Metagenome / Metatranscriptome Family F098300

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F098300
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	65 residues
Representative Sequence	MLIESTEQFQASTGIAIQRGPNEVTESDFERLPLATRTKLRILQEHGVLRLHPSGPEKPEARSDRDK
Number of Associated Samples	73
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.23 %
% of genes near scaffold ends (potentially truncated)	20.19 %
% of genes from short scaffolds (< 2000 bps)	78.85 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (54.808 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.115 % of family members)
Environment Ontology (ENVO)	Unclassified (27.885 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.692 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.89% β-sheet: 6.32% Coil/Unstructured: 75.79%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01163	RIO1	17.31
PF07992	Pyr_redox_2	16.35
PF00355	Rieske	14.42
PF09836	DUF2063	1.92
PF14759	Reductase_C	1.92
PF13472	Lipase_GDSL_2	1.92
PF04454	Linocin_M18	0.96
PF11617	Cu-binding_MopE	0.96
PF07715	Plug	0.96
PF05199	GMC_oxred_C	0.96
PF01722	BolA	0.96
PF08447	PAS_3	0.96
PF00753	Lactamase_B	0.96
PF00990	GGDEF	0.96
PF16576	HlyD_D23	0.96
PF00905	Transpeptidase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.81 %
Unclassified	root	N/A	45.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.81 %
Unclassified	root	N/A	45.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.81 %
Unclassified	root	N/A	45.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.19 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	7.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.19 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.19 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6.73 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2.88 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.19 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	2.88 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	2.88 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.19 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	2.88 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	2.88 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459020\|G1P06HT01BK536	Not Available	824	Open in IMG/M
3300000156\|NODE_c0575444	Not Available	1412	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105194721	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300003320\|rootH2_10097991	All Organisms → cellular organisms → Bacteria → Proteobacteria	2609	Open in IMG/M
3300003322\|rootL2_10055255	All Organisms → cellular organisms → Bacteria	1761	Open in IMG/M
3300005333\|Ga0070677_10005306	All Organisms → cellular organisms → Bacteria → Proteobacteria	4244	Open in IMG/M
3300005337\|Ga0070682_100408051	Not Available	1029	Open in IMG/M
3300005337\|Ga0070682_100434521	Not Available	1001	Open in IMG/M
3300005345\|Ga0070692_10194008	All Organisms → cellular organisms → Bacteria → Proteobacteria	1185	Open in IMG/M
3300005354\|Ga0070675_100802852	Not Available	860	Open in IMG/M
3300005354\|Ga0070675_101250223	Not Available	684	Open in IMG/M
3300005364\|Ga0070673_100573174	Not Available	1027	Open in IMG/M
3300005543\|Ga0070672_101421505	Not Available	621	Open in IMG/M
3300005547\|Ga0070693_100300517	All Organisms → cellular organisms → Bacteria → Proteobacteria	1082	Open in IMG/M
3300005993\|Ga0080027_10138079	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300009093\|Ga0105240_10367494	All Organisms → cellular organisms → Bacteria	1628	Open in IMG/M
3300009695\|Ga0123337_10276098	Not Available	855	Open in IMG/M
3300010397\|Ga0134124_10001366	All Organisms → cellular organisms → Bacteria	19660	Open in IMG/M
3300010397\|Ga0134124_12524795	Not Available	556	Open in IMG/M
3300012212\|Ga0150985_102484862	Not Available	529	Open in IMG/M
3300012212\|Ga0150985_104122978	Not Available	962	Open in IMG/M
3300012212\|Ga0150985_109823361	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300012212\|Ga0150985_111781732	Not Available	506	Open in IMG/M
3300012212\|Ga0150985_112203359	Not Available	503	Open in IMG/M
3300012212\|Ga0150985_113710417	Not Available	624	Open in IMG/M
3300012469\|Ga0150984_100661729	Not Available	666	Open in IMG/M
3300012469\|Ga0150984_104302834	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300012469\|Ga0150984_108227868	Not Available	4322	Open in IMG/M
3300012469\|Ga0150984_111750788	Not Available	585	Open in IMG/M
3300012469\|Ga0150984_120223491	Not Available	527	Open in IMG/M
3300012882\|Ga0157304_1048784	Not Available	645	Open in IMG/M
3300012891\|Ga0157305_10033145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	1018	Open in IMG/M
3300012895\|Ga0157309_10027117	Not Available	1299	Open in IMG/M
3300012898\|Ga0157293_10170956	Not Available	631	Open in IMG/M
3300012914\|Ga0157297_10088458	Not Available	904	Open in IMG/M
3300012916\|Ga0157310_10010987	All Organisms → cellular organisms → Bacteria	2189	Open in IMG/M
3300012916\|Ga0157310_10340551	Not Available	603	Open in IMG/M
3300012930\|Ga0137407_11545934	Not Available	631	Open in IMG/M
3300012943\|Ga0164241_10005190	All Organisms → cellular organisms → Bacteria → Proteobacteria	12291	Open in IMG/M
3300012943\|Ga0164241_10026672	All Organisms → cellular organisms → Bacteria → Proteobacteria	4428	Open in IMG/M
3300012984\|Ga0164309_10000002	All Organisms → cellular organisms → Bacteria → Proteobacteria	189970	Open in IMG/M
3300012984\|Ga0164309_10000360	All Organisms → cellular organisms → Bacteria → Proteobacteria	25861	Open in IMG/M
3300012985\|Ga0164308_10354303	Not Available	1185	Open in IMG/M
3300012985\|Ga0164308_11042418	Not Available	729	Open in IMG/M
3300012985\|Ga0164308_11191964	Not Available	687	Open in IMG/M
3300012988\|Ga0164306_10228969	Not Available	1321	Open in IMG/M
3300012988\|Ga0164306_10329995	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300013772\|Ga0120158_10089986	All Organisms → cellular organisms → Bacteria → Proteobacteria	1887	Open in IMG/M
3300014969\|Ga0157376_10013589	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6081	Open in IMG/M
3300014969\|Ga0157376_10490285	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300018481\|Ga0190271_10463253	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300019361\|Ga0173482_10254067	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300019362\|Ga0173479_10024421	All Organisms → cellular organisms → Bacteria → Proteobacteria	1762	Open in IMG/M
3300019362\|Ga0173479_10285594	Not Available	744	Open in IMG/M
3300021478\|Ga0210402_10767023	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300022561\|Ga0212090_10320206	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1186	Open in IMG/M
3300022878\|Ga0247761_1003200	All Organisms → cellular organisms → Bacteria → Proteobacteria	2742	Open in IMG/M
3300022878\|Ga0247761_1007559	All Organisms → cellular organisms → Bacteria	1805	Open in IMG/M
3300022894\|Ga0247778_1000294	All Organisms → cellular organisms → Bacteria	78397	Open in IMG/M
3300022897\|Ga0247764_1028020	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1810	Open in IMG/M
3300022904\|Ga0247769_1017299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2164	Open in IMG/M
3300022904\|Ga0247769_1131959	Not Available	628	Open in IMG/M
3300022908\|Ga0247779_1133397	Not Available	649	Open in IMG/M
3300022911\|Ga0247783_1000196	All Organisms → cellular organisms → Bacteria → Proteobacteria	17765	Open in IMG/M
3300022911\|Ga0247783_1178682	Not Available	603	Open in IMG/M
3300022936\|Ga0247806_10028735	All Organisms → cellular organisms → Bacteria	2326	Open in IMG/M
3300023074\|Ga0247737_1165468	Not Available	584	Open in IMG/M
3300023078\|Ga0247756_1054680	Not Available	705	Open in IMG/M
3300023092\|Ga0247740_1000631	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	16240	Open in IMG/M
3300023097\|Ga0247757_10096654	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300023261\|Ga0247796_1123818	Not Available	511	Open in IMG/M
3300023264\|Ga0247772_1000018	All Organisms → cellular organisms → Bacteria → Proteobacteria	159411	Open in IMG/M
3300023265\|Ga0247780_1106285	Not Available	738	Open in IMG/M
3300023269\|Ga0247773_1037059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1644	Open in IMG/M
3300023269\|Ga0247773_1054015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	1329	Open in IMG/M
3300025913\|Ga0207695_10352611	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300025934\|Ga0207686_11209763	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300026116\|Ga0207674_10941073	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300026121\|Ga0207683_11416333	Not Available	642	Open in IMG/M
3300028652\|Ga0302166_10022117	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300028652\|Ga0302166_10108426	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300028870\|Ga0302254_10063980	Not Available	1330	Open in IMG/M
3300029923\|Ga0311347_10794905	Not Available	575	Open in IMG/M
3300029987\|Ga0311334_10183641	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1593	Open in IMG/M
3300029987\|Ga0311334_10309680	Not Available	1236	Open in IMG/M
3300029987\|Ga0311334_10762747	Not Available	794	Open in IMG/M
3300029990\|Ga0311336_10103997	All Organisms → cellular organisms → Bacteria	2251	Open in IMG/M
3300030001\|Ga0302272_1045013	Not Available	1363	Open in IMG/M
3300030019\|Ga0311348_10665153	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300030114\|Ga0311333_10226674	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300030294\|Ga0311349_11076755	Not Available	752	Open in IMG/M
3300030838\|Ga0311335_10280351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	1128	Open in IMG/M
3300030988\|Ga0308183_1028734	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1005	Open in IMG/M
3300031232\|Ga0302323_101126947	Not Available	875	Open in IMG/M
3300031232\|Ga0302323_103292512	Not Available	514	Open in IMG/M
3300031456\|Ga0307513_10023987	All Organisms → cellular organisms → Bacteria → Proteobacteria	7108	Open in IMG/M
3300031726\|Ga0302321_100426089	All Organisms → cellular organisms → Bacteria → Proteobacteria	1450	Open in IMG/M
3300031726\|Ga0302321_101427587	Not Available	797	Open in IMG/M
3300031726\|Ga0302321_102447602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300031902\|Ga0302322_100094730	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3091	Open in IMG/M
3300031918\|Ga0311367_10079925	All Organisms → cellular organisms → Bacteria	3489	Open in IMG/M
3300031938\|Ga0308175_100414467	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300032157\|Ga0315912_10005462	All Organisms → cellular organisms → Bacteria	11683	Open in IMG/M
3300032157\|Ga0315912_10414203	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.08%
Host-Associated	Host-Associated	25.00%
Engineered	Engineered	1.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.15%
Plants	Host-Associated → Plants	25.00%
Aquatic	Environmental → Aquatic	1.92%
Solid Waste	Engineered → Solid Waste	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	34.62%
Peat	Environmental → Terrestrial → Peat	19.23%
Plant Litter	Environmental → Terrestrial → Plant Litter	17.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.69%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Rhizome	Host-Associated → Plants → Rhizome	1.92%
Grass	Engineered → Solid Waste → Grass	1.92%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	19.23%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	17.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.81%
Loam	Environmental → Terrestrial → Soil → Loam	3.85%
Ice	Environmental → Aquatic → Freshwater → Ice	1.92%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	1.92%
Composting	Engineered → Solid Waste → Grass → Composting	1.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	19.23%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	17.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	1.92%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.96%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.96%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.12%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	18.27%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	17.31%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	5.77%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.85%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.92%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.96%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459020	Litter degradation NP2	Engineered	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003322	Sugarcane root Sample L2	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009695	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - frozenSSSS metaG	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022561	Borup_combined assembly	Environmental	Open in IMG/M
3300022878	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L111-311C-4	Environmental	Open in IMG/M
3300022894	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5	Environmental	Open in IMG/M
3300022897	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L051-202B-4	Environmental	Open in IMG/M
3300022904	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L166-409R-6	Environmental	Open in IMG/M
3300022908	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5	Environmental	Open in IMG/M
3300022911	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L064-202C-5	Environmental	Open in IMG/M
3300022936	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L059-202B-1	Environmental	Open in IMG/M
3300023074	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L028-104C-2	Environmental	Open in IMG/M
3300023078	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L066-202C-4	Environmental	Open in IMG/M
3300023092	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L148-409B-2	Environmental	Open in IMG/M
3300023097	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L126-311R-4	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300023264	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L151-409C-6	Environmental	Open in IMG/M
3300023265	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L079-202R-5	Environmental	Open in IMG/M
3300023269	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L092-311B-6	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental	Open in IMG/M
3300028870	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030001	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_2	Environmental	Open in IMG/M
3300030019	II_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2NP_00416940	2170459020	Switchgrass, Maize And Mischanthus Litter	MLIESTEAFLASTGIAIQRGPNEVAESDFERLPLATRTKLRILQEHGVLRLRPSYEQKPESTGEPGE
NODE_05754441	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MLIESTEQFHASTGIAIQRGANEVAESDFERLPLATRTKLRILQEHGVVRVHERGSETLESLADRSK*
INPhiseqgaiiFebDRAFT_1051947212	3300000364	Soil	MLIESTEQFQASTGIAIQRGPNEVSESDFERLPQAMRTKLRILQEHGVVRVHASE
rootH2_100979913	3300003320	Sugarcane Root And Bulk Soil	MLIESTEHFHASAGIAIQRGPNEVAESDYESLPAATRKKLRILQEHGVVRLHSRTASENAAPPSERQLGAQTA*
rootL2_100552553	3300003322	Sugarcane Root And Bulk Soil	MLIESTEQFQASSGIAIQRGTNEVAESDFERLPLATRTKLRILQEHGVVRVHSRETEAGEAPAGRSK*
Ga0070677_100053061	3300005333	Miscanthus Rhizosphere	MLIESTEQFQASTGIAIQRGPNEVTESDFERLPLATRTKLRILQEHGVLRLHPSEAEKAKVRAEQAK*
Ga0070682_1004080512	3300005337	Corn Rhizosphere	MLIESTEQFQAATGIAIQRGENEVAESDFERLPLATRTKLRILQEHGVLRVRPSQVETRDPAADRNK*
Ga0070682_1004345212	3300005337	Corn Rhizosphere	MLIESTEQFQASTGIAIQRGPNEVTESDFARLPLATRTKLRILQEHGVLRLHPTEAEKPEARAEQAK*
Ga0070692_101940082	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MLIESTEQFQASTGIAIQRGANEVAESDFERLPLATRTKLRILQEHGVVRVHDLRESKAHSEIEKPAAPAEPKLAEGSK*
Ga0070675_1008028523	3300005354	Miscanthus Rhizosphere	MLIESTEEFLASTGMAIQRGPNEVAESDFERLPLSTRTKLRILQEHGVLRLRPSHEQKPELCCEPHE*
Ga0070675_1012502231	3300005354	Miscanthus Rhizosphere	MLLIESTEQFQASSAIEIRRGPNEVDEVDFERLPVATRTKLRILQEHGVLRLRPSESRAAQEK*APCRAG
Ga0070673_1005731743	3300005364	Switchgrass Rhizosphere	MLIESTEEFLASTGMAIQSGPNEVAESDFERLPLSTRTKLRILQEHGVLRLRPSHEQKPELCCEPHE*
Ga0070672_1014215051	3300005543	Miscanthus Rhizosphere	MLIESTEQFQASTGIAIQRGKNEVAESDFEQLPLATRTKLRILQEHGVLRLRPSDPKK*
Ga0070693_1003005172	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MLIESTEQFQASTGIAIQRGANEVAESDFERLPLATRTKLRILQEHGVVRVHASESEKAAARPEPKLAEGTK*
Ga0080027_101380792	3300005993	Prmafrost Soil	MLIESTEQFQASDGIAIRRGPNEVTESDYERLPVATRTKLRILQEHGVVRLHPRADAEKRASQDK*
Ga0105240_103674942	3300009093	Corn Rhizosphere	MLIESTEQFQASAAIEIRRGPNEVDESDFERLPVATRTKLRILQEHGVLRLRPSETEKREPRADK*
Ga0123337_102760981	3300009695	Glacier Valley	MLIESTEQFQASAAIAIRRGPNEVAEVDFERLPIATRTKLRILQEHGVLRLRPSDAEKK*
Ga0134124_100013663	3300010397	Terrestrial Soil	MLIESTEQFQASTGIAIQRGTNEVAESDFERLPLATRTKLRILQEHGVVRVHTSGAKEREALPERKK*
Ga0134124_125247951	3300010397	Terrestrial Soil	MLIESTEQFQAATGIAIQRGENEVAESDFESLPLATRTKLRILQEHGVLRVRPSQAETRDPAADRSK*
Ga0150985_1024848622	3300012212	Avena Fatua Rhizosphere	MLIESTEQFQAAIGIAIQRGENEVAESDFERLPLATRTKLRILQEHGVLRVRPSQVETRDPAADRSK*
Ga0150985_1041229781	3300012212	Avena Fatua Rhizosphere	MLIESTEQFHASSGIAIQRGANEVAESDFERLPLATRTKLRILQEHGVLRVHSTDEARPKPHG*
Ga0150985_1098233612	3300012212	Avena Fatua Rhizosphere	MLIESTEQFQAAIGIAIQRGTNEVAESDFERLPLATRTKLRILQEHGVVRVHASETKEREAPKK*
Ga0150985_1117817321	3300012212	Avena Fatua Rhizosphere	MLIESTEQFQASSGIAIQRGANEVAESEFENLPLATRTKLRILQEHGVLRLRPSNTEK*
Ga0150985_1122033592	3300012212	Avena Fatua Rhizosphere	MLIESTEQFQASAAIEIRRGPNEVDEVDFERLPVATRTKLRILQEHGVLRLRPSETRAEQEK*
Ga0150985_1137104171	3300012212	Avena Fatua Rhizosphere	MLIESTEQFHASIGIAIQRGANEVAESDFERLPLSTRTKLRILQEHGVLRVHPNDEATPKPHG*
Ga0150984_1006617292	3300012469	Avena Fatua Rhizosphere	MLLIESTEQFQASAAIEIRRGPNEVDEVDFERLPVATRTKLRILQEHGVLRLRPSEKRAAHEK*
Ga0150984_1043028341	3300012469	Avena Fatua Rhizosphere	MLIESTEQFQASTGIAIQRGTNEVTESDFERLPAATRTKLRILQEHGVVRVHTSGSEKREPPSEATK*
Ga0150984_1082278683	3300012469	Avena Fatua Rhizosphere	MLIESTEQFQASAAIEIRRGPNEVDEVDFERLPVATRTKLRILQEHGVLRLRPSETRAAQEK*
Ga0150984_1117507881	3300012469	Avena Fatua Rhizosphere	MLIESTEQFQASAAIEIRRGPNEVDEVDFERLPLATRTKLRILQEHGVLRLRPSEQRRAQET*
Ga0150984_1202234911	3300012469	Avena Fatua Rhizosphere	MLIESTEQFQAAIGIAIQRGTNEVAESDFERLPLATRTKLRILQEHGVVRVHTSETKERDALKK*
Ga0157304_10487842	3300012882	Soil	MLIESTEQFQASTGIAIQRGTNEVAESDFERLPLATRTKLRILQEHGVVRVHTSEAKEREALAERKK*
Ga0157305_100331451	3300012891	Soil	MLIESTEAFLAATGIAIQRGPNEVAESDFESLPLATRTKLRILQEHGVLRLRPGNPQKREPRSEPEE*
Ga0157309_100271172	3300012895	Soil	MLIESTEEFLASTGMAIQRGPNEVAESDFERLPLSTRTKLRILQEHGVLRLRPSYEQKPESTGEPGE*
Ga0157293_101709562	3300012898	Soil	MLIESTEEFLASTGMAIQRGPNEVAESDFERLPLSTRTKLRILQEHGVLRLRPGNPQKREPRSEPEE*
Ga0157297_100884582	3300012914	Soil	MLIESTEQFQASTGIAIQRGTNEVAESDFERLPLATRTKLRILQEHGVLRVRASEAEKPAPSADQNK*
Ga0157310_100109873	3300012916	Soil	MLIESTEQFQASTGIAIQRGTNEVAESDFQRLPLATRIKLRILQEHGVLRLHESKAESPAPPAERAERAK*
Ga0157310_103405511	3300012916	Soil	MLIESTEAFLASTGIAIQRGPNEVAESDFESLPLATRTKLRILQEHGVLRLRPGNPQKREPRSEPEE*
Ga0137407_115459341	3300012930	Vadose Zone Soil	MLIESTEQFQASDGIAIRRGPNEVTESDYERLPVATRTKLRILQEHGVLRLHPRAEADKRANQDK*
Ga0164241_1000519012	3300012943	Soil	MLIESTEQFHASTGIAIQRGANEVAESDFERLPLATRTKLRILQEHGVVRVLESGTETRESLADRSK*
Ga0164241_100266722	3300012943	Soil	MLIESTEQFQVSTGIAIQRGTNEVAESDFERLSPATRTKLRILQEHGVVRVHTSAPKEREGLERKKGGA*
Ga0164309_1000000288	3300012984	Soil	MLIESTEQFHASTGIAIQRGTNEVAESDFERLPPATRTKLRILQEHGVVRVHTSVAEKPEPPADRSTLAGRSK*
Ga0164309_1000036024	3300012984	Soil	MLIESTEQFHASTGIAIQRGSNEVAESDFERLPLATRTKLRILQEHGVVRVHESGTETSESRANRSK*
Ga0164308_103543031	3300012985	Soil	IAIQRGTNEVAESDFERLPPATRTKLRILQEHGVVRVHASVAEKPEPLAERGK*
Ga0164308_110424181	3300012985	Soil	MLIESTEQFQASTGIAIQRGPNEVTESDFEQLPLATRTKLRILQEHGVLRLRPSETEKPEVRAEQAK*
Ga0164308_111919642	3300012985	Soil	QRGPNEVAESDFERLPLATRTKLRILQEHGVLRLRPSHEQKPESTGEPGE*
Ga0164306_102289692	3300012988	Soil	MLIESTEQFHASTGIPIQRGTNEVAESDFERLPLATRTKLRILQEHGVVRVHAGVAEKPKALPERSK*
Ga0164306_103299951	3300012988	Soil	MLIESTEQFQASTGIAIQGGANEVAESDFERLPLATRTKLRILQEHGVVRVHDLRESKAHSEIEKPAAPAEPKLAEGSK*
Ga0120158_100899862	3300013772	Permafrost	MLIESTEQFQASDGIAIRRGPNEVTESDYERLPVATRTKLRILQEHGVVRLHPRADTVEKRASQDK*
Ga0157376_100135892	3300014969	Miscanthus Rhizosphere	MLIESTEQFQASTGIAIQRGPNEVTESDFERLPLATRTKLRILQEHGVLRLHPSGPEKPEARSDRDK*
Ga0157376_104902852	3300014969	Miscanthus Rhizosphere	MLIESTEQFQAATGIAIQRGENEVAQSDFERLPLATRTKLRILQEHGVLRLRPSETETRAADADQSK*
Ga0190271_104632532	3300018481	Soil	MLIESTEQFQASTGIAIQRGPNEVAESDFERLPLATRTKLRILQEHGVVRLRPSEGEMSQATHPARVE
Ga0173482_102540672	3300019361	Soil	MLIESTEQFQASTGIAIQRGTNEVAESDFERLPLATRTKLRILQEHGVVRVHTSEAKEREALAERKK
Ga0173479_100244212	3300019362	Soil	MLIESTEEFLASTGMAIQRGPNEVAESDFERLPLSTRTKLRILQEHGVLRLRPSHEQKPELCCEPHE
Ga0173479_102855941	3300019362	Soil	MLIESTEQFQASTGIAIQRGTNEVAESDFQRLPLATRIKLRILQEHGVLRLHESKAESPAPPAERAERAK
Ga0210402_107670232	3300021478	Soil	MLIESTEHFHASAAIAIQRGPNEVTESEYERLPAATRTKLRILQEHGVVRVHPAAEPKPAERKA
Ga0212090_103202062	3300022561	Glacier Valley	MLIESTEQFQASAAIAIRRGPNEVAEVDFERLPIATRTKLRILQEHGVLRLRPSDAEKK
Ga0247761_10032002	3300022878	Plant Litter	MLIESTEQFQASTGIAIQRGENEVAESDFESLPLATRTKLRILQEHGVLRVRASEAEKPAPSADQNK
Ga0247761_10075591	3300022878	Plant Litter	MLIESTEQFLASTGIAIQRGANEVAEGDFERLPLATRTKLRILQEHGVLRLRPSASEPSEPRTERDE
Ga0247778_100029457	3300022894	Plant Litter	MLIESTEQFQASTGIAIVRGENEVAESDFEQLPLATRTKLRILQEHGVLRVRSSETEKLEPPRDGNK
Ga0247764_10280202	3300022897	Plant Litter	MKSPDSAKVAMLIESTEQFQASSGIAIQRGPNEVAESDFERLPLATRTKLLILQEHGVLRLRKSEPEEREPGTHRAK
Ga0247769_10172992	3300022904	Plant Litter	MLIESTEQFQASTGIAIQRGKNEVAESDFEQLPLATRTKLRILQEHGVLRLRPSDPKK
Ga0247769_11319591	3300022904	Plant Litter	MNSPDSAKVAMLIESTEQFQASSGIAIQRGPNEVAECDFERLPLATRTKLLILQEHGVLRLRKSEPEE
Ga0247779_11333971	3300022908	Plant Litter	MLIESTEQFQAATGIAIQRGENEVAESDFESLPLATRTKLRILQEHGVLRVRPSQAETRDPAADRSK
Ga0247783_100019612	3300022911	Plant Litter	VWEPGKRDVTMLIESTEAFLAATGIAIQRGPNEVAESDFESLPLATRTKLRILQEHGVLRLRPGNPQKREPRSEPEE
Ga0247783_11786822	3300022911	Plant Litter	MLIESTEQFQASTGIAIQRGANEVAESDFESLPLATRTKLRILQEHGVVRLHVGAAKAPELPLDRNK
Ga0247806_100287353	3300022936	Plant Litter	MNSPDSAKVAMLIESTEQFQASSGIAIQRGPNEVAECDFERLPLATRTKLLILQEHGVLRLRKSEPEEREPGTHRAK
Ga0247737_11654681	3300023074	Plant Litter	SVLHEVTMLIESTEQFQASTGIAIQRGPNEVAESDFERLPLATRTKLRILQEHGVLRLRPSDAEKLEARDNRDK
Ga0247756_10546802	3300023078	Plant Litter	STEQFQAATGIAIQRGENEVAESDFESLPLATRTKLRILQEHGVLRVRPSQAETRDPAADRSK
Ga0247740_100063114	3300023092	Plant Litter	MLIESTEQFQAAAGIAIQRGPNEVPESDFEQLPVATRTKLRILQEHGVLRLRPSNPDEREARTGEGK
Ga0247757_100966542	3300023097	Plant Litter	MLIESTEEFLASTGMAIQRGPNEVAESDFERLPLSTRTKLRILQEHGVLRLRPSHEQKPELC
Ga0247796_11238181	3300023261	Soil	MLIESTEAFLAATGIAIQRGPNEVAESDFESLPLATRTKLRILQEHGVLRLRPGNPQKREPRSEPEE
Ga0247772_1000018143	3300023264	Plant Litter	MLIESTEQFQASTGIAIQRGENEVAESDFESLPLATRTKLRILQEHGVLRVRASEAEKPAPSAEQNK
Ga0247780_11062851	3300023265	Plant Litter	MLIESTEQFQASTGIAIQRGPNEVAESDFERLPLATRTKLRILQEHGVLRLHPGEAKKPAPDAEREK
Ga0247773_10370591	3300023269	Plant Litter	QFQAAAGVAIQRGPNEVTESDFESLPLATRTKLLILQEHGVVRLRPSDAQKPDPRSEPDK
Ga0247773_10540152	3300023269	Plant Litter	MLIESTEQFQASTGIAIQRGPNEVTESDFERLPLATRTKLRILQEHGVLRLHPSEAEKAKVRAEQAK
Ga0207695_103526112	3300025913	Corn Rhizosphere	MLIESTEQFQASAAIEIRRGPNEVDESDFERLPVATRTKLRILQEHGVLRLRPSETEKR
Ga0207686_112097632	3300025934	Miscanthus Rhizosphere	MLIESTEQFQASTGIAIQRGPNEVTESDFERLPLATRTKLRILQEHGVLRLHPSGPEKPEARSDRDK
Ga0207674_109410731	3300026116	Corn Rhizosphere	MLIESTEQFQASAAIEIRRGPNEVDESDFERLPVATRTKLRILQEHGVLCLRPSETEKREPR
Ga0207683_114163331	3300026121	Miscanthus Rhizosphere	MLIESTEEFQASTGIAIQRGKNEVAESDFEQLPLATRTKLRILQEHGVLRLRPSDPKK
Ga0302166_100221172	3300028652	Fen	MLIESTEQFQAGAAIAIRRGRNEVAERDFAELPESTRIKLRILQEHGVLRVQANDAELRTTPNK
Ga0302166_101084261	3300028652	Fen	MLIESTEQFQASTAIAIQRGPNEVAESDFESLSLATRTKLRILQEHGVLRLRPSDPEKPELGADQAKISPR
Ga0302254_100639802	3300028870	Fen	QVAMLIESTEQFQASTAIAIQRGPNEVAESDFESLSLATRTKLRILQEHGVLRLRPSDPEKPELGADQAKISPR
Ga0311347_107949052	3300029923	Fen	AGAAMAIRRGPNEVAESDYEGLSEAARRKLRILQEHGVLRLQPSDAQVPAKPSK
Ga0311334_101836412	3300029987	Fen	MLIESTEQFQASAGIAIQRGANEVAESDFEQLPVATRTKLRILQEHGVLRLRPSEGEQPDPSAGRDE
Ga0311334_103096802	3300029987	Fen	MLIESTEQFQASAAIAIRRGPNEVDEVDFERLPVATRTKLRILQEHGVLRLRPSEKRAAQDK
Ga0311334_107627472	3300029987	Fen	MLIESTEQFQAGAAIAIQRGRNEVAERDFAELPESTRIKLRILQEHGVLRVQANDAELRTTPNK
Ga0311336_101039973	3300029990	Fen	MLIESTEQFQAGAAIAIRRGRNEVAERDFVELPESTRIKLRILQEHGVLRVQANDAELRTTPNK
Ga0302272_10450131	3300030001	Bog	STAIAIQRGPNEVAESDFESLSLATRTKLRILQEHGVLRLRPSDPEKPELGADQAKISPR
Ga0311348_106651531	3300030019	Fen	MLIESTEQFQAGAAIAIRRGRNEVAERDFAELPESTRIKLRILQEHGVLRVQAN
Ga0311333_102266743	3300030114	Fen	STDQFQAGAAIAIRRGRNEVAERDFAELPESTRIKLRILQEHGVLRVQANDAELRTTPNK
Ga0311349_110767552	3300030294	Fen	GAAIAIRRGRNEVAERDFAELPESTRIKLRILQEHGVLRVQANDAELRTTPNK
Ga0311335_102803512	3300030838	Fen	STAIAIQRGPNEVAESDFESLSLATRTKLRILQEHGVLRLRPSDPEKPELRADQAKISPR
Ga0308183_10287342	3300030988	Soil	MLIESTEQFQASAAIEIRRGPNELAESDFEGLPLATRTKLRILQEHGVVRLRPSAASKSPALAEK
Ga0302323_1011269472	3300031232	Fen	MLIESTEQFQAATGIAIQRGENEVAESDFESLPLATRTKLRILQEHGVLRVRPSEAKAREPGADGSK
Ga0302323_1032925121	3300031232	Fen	VIAMLIESTEQFQASAGIAIRRGANEVTESDYERLSVATRTKLRILQEHGVLRLLPL
Ga0307513_100239872	3300031456	Ectomycorrhiza	MLIESTEQFQASAAIAIRRGPNEVAESDYERLPVATRTKLRILQEHGVLRLRPSNAEQRPTQDK
Ga0302321_1004260892	3300031726	Fen	MLIESTEQFQASAAIAIRRGPNEVDEVDFERLPAATRTKLRILQEHGVLRLRPSEKRAAQDK
Ga0302321_1014275872	3300031726	Fen	MLIESTEQFQAGAAMAIRRGPNEVAESDYEGLSEAARRKLRILQEHGVLRLQPSDAQVPAKPSK
Ga0302321_1024476021	3300031726	Fen	VIAMLIESTEQFQASAGIAIRRGANEVTESDYERLSVATRTKLRILQEHGVLRLLPLADPKRAER
Ga0302322_1000947302	3300031902	Fen	MLIESTEQFQASAGIAIQRGANEVAASDFEQLPLATRTKLRILQEHGVLRLRPSEGEQADPSAVRDE
Ga0311367_100799253	3300031918	Fen	MLIESTEQFQASTAIAIQRGPNEVAESDFESLSLATRTKLRILQEHGVLRLRPSDPEKPELGADQAKIS
Ga0308175_1004144671	3300031938	Soil	MLIESTEQFQASIGIAIQRGANEVAESDFEKLPLATRTKLRILQEHGVLRLRPSVTEK
Ga0315912_100054622	3300032157	Soil	MLIESTEQFQASSGIAIQRGPNEVAESDFESLPQATRTKLRILQEHGVLRLHPSGAKKAETQVPPKEEK
Ga0315912_104142032	3300032157	Soil	MLIESTEQFHASTGIAIQRGANEVAETDLEHLPLATRTKLRILQEHGVVRVHESGAGTRESLADRSLKAREARTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098300

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences