NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F098376

Metagenome Family F098376

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098376
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 42 residues
Representative Sequence MAGIRTLATAILQKTNCQNKKAQLENFSDDFDNLIITLKTMNFL
Number of Associated Samples 31
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 19.42 %
% of genes near scaffold ends (potentially truncated) 47.57 %
% of genes from short scaffolds (< 2000 bps) 84.47 %
Associated GOLD sequencing projects 29
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (92.233 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand
(89.320 % of family members)
Environment Ontology (ENVO) Unclassified
(89.320 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(94.175 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72
1JGI24974J35850_10039072
2JGI24974J35850_10234381
3rootL2_102544903
4Ga0075023_1000356131
5Ga0137483_1070862
6Ga0136627_10302173
7Ga0136627_10667952
8Ga0136631_100724182
9Ga0136623_100666412
10Ga0136623_100908232
11Ga0136623_101446062
12Ga0136634_100166155
13Ga0136634_100344872
14Ga0136634_100362971
15Ga0136634_100419802
16Ga0136634_100555144
17Ga0136634_100783661
18Ga0136634_100784401
19Ga0136634_100896235
20Ga0136634_101181351
21Ga0136634_101456611
22Ga0136634_101662221
23Ga0136634_102522722
24Ga0136634_102613772
25Ga0136634_103005522
26Ga0136634_103400612
27Ga0136634_103400613
28Ga0136634_103612321
29Ga0136634_104422722
30Ga0136634_104865941
31Ga0136621_11346002
32Ga0136632_100740732
33Ga0136632_100994811
34Ga0136638_100036934
35Ga0136638_100095341
36Ga0136638_100368063
37Ga0136638_100454181
38Ga0136638_100505772
39Ga0136638_100921123
40Ga0136638_101126181
41Ga0136638_102834941
42Ga0136619_100633691
43Ga0136619_102622792
44Ga0136620_101140291
45Ga0136618_100188011
46Ga0136618_100597082
47Ga0136618_101082562
48Ga0136618_101924221
49Ga0136637_10006219
50Ga0136630_11578222
51Ga0136630_11752111
52Ga0136630_13384902
53Ga0136640_100418761
54Ga0136640_104088901
55Ga0136616_100829392
56Ga0136616_104713931
57Ga0136616_105529973
58Ga0136616_105831401
59Ga0136612_101506421
60Ga0136613_100675111
61Ga0136613_100859783
62Ga0136613_101002932
63Ga0136613_102463651
64Ga0136613_104810301
65Ga0136613_107933301
66Ga0136611_101410053
67Ga0136611_101949293
68Ga0136611_103095431
69Ga0136611_108508321
70Ga0136614_100460384
71Ga0136614_105657551
72Ga0136614_107676091
73Ga0136639_103171121
74Ga0180121_100138042
75Ga0180121_100608062
76Ga0180121_101134462
77Ga0180121_102808052
78Ga0180121_103290112
79Ga0180121_103426292
80Ga0183260_100543342
81Ga0183260_100607263
82Ga0183260_100886582
83Ga0183260_101644543
84Ga0183260_103596032
85Ga0183260_105119653
86Ga0183260_109098441
87Ga0136617_100249614
88Ga0136617_101254602
89Ga0136617_102083873
90Ga0136617_102251802
91Ga0136617_102380263
92Ga0136617_102726102
93Ga0136617_102816103
94Ga0136617_103364884
95Ga0136617_106311202
96Ga0136617_107934791
97Ga0136617_111342641
98Ga0187894_101045371
99Ga0187892_1000557518
100Ga0208736_10095992
101Ga0208736_10831301
102Ga0209583_102048362
103Ga0272427_10658781
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 47.22%    β-sheet: 0.00%    Coil/Unstructured: 52.78%
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Variant

510152025303540MAGIRTLATAILQKTNCQNKKAQLENFSDDFDNLIITLKTMNFLSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
92.2%7.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Polar Desert
Polar Desert Sand
Watersheds
Glacier Forefield Soil
Rock
Microbial Mat On Rocks
Bio-Ooze
Sugarcane Root And Bulk Soil
3.9%89.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24974J35850_100390723300002548Polar DesertMAGIRTLATAILQKTNCQNKKAQLENFSDDFDNLIITLKTMNFL*
JGI24974J35850_102343813300002548Polar DesertMAEVRTLTTIILSKTNCQNKKAQLENFSDDFDSLIITLKMLNFL*
rootL2_1025449033300003322Sugarcane Root And Bulk SoilMSGIRTLATIILEKTGSQNKKAQMEKFADDFDKLILTLKDLNFL*
Ga0075023_10003561313300006041WatershedsMAGLRTLATTILEKTNCQNKKAQLEDFADDFDNLIITLKGMNFL*
Ga0137483_10708623300011244Glacier Forefield SoilMAGLRTLATTILQKTNCQNKKEQLEDFADNFDNLILTLKAFNFL*
Ga0136627_103021733300012042Polar Desert SandMAEVRTMATIILSETNCQNKKAQLENFSDNFDSLIVTLKLLNFL*
Ga0136627_106679523300012042Polar Desert SandMAEIRTLATTILSKTNCQNKKAQLENFGDDFDSLIIALKRFKFL*
Ga0136631_1007241823300012043Polar Desert SandMAEVRTLTTIILSKTNCQNKKAQLENFSDDFDSLIITLKILNFL*
Ga0136623_1006664123300012045Polar Desert SandMAEVRTMATIILSETKCQNKKAQLENFSDNFDSLIVTLKMLNFL*
Ga0136623_1009082323300012045Polar Desert SandMAGLRTLATTILRKTKCQNKKEQLEDFADNFDTLIIALKTFNFL*
Ga0136623_1014460623300012045Polar Desert SandMAGIRTLAMSILQKTRCHNKKAQLEDFADDFDSLIITLKAMNFL*
Ga0136634_1001661553300012046Polar Desert SandAFKKKTVNRIMAGVRTLATALLQKTNCQNKKAQLENFSDDFDNLIIILKILNFL*
Ga0136634_1003448723300012046Polar Desert SandMAGIRTLATIILEKTRCQNKKAQLENFADDFDHLIVTLKVMNFL*
Ga0136634_1003629713300012046Polar Desert SandMAGLRTIATTLLQKTKCQNKKEQLENFADDFGNLIITLKS
Ga0136634_1004198023300012046Polar Desert SandMGGLRTLATAILEQTKCQNKKAQLENFSDDFDNLIITLKALNFL*
Ga0136634_1005551443300012046Polar Desert SandTAILEKTGCQNKKAQLDDFADNFDNLILTLQLFNFL*
Ga0136634_1007836613300012046Polar Desert SandMGGLRTLTTAILEKTGCQNKKAQLDDFADNFDNLILTLQLFNFL*
Ga0136634_1007844013300012046Polar Desert SandMAGVRTLAIAILDQTNCQNKKAQLENFSDDFDSLIITLKKFNFL*
Ga0136634_1008962353300012046Polar Desert SandTIILSKTNCQNKKAQLENFSDDFDSLIITLKMLNFL*
Ga0136634_1011813513300012046Polar Desert SandMAGLRTLATTILRKTKCQNKKEQLEDFADNFDNLI
Ga0136634_1014566113300012046Polar Desert SandTTVLSEIKCQNKKAQLENFSDDFDSLIVTLKMLNFL*
Ga0136634_1016622213300012046Polar Desert SandTILEKTECQNKKAQLEDFADDFDNLIITLKLINFL*
Ga0136634_1025227223300012046Polar Desert SandMAGVRTLAIAILSQTNCQNKKAQLENFSDDFDTLIITLKKLDFL*
Ga0136634_1026137723300012046Polar Desert SandILEKTGCQNKKAQLENFADDFDKLIITLKVMNFL*
Ga0136634_1030055223300012046Polar Desert SandTIILQKTNCQNKKAQLENFSDDFDSLIVTLKSLNFL*
Ga0136634_1034006123300012046Polar Desert SandMAGIRSLATIILEKTKCQNKKAQLEEFADDFDTLIITLKEMNFL*
Ga0136634_1034006133300012046Polar Desert SandILQKTNCQNKKAQLENFSDDFDGLIVTLKSLDFL*
Ga0136634_1036123213300012046Polar Desert SandFEIACSKKIKCGQKKTVNRLMAGVRTLAIAILDQTNWQNKKAQSENFSDDFDSLIITLKKFNFL*
Ga0136634_1044227223300012046Polar Desert SandILQKTNCQNKKEQLEDFADNFDNLILTLKTFNFL*
Ga0136634_1048659413300012046Polar Desert SandMAEVRTLATTILSQTNCQNKKAQLENFGDNFGNLIITLKSLNF
Ga0136621_113460023300012092Polar Desert SandMAGIRTLATTILQKTGCRNKKAQLENFADDFDNLIITLKVMNFL*
Ga0136632_1007407323300012093Polar Desert SandMASIRTLATVILHKTNCQNKKAQLENFSDDFDNLIITLKNLNFL*
Ga0136632_1009948113300012093Polar Desert SandMAGLRTLATTILQKTNWQNKKEQLEDFADNFDTLIIT
Ga0136638_1000369343300012094Polar Desert SandMAEVRTLATAILNKTNCQNKKAQLENFSDDFDSLIITLKNLNFL*
Ga0136638_1000953413300012094Polar Desert SandMAGVRTLAIAILDQTNWQNKKAQSENFSDDFDSLTITLKKFNFL*
Ga0136638_1003680633300012094Polar Desert SandTIILEKTKCQNKKAQLENFADDFDNLIITLKVMNFL*
Ga0136638_1004541813300012094Polar Desert SandMAGIRTLATIILEKTKCQNKKAQLENFADDFDNLIITLKVMNFL*
Ga0136638_1005057723300012094Polar Desert SandMAEIRTLATTILSNTNCQNKKAQLENFSDDFDSLIIKLKVLNFL*
Ga0136638_1009211233300012094Polar Desert SandMAEVRTLATTILNKTNCQNKKAQLENFSDDFDGLII
Ga0136638_1011261813300012094Polar Desert SandMASIRTLATVILHKTNCQNKKAQLENFSDDFDNLIIT
Ga0136638_1028349413300012094Polar Desert SandATTILRKTKCQNKKEQLEDFADNFDNLIIALKTFNFL*
Ga0136619_1006336913300012185Polar Desert SandMAGIRTLATTILQKTGCRNKKAQLENFADDFDNLIITLKGLN
Ga0136619_1026227923300012185Polar Desert SandMILEKTKCQNKKAQLEDFADDFDNLIITLKGLNFL*
Ga0136620_1011402913300012186Polar Desert SandTVILHKTNCQNKKAQLENFSDDFDNLIITLKNLNFL*
Ga0136618_1001880113300012188Polar Desert SandTIILQKINCQNKKAQLENFGDDFDSLIVTLKSLNFL*
Ga0136618_1005970823300012188Polar Desert SandMAEVRTLAIAILNQTNCQNKKAQLENFSDDFDSLIITLKKLNFL*
Ga0136618_1010825623300012188Polar Desert SandMAEVRTLTTTILSKTNGQNKKAQLENFSDDFDGLIITLKMLNFL*
Ga0136618_1019242213300012188Polar Desert SandMAGLRTIATTILRKTKCQNKKEQLEDFADNFDNLIIALKTFNF
Ga0136637_100062193300012526Polar Desert SandMAGLRTIATTILRKTKCQNKKEQLEDFADNFDTLILALKTFNFL*
Ga0136630_115782223300012529Polar Desert SandMAGIRTLAMSILQKTRCHNKKAQSEDFADDFDSLIITLKAMNFL*
Ga0136630_117521113300012529Polar Desert SandMAILQKTKCQNKKAQLENFSDDFDNLIITLKVLNFL*
Ga0136630_133849023300012529Polar Desert SandMGEIRTLAIAILQKTNCQNKKAQLENFSDDFDNLIVTLKLLNFL*
Ga0136640_1004187613300012531Polar Desert SandTTILRKTKCQNKKEQLEDFADNFDTLIIALKTFNFL*
Ga0136640_1040889013300012531Polar Desert SandMAEVRTMATIILSETNCQNKKAQLENFSDNFDSLIVALKLLNF
Ga0136616_1008293923300012679Polar Desert SandMAEVRTLATAILNKTNCQNKKAQLENFSDDFDGLIITLKNLNFL*
Ga0136616_1047139313300012679Polar Desert SandMAGLRTIATTILRKTKCQNKKEQLEDFADNFDNLIIALKTFN
Ga0136616_1055299733300012679Polar Desert SandRTLATTILQKTNCQNKKEQLENFADNFDNLIVTLKTFNFL*
Ga0136616_1058314013300012679Polar Desert SandILRKTKCQNKKEQLEDFADNFDNLIIALKTFNFL*
Ga0136612_1015064213300012680Polar Desert SandMAEIRTLATTILSNTNCQNKKAQLENFSDDFDSLIITLKILNFL*
Ga0136613_1006751113300012681Polar Desert SandTTILQKTNCQNKKEQLEDFADNFDNLIITLKTFNFL*
Ga0136613_1008597833300012681Polar Desert SandMAGLRTLACEILQKTKCQNKKAQLENFADNFDDLIITLKILNFL*
Ga0136613_1010029323300012681Polar Desert SandTILQKTNCQNKKEQLEDFADNFDNLIITLKTFNFL*
Ga0136613_1024636513300012681Polar Desert SandQQTMAGLRTLATTILRKTKCKNKKEQLEDFADNFDTLILALKTFNFL*
Ga0136613_1048103013300012681Polar Desert SandMAEVRTMATIILSETKCQNKKAQLENFSDNFDSLIVT
Ga0136613_1079333013300012681Polar Desert SandTILRKTKCQNKKEQLEDFADNFDTLILALKTFNFL*
Ga0136611_1014100533300012682Polar Desert SandMAGIRTLATTILQNTGCHNKRAQLEDFADDFDNLIITLKVMNFL*
Ga0136611_1019492933300012682Polar Desert SandMGGLRTLAAIILQKTNCQNKKEQLEDFADNFDNLIITLK
Ga0136611_1030954313300012682Polar Desert SandKKKLQQTMAGLRTIATTLLHKTRCQNKKAQLEEFTDNFDD*
Ga0136611_1085083213300012682Polar Desert SandMGEIRTMATIILQKINCRNKKAQLENFGDDFDSLIVTLKSLNFL*
Ga0136614_1004603843300012684Polar Desert SandMAGVRTLTTIILSQTNCQNKKAQLENFSDDFGSLIVTLKILNFL*
Ga0136614_1056575513300012684Polar Desert SandILQKTNCQNKKEQLEDFADNFDTLIITLKTFNFL*
Ga0136614_1076760913300012684Polar Desert SandIMAEVRTLAIAILNKTNCQYKKAQLENFSDDFDGLIITLKNLNFL*
Ga0136639_1031711213300013097Polar Desert SandMAGLRTLATTILQKTNCQNKKEQLEDFADNFDNLIITLKT
Ga0180121_1001380423300017695Polar Desert SandMAGIRTLATAILQKTPCQNKKAQLENFSDDFDNLIITLKVLNFL
Ga0180121_1006080623300017695Polar Desert SandMAGIRTLVTTILKKTRCQNKKAQLEDFADDYDSLIITLKLMNFL
Ga0180121_1011344623300017695Polar Desert SandMAGVRTLAIAILNQTNCQNKKAQLENFSDDFDSLIITLKKFNFL
Ga0180121_1028080523300017695Polar Desert SandMGGLRTLTTAILEKTECQNKKAQLDDFADNFDNLILTLKLFNFL
Ga0180121_1032901123300017695Polar Desert SandMGGLRTLTTAILQKTGCQNRKAQIDDFADSFDYLILTLKTFNFL
Ga0180121_1034262923300017695Polar Desert SandMGEIRTLATIILQKTKCQNKKAQLENFGDDFDGLIVTLKSLNFL
Ga0183260_1005433423300017787Polar Desert SandMAEIRTLATTILSNTNCQNKKAQLENFSDDFDSLIITLKILNFL
Ga0183260_1006072633300017787Polar Desert SandMAGIRTVAAAILNQTNCPNKKAQLENFSDDFDELIVTLKLLNFL
Ga0183260_1008865823300017787Polar Desert SandMAGIRTLATIILEKTKCQNKKAQLENFADDFDNLIITLKVMNFL
Ga0183260_1016445433300017787Polar Desert SandMAEVRTLAIAILNQTNCQNKKAQLENFSDDFDSLIITLKKLNFL
Ga0183260_1035960323300017787Polar Desert SandMGEIRTLATIILQKINCLNKKAQLENFGDDFDSLIITLKSLNFL
Ga0183260_1051196533300017787Polar Desert SandVATIILSKTNWQNKKAQLENFSDDFDSLIVTLKILNFL
Ga0183260_1090984413300017787Polar Desert SandTIILSKTNCQNKKAQLENFGDDFDSLIVTLKFLNFL
Ga0136617_1002496143300017789Polar Desert SandMAGLRTLATTILQKTNCQNKKEQLEDFADNFDNLIITLKTFNFL
Ga0136617_1012546023300017789Polar Desert SandMAGVRTLAIAILSQTSCQNKKAQLENFSDDFDTLIITLDII
Ga0136617_1020838733300017789Polar Desert SandMGGLRTLTTAILEKTKCQNKKAQLDNFADNFDNLILTLKLFNFL
Ga0136617_1022518023300017789Polar Desert SandMAGVRTLAIAILDQTNWQNKKAQSENFSDDFDSLIITLKKFNFL
Ga0136617_1023802633300017789Polar Desert SandMAGIRTLATTILEKTECQNKKAQLEDFADDFDNLIITLKLINFL
Ga0136617_1027261023300017789Polar Desert SandMAEVRTLTTTILSKTNGQNKKAQLENFSDDFDGLIITLKMLNFL
Ga0136617_1028161033300017789Polar Desert SandMAAIRRLATAILEKTNCQNKKAQLEDFSDYFDNLIITLKIMNFL
Ga0136617_1033648843300017789Polar Desert SandMAEIRTLATIILRKTNCQNKKAQLENFGDDFDSLIVTLKVLNFL
Ga0136617_1063112023300017789Polar Desert SandTIILRKTNCQNKKAQLENFGDDFDSLIVTLKVLNFL
Ga0136617_1079347913300017789Polar Desert SandMAGLRTVATTILQKTNCQNKKEQLEDFADNFDNLIITLKT
Ga0136617_1113426413300017789Polar Desert SandMAGLRTIATTILRKTKCQNKKEQLEDFADNFDNLI
Ga0187894_1010453713300019360Microbial Mat On RocksIRTLATTILNKTDCQNKKAQLEKFSDNFDDLIMKLKLLNFLRVSERLCK
Ga0187892_10005575183300019458Bio-OozeTTILNKTDCQNKKAQLEKFSDNFDDLIMKLKLLNFL
Ga0208736_100959923300027618Polar DesertMAGIRTLATAILQKTNCQNKKAQLENFSDDFDNLIITLKTMNFL
Ga0208736_108313013300027618Polar DesertMAGIRTLATTILEKTRCQNKKAQLENFADDFDNLIV
Ga0209583_1020483623300027910WatershedsMAGLRTLATTILEKTNCQNKKAQLEDFADDFDNLIITLKGMNFL
Ga0272427_106587813300031454RockMAEVRTIATIVISTTEGQNKKAQLENFSDNFDSLIVTLK


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