Metagenome Family F098312

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098312
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	104 residues
Representative Sequence	MDYVGALLGGFALLGLTVDGLLRKAEKKARKFPWCRTCGMNMLTAGLPKFMPGEVVNHLDKYGLPTVVASRFVCPKGHYQLWFVPRFGNTEKAFFLREEL
Number of Associated Samples	72
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	64.08 %
% of genes near scaffold ends (potentially truncated)	35.58 %
% of genes from short scaffolds (< 2000 bps)	84.62 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.962 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (18.269 % of family members)
Environment Ontology (ENVO)	Unclassified (25.962 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 27.34% β-sheet: 16.41% Coil/Unstructured: 56.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF11171	DUF2958	23.08
PF12696	TraG-D_C	2.88
PF12728	HTH_17	2.88
PF14659	Phage_int_SAM_3	0.96
PF01807	zf-CHC2	0.96
PF01551	Peptidase_M23	0.96
PF00136	DNA_pol_B	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	0.96
COG0417	DNA polymerase B elongation subunit	Replication, recombination and repair [L]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.96 %
Unclassified	root	N/A	49.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.96 %
Unclassified	root	N/A	49.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.96 %
Unclassified	root	N/A	49.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	41.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	41.35 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Candidatus Dadabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	30.77 %
candidate division CPR3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR3	5.77 %
candidate division WOR-3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	3.85 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Candidatus Dadabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	30.77 %
candidate division CPR3 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR3 → candidate division CPR3 bacterium	5.77 %
candidate division WOR-3 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	3.85 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	1.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886006\|SwRhRL3b_contig_3528753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	951	Open in IMG/M
3300002907\|JGI25613J43889_10042290	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1290	Open in IMG/M
3300004002\|Ga0055477_10457697	Not Available	500	Open in IMG/M
3300005294\|Ga0065705_10203195	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1416	Open in IMG/M
3300005294\|Ga0065705_10646577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	649	Open in IMG/M
3300005294\|Ga0065705_10774662	Not Available	620	Open in IMG/M
3300005294\|Ga0065705_10831589	Not Available	594	Open in IMG/M
3300005295\|Ga0065707_10242897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1150	Open in IMG/M
3300005295\|Ga0065707_11007395	Not Available	537	Open in IMG/M
3300005444\|Ga0070694_100880774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	738	Open in IMG/M
3300005471\|Ga0070698_100173051	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR3 → candidate division CPR3 bacterium	2099	Open in IMG/M
3300005471\|Ga0070698_100869668	Not Available	847	Open in IMG/M
3300005518\|Ga0070699_100003642	All Organisms → cellular organisms → Bacteria	13632	Open in IMG/M
3300005545\|Ga0070695_101781353	Not Available	516	Open in IMG/M
3300005549\|Ga0070704_102073596	Not Available	528	Open in IMG/M
3300005615\|Ga0070702_100730583	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	758	Open in IMG/M
3300005829\|Ga0074479_10921271	Not Available	544	Open in IMG/M
3300005985\|Ga0081539_10234157	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	827	Open in IMG/M
3300006049\|Ga0075417_10533734	Not Available	592	Open in IMG/M
3300006852\|Ga0075433_10703395	Not Available	885	Open in IMG/M
3300006852\|Ga0075433_11132658	Not Available	680	Open in IMG/M
3300006871\|Ga0075434_101127892	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	797	Open in IMG/M
3300006876\|Ga0079217_10285505	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	904	Open in IMG/M
3300006880\|Ga0075429_101376302	Not Available	615	Open in IMG/M
3300006894\|Ga0079215_10356584	Not Available	840	Open in IMG/M
3300006894\|Ga0079215_10621236	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	710	Open in IMG/M
3300006904\|Ga0075424_102295150	Not Available	567	Open in IMG/M
3300006918\|Ga0079216_10444485	Not Available	833	Open in IMG/M
3300006918\|Ga0079216_10940117	Not Available	658	Open in IMG/M
3300006969\|Ga0075419_10248785	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1188	Open in IMG/M
3300007004\|Ga0079218_13151558	Not Available	557	Open in IMG/M
3300007004\|Ga0079218_13519612	Not Available	531	Open in IMG/M
3300009087\|Ga0105107_10517074	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	831	Open in IMG/M
3300009094\|Ga0111539_10494315	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300009100\|Ga0075418_12271704	Not Available	592	Open in IMG/M
3300009147\|Ga0114129_10089775	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR3 → candidate division CPR3 bacterium	4260	Open in IMG/M
3300009147\|Ga0114129_11876179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	727	Open in IMG/M
3300009156\|Ga0111538_10026689	Not Available	7516	Open in IMG/M
3300009162\|Ga0075423_10444889	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1361	Open in IMG/M
3300009162\|Ga0075423_10958116	Not Available	908	Open in IMG/M
3300009162\|Ga0075423_12554345	Not Available	558	Open in IMG/M
3300009168\|Ga0105104_10182653	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1138	Open in IMG/M
3300009168\|Ga0105104_10474761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	702	Open in IMG/M
3300009171\|Ga0105101_10345657	Not Available	721	Open in IMG/M
3300009506\|Ga0118657_10140703	All Organisms → cellular organisms → Bacteria	3461	Open in IMG/M
3300009553\|Ga0105249_11484957	Not Available	750	Open in IMG/M
3300009789\|Ga0126307_10217892	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	1532	Open in IMG/M
3300009840\|Ga0126313_10713099	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300010036\|Ga0126305_10427300	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	876	Open in IMG/M
3300010037\|Ga0126304_10964279	Not Available	581	Open in IMG/M
3300010037\|Ga0126304_11248473	Not Available	510	Open in IMG/M
3300010038\|Ga0126315_10478141	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	792	Open in IMG/M
3300010038\|Ga0126315_11026382	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	554	Open in IMG/M
3300010039\|Ga0126309_10719106	Not Available	643	Open in IMG/M
3300010039\|Ga0126309_11278232	Not Available	507	Open in IMG/M
3300010040\|Ga0126308_10232236	Not Available	1194	Open in IMG/M
3300010040\|Ga0126308_11322471	Not Available	512	Open in IMG/M
3300010042\|Ga0126314_10731856	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	726	Open in IMG/M
3300010044\|Ga0126310_11518870	Not Available	550	Open in IMG/M
3300010045\|Ga0126311_10015312	All Organisms → cellular organisms → Bacteria	4418	Open in IMG/M
3300010045\|Ga0126311_10187994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	1499	Open in IMG/M
3300010047\|Ga0126382_10965763	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	743	Open in IMG/M
3300010166\|Ga0126306_10288419	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1261	Open in IMG/M
3300010166\|Ga0126306_10845316	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	740	Open in IMG/M
3300010166\|Ga0126306_11712271	Not Available	525	Open in IMG/M
3300010403\|Ga0134123_12055925	Not Available	631	Open in IMG/M
3300010403\|Ga0134123_12838040	Not Available	553	Open in IMG/M
3300011003\|Ga0138514_100066166	Not Available	751	Open in IMG/M
3300011413\|Ga0137333_1004988	All Organisms → cellular organisms → Bacteria	2937	Open in IMG/M
3300012157\|Ga0137353_1041409	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	822	Open in IMG/M
3300012201\|Ga0137365_10029159	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR3 → candidate division CPR3 bacterium	4250	Open in IMG/M
3300012201\|Ga0137365_10144584	Not Available	1787	Open in IMG/M
3300012201\|Ga0137365_10697090	Not Available	742	Open in IMG/M
3300012204\|Ga0137374_10065191	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	3627	Open in IMG/M
3300012204\|Ga0137374_10289728	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	1349	Open in IMG/M
3300012204\|Ga0137374_10376125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1137	Open in IMG/M
3300012350\|Ga0137372_10578349	Not Available	826	Open in IMG/M
3300012353\|Ga0137367_10165581	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR3 → candidate division CPR3 bacterium	1609	Open in IMG/M
3300012353\|Ga0137367_10712039	Not Available	699	Open in IMG/M
3300012354\|Ga0137366_10078685	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2509	Open in IMG/M
3300012354\|Ga0137366_10471659	Not Available	908	Open in IMG/M
3300012354\|Ga0137366_11013684	Not Available	577	Open in IMG/M
3300012355\|Ga0137369_10105626	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR3 → candidate division CPR3 bacterium	2302	Open in IMG/M
3300012358\|Ga0137368_10516432	Not Available	768	Open in IMG/M
3300012360\|Ga0137375_10044352	All Organisms → cellular organisms → Bacteria	4909	Open in IMG/M
3300012360\|Ga0137375_10436525	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR3 → candidate division CPR3 bacterium	1133	Open in IMG/M
3300013297\|Ga0157378_13029134	Not Available	521	Open in IMG/M
3300014877\|Ga0180074_1080577	Not Available	718	Open in IMG/M
3300014877\|Ga0180074_1102155	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	643	Open in IMG/M
3300014882\|Ga0180069_1014905	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1605	Open in IMG/M
3300014882\|Ga0180069_1136490	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	596	Open in IMG/M
3300015371\|Ga0132258_13949007	Not Available	1007	Open in IMG/M
3300015373\|Ga0132257_100603979	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1356	Open in IMG/M
3300015374\|Ga0132255_102615669	Not Available	771	Open in IMG/M
3300018052\|Ga0184638_1127572	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	927	Open in IMG/M
3300018053\|Ga0184626_10379437	Not Available	569	Open in IMG/M
3300018056\|Ga0184623_10035486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	2255	Open in IMG/M
3300018084\|Ga0184629_10093160	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1463	Open in IMG/M
3300018920\|Ga0190273_12404870	Not Available	501	Open in IMG/M
3300021090\|Ga0210377_10042563	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	3178	Open in IMG/M
3300026320\|Ga0209131_1031439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3107	Open in IMG/M
3300027675\|Ga0209077_1157632	Not Available	633	Open in IMG/M
3300032157\|Ga0315912_10521671	Not Available	945	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.81%
Host-Associated	Host-Associated	20.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.54%
Plants	Host-Associated → Plants	20.19%
Aquatic	Environmental → Aquatic	18.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.35%
Sediment	Environmental → Aquatic → Sediment	10.58%
Freshwater	Environmental → Aquatic → Freshwater	5.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.85%
Marine	Environmental → Aquatic → Marine	1.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.58%
Loam	Environmental → Terrestrial → Soil → Loam	6.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.58%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	18.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.42%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	6.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.96%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004002	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300012157	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014877	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D	Environmental	Open in IMG/M
3300014882	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL3b_0114.00000170	2162886006	Switchgrass Rhizosphere	MDHVGVLLGGFALLGIVTDGLLRHVEKKARKFPYCRNCGRNMDAAGPSKFMPGEVSRYLDQYNLPAIAASRFTCPKGHYQLWFIPKFGNTEKAFFLKEEL
JGI25613J43889_100422901	3300002907	Grasslands Soil	LLRKFEKPVRKFPWCRTCGMNMTIAEPSKVMPGEVSRHLDKYNLPTLAASRFKCPKGHYQLWFIPKFGNTEKAFFLREEL*
Ga0055477_104576971	3300004002	Natural And Restored Wetlands	MDSVGAFLGGLAILGITVGGLVRRVEKRSRKFPWCRTCGRNMLAVGLPKFMPGEVVNHLDRHGLPTVTASRFICPKGHYQLWFVPKFGNTEKAFFMKEEL*
Ga0065705_102031953	3300005294	Switchgrass Rhizosphere	MDHVGVLLGGFALLGIVTDGLLRHVEKKARKFPYCRNCGRNMDAAGPSKFMPGEVSRYLDQYNLPAIAASRFTCPKGHYQLWFIPKFGNTEKAFFLKEEL*
Ga0065705_106465772	3300005294	Switchgrass Rhizosphere	GVISMDYVGALLGGFALLGITIDGILRWVPKPARKFPWCRTCGANMIAAGLPKFMPGELVKHLDEHGLPTGVASRFICPNGHYQLWFIPKLGNTEEPFFLREGL*
Ga0065705_107746622	3300005294	Switchgrass Rhizosphere	MDQVGAMIGSFALLGLTIDGILRKVSKPARKFPWCRTCGRNLNAAGLPKLMPGEVSRYLDRFGLPTEVASRYICPNGHYQLWFIPKLGNTEQPFFLREGL*
Ga0065705_108315891	3300005294	Switchgrass Rhizosphere	MDYVGALLGGFVLLGITVDGLLRKVAKPTKKFPSCWTCGSHMVAVGLSKFMPGDVVRHLDKYSLPTAIASRFICPKGHCQLWFVPKLGNTEQPFFLREGL*
Ga0065707_102428971	3300005295	Switchgrass Rhizosphere	MDYVGALLGGLALLGIVTDGLLSKVEKSARKFPWCSTCGRNMNTVGLSKFMPGEVSRYLDRYDLPTVAASKFICPKGHYQLWFIPKFGNTGKAFFLREEL*
Ga0065707_110073952	3300005295	Switchgrass Rhizosphere	MDYVGALLGGFVLLGITVDGLLRKVAKPTKKFPSCWTCGSHMVAVGLSKFMPGDVVRHLDKYSLPTAIASRFICPKGHCQLWF
Ga0070694_1008807742	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	YFNKAFTDLIRLSGPRPRKGVIGMDNVGVFLGGFALLGITVDGLLRKFEKKARKFPYCRTCGTNMITTGTSKFMPGEVSRYLDQYNLPAVAASRFMCPKGHYQLWFIPKFGNTERAFFLREEL*
Ga0070698_1001730513	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDHVGVLLGGFALLGIVTDGLLRKVEKKARKFPYCRTCGRNMNTAGPSKLMPGEVSRYLDQYNLPAVAASRFMCPKGHYQLWFIPKFGNTEKAFFLKEEL*
Ga0070698_1008696681	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPYWTSGFVREWLRPRKGVIGMDYVGALLGGFALLGITVDGLLRKVAKSSRKFPWCRTCGANMHTAGLPIVMPGEVVNHLQKHGFPTAAASRFICPKGHYQLWFVPRFGNTENAFF
Ga0070699_1000036422	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDYAGLFVGGLMLLAIISYGLLSWIMKSARKFPWCLTCGKNMTTTSLPMFMPGEVVKHLGKYSLPMAAASRYICPKGHYQLWFVPRFGNTEKAFFLREEL*
Ga0070695_1017813531	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	NFNKASTGLTRLSRPRPRKGVIGMDYIGALLGGFALLGLTVDGILRKVAKPARKFPWCWTCGKEMNAARLPMFMPGEVTRHLDKHGLPTGIASRFICPDRHYQLWFIPKLGNTNEPFFMREQL*
Ga0070704_1020735961	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MDQVGVLLGSMALFGITVDGLLRKVEKKARKFPYCRTCGLNMNAAGTSKFMPGEVSRYLEQHNLPAVAASRFVCPKGHYQLWFIPKFGNTEKAFFLREEL*
Ga0070702_1007305831	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	RQLSDWTSSFDWEWLRPRKGVIGMDQVGALLGGFALLGLTVEGIIRKVEKPARTFPWCKTCGRNMRAAVLPRLMPGELSSHLGRHSLPTEAATLYVCPKGHYRLWFVPKLGNTEKAFFLREAL*
Ga0074479_109212711	3300005829	Sediment (Intertidal)	MDNVGVFLGGFALLGITVDGLLRRFEKKARKFPYCRTCGANMITAGSPKFMPGEVSRYLEQHDLPTLAASKFVCPKGHYQLWFIPRFGNTEKAFFLREEL*
Ga0081539_102341572	3300005985	Tabebuia Heterophylla Rhizosphere	MDRIGVLLGGFALLGLTVSEILRKVARPPKKFPWCWTCGNHMVAVSLPKFMPGEVANHLDKHGLPTGIASRFICPKGHYQLWFIPKLGNTEEPFFMREQL*
Ga0075417_105337341	3300006049	Populus Rhizosphere	GQKPKHSLFWLWPCQHGLLNFTKSANYRQLSDWTSGFVREWLRPRKGVIGMDQVGVLLGGCALLGLTVEGIIRKVEKPARRFPWCTTCGRNLDTTALPRLMPGELSSHLGRHSLPTEAATLYVCPKGHYRLWFVPKLGNTEKAFFLREAL*
Ga0075433_107033952	3300006852	Populus Rhizosphere	MNDVGLFLGGLVVLGIVSDRLLRRFNKSARKFPWCRDCGKNMVTVGLPKLMPGEVIRYLDQHRLPAVAASRFMCPKGHYQLWFVPKFGNTERAFFLKEEL*
Ga0075433_111326581	3300006852	Populus Rhizosphere	MDQVGALLGGMALFGITVDALLRKVTKPARKFPYCRTCGKDMFTAGLPKFMPGEVLNYLDKYGLPTIAASRFICPMGHYQLWFVPK
Ga0075434_1011278922	3300006871	Populus Rhizosphere	MDHVGALLGGFALLGIVTDGLLRTVEKKARKFPWCKTCGKNMIAAGLPKFMPGEVVNHLDKYGLPTIVASRFICPKGHYQLWFVPRFGNTEKAFFLREEL*
Ga0079217_102855051	3300006876	Agricultural Soil	MDHVGVLLGGMALFGFTVDGLLRKIEKKARKFPYCRTCGLNMNTAGPSKFMPGEVSRYLDQHNLPAIAASRFTCPKGHYQLWFIPKFGNTEKAFFLQEEL*
Ga0075429_1013763022	3300006880	Populus Rhizosphere	MDYVGALLGGFALLGITIDGLLRMVAKPARKFPWCWTCGSHMTAVGLPRFMPGEVVSHLGKYGLPTFIASRFICPKGHYQLWFIPKLGNTENAFFLREEL*
Ga0079215_103565842	3300006894	Agricultural Soil	MDNVGALLGGFALLGIVVDGLLRKVEKAARKFPWCRTCDRNMINSALPKVLPTEIIQYLDKYQLPAVVASRFVCPKGHYHLWFIPRLGNTERAFFLKEER*
Ga0079215_106212361	3300006894	Agricultural Soil	FINQINHLLLALSGIDLFEWLRPRKEVIGMDYVGALLGGLALLGITVDGLLRKVEKSSRKFPWCRTCGKNMFTAGLPKFMPGEVVNHLDKYGLPTVVASRFICPKGHYQLWFVPRFGNTEKAFFLKEEL*
Ga0075424_1022951501	3300006904	Populus Rhizosphere	ETRKRRLRRFRFTNSRHLPDWTSGFIREWLRPRKGVIGMDQVGALLGGFALLGLTVEGIIRKVEKPARTFPWCKTCGRNMRTAVLPRLMPGELSSHLGKHSLPTETAMLFVCPKGHYRLWFVPKLGNTEKAFFLREAL*
Ga0079216_104444852	3300006918	Agricultural Soil	GIFLGGLALLALTVDGLLRKVEKSARKFPWCRTCGKHMATVTALPRVLPAEIRQYLYRHQLPASVVSRFICPIGHYQLWFIPRFGNAERAFFLREEL*
Ga0079216_109401171	3300006918	Agricultural Soil	MDQAGIFLGGLALLALTVDGLLRKVEKSARKFPWCRTCGKHMATVTALPRVLPAEIRQYLYRHQLPASVVSRFICPIGHYQLWFIPKFGNAERGFFFREEL*
Ga0075419_102487853	3300006969	Populus Rhizosphere	MDYVGALLGGLVLFGITLDTVLRKVVKPTRKFPYCRTCGKDMFTAGTPKFMPGEVSNFLDKYGLPTVAASRF
Ga0079218_131515582	3300007004	Agricultural Soil	MDSVGVLLCGFALLGLTVDGLLRKVEKPARKFPWCRTCGMNMSTAEPSKVMPGEVSRYLDQHNLPTVVASRFICPKRH
Ga0079218_135196121	3300007004	Agricultural Soil	VGSGLRKEVIGMDNVGALLGGFALLGIVVDGLLRKVEKSARTFPWCRDCGKNMVKSALPQDLPTEVLRYLDQYQLPAVVTSRFVCPKRHYQLWFIPRMGNTEKAFFLKGEL*
Ga0105107_105170742	3300009087	Freshwater Sediment	DMDLVGSFLGGLALLGLVTDGLLRKIEKKARKFPYCRTCGTNMYTAGPSKFMPGEVSRYLDQYSLPAIAASRFTCPKGHYQLWFIPKFGHTEKAFFLREEP*
Ga0111539_104943152	3300009094	Populus Rhizosphere	MKYSLSLAHTGIDLFEWLRPRKEVIGMDQVGALLGGFALLGIIVDMLLKKFGRTSSKFPQCRSCGRQMQSAGLPMFMPGAVVNHLDMHGLPTAAASRFICPNGHYQLWYVPRFGNTEKAFFLKEEL*
Ga0075418_122717042	3300009100	Populus Rhizosphere	DYVGALLGGLVLFGITLDTVLRKVVKPTRKFPYCRTCGKDMFTAGIPKFVPSEVSNFLDKYGLPTVAASRFICPEGHYQLWFIPKFGNTEKAFFLREEL*
Ga0114129_100897757	3300009147	Populus Rhizosphere	MDHVGVLLGSMALLGITVDGLLRKVEKKARKFPYCRTCGLNMNTAGTSKFMPEEVSRYLDQYNLPTIAASRFTCPKGHYQLLFIPKFGNTERAFFLKEEL*
Ga0114129_118761791	3300009147	Populus Rhizosphere	MDYVGALLGGFGLLGLTVDGLLRKAEKKARKFPWCRTGGTNMIAAGLPKFMPGEVVSHLDKHGLPPVVASRYICPKGHYQLWFVPKLGNTEAPFFLREEL*
Ga0111538_100266899	3300009156	Populus Rhizosphere	LAHTGIDLFEWLRPRKEVIGMDQVGALLGGFALLGIIVDMLLKKFGRTSSKFPQCRSCGRQMQSAGLPMFMPGAVVNHLDMHGLPTAAASRFICPNGHYQLWYVPRFGNTEKAFFLKEEL
Ga0075423_104448892	3300009162	Populus Rhizosphere	MPYWTSGFVREWPRPRKGVIGMDYVGALLGGMALFGIITDGLLRKVAKPHRKFPWCWTCGLEMTAVSLPKFMPGEVVNHLGKYGLPTGIASRFICPKGHYQLWFIPKLGNTERPFFFREEL*
Ga0075423_109581163	3300009162	Populus Rhizosphere	MDHVGVLLGGLALLGITVDGLLRKVEKKARKFPYCRTCGLNMYAAGSAKFMPGEVSRFLEQYNLPTVVVSRFICPK
Ga0075423_125543451	3300009162	Populus Rhizosphere	VIAIDRIGVMLGSFAVLGIVVEQLLRKVPKKAQKFPYCRTCGANMIATGIPKFMPGEVSNYLDKYGLPTLVTSRFICPKGHYQLWFIPKFGNTEKAFFLREEL*
Ga0105104_101826531	3300009168	Freshwater Sediment	MDFVGFFLGGLAFLGMLAESIVGRAQKPARKFPWCRTCGSQMVAVGLPKFMPGEVVNHLGKYGLPTFVASRFICPKGHYQLWFVPGFGNTERTLFFKEEL*
Ga0105104_104747612	3300009168	Freshwater Sediment	MDSVGAFLGGLALLGITVDGLMRKVEKRSRKFPWCRTCGKNMLTVGLPKFIPGELVNHLDRHGLPTVTASRFICPNGHYQLWFVPKFGNTEKAFFMKEEL*
Ga0105101_103456572	3300009171	Freshwater Sediment	MDLVGSLLGGLALLGIVTDRLLRKIEKKARKFPYCRTCGTNMYTAGPAKFMPGEVSRYLDQYNLPTVAASRFMCPKGHYLLWFIPKFGNTEKAFFL
Ga0118657_101407033	3300009506	Mangrove Sediment	MDSVGAFLGGLAILGITVDGLVRRVEKRSRKFPWCRTCGRNMLTVGLPKFMPGEVVNHLDRHGLPTITASRFICPKGHYQLWFVPKFGNTEKAFFMKEEL*
Ga0105249_114849572	3300009553	Switchgrass Rhizosphere	LSDWTSGFVREWLRPRKGVIGMDQVGALLGGFALLGLTVEGIIRKVEKPARTFPWCKTCGRNMRAAVLPRLMPGELSSHLGKHSLPTETATLYVCPKGHYRLWFVPKLGNTEKAFFLREAL*
Ga0126307_102178923	3300009789	Serpentine Soil	MDHVGVLLGSMALFGITVDGLLRKVEKKARKFPYCRTCGMNMNTAGPSKFMPGEVSRYLEQYNLPAVAASRFTCPKGHYQLWFIPKFGNTERAFFLKEEL*
Ga0126313_107130992	3300009840	Serpentine Soil	MDHVGVLLGSMALFGITVDGLLRKVEKKARKFPYCRTCGLNMNTAGPSKFMPGEVSRYLEQYNLPALAASRFTCPKGHYQLWFIPKFGNTERAFFLKEEL*
Ga0126305_104273001	3300010036	Serpentine Soil	MDHVGVLLGSMALFGITVDGLLRKVEKKARKFPYCRTCGLNMNTAGPSKFMPGEVSRYLEQYNLPAIAASRFTCPKGHYQLWFIPKFGNTERAFFLKEEL*
Ga0126304_109642792	3300010037	Serpentine Soil	KGVIGMDQVGALLGGFALLGLTVEGIIRKIEKSSRKFPWCWTCGRHMQASERPMLMPGEVSNHLGKHGLPTGAASLFICPKGHYRLWYVPGFGETEKPFFLKEGL*
Ga0126304_112484732	3300010037	Serpentine Soil	RPRKGVIGMDYVGSLLGGFALFGIAFEGLLRKVYKPARKFPWCKTCGINMNIAEPSKVMPGEVSRHLDQHNLPTEAASRFRCPKGHYQLWFIPKFGNTERAFFLREEL*
Ga0126315_104781411	3300010038	Serpentine Soil	NHLLLALSGIDLFEWLRPRKEVIGMDHVGALLGGFALLGITVDGLLRKVEKSSRKFPWCRTCGKNMLTAGRPKFMPGEVVNHLHKYGLPTVVASRFICPKGHYQLLFVPRFGNTEKAFFLKEEL*
Ga0126315_104934012	3300010038	Serpentine Soil	MDQVGALLGGFALLGLTVEGIIRKIEKSSRKFPWCWTCGRHMQASERPMLMPGEVSNHLGKHGLPTGAASLFICPKGHYRLWYVPGFGETEKPFFLR
Ga0126315_110263822	3300010038	Serpentine Soil	MDNVGVLLGGFALLGITVDGLLRKVEKPPRKFPWCKTCGINMNIAEPSKVMPGEVSRYLDQHNLPTEVASRFMCPKRHYQLWFIPKLGNTEKAFFLREEL*
Ga0126309_107191062	3300010039	Serpentine Soil	LPYWTSGLDREWLRPRKGVIGMDQVGALLGGFALLGLTVDGILRKVEKPARKFPWCRTCGKNMNAAVLPRLMPGELSSHLGKHSLPTETAMLFVCPKGHYRLWFVPKLGNTEKAFFLREEL*
Ga0126309_112782322	3300010039	Serpentine Soil	MDHVGVLLGSMALFGITVDGLLRKIEKKARKFPYCRTCGLEMNTAGPSKFMPGEVSRYLEQYNLPAIAASRFTCPKGHYQLWFIHKFGNTEKAFFLKEEL*
Ga0126308_102322361	3300010040	Serpentine Soil	MDHVGVLLGGMALFGITVDGLLRKVEKKARKFPYCRTCGLNMNTAGPSKFMPGEVSRYLEQYNLPAVAASRFTCPKGHYQLWFIPKFGNTERAFFLREEL*
Ga0126308_113224711	3300010040	Serpentine Soil	MDHVGVLLGSMALFGITVDGLLRKVEKKARKFPYCRTCGRNMNPAGTSKFMPGEVSRYLEQYNLPAVAASRFVCPKGHYQLWFIPKFGNTEKAFFLREEL*
Ga0126314_107318561	3300010042	Serpentine Soil	MDHVGVLLGSMALFGITVDGLLRKIEKKARKFPYCRTCGLNMNTAGPSKFMPGEVSRYLEQYNLPAIAASRFTCPKGHYQLWFIPKFGNTERAFFLKEEL*
Ga0126310_115188702	3300010044	Serpentine Soil	LPYWTSSIDWRWLRPRKGVIGMDQVGALLGGFALLGLTVEGILRKVENPARKFPWCRKCGKNMNTAVLPRLMPGELSSHLGKHSLPTETAMLFVCPKGHYRLWFVPKLGNTEKAFF
Ga0126311_100153122	3300010045	Serpentine Soil	LPYWTSGFVREWLRPRKGVIGMDQVGALLGGFALLGLTVEGILRKVENPARKFPWCRKCGKNMNTAVLPRLMPGELSSHLGKHSLPTETAMLFVCPKGHYRLWFVPKLGNTEKAFFLREEL*
Ga0126311_101879941	3300010045	Serpentine Soil	MDHVGVLLGSMALFGITVDGLLRKVEKKARKFPYCRTCGLNMNTAGPSKFMPGEVSRYLEQYNLPAVAASRFTCPKGHYQLWFIPKFGNTERAFFLKEEL*
Ga0126382_109657632	3300010047	Tropical Forest Soil	MDYVGALLGGFALLGLTVDGILRKVAKPLKKFPWCWTCGKKMDAAGLPMLMPGEVARHLDKHGLPTAITSRFICPNKHYQLWFIPKLGNTEEPFILKEQL*
Ga0126306_102884192	3300010166	Serpentine Soil	MDHVGVLLGSMALFGITVDGLLRKVEKKARKFPYCRTCGLDMNTAGPSKFMPGEVSRYLEQYNLPAVAASRFTCPKGHYHLWFIPKFGNTERAFFLKEEL*
Ga0126306_108453162	3300010166	Serpentine Soil	MDHVGVLLGGFALLGITVDGLLRKVEKPRRKFPWCKTCGINMNIAEPSKVMPAEVSRYLDQHNLPMEVASRFMCPKRHYQLWFIPKLGNTEQAFFLREEL*
Ga0126306_117122712	3300010166	Serpentine Soil	LDREWLRPRKGVIGMDQVGALLGGFALLGLTVEGILRKVEKPARKFPWCRTCGRNMDAAVSPRLMPGELSSHLGKHSLPTETAMLFVCPKGHYRLWFVPKLGNTEKAFFLREEL*
Ga0134123_120559251	3300010403	Terrestrial Soil	VREWLRPRKGVIGMDYVGALLGGFALLGLTIDGILRKVGKPSRKFPWCRTCGLNMDKKELPMVMPGEVINHLTKHGLPTAAASRFICPNGHYQLWFVPRFGNTENAFFFREEL*
Ga0134123_128380401	3300010403	Terrestrial Soil	MAFTGSTRLSRPRPRKGVISMDYVGALLGGFALLGLTFDGILRKVAKPARKFPWCRTCGTNMITAGLPKFMPGEVARHLDKYGLPTGIASRFICPKGHYQLWFIPKLGNTDEPFFLREQL
Ga0138514_1000661662	3300011003	Soil	MDHVGVLLGGMALFGITVDGLLRKIEKKARKFPYCRTCGLNMNAAGPSKFMPGEVSRYLDQYNLPAVAASRFTCPKGHYHLWFIPKFGNTERAFFFKEEL*
Ga0137333_10049883	3300011413	Soil	MDYVGSLLGGLLLLGVVTDGLLRKVGKKARKFPCCRTCGMNMYTAGPAKFMPGEVSRYLEQHNLPTQAACRFICPNGHYQLWFIPKFGNTEKAFFLKEEL*
Ga0137353_10414092	3300012157	Soil	YGCGNRLLRTLIRLSWHRPRKGVIGMDHVGVLLGGFALLGITVEGLLRKIEKPPRKFPWCKTCGMNMITAEPSMFMPGEVSRHLDQHNLPTKAASRFRCPKGHYQLWFIPKFGNTERAFFLREEL*
Ga0137365_100291594	3300012201	Vadose Zone Soil	MDYLGALLGGFALLGLTVDGLLRKAEKKARKFPWCRTCGMNMLTAGLPKFMPGEVVNHLDKYGLPTVVASRFVCPKGHYQLWFVPRFGNTEKAFFLREEL*
Ga0137365_101445841	3300012201	Vadose Zone Soil	MDNVGLFLGGLVVLGIVSDKLLRKVNKSARKFPWCRTCGKNMVTVGLPKFMPEAIIKYLDQYELTPAVVSRFICPRGDYQLWFIPRFGDTERAFFLREEL*
Ga0137365_106970901	3300012201	Vadose Zone Soil	MLGSLAVLGIIIDGLLRKVPKKAQKFPCCRTCGANMFAAGVPKFMPGEVSNYLDKYGLPTVVTSRFICPKGHYQLWFIPKFGNTEKAFFLREEL
Ga0137374_100651915	3300012204	Vadose Zone Soil	MDLVGSILGGLALLGIIFERLLSKVEKRARKFPWCRTCGMNMYTAEPSKFMPGEVSRHLDQHNLPTLAASRFRCPKGHYQLWFIPKFGNTEKAFFLREEL*
Ga0137374_102897283	3300012204	Vadose Zone Soil	MDHVGVLLGGFALLGITMEGLLRKIEKPARKFPYCRTCGMNMITAGPSKFMPGEVSRHLDQHNLPTDAACRYMCPKGHYQLWFIPKFGNTEKAFFLREEL*
Ga0137374_103761252	3300012204	Vadose Zone Soil	MDHVGVLLGSMALFGITVDGLLRKIEKKARKFPYCRTCVLNMNAAGPSKFMPGEVSRYLDQYNLPTLAASRFMCPKGHYQLWFIPKFGNTERPFFLKEEM*
Ga0137372_105783493	3300012350	Vadose Zone Soil	MDHVGVLLGGFALLGIVTDGLLRKVEKKARKFPYCRTCGMNMYTVGPAKFMPGEVSRYLEQHNLPTLAACRFMCPKRHYQLWFIPKFGNTEKAFF
Ga0137367_101655811	3300012353	Vadose Zone Soil	MAFTDLDPFKRAQAQKREEVISMDLVGFILGGLALLGIIFERLLSKVEKRAHKFPWCRTCGMNMYTAEPSKFMPGEVSRHLDQHNLPTLAASR
Ga0137367_107120392	3300012353	Vadose Zone Soil	MDHVGVLLGGMALFGITVDGLLRKVEKKARKFPYCRTCGLNMNAAGPSKFMPGEVSRYLDQYNLPTLAASRFRCPKGHYQLWFIPKFGNTERPFFLKEEM*
Ga0137366_100786853	3300012354	Vadose Zone Soil	MDHVGVLLGGFALLGIVTDGLLRKVEKKARKFPYCRTCGMNMYTAGPSKFMPGEVSRYLDKYNLPAVAASRFMCPKGHYQLWFIPKFGNTEKAFFMKEEL*
Ga0137366_104716592	3300012354	Vadose Zone Soil	MDYVGALLGGFALLGLTVDGLLRKAEKKARKFPWCRTCGMNMLTAGLPKFMPGEVVNHLDKYGLPTVVASRFVCPKGHYQLWFVPRFGNTEKAFFLREEL*
Ga0137366_110136841	3300012354	Vadose Zone Soil	MDHVGVLLGSFALLGITMEGLLRKIEKPARKFPYCRTCGMNMITAGPSKFMPGEVSRHLDQHNLPTDAACRYMCPKGHYQLWFIPKFGNTEKAFFL
Ga0137369_101056263	3300012355	Vadose Zone Soil	MAFTDLDPFKRAQAQKREEVISMDLVGFILGGLALLGIIFERLLSKVEKRAHKFPWCRTCGMNMYTAEHSKFMPGEVSRYLDQHNLPTLAASRFRCPKGHYQLWFIPKFG
Ga0137368_105164321	3300012358	Vadose Zone Soil	MDYVGALLGGLALLGITVDGLLRKVEKSSRKFPWCRTCGLNMVHVSLPKFMPGEVINHLDKYGLPTIAASRFICPKGHYQLWFVPRFGNTEQAFFLKEEL*
Ga0137375_100443521	3300012360	Vadose Zone Soil	KRAQAQKREEVISMDLVGSILGGLALLGIIFERLLSKVEKRARKFPWCRTCGMNMYTAEPSKFMPGEVSRHLDQHNLPTLAASRFRCPKGHYQLWFIPKFGNTEKAFFLREEL*
Ga0137375_104365251	3300012360	Vadose Zone Soil	MAFTDLDPFKRAQAQKREEVISMDLVGFILGGLALLGIIFERLLSKVEKRAHKFPWCRTCGMNMYTAEHSKFMPGEVSRYLDQHNLPTLAASRFRCPKGHYQ
Ga0157378_130291341	3300013297	Miscanthus Rhizosphere	REWLRPRKGVIGMDQVGALLGGFALLGLTVEGIIRKVEKPARTFPWCKTCGKNMKAVALPRLMPGELSSHLGKHSLPTEAATLYVCPKGHYRLWFVPKLGNTEKAFFLREAL*
Ga0180074_10805772	3300014877	Soil	MDYVGSLLGGLLLLGVVTDGLLRKVGKKARKFPCCRTCGMNMYTAGPAKFMPGEVSRYLEQHNLPTQAACRFICPNGHYQLWFIPKFGNTEKAFFLREEL*
Ga0180074_11021552	3300014877	Soil	MDYVGSFLGGLAILGIISDRLLSKYQKSARKFPWCHTCGANMTTVGLPKFMPGEVLNYLDKYRLPVVAVIRFICPKGHYQLWFVPRFGNTEKAFFLKEEL*
Ga0180069_10149051	3300014882	Soil	RKEVIGMDYVGALLGGFVLLGVTVDGVLRKFAKPARKFPWCWTCGNHMTAVGLPKFMPGEVVNHLDKYGLPTVVASRFICPKGHYQLWFVPRFGNTEKAFFLQEEL*
Ga0180069_11364902	3300014882	Soil	RPRKGVIGMDYVGALLGGLALLGITIEGLLKTVEKSARKFPWCRTCGKNMITVGLPKFMPGEVLNHLDKYDLPAVTASRFICPKGHYQLWFVPRFGNTEKAFFLKEEL*
Ga0132258_139490072	3300015371	Arabidopsis Rhizosphere	LSDWTSGISRKWLRPRKEVIGMDQVGALLGGCALLGLTVEGIIRKVEKPPRTFPWCLTCGRNMKTVALPRLMPGELSSHLGRHSLPTEAAMLYVCPKEHYRLWFVPKLGNTEKAFLLREAL*
Ga0132257_1006039791	3300015373	Arabidopsis Rhizosphere	MDKVGALLGGLVLLGFAVDGIIRKIEKSFKTFPWCKTCGLNMHAVELPRLMPGEVSNHLDKYGLPTIAASRFVCPKGHYHLWYIPGFGNTEKPFFFREEM*
Ga0132255_1026156692	3300015374	Arabidopsis Rhizosphere	LAHTGIDLFEWLRPRKEVIGMDQVGALLGGFALLGIIVDMLLKKFGRTSSKFPQCRSCGRQMQTAGLPMFMPGAVVNHLDMHGLPTAAASRFICPNGHYQLWYVPRFGNTEKAFFLKEEL
Ga0184638_11275722	3300018052	Groundwater Sediment	LNFTNEINHLLALSGLDLFEWLRPRKEVIGMDYVGALLGGFALLGITVDGLIRKVEKSSRKFPWCRTCGKNMLTAGLPKFMPGEVVNHLDKYGLPTVVASRFICPKGHYQLWFVPRFGNTEKAFFLKEEL
Ga0184626_103794371	3300018053	Groundwater Sediment	MDHVGVLLGGFALLGITVEGLLRKIEKKARKFPYCRTCGRNMNTAGPSKFMPGEVSRYLDQYNLPAVAASRFMCPKGHYQLWFIPKFGNTERAFFLKEEL
Ga0184623_100354861	3300018056	Groundwater Sediment	MDYVGAVLGGLALLGIITDGLLRKVEKSARKFPWCRTCGTNMIAAGLPKFMPGEVVNHLDRHGLPTVAASRFICPKGHYQLWFVPRFGNTEQAFFLREEL
Ga0184629_100931602	3300018084	Groundwater Sediment	MDYVGSFLGGLAILGIISDRLLSKFEKSARKFPWCHTCGKNMITAGLPKFMPGEVLKHLDKHGLPAATASRFICPKGHYQLWFVPRFGNTEKAFFLKEEL
Ga0190273_124048701	3300018920	Soil	MDQAGIFLGGLALLALTVDGLLRKVEKPARKFPWCTTCGMNMSTAEPSKVMRGEVSRYLDQHNLPTEVASRFMCPKRHYQLWFIPKFGNTERAFFLREEL
Ga0210377_100425633	3300021090	Groundwater Sediment	MDYVGSFLGGLAILGIISDRLLSRFQKSARKFPWCRTCGKNMITVGLPKFMPGEVLNHLDKYGLPVVAASRFICPKGHYQLWFVPKFGNTEKAFFLKEEL
Ga0209131_10314391	3300026320	Grasslands Soil	MDYVGVLLGGCALLGITVDGLLRKFEKPVRKFPWCRTCGMNMTIAEPSKVMPGEVSRHLDKYNLPTLAASRFKCPKGHYQLWFIPKFGNTEKAFFLREEL
Ga0209077_11576321	3300027675	Freshwater Sediment	MDYVGVLLGSSVVLGFIAQRLVSTGPKAARRFPSCLTCGSYMTLVGLPKFMPGEVVNHLDRHGLPTHAASRFICPKGHYQLWYVPRFGNTERAFFMKEAL
Ga0315912_105216712	3300032157	Soil	MDYVGSFLGGLAILGIIFDMLLRRFQKSARKFPWCRTCGNNMITVGLPKFMPGEVIRHLDKYGLPVVAASRFMCPKGHYQLWFVPKFGNTENAFFLREEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098312

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences