Metagenome / Metatranscriptome Family F098302

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098302
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	65 residues
Representative Sequence	VPWSRKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD
Number of Associated Samples	82
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	33.66 %
% of genes near scaffold ends (potentially truncated)	30.77 %
% of genes from short scaffolds (< 2000 bps)	84.62 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.846 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.385 % of family members)
Environment Ontology (ENVO)	Unclassified (29.808 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.423 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.58% β-sheet: 19.78% Coil/Unstructured: 62.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00574	CLP_protease	11.54
PF00313	CSD	7.69
PF01053	Cys_Met_Meta_PP	4.81
PF00561	Abhydrolase_1	3.85
PF00534	Glycos_transf_1	2.88
PF02353	CMAS	1.92
PF13683	rve_3	1.92
PF12680	SnoaL_2	1.92
PF13527	Acetyltransf_9	1.92
PF00072	Response_reg	1.92
PF07862	Nif11	0.96
PF13649	Methyltransf_25	0.96
PF01176	eIF-1a	0.96
PF13520	AA_permease_2	0.96
PF05225	HTH_psq	0.96
PF13560	HTH_31	0.96
PF01695	IstB_IS21	0.96
PF02934	GatB_N	0.96
PF01323	DSBA	0.96
PF00211	Guanylate_cyc	0.96
PF00266	Aminotran_5	0.96
PF08940	DUF1918	0.96
PF13578	Methyltransf_24	0.96
PF13439	Glyco_transf_4	0.96
PF00107	ADH_zinc_N	0.96
PF00583	Acetyltransf_1	0.96
PF04041	Glyco_hydro_130	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	23.08
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	23.08
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	11.54
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	4.81
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	4.81
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	4.81
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	4.81
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	4.81
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	4.81
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	4.81
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	4.81
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	4.81
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	4.81
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	4.81
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.92
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	1.92
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	1.92
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.96
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.96
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.96
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	0.96
COG2511	Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain	Translation, ribosomal structure and biogenesis [J]	0.96
COG0064	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	Translation, ribosomal structure and biogenesis [J]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	70.19 %
Unclassified	root	N/A	21.15 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	69.23 %
Unclassified	root	N/A	21.15 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	59.62 %
Unclassified	root	N/A	21.15 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.88 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	59.62 %
Unclassified	root	N/A	21.15 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.88 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	59.62 %
Unclassified	root	N/A	21.15 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	2.88 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	59.62 %
Unclassified	root	N/A	21.15 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2.88 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig805126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M
2170459016\|G1P06HT01CV3C1	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300000956\|JGI10216J12902_109235686	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1338	Open in IMG/M
3300002120\|C687J26616_10065563	Not Available	1223	Open in IMG/M
3300002120\|C687J26616_10088047	Not Available	1012	Open in IMG/M
3300002407\|C687J29651_10086084	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300002407\|C687J29651_10297685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300005166\|Ga0066674_10152115	Not Available	1093	Open in IMG/M
3300005172\|Ga0066683_10075640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2021	Open in IMG/M
3300005172\|Ga0066683_10189971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1267	Open in IMG/M
3300005187\|Ga0066675_11308716	Not Available	534	Open in IMG/M
3300005446\|Ga0066686_10911119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M
3300005447\|Ga0066689_10932150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300005471\|Ga0070698_100550276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1093	Open in IMG/M
3300005558\|Ga0066698_10029721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3305	Open in IMG/M
3300005574\|Ga0066694_10538914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300005576\|Ga0066708_11065241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300006034\|Ga0066656_10219431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1215	Open in IMG/M
3300009012\|Ga0066710_100186621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2935	Open in IMG/M
3300009012\|Ga0066710_100733477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1509	Open in IMG/M
3300009089\|Ga0099828_10475289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1127	Open in IMG/M
3300009137\|Ga0066709_100304173	All Organisms → cellular organisms → Bacteria → Proteobacteria	2167	Open in IMG/M
3300009137\|Ga0066709_100665661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1492	Open in IMG/M
3300009137\|Ga0066709_102332898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	731	Open in IMG/M
3300009166\|Ga0105100_10698242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300009171\|Ga0105101_10498322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300009811\|Ga0105084_1014488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1254	Open in IMG/M
3300009818\|Ga0105072_1050115	Not Available	795	Open in IMG/M
3300009819\|Ga0105087_1030241	Not Available	819	Open in IMG/M
3300009837\|Ga0105058_1076451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	769	Open in IMG/M
3300009837\|Ga0105058_1115196	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300010044\|Ga0126310_11000389	Not Available	658	Open in IMG/M
3300010320\|Ga0134109_10248322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	670	Open in IMG/M
3300010333\|Ga0134080_10200494	Not Available	864	Open in IMG/M
3300011003\|Ga0138514_100003991	Not Available	2087	Open in IMG/M
3300011270\|Ga0137391_10718616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	829	Open in IMG/M
3300011443\|Ga0137457_1096295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	935	Open in IMG/M
3300012045\|Ga0136623_10067016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1568	Open in IMG/M
3300012185\|Ga0136619_10055469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1523	Open in IMG/M
3300012198\|Ga0137364_10174287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1566	Open in IMG/M
3300012198\|Ga0137364_11387600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300012201\|Ga0137365_10009532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7705	Open in IMG/M
3300012201\|Ga0137365_10647410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	774	Open in IMG/M
3300012209\|Ga0137379_10250322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1685	Open in IMG/M
3300012285\|Ga0137370_10520146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	730	Open in IMG/M
3300012349\|Ga0137387_10706331	Not Available	730	Open in IMG/M
3300012350\|Ga0137372_10240768	Not Available	1428	Open in IMG/M
3300012354\|Ga0137366_10544806	Not Available	835	Open in IMG/M
3300012356\|Ga0137371_10252550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1377	Open in IMG/M
3300012356\|Ga0137371_10325606	Not Available	1195	Open in IMG/M
3300012360\|Ga0137375_10883889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	711	Open in IMG/M
3300012360\|Ga0137375_11284653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554	Open in IMG/M
3300012684\|Ga0136614_10621443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	768	Open in IMG/M
3300013772\|Ga0120158_10302480	Not Available	773	Open in IMG/M
3300014157\|Ga0134078_10210320	Not Available	798	Open in IMG/M
3300017789\|Ga0136617_11172558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300017997\|Ga0184610_1036268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1407	Open in IMG/M
3300017997\|Ga0184610_1133898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	806	Open in IMG/M
3300018056\|Ga0184623_10042996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2052	Open in IMG/M
3300018056\|Ga0184623_10241156	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300018056\|Ga0184623_10405369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	599	Open in IMG/M
3300018075\|Ga0184632_10165194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300018077\|Ga0184633_10248720	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300018077\|Ga0184633_10455400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631	Open in IMG/M
3300018078\|Ga0184612_10283197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	852	Open in IMG/M
3300018431\|Ga0066655_10095597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1653	Open in IMG/M
3300019487\|Ga0187893_10752598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300025313\|Ga0209431_10124996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2031	Open in IMG/M
3300025319\|Ga0209520_10206634	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300025324\|Ga0209640_10073995	Not Available	2945	Open in IMG/M
3300025324\|Ga0209640_11343570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300025325\|Ga0209341_10864822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	678	Open in IMG/M
3300025326\|Ga0209342_10754057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	772	Open in IMG/M
3300025327\|Ga0209751_10415877	Not Available	1113	Open in IMG/M
3300025327\|Ga0209751_10727464	Not Available	782	Open in IMG/M
3300026296\|Ga0209235_1272499	Not Available	518	Open in IMG/M
3300026327\|Ga0209266_1051746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2016	Open in IMG/M
3300027379\|Ga0209842_1086646	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	539	Open in IMG/M
3300027718\|Ga0209795_10114293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	770	Open in IMG/M
3300027882\|Ga0209590_10733449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631	Open in IMG/M
3300028778\|Ga0307288_10198587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	772	Open in IMG/M
3300028793\|Ga0307299_10266917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	643	Open in IMG/M
3300028796\|Ga0307287_10354641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300028824\|Ga0307310_10099763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1290	Open in IMG/M
3300028828\|Ga0307312_11042373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300028875\|Ga0307289_10189993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	845	Open in IMG/M
3300028878\|Ga0307278_10030315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2478	Open in IMG/M
3300028878\|Ga0307278_10149044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1048	Open in IMG/M
3300028885\|Ga0307304_10203447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	848	Open in IMG/M
3300030516\|Ga0268255_10124767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	764	Open in IMG/M
3300031421\|Ga0308194_10273034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300031576\|Ga0247727_10236418	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300031949\|Ga0214473_10358859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1652	Open in IMG/M
3300031965\|Ga0326597_10036799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6192	Open in IMG/M
3300031965\|Ga0326597_10306901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1802	Open in IMG/M
3300033417\|Ga0214471_10108995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2280	Open in IMG/M
3300033811\|Ga0364924_070981	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300033814\|Ga0364930_0180625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	719	Open in IMG/M
3300034147\|Ga0364925_0030737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1762	Open in IMG/M
3300034164\|Ga0364940_0157900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	655	Open in IMG/M
3300034176\|Ga0364931_0256336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.12%
Host-Associated	Host-Associated	1.92%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.73%
Aquatic	Environmental → Aquatic	15.38%
Plants	Host-Associated → Plants	1.92%
Solid Waste	Engineered → Solid Waste	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.08%
Sediment	Environmental → Aquatic → Sediment	9.62%
Freshwater	Environmental → Aquatic → Freshwater	5.77%
Floodplain	Environmental → Terrestrial → Floodplain	4.81%
Cave	Environmental → Terrestrial → Cave	2.88%
Phylloplane	Host-Associated → Plants → Phylloplane	1.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.96%
Grass	Engineered → Solid Waste → Grass	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.77%
Loam	Environmental → Terrestrial → Soil → Loam	11.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.62%
Sand	Environmental → Terrestrial → Soil → Sand	5.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	4.81%
Ice	Environmental → Aquatic → Freshwater → Ice	3.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.96%
Composting	Engineered → Solid Waste → Grass → Composting	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.15%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	10.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.62%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	5.77%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.96%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.54%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	10.58%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.69%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	5.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	4.81%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	3.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.92%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.92%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.96%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002120	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2	Environmental	Open in IMG/M
3300002407	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012185	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ353 (21.06)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_00164290	2124908045	Soil	VPWHRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDESGAREEFLRVPVELLSKEPTD
2ZMR_03483890	2170459016	Switchgrass, Maize And Mischanthus Litter	VPWYRKPGFKLVVVKDVRRLTGLEPSVLLRRPNTQQLTRVDESGAREEFLRVPVELVSKEPTD
JGI10216J12902_1092356861	3300000956	Soil	VPWQRKPGFKVVAMKDVRHLTGLEPSELLRQPNTQQLTRVVESGAREEFVRVPVELLGNEPTDCETERRN*
JGI10216J12902_1172468672	3300000956	Soil	MKDVRRLTGLEPAEVLRRSDTQKLTSIDESGVREELVRVPVGLLIEEPEG*
C687J26616_100655633	3300002120	Soil	VPWSRKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD*
C687J26616_100880472	3300002120	Soil	GFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGXREEFVRVPVELLIEEPAD*
C687J29651_100860842	3300002407	Soil	VPWSRKPGFKLVAVKDVHRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD*
C687J29651_102976851	3300002407	Soil	LSLCLVGCPIPFAGVPWHRKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD*
Ga0066674_101521151	3300005166	Soil	VPWHRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDESGAREEFVRVPVELLSKEPTD*
Ga0066683_100756401	3300005172	Soil	VPWHKKPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVELLIEEPPD*
Ga0066683_101899713	3300005172	Soil	VPWHRRPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEDTTST*
Ga0066675_113087161	3300005187	Soil	VAATTPPNTLCGVRWRTDPSFRLVAIKDVRRLTGLEPAEVLRRPGTQELIRIDESGVREKLLRLPVELLIEDQEG*
Ga0066686_109111192	3300005446	Soil	KLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEDTTST*
Ga0066689_109321502	3300005447	Soil	RWGPATTCPNTLCRMRWRKEPGFRLVAMKDVRRLTGLEPAEVLRRSGTQKLTRIGETGIREELVRIPVELLIEEPEG*
Ga0070698_1005502762	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VPWHRKPGFKLPAMKDVRRLTGLEPSELLCRPNTQQLTRVDESGAREEFLRVPVELLSNEPTD*
Ga0066698_100297211	3300005558	Soil	HQHEGRQEDATGPPPSHSSCASTTALPYPRAGVPWHKKPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVELLIEEPPD*
Ga0066694_105389142	3300005574	Soil	VPWHRRPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLSKEPTD*
Ga0066708_110652412	3300005576	Soil	ASSTALPYPRAGVPWHKKPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVELLIEEPPD*
Ga0066656_102194312	3300006034	Soil	VPWHKKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEDTTST*
Ga0066710_1001866213	3300009012	Grasslands Soil	VPWHRRPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEDTTST
Ga0066710_1007334773	3300009012	Grasslands Soil	VPWHRKPGFKLVAMKDVRRLTGLEPSELLRRPNTQRLTRVDESGAREELLRVPVELLGKEPTD
Ga0099828_104752892	3300009089	Vadose Zone Soil	VRWRKDPGFRLVALKDVRRLTGLEPAEVLRRPGTQQLTRIDESGAREELVRVPVEVLIEEREG*
Ga0066709_1003041731	3300009137	Grasslands Soil	KLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVELLIEEPPD*
Ga0066709_1006656612	3300009137	Grasslands Soil	VRRRKDPSFSLVAKKHVRRLTGLEPAEVLRRPGTQELIRIDESGVREKLLRLPVELLIEDQEG*
Ga0066709_1021568212	3300009137	Grasslands Soil	LVAMKDVRRLTGLEPAEVLRRPGTQKLTRIDESGVREELLRVPVELLIEERED*
Ga0066709_1023328981	3300009137	Grasslands Soil	KLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPIELLIEEPAD*
Ga0105100_106982421	3300009166	Freshwater Sediment	VDVPWNRKPGFKLVAVKDVWRMTGLEPSDLLSRPNTQHLTRIDENGVQEECVRFPVELLLEEPKN*
Ga0105101_104983221	3300009171	Freshwater Sediment	VDVPWNRKPGFKLVAVKDVWRMTGLEPSDLLSRPNTQHLTRIDENGVQEEFVRFPVELLLEEPKN*
Ga0105084_10144881	3300009811	Groundwater Sand	VPWHRKPGFKLIAMKDVRRLTGLEPQELLSQPKTQQLTRTDESGAREEFVRVPVEL
Ga0105072_10501152	3300009818	Groundwater Sand	VPWHRKPGFKLIAIKDVQRLTGLEPWELLSRPNTQQLTRTDESGAREEFVRVPVKLLIDEPAD*
Ga0105087_10302412	3300009819	Groundwater Sand	VPWHRKPGFKLIAMKDVRRLTGLEPSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPVD*
Ga0105058_10764512	3300009837	Groundwater Sand	MNGNDSVPYPLGGVPRFRKPGFKLVAVKDVRRLTGLELSELLSRRNIQRLTRIDESGAREEFVRVPVELLIEEPAD*
Ga0105058_11151961	3300009837	Groundwater Sand	VPWHRKPSFKLIAMKDVRRLTGLEPWELLSRPNTQELTRTDESGAREEFVRVPVELLIDEPADWA
Ga0126310_110003892	3300010044	Serpentine Soil	VPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDESGAREECLRVPVELLSKKPTD*
Ga0134109_102483222	3300010320	Grasslands Soil	VPWHRGPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVELLIEEPPD*
Ga0134080_102004942	3300010333	Grasslands Soil	VPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDESGAREEFVRVPVELLSKEPTD*
Ga0138514_1000039913	3300011003	Soil	VPWDRKPGFKLVAVKDVRRLTGLEPSELLRRPDTQQLTRVDESGAREEFVRVPLELLSKEPTD*
Ga0137391_107186162	3300011270	Vadose Zone Soil	VAATTCPNTLYRVRWRKDPGFRLVALKDVRRLTGLEPAEVLRRPGTQQLTRIDESGAREELVRVPIEVLIEEREG*
Ga0137457_10962951	3300011443	Soil	VPWHRKPGFKLVAVKDMRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD*
Ga0136623_100670163	3300012045	Polar Desert Sand	LAVPYSLAGVPWYRKPGFKLIAVKDVRRLTGLEPWELLSRPNTQQLARTDESGAREEFVRVPVELLIEEPAD*
Ga0136619_100554692	3300012185	Polar Desert Sand	LAVPYSLAGVPWYRKPGFKLIAVKDVRRLTGLEPWDLLSRPNTQQLARTDESGAREEFVRVPVELLIEEPAD*
Ga0137364_101742873	3300012198	Vadose Zone Soil	VPWHKKPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVEL
Ga0137364_113876001	3300012198	Vadose Zone Soil	VPWHRRPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVDLLIEDTTST*
Ga0137365_100095322	3300012201	Vadose Zone Soil	VPWHKKPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIDESGAREEFVRVPVELLIEEPPD*
Ga0137365_106474102	3300012201	Vadose Zone Soil	VTARPILSFSVPWHRKPGFKLVAVKDVRRLTGLETSELLRRPNTQRLTRVDESGAREEFVRVPVELLGKEPTD*
Ga0137379_102503221	3300012209	Vadose Zone Soil	VPWHRKPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVELLIEEPPD*
Ga0137370_105201461	3300012285	Vadose Zone Soil	VPWHRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDESGAREEFLRVPVELLSKEPTD*
Ga0137387_107063312	3300012349	Vadose Zone Soil	VPWYRKPGFKLVAVKDVRRLTGLEPSELRRRPNVQQLTRVDESGAREEFLRVPVELLSKEPTD*
Ga0137372_102407682	3300012350	Vadose Zone Soil	VTWYRKPGFKLVAVKDVRRLTGLETSELLRRPNTQRLTRVDESGAREECVRVPVELMSKEPTD*
Ga0137366_105448061	3300012354	Vadose Zone Soil	VPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDESGAREEFVPVPVELLSKEPKD*
Ga0137371_102525502	3300012356	Vadose Zone Soil	VPWRKKPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVELLIEEPPD*
Ga0137371_103256062	3300012356	Vadose Zone Soil	VPWHRKRGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDESGAREEFVRVPVELLSKEPTD*
Ga0137375_108838891	3300012360	Vadose Zone Soil	YPLRVRWRKEPGFRLVAMKDVRRLTGLEPAEVLRRSGTQELTRIGETGIREKLVRIPVELLIEEPEG*
Ga0137375_112846531	3300012360	Vadose Zone Soil	LVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD*
Ga0136614_106214431	3300012684	Polar Desert Sand	IPSLSLCLIACPIPFAGVPWHRKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD*
Ga0120158_103024801	3300013772	Permafrost	VDVPWYRKPGFKLVAVKDVWRMTGLEPSDLLSRPNTQQLTRIDENGVQEEFVRFPVELLLEEPEN*
Ga0134078_102103202	3300014157	Grasslands Soil	VPWHRRPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDESGAREEFVRVPVELLSKEPTD*
Ga0136617_111725582	3300017789	Polar Desert Sand	LAVPYSLAGVPWYRKPGFKLITVKDVRRLTGLEPWELLSRPNTQQLARTDESGAREEFVRVPVELLIEEPAD
Ga0184610_10362682	3300017997	Groundwater Sediment	VPWHRKPGFKLVAVKDVRRLTGLEPSELLHRPNIQQLTRVDESGAREEFLRVPVELLIKEPTD
Ga0184610_11338982	3300017997	Groundwater Sediment	VPWHRKPGFKLIAMKDVRRLTGLEPWELLSQPNTQQLTRTDESGAREEFVRVPVELLIEEPAD
Ga0184623_100429962	3300018056	Groundwater Sediment	VPWHRKPGFKLVAVKDVRRLTGLEPSELLRLPNIQQLTRVDESGAREEFLRVPVELLIKEPTD
Ga0184623_102411562	3300018056	Groundwater Sediment	VPWHRKLRFKLIAMKDVRRLTGLEPWELLSRPNTQQLTRTDESGAREEFVRVPVELLIEEPAD
Ga0184623_104053691	3300018056	Groundwater Sediment	YPLGGVPWFRKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD
Ga0184632_101651943	3300018075	Groundwater Sediment	VPWHRKPGFKLIAIKDVRRLTGLEPRDLLSRPNTQQLTRTDESGAREEFVRVPVE
Ga0184633_102487201	3300018077	Groundwater Sediment	MIRRPLPSWSAPWYRRKPGFKLIAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEAAD
Ga0184633_104554001	3300018077	Groundwater Sediment	VPWSRKPGFKLVAAKDVRRLTGLELSELLSRQNTQRLTRIDESGAREEFVRVPVELLIEE
Ga0184612_102831971	3300018078	Groundwater Sediment	VPWHRKPGFKLVAVKDVRRLTGLDPSELLHRPNIQQLTRVDESGAREEFLRVPVELLIKEPTD
Ga0066655_100955972	3300018431	Grasslands Soil	VPWHKKPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVELLIEEPPD
Ga0187893_107525981	3300019487	Microbial Mat On Rocks	VPWYRKPGYKLVALKDVRRLTGLEPAELLLLTNTQQLTRVDESGAREELVRLPIELLLEQKED
Ga0209431_101249962	3300025313	Soil	VPWSRKPGFKLVAVKDVHRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD
Ga0209520_102066342	3300025319	Soil	MHSHRVMSGNDSRSPYPLGDVPWIRKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD
Ga0209640_100739954	3300025324	Soil	VPWSRKPGFKLVAVKDVRRLTGLEPSELLRRPNIQRLTRIDESGAREEFLRVPVELLIKEPAD
Ga0209640_113435701	3300025324	Soil	YKLVAVKDVRRLTGLELSELLSRQYIQRLTRIDESGAREEFVRIPVELLIEEPAD
Ga0209341_108648221	3300025325	Soil	LVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD
Ga0209342_107540571	3300025326	Soil	VPWHRKPGFKLIAIKDVRRLTGLEPWELLSRPNTQQLTRTDESGAREEFVRVPVELLIEEPAD
Ga0209751_104158771	3300025327	Soil	TGGPYPLGGVPWIRKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD
Ga0209751_107274641	3300025327	Soil	VPWHRKPGFKLIAIKDVRRLTGLEPWELLSRPNTQRLTRTDESGAREEFVRVPVELLIEEPAD
Ga0209235_12724991	3300026296	Grasslands Soil	GVPWHRKPGFKLVAMKDVRRLTGLEPSELLRRPNTQRLTRVDESGAREEFLRVPVELLGKEPTD
Ga0209266_10517463	3300026327	Soil	PSHSSCASTTALPYPRAGVPWHKKPGFKLVAVKDVRRLTGLELSELLSRQNTQRLTRIEESGAREEFVRVPVELLIEEPPD
Ga0209842_10866461	3300027379	Groundwater Sand	GVPWHRKPGFKLIAMKDVRRLTGLEPRELLSQPKTQQLTRTDESGAREEFVRVPVELLIDEPAD
Ga0209795_101142931	3300027718	Agave	VSITADVVGTDGHVPYPAEGVPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNIQQLTRVDESGAREEFVRVPVELLS
Ga0209590_107334491	3300027882	Vadose Zone Soil	VAATTCPNTLCRVRWRKDPGFRLVALKDVRRLTGLEPAEVLRRPGTQRLTRIDESGAREELVRVPVEVLIEEREG
Ga0307288_101985872	3300028778	Soil	MAAVSDNAGPSRTPPGGVPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDVSGAREEFLRVPVELLSKEPTD
Ga0307299_102669172	3300028793	Soil	MAAVSDNAGPSRTPPGGVPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDVSGAREEFLRVPVELLSKEPMD
Ga0307287_103546411	3300028796	Soil	VDVPWNRKPGFKLVAVKDVWRMTGFEPADVLGRPNTQQLTRIDENGVEEEFVRVPVELLLEEPES
Ga0307310_100997631	3300028824	Soil	VPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDVSGAREEFLRVPVELLSKEPTD
Ga0307312_110423731	3300028828	Soil	VPWYRKPGFKLVAAKDVRRLTGLEPSELVRRPNTQQLTRVDESGAREEFVRVPVELLSKEPTD
Ga0307289_101899932	3300028875	Soil	PPGGSACADVSIMAAVSDNAGPSRTPPGGVPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDVSGAREEFLRVPVELLSKEPTD
Ga0307278_100303152	3300028878	Soil	VPWYRKPGFKLVAAKDVRRLTGLEPSELLRRPDTQQLTRVDESGAREEFVRVPLELLSKEPTD
Ga0307278_101490441	3300028878	Soil	VPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNTQQLTRVDESGAREEFVRVPVELLSKEPTD
Ga0307304_102034471	3300028885	Soil	MAAVSDNAGPSRTPPGGVPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPDTQQLTRVDESGAREEFVRVPLELLSKEPTD
Ga0268255_101247672	3300030516	Agave	VPWYRKPGFKLVAVKDVRRLTGLEPSELLRRPNIQQLTRVDESGAREEFVRVPVELLS
Ga0308194_102730341	3300031421	Soil	KPGFKLVAVKDVRRLTGLEPSELLRRPDTQQLTRVDESGAREEFVRVPLELLSKEPTD
Ga0247727_102181481	3300031576	Biofilm	AMKDVRRLTGLEPLELLSRPNIQRLTRIDESGAREEFVRVPGELLIEEPAD
Ga0247727_102364183	3300031576	Biofilm	GGVRWYRQPGFKLVAVKDARRLTGLEPSELLRRSNIQQLTRIGKRGAREEFLRVPVELLIEEPTN
Ga0214473_103588593	3300031949	Soil	GFKLIAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPVD
Ga0326597_100367992	3300031965	Soil	VPWHRKPGFKLVAVKDVRRLTGLELSELLSRQKIQRLTRIDESGAREEFVRVPVELLIEEPAN
Ga0326597_103069011	3300031965	Soil	RKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAN
Ga0214471_101089951	3300033417	Soil	VPWHRKPGFKLVAVKDVRRLTGLDPSELLRLPNIQQLTRVDESGAREEFLRVPVELLIKEPTD
Ga0364924_070981_553_744	3300033811	Sediment	VPWHRKPVFKLIAMKDVRRLTGLEPSELLSRQNIQRLTRTDESGAREEFVRVPVELLIEEPAD
Ga0364930_0180625_70_291	3300033814	Sediment	LVGCPIPFAGVPWHRKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD
Ga0364925_0030737_1133_1324	3300034147	Sediment	VPWHRKPGFKLVAVKDMRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAD
Ga0364940_0157900_334_555	3300034164	Sediment	LVGCPIPFAGVPWHRKPGFKLVAVKDVRRLTGLELSELLSRQYIQRLTRIDESGAREEFVRVPVELLIEEPAD
Ga0364931_0256336_114_305	3300034176	Sediment	VPWHRKPGFKLVAVKDVRRLTGLELSELLSRQNIQRLTRIDESGAREEFVRVPVELLIEEPAN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098302

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences