Metagenome / Metatranscriptome Family F098254

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F098254
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	40 residues
Representative Sequence	MLILAGGGRGFPLDYDELERWTRVGYERGMRSRKGER
Number of Associated Samples	74
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	28.71 %
% of genes near scaffold ends (potentially truncated)	60.58 %
% of genes from short scaffolds (< 2000 bps)	77.88 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (60.577 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (29.808 % of family members)
Environment Ontology (ENVO)	Unclassified (35.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.77% β-sheet: 0.00% Coil/Unstructured: 69.23%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01872	RibD_C	1.92
PF13474	SnoaL_3	1.92
PF00011	HSP20	0.96
PF13185	GAF_2	0.96
PF13396	PLDc_N	0.96
PF14333	DUF4389	0.96
PF12728	HTH_17	0.96
PF00589	Phage_integrase	0.96
PF12852	Cupin_6	0.96
PF01695	IstB_IS21	0.96
PF03861	ANTAR	0.96
PF13424	TPR_12	0.96
PF12762	DDE_Tnp_IS1595	0.96
PF13539	Peptidase_M15_4	0.96
PF07553	Lipoprotein_Ltp	0.96
PF02894	GFO_IDH_MocA_C	0.96
PF08335	GlnD_UR_UTase	0.96
PF00892	EamA	0.96
PF11611	DUF4352	0.96
PF13472	Lipase_GDSL_2	0.96
PF01641	SelR	0.96
PF01019	G_glu_transpept	0.96
PF04075	F420H2_quin_red	0.96
PF11158	DUF2938	0.96
PF12680	SnoaL_2	0.96
PF14325	DUF4383	0.96
PF11746	DUF3303	0.96
PF00149	Metallophos	0.96
PF14690	zf-ISL3	0.96
PF07452	CHRD	0.96
PF03462	PCRF	0.96
PF00106	adh_short	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.92
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.92
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	0.96
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.96
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.96
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	0.96
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.96
COG2844	UTP:GlnB (protein PII) uridylyltransferase	Signal transduction mechanisms [T]	0.96
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
All Organisms	root	All Organisms	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
cellular organisms	root	All Organisms → cellular organisms	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	32.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	21.15 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.96 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	9.62 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.96 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	1.92 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.92 %
unclassified Propionibacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales	0.96 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.96 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.96 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	0.96 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.96 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1.92 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.96 %
Humibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Humibacillus	0.96 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	0.96 %
Arsenicicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Arsenicicoccus	0.96 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	0.96 %
Microlunatus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	0.96 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.96 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Microlunatus kandeliicorticis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus kandeliicorticis	0.96 %
Humibacillus xanthopallidus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Humibacillus → Humibacillus xanthopallidus	0.96 %
unclassified Kribbella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella	0.96 %
unclassified Arsenicicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Arsenicicoccus → unclassified Arsenicicoccus	0.96 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	0.96 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.96 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	0.96 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.96 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Arsenicicoccus sp. oral taxon 190	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Arsenicicoccus → unclassified Arsenicicoccus → Arsenicicoccus sp. oral taxon 190	0.96 %
Kribbella sp. VKM Ac-2527	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2527	0.96 %
Microlunatus kandeliicorticis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus kandeliicorticis	0.96 %
Humibacillus xanthopallidus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Humibacillus → Humibacillus xanthopallidus	0.96 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	0.96 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.96 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	0.96 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.96 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_12239547	Not Available	579	Open in IMG/M
3300000559\|F14TC_103201834	Not Available	720	Open in IMG/M
3300000956\|JGI10216J12902_105069022	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300000956\|JGI10216J12902_106578783	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300000956\|JGI10216J12902_126225228	Not Available	759	Open in IMG/M
3300001431\|F14TB_100754503	Not Available	1864	Open in IMG/M
3300002568\|C688J35102_120988392	All Organisms → cellular organisms → Bacteria	8605	Open in IMG/M
3300005339\|Ga0070660_101421735	All Organisms → cellular organisms → Bacteria → Terrabacteria group	589	Open in IMG/M
3300005937\|Ga0081455_10011271	All Organisms → cellular organisms → Bacteria	8997	Open in IMG/M
3300005937\|Ga0081455_10017320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6915	Open in IMG/M
3300005937\|Ga0081455_10020007	All Organisms → cellular organisms → Bacteria	6318	Open in IMG/M
3300005937\|Ga0081455_10095105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2405	Open in IMG/M
3300005937\|Ga0081455_10278575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1209	Open in IMG/M
3300005981\|Ga0081538_10106711	Not Available	1389	Open in IMG/M
3300006581\|Ga0074048_11221988	Not Available	538	Open in IMG/M
3300006847\|Ga0075431_101311810	Not Available	685	Open in IMG/M
3300006854\|Ga0075425_102306348	Not Available	598	Open in IMG/M
3300006854\|Ga0075425_102746287	Not Available	542	Open in IMG/M
3300006876\|Ga0079217_10284979	Not Available	905	Open in IMG/M
3300006903\|Ga0075426_10007970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7552	Open in IMG/M
3300006904\|Ga0075424_100947621	Not Available	918	Open in IMG/M
3300007004\|Ga0079218_10386948	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300007004\|Ga0079218_10692549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	954	Open in IMG/M
3300007004\|Ga0079218_13432798	Not Available	537	Open in IMG/M
3300007076\|Ga0075435_100975293	Not Available	740	Open in IMG/M
3300009094\|Ga0111539_13135112	Not Available	533	Open in IMG/M
3300009100\|Ga0075418_12539722	Not Available	559	Open in IMG/M
3300009789\|Ga0126307_11354948	Not Available	576	Open in IMG/M
3300009840\|Ga0126313_10051864	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2897	Open in IMG/M
3300010036\|Ga0126305_10471178	Not Available	835	Open in IMG/M
3300010037\|Ga0126304_10715701	Not Available	677	Open in IMG/M
3300010038\|Ga0126315_10152345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1369	Open in IMG/M
3300010040\|Ga0126308_11276936	Not Available	521	Open in IMG/M
3300010041\|Ga0126312_11128919	Not Available	576	Open in IMG/M
3300010042\|Ga0126314_10347163	Not Available	1064	Open in IMG/M
3300010042\|Ga0126314_10839585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	677	Open in IMG/M
3300010042\|Ga0126314_11012887	Not Available	617	Open in IMG/M
3300010042\|Ga0126314_11040308	All Organisms → cellular organisms → Bacteria → Terrabacteria group	608	Open in IMG/M
3300010044\|Ga0126310_11331884	Not Available	582	Open in IMG/M
3300010166\|Ga0126306_10321486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	1196	Open in IMG/M
3300010166\|Ga0126306_10547985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	918	Open in IMG/M
3300010166\|Ga0126306_11368720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	585	Open in IMG/M
3300010166\|Ga0126306_11813758	Not Available	511	Open in IMG/M
3300010999\|Ga0138505_100000302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	3515	Open in IMG/M
3300010999\|Ga0138505_100038110	Not Available	673	Open in IMG/M
3300011003\|Ga0138514_100086450	Not Available	670	Open in IMG/M
3300011332\|Ga0126317_10022090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	718	Open in IMG/M
3300012212\|Ga0150985_114878897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2716	Open in IMG/M
3300012469\|Ga0150984_110999611	Not Available	504	Open in IMG/M
3300012481\|Ga0157320_1028508	Not Available	551	Open in IMG/M
3300014497\|Ga0182008_10109354	Not Available	1369	Open in IMG/M
3300014497\|Ga0182008_10843944	Not Available	535	Open in IMG/M
3300018028\|Ga0184608_10001265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7323	Open in IMG/M
3300018031\|Ga0184634_10032327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2077	Open in IMG/M
3300018054\|Ga0184621_10107119	Not Available	992	Open in IMG/M
3300018075\|Ga0184632_10387243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2527	590	Open in IMG/M
3300018082\|Ga0184639_10310924	Not Available	827	Open in IMG/M
3300018466\|Ga0190268_10402932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	881	Open in IMG/M
3300019767\|Ga0190267_10088014	Not Available	1196	Open in IMG/M
3300019767\|Ga0190267_11368235	Not Available	534	Open in IMG/M
3300019869\|Ga0193705_1007322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2408	Open in IMG/M
3300020003\|Ga0193739_1003198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	4465	Open in IMG/M
3300022756\|Ga0222622_10065458	Not Available	2117	Open in IMG/M
3300022883\|Ga0247786_1116474	Not Available	586	Open in IMG/M
3300027907\|Ga0207428_11238617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300028705\|Ga0307276_10093230	Not Available	721	Open in IMG/M
3300028714\|Ga0307309_10189623	Not Available	537	Open in IMG/M
3300028718\|Ga0307307_10314396	Not Available	505	Open in IMG/M
3300028721\|Ga0307315_10003190	Not Available	3982	Open in IMG/M
3300028744\|Ga0307318_10251619	Not Available	615	Open in IMG/M
3300028754\|Ga0307297_10029874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Arsenicicoccus → unclassified Arsenicicoccus → Arsenicicoccus sp. oral taxon 190	1594	Open in IMG/M
3300028754\|Ga0307297_10232065	Not Available	652	Open in IMG/M
3300028784\|Ga0307282_10231462	Not Available	886	Open in IMG/M
3300028791\|Ga0307290_10192634	Not Available	747	Open in IMG/M
3300028796\|Ga0307287_10027645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	2011	Open in IMG/M
3300028796\|Ga0307287_10085631	Not Available	1184	Open in IMG/M
3300028799\|Ga0307284_10224473	Not Available	742	Open in IMG/M
3300028811\|Ga0307292_10007820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3617	Open in IMG/M
3300028811\|Ga0307292_10393268	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300028819\|Ga0307296_10037451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2560	Open in IMG/M
3300028819\|Ga0307296_10262742	Not Available	939	Open in IMG/M
3300028828\|Ga0307312_10252320	Not Available	1142	Open in IMG/M
3300028875\|Ga0307289_10218246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	784	Open in IMG/M
3300028881\|Ga0307277_10560422	Not Available	513	Open in IMG/M
3300028889\|Ga0247827_10601170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Humibacillus → Humibacillus xanthopallidus	704	Open in IMG/M
3300030496\|Ga0268240_10188633	Not Available	522	Open in IMG/M
3300030496\|Ga0268240_10198098	Not Available	512	Open in IMG/M
3300030902\|Ga0308202_1075429	Not Available	661	Open in IMG/M
3300030994\|Ga0308153_105903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	690	Open in IMG/M
3300031058\|Ga0308189_10479544	Not Available	532	Open in IMG/M
3300031091\|Ga0308201_10361270	Not Available	535	Open in IMG/M
3300031091\|Ga0308201_10366951	Not Available	532	Open in IMG/M
3300031099\|Ga0308181_1033236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus kandeliicorticis	906	Open in IMG/M
3300031901\|Ga0307406_10024660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3594	Open in IMG/M
3300031995\|Ga0307409_100016460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4892	Open in IMG/M
3300031995\|Ga0307409_100272397	Not Available	1560	Open in IMG/M
3300031995\|Ga0307409_100405740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1303	Open in IMG/M
3300031995\|Ga0307409_102256749	Not Available	574	Open in IMG/M
3300032126\|Ga0307415_101694358	Not Available	609	Open in IMG/M
3300032126\|Ga0307415_102037234	Not Available	559	Open in IMG/M
3300033811\|Ga0364924_152891	Not Available	545	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.12%
Host-Associated	Host-Associated	27.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.38%
Plants	Host-Associated → Plants	27.88%
Aquatic	Environmental → Aquatic	6.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.73%
Sediment	Environmental → Aquatic → Sediment	5.77%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.88%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.77%
Loam	Environmental → Terrestrial → Soil → Loam	3.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	29.81%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	16.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	7.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.81%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.88%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030994	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_142 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_122395472	3300000550	Soil	MGPVLIMAGGGDGTPPDYDQLERWTRVGYERGMRSIK
F14TC_1032018341	3300000559	Soil	ILAGNGRGLPFDYDELERWTRVGYERGMRSRRGER*
JGI10216J12902_1050690222	3300000956	Soil	LIVAGLLIMASGHDGKPMDYEALERWSRVGSEQGIRFRKGER*
JGI10216J12902_1065787831	3300000956	Soil	MLIMAGGHDGKPLDFGELERWTRIGYERGMAVRRVER*
JGI10216J12902_1262252282	3300000956	Soil	MVIAAGDGRGLPMDYDELRRWTRVGYERGMRSRKGDHEPAEGG*
F14TB_1007545032	3300001431	Soil	MLIMAGGSRGLPLDYDKLERWTHGSGFERSTRLRHEER*
C688J35102_1209883927	3300002568	Soil	VGYELVAAGMLIMAGGHDGKPLDYEELERWTRIGYERGVRSRKGER*
Ga0070660_1014217352	3300005339	Corn Rhizosphere	IAAGMMILAGGGRGLPLDYDELERWTRVGFERGTRSRNGER*
Ga0081455_100112716	3300005937	Tabebuia Heterophylla Rhizosphere	MAAGRDSGPLDYDELERWTRVSYERGMRSRKGER*
Ga0081455_1001732012	3300005937	Tabebuia Heterophylla Rhizosphere	MIILAGSHRGLPFDYDELERWTRIGFERGMRSHKGER*
Ga0081455_100200074	3300005937	Tabebuia Heterophylla Rhizosphere	MAGGSRGLPLDYDKLERWTRGSGFERGPRLRHEER*
Ga0081455_100951054	3300005937	Tabebuia Heterophylla Rhizosphere	MLIVAANHRDLPFDYDELERWTRVGYERGMRSRKGER*
Ga0081455_102785752	3300005937	Tabebuia Heterophylla Rhizosphere	MLIMAGGNGTPLDYSELERRTRVGYERGMRSRKSEREAIC*
Ga0081538_101067113	3300005981	Tabebuia Heterophylla Rhizosphere	SRNVDHGHDGKPLDYKELERWTRVGYERGMRSRKGER*
Ga0074048_112219882	3300006581	Soil	MLILAGGGNGTPLDYGELERWTRVGYERGVRSRKGQR*
Ga0075431_1013118102	3300006847	Populus Rhizosphere	HELIGAGMLILAGDGRGLPFDYDELERWTQVGYERGMRSRKGER*
Ga0075425_1023063483	3300006854	Populus Rhizosphere	GMLILAGGGNGTPLDYRELERWTRVGYERGMRFRKGER*
Ga0075425_1027462872	3300006854	Populus Rhizosphere	AGMLIMAAGRDGMPLDFQALERWTRVGYERALKSGHGRH*
Ga0079217_102849791	3300006876	Agricultural Soil	MAGGHDGKPLDYGELERWTRVGYERGMRSRKGER*
Ga0075426_100079705	3300006903	Populus Rhizosphere	MNPGRFSMLILAGGGNSTPLDYRELERWTRLGYERGMKSRKGER*
Ga0075424_1009476213	3300006904	Populus Rhizosphere	IAAGMMILAGGGRGLPLDYDELERWTRVGFERGRRSRNGER*
Ga0079218_103869482	3300007004	Agricultural Soil	MRLVSWNILAGGGRGLPLDYDELERWTRVGFERGTRSRRGER*
Ga0079218_106925491	3300007004	Agricultural Soil	MLIAAAGREGKPLDYDELERWTRIGYERGVRSRKGER*
Ga0079218_134327982	3300007004	Agricultural Soil	MLILAGGGRGFPLDYDELERWTRVGYERGMRSRKGER*
Ga0075435_1009752932	3300007076	Populus Rhizosphere	AAMLILAGGGRGFLDYGELERWTRVGYERGMRSRKR*
Ga0111539_131351121	3300009094	Populus Rhizosphere	AAGMLIMAAGRDGMPLDFQALERWTRVGYERALKSGHGRH*
Ga0075418_125397222	3300009100	Populus Rhizosphere	AGMLILAGGGRGVPLDYAELERWTRVGYERGMKSSKGER*
Ga0126307_113549482	3300009789	Serpentine Soil	LILAGGGNGKPLDYGELERWTRVGYERGMRSRKGER*
Ga0126313_100518645	3300009840	Serpentine Soil	MLILAGGGQGLPLDYEELERWTRVGFERGMSSRKGER*
Ga0126313_118224151	3300009840	Serpentine Soil	MLIAAGRYDGEPLDYADMERWTRVGFERGTRFRKGER*
Ga0126305_104711782	3300010036	Serpentine Soil	GMLIMAGGGNGTPLDYDELERWTRVRYERGMRSRKGER*
Ga0126304_107157011	3300010037	Serpentine Soil	VGHELLAAAMLILAGGGHGVPLDYRELERWTRIGYERGL
Ga0126315_101523451	3300010038	Serpentine Soil	MLIAAGGYDGEPLDYADMERWTRVGFERGTRFRKGER*
Ga0126308_112769361	3300010040	Serpentine Soil	IGAGMLILAGGGQEFPLDYDDLERWTRVGFERGMRSRKGER*
Ga0126312_111289191	3300010041	Serpentine Soil	ALLILAGGGNGVPLNYGDLERWTRIGYERGMRSRKGER*
Ga0126314_103471631	3300010042	Serpentine Soil	GMLILAGGGEGFPLDYDELERWTRVGFERGMRSRMGER*
Ga0126314_108395852	3300010042	Serpentine Soil	AGMLIVAAGDRGLPMDYDELERWTRVGYERGMRSRHGER*
Ga0126314_110128872	3300010042	Serpentine Soil	ILAGGGEGFPLDYDELERWTRVGYDRGMRSRKGER*
Ga0126314_110403082	3300010042	Serpentine Soil	MLIMAGGGNGKPLDYDELERWTRVGFERGMRSRKGER*
Ga0126310_113318841	3300010044	Serpentine Soil	MLILAGGGNGVPLNYGELERWTRVGYERGRRSRKGER*
Ga0126306_103214862	3300010166	Serpentine Soil	GYELIGAGMLILAGGGRGLPMDYDELERWTRVGYERGMRSRKGER*
Ga0126306_105479851	3300010166	Serpentine Soil	MAGGHDGKPLDFGELERWTRVGYERGMRFRKGER*
Ga0126306_113687201	3300010166	Serpentine Soil	YELVGAGMLILAGDGRGLPFDYDELERWTRVGYERGMRSRKGER*
Ga0126306_118137582	3300010166	Serpentine Soil	MVILAGGGKGVPLDYGELERWTRVGFERGRRPRHGER*
Ga0138505_1000003021	3300010999	Soil	LIMASGHEGKPLDYEALERWTRVGFERGMRFRKGER*
Ga0138505_1000381102	3300010999	Soil	YELIGAGMLIAAGDGRGFPLDYDELERSTRVGYERGIRSRKGER*
Ga0138514_1000864502	3300011003	Soil	MFILAGGGRGLPLDYDELERWTQVGFERGMRSRKGER*
Ga0126317_100220901	3300011332	Soil	GMLIMASGHDGKPMDYEDLERWTRVGFERGTRFRKCER*
Ga0150985_1148788976	3300012212	Avena Fatua Rhizosphere	GYELIGAGMLTLAGGGRGTPLDYHQLERCTRVGYERGMWSRKGER*
Ga0150984_1109996111	3300012469	Avena Fatua Rhizosphere	LIMAGGYDGKPLNYTELERWTRVGYERGMRFRKGER*
Ga0157320_10285082	3300012481	Arabidopsis Rhizosphere	AAGMLIMAAGRDGTPLDFQALERWTRVGYERALKSGHGPQ*
Ga0182008_101093543	3300014497	Rhizosphere	MLIMAGGYDGKPLDYGELERWTRVGYERGMRSRKGER*
Ga0182008_108439442	3300014497	Rhizosphere	AAGMLIMAGGDDGKPLDFDALGRWSRVGFERGTRFRKGER*
Ga0184608_100012655	3300018028	Groundwater Sediment	VGYELIGAGMLILAGGSRGLPMDYDELERWTRVGFERGMRSRKGER
Ga0184634_100323273	3300018031	Groundwater Sediment	VGYELIGAGMLILAGGSRGLPMDYDELERWTRVGFERGMRSRKGGR
Ga0184621_101071191	3300018054	Groundwater Sediment	LVAAGMLIMAGSGNGKPLDYDELERWTRVGYERGMRSRKGER
Ga0184632_103872431	3300018075	Groundwater Sediment	LIAGMMILAGGGRGVPLDYGELERWTRVGYERGTRSRHGER
Ga0184639_103109243	3300018082	Groundwater Sediment	MILAGGGRGLPLDYDELERWTRVGFERGTRSRNGEGDVRCGIRACSI
Ga0190268_104029322	3300018466	Soil	GYELVAAGMLIMASGHEGKPLDYQALERWTRVGYERGMRFRKAER
Ga0190267_100880142	3300019767	Soil	MLIMAGGHDGNPLGFEALERWTRVGYERGLRSRKGER
Ga0190267_113682352	3300019767	Soil	GMLIMAGGHDGKPFDFGELERWTRVGYERGIRFRKGER
Ga0193705_10073222	3300019869	Soil	MLIMAAGHEGKPLDYDELERWTRVGYERGMKWRKGER
Ga0193739_10031984	3300020003	Soil	MLIAAGAGRGLPMANGELQRRTRVGYERGTRSGKGER
Ga0222622_100654582	3300022756	Groundwater Sediment	MLIMAGGGSGKPLDFEALERWTRVGYERGMRSRKGER
Ga0247786_11164742	3300022883	Soil	AGMLIMASGHDGKPLDFEALERWTRFGYERGMRSRKGVR
Ga0207428_112386171	3300027907	Populus Rhizosphere	GMLILAGGGNGTPLDHRELERWTRLGYERGMRFRKGER
Ga0307276_100932302	3300028705	Soil	VGYELVSAGMLILARDGRGLPFDYDELERWTRTGYERGMTSRKGER
Ga0307303_100048241	3300028713	Soil	VGYELIGAGMLILAGGGRGLPMDYDELERWTRVGFERGMRLRKGER
Ga0307309_101896232	3300028714	Soil	MFILAGGGRGLPMDYDELERWTRVGFERGMRLRKGER
Ga0307307_103143961	3300028718	Soil	TELVAAGMLIIAAGHDGKPLDYEALERWTRVGYERGMRSRKGER
Ga0307315_100031901	3300028721	Soil	MILAGGGRGLPLDYDELERWTRVGFERGTRSRNGEGDVRCGIRAC
Ga0307318_102516192	3300028744	Soil	MLILAGDGRSLPLDYGELERWSRVGYEWETAMHRGER
Ga0307297_100298742	3300028754	Soil	AAGMLILAGGGRGLPLDYDELERWTRVGFERGTRWRNGER
Ga0307297_102320653	3300028754	Soil	MLIMAGGHDGKPFDYDELERWTRVGFDRGTRFRKGER
Ga0307282_102314622	3300028784	Soil	ITAGMLIMASGGNGNPLDYDELERCTRIGYERGMRSRHGER
Ga0307290_101926343	3300028791	Soil	QITAGMLIMASGGNGNPLDYDELERCTRIGYERGMRSRHGER
Ga0307287_100276451	3300028796	Soil	SGMLIMAAGHEGKPLDYQALERWTRVGFERGMRFRKGER
Ga0307287_100856311	3300028796	Soil	AGYELIAAGMMILAGGGRGLPLDYDELERWTRVGYERGTRSRNGER
Ga0307284_102244732	3300028799	Soil	IMASGGNGNPLDYDELERCTRIGYERGMRSRHGER
Ga0307292_100078201	3300028811	Soil	ELLGAGMLILAGGGRGLPMDYDELERWTRVGFERGMRSRKGER
Ga0307292_103932682	3300028811	Soil	MLIMAGGHDGKPLDYDALERWTRVGYERGMRSRKGER
Ga0307296_100374511	3300028819	Soil	VGYELIGAGMLILAGGSRGLPMDYDELERWTRVGFERGMRSRK
Ga0307296_102627421	3300028819	Soil	MILAGGGRGLPLDYDELERWTRVGFERGTRSRNGEGDVRCGI
Ga0307312_102523203	3300028828	Soil	MLILAGNGRGLPFDYDELERWTRVGYERGMRSRKGE
Ga0307289_102182461	3300028875	Soil	GHELIAAGMLILAAGGLGRPLDYDELERWTRVGYERGMAFRHREG
Ga0307277_105604221	3300028881	Soil	LDHGAVRGGNGTPLDYDELERWTRVGYERGMRSRKGER
Ga0247827_106011701	3300028889	Soil	GMMILAGGGRGLPLDYEELERWTRVGFERGTRSRNGER
Ga0268240_101886332	3300030496	Soil	MLIMAGGRDGKPFDFNELERWTRVGYERGMRSRKGER
Ga0268240_101980981	3300030496	Soil	GHELIAAGMLIMAGGHDGKCFDFDELERWTRVGYERGTRSRKGER
Ga0308202_10754291	3300030902	Soil	GYELVAAGMLIMAGGHNGRPLGYAALERWTRVGYERGMRSRKGQR
Ga0308153_1059032	3300030994	Soil	VGYELIGAGMLILAGGSRGLPMDYDELERWTRVGFERGMRLRKGER
Ga0308189_104795442	3300031058	Soil	MLIMAGGHDGKPFDYEELERWTRVGFERGTRFRKGER
Ga0308201_103612703	3300031091	Soil	MILAGGGRGLPLDYDELERWTRVGFERGTRSRNGEGDV
Ga0308201_103669512	3300031091	Soil	AGYELVAAGMLIMAGGHNGRPLGYAALERWTRVGYERGMRSRKGQR
Ga0308181_10332361	3300031099	Soil	VGYELIGAGMLILAGGSRGLPMDYDELERWTREGFERGMRSRKGGR
Ga0307406_100246607	3300031901	Rhizosphere	MLILAGGGRGFPLDYDELERWTRVGYERRMRSRKGER
Ga0307409_1000164602	3300031995	Rhizosphere	MLILAGGGRGFPLDYDELERWTRVGYERAMRSRKGER
Ga0307409_1002723972	3300031995	Rhizosphere	MLIMAGGGNGKPLDYEELERWTRVGYERGTRSRQGEK
Ga0307409_1004057403	3300031995	Rhizosphere	ADSCRRGQGFLLDYDELERWTRVGYERGMRSRKGER
Ga0307409_1004667143	3300031995	Rhizosphere	HMGYELVAAGMMIMAGGHDSKPFDFEALERWTRVGYERGMRSRKGER
Ga0307409_1022567491	3300031995	Rhizosphere	GAGMLILAGGGRGFPLDYDELERWTRVGYERGMRSRKGER
Ga0307415_1016943582	3300032126	Rhizosphere	AGMLIMAGGHNGKPLDYDELERWTQVGFERGMRSRRGER
Ga0307415_1020372342	3300032126	Rhizosphere	TAGMLILAGGGNGTPLDYNELERWTRVGYERGMRSPNGER
Ga0364924_152891_18_131	3300033811	Sediment	MLILAGGGKGVPLDYRELERWTRVGYERGMRSRLGER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098254

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences