Desert Sand | MGGLRTLTTAILQKTGCQNRKAQIDDFADSFDYLILTLKTFNFL |
Ga0180121_103426292 | 3300017695 | Polar Desert Sand | MGEIRTLATIILQKTKCQNKKAQLENFGDDFDGLIVTLKSLNFL |
Ga0183260_100543342 | 3300017787 | Polar Desert Sand | MAEIRTLATTILSNTNCQNKKAQLENFSDDFDSLIITLKILNFL |
Ga0183260_100607263 | 3300017787 | Polar Desert Sand | MAGIRTVAAAILNQTNCPNKKAQLENFSDDFDELIVTLKLLNFL |
Ga0183260_100886582 | 3300017787 | Polar Desert Sand | MAGIRTLATIILEKTKCQNKKAQLENFADDFDNLIITLKVMNFL |
Ga0183260_101644543 | 3300017787 | Polar Desert Sand | MAEVRTLAIAILNQTNCQNKKAQLENFSDDFDSLIITLKKLNFL |
Ga0183260_103596032 | 3300017787 | Polar Desert Sand | MGEIRTLATIILQKINCLNKKAQLENFGDDFDSLIITLKSLNFL |
Ga0183260_105119653 | 3300017787 | Polar Desert Sand | VATIILSKTNWQNKKAQLENFSDDFDSLIVTLKILNFL |
Ga0183260_109098441 | 3300017787 | Polar Desert Sand | TIILSKTNCQNKKAQLENFGDDFDSLIVTLKFLNFL |
Ga0136617_100249614 | 3300017789 | Polar Desert Sand | MAGLRTLATTILQKTNCQNKKEQLEDFADNFDNLIITLKTFNFL |
Ga0136617_101254602 | 3300017789 | Polar Desert Sand | MAGVRTLAIAILSQTSCQNKKAQLENFSDDFDTLIITLDII |
Ga0136617_102083873 | 3300017789 | Polar Desert Sand | MGGLRTLTTAILEKTKCQNKKAQLDNFADNFDNLILTLKLFNFL |
Ga0136617_102251802 | 3300017789 | Polar Desert Sand | MAGVRTLAIAILDQTNWQNKKAQSENFSDDFDSLIITLKKFNFL |
Ga0136617_102380263 | 3300017789 | Polar Desert Sand | MAGIRTLATTILEKTECQNKKAQLEDFADDFDNLIITLKLINFL |
Ga0136617_102726102 | 3300017789 | Polar Desert Sand | MAEVRTLTTTILSKTNGQNKKAQLENFSDDFDGLIITLKMLNFL |
Ga0136617_102816103 | 3300017789 | Polar Desert Sand | MAAIRRLATAILEKTNCQNKKAQLEDFSDYFDNLIITLKIMNFL |
Ga0136617_103364884 | 3300017789 | Polar Desert Sand | MAEIRTLATIILRKTNCQNKKAQLENFGDDFDSLIVTLKVLNFL |
Ga0136617_106311202 | 3300017789 | Polar Desert Sand | TIILRKTNCQNKKAQLENFGDDFDSLIVTLKVLNFL |
Ga0136617_107934791 | 3300017789 | Polar Desert Sand | MAGLRTVATTILQKTNCQNKKEQLEDFADNFDNLIITLKT |
Ga0136617_111342641 | 3300017789 | Polar Desert Sand | MAGLRTIATTILRKTKCQNKKEQLEDFADNFDNLI |
Ga0187894_101045371 | 3300019360 | Microbial Mat On Rocks | IRTLATTILNKTDCQNKKAQLEKFSDNFDDLIMKLKLLNFLRVSERLCK |
Ga0187892_1000557518 | 3300019458 | Bio-Ooze | TTILNKTDCQNKKAQLEKFSDNFDDLIMKLKLLNFL |
Ga0208736_10095992 | 3300027618 | Polar Desert | MAGIRTLATAILQKTNCQNKKAQLENFSDDFDNLIITLKTMNFL |
Ga0208736_10831301 | 3300027618 | Polar Desert | MAGIRTLATTILEKTRCQNKKAQLENFADDFDNLIV |
Ga0209583_102048362 | 3300027910 | Watersheds | MAGLRTLATTILEKTNCQNKKAQLEDFADDFDNLIITLKGMNFL |
Ga0272427_10658781 | 3300031454 | Rock | MAEVRTIATIVISTTEGQNKKAQLENFSDNFDSLIVTLK |
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