Metagenome / Metatranscriptome Family F098236

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F098236
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	160 residues
Representative Sequence	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID
Number of Associated Samples	85
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.27 %
% of genes near scaffold ends (potentially truncated)	41.35 %
% of genes from short scaffolds (< 2000 bps)	75.96 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.86

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (89.423 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.192 % of family members)
Environment Ontology (ENVO)	Unclassified (28.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.462 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 1.52% β-sheet: 60.41% Coil/Unstructured: 38.07%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.86
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.86
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
f.4.4.2: OMPT-like	d1k24a_	1k24	0.63
f.4.1.1: OMPA-like	d1p4ta_	1p4t	0.63
f.4.4.2: OMPT-like	d1k24a_	1k24	0.63
f.4.1.1: OMPA-like	d1p4ta_	1p4t	0.63
b.159.2.1: SO1590-like	d2q03a1	2q03	0.62
b.159.2.1: SO1590-like	d2q03a1	2q03	0.62
f.4.5.1: Autotransporter	d1uynx_	1uyn	0.6
f.4.1.4: OMPA-like	d5b5eo_	5b5e	0.6
f.4.5.1: Autotransporter	d1uynx_	1uyn	0.6
f.4.1.4: OMPA-like	d5b5eo_	5b5e	0.6

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF04392	ABC_sub_bind	4.85
PF00005	ABC_tran	2.91
PF13193	AMP-binding_C	2.91
PF13847	Methyltransf_31	1.94
PF01494	FAD_binding_3	1.94
PF02661	Fic	1.94
PF00296	Bac_luciferase	1.94
PF13495	Phage_int_SAM_4	1.94
PF12773	DZR	0.97
PF02515	CoA_transf_3	0.97
PF14499	DUF4437	0.97
PF02735	Ku	0.97
PF01548	DEDD_Tnp_IS110	0.97
PF01103	Omp85	0.97
PF05973	Gp49	0.97
PF00857	Isochorismatase	0.97
PF10604	Polyketide_cyc2	0.97
PF05685	Uma2	0.97
PF07973	tRNA_SAD	0.97
PF00144	Beta-lactamase	0.97
PF13517	FG-GAP_3	0.97
PF03992	ABM	0.97
PF00589	Phage_integrase	0.97
PF03476	MOSC_N	0.97
PF01315	Ald_Xan_dh_C	0.97
PF02836	Glyco_hydro_2_C	0.97
PF02900	LigB	0.97
PF12680	SnoaL_2	0.97
PF02608	Bmp	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.85
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	3.88
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	1.94
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	1.94
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.94
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.94
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.97
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.97
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97
COG3250	Beta-galactosidase/beta-glucuronidase	Carbohydrate transport and metabolism [G]	0.97
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.97
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.97
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.97
COG1744	Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN	Signal transduction mechanisms [T]	0.97
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.97
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.97
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.97
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.42 %
Unclassified	root	N/A	10.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.42 %
Unclassified	root	N/A	10.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.42 %
Unclassified	root	N/A	10.58 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	67.31 %
Unclassified	root	N/A	10.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	59.62 %
Unclassified	root	N/A	10.58 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	55.77 %
Unclassified	root	N/A	10.58 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	55.77 %
Unclassified	root	N/A	10.58 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.96 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	55.77 %
Unclassified	root	N/A	10.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26	0.96 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10842277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1011	Open in IMG/M
3300000789\|JGI1027J11758_12612473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	780	Open in IMG/M
3300000956\|JGI10216J12902_103077490	All Organisms → cellular organisms → Bacteria	2033	Open in IMG/M
3300000956\|JGI10216J12902_127667375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300001431\|F14TB_108679141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300002908\|JGI25382J43887_10330645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300004019\|Ga0055439_10251830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300004022\|Ga0055432_10133231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300004150\|Ga0055520_10176712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300004463\|Ga0063356_104827204	Not Available	579	Open in IMG/M
3300004480\|Ga0062592_102581111	Not Available	512	Open in IMG/M
3300005184\|Ga0066671_10294113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1016	Open in IMG/M
3300005445\|Ga0070708_101504607	Not Available	627	Open in IMG/M
3300005468\|Ga0070707_100586015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1078	Open in IMG/M
3300005471\|Ga0070698_100336081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1442	Open in IMG/M
3300005566\|Ga0066693_10093431	All Organisms → cellular organisms → Bacteria → Proteobacteria	1076	Open in IMG/M
3300005937\|Ga0081455_10849645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300006031\|Ga0066651_10356380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	784	Open in IMG/M
3300006046\|Ga0066652_100927259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	830	Open in IMG/M
3300006049\|Ga0075417_10041132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1960	Open in IMG/M
3300006794\|Ga0066658_10251465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	945	Open in IMG/M
3300006846\|Ga0075430_100349105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1222	Open in IMG/M
3300006846\|Ga0075430_100349105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1222	Open in IMG/M
3300006852\|Ga0075433_10392636	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300006854\|Ga0075425_100188794	All Organisms → cellular organisms → Bacteria	2367	Open in IMG/M
3300007255\|Ga0099791_10131162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1164	Open in IMG/M
3300009012\|Ga0066710_102387874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300009038\|Ga0099829_11148975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	643	Open in IMG/M
3300009088\|Ga0099830_10006039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7024	Open in IMG/M
3300009090\|Ga0099827_10000051	All Organisms → cellular organisms → Bacteria → Proteobacteria	34158	Open in IMG/M
3300009100\|Ga0075418_10910780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	951	Open in IMG/M
3300009100\|Ga0075418_12865760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300009100\|Ga0075418_12979306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300009147\|Ga0114129_13143576	Not Available	539	Open in IMG/M
3300009156\|Ga0111538_12281582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300009610\|Ga0105340_1175490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300009691\|Ga0114944_1030869	All Organisms → cellular organisms → Bacteria → Proteobacteria	1903	Open in IMG/M
3300009811\|Ga0105084_1049145	Not Available	745	Open in IMG/M
3300010047\|Ga0126382_11315051	Not Available	654	Open in IMG/M
3300010047\|Ga0126382_11720233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300010358\|Ga0126370_10181898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1569	Open in IMG/M
3300010362\|Ga0126377_11024885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	892	Open in IMG/M
3300010366\|Ga0126379_12110821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	665	Open in IMG/M
3300010366\|Ga0126379_13187572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300010391\|Ga0136847_12955231	All Organisms → cellular organisms → Bacteria	3660	Open in IMG/M
3300011270\|Ga0137391_10008079	All Organisms → cellular organisms → Bacteria	8274	Open in IMG/M
3300011271\|Ga0137393_10013586	All Organisms → cellular organisms → Bacteria → Proteobacteria	5741	Open in IMG/M
3300012096\|Ga0137389_10287154	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300012189\|Ga0137388_10241056	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300012204\|Ga0137374_10033332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5588	Open in IMG/M
3300012208\|Ga0137376_11542630	Not Available	555	Open in IMG/M
3300012209\|Ga0137379_10208161	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300012355\|Ga0137369_10048118	All Organisms → cellular organisms → Bacteria	3751	Open in IMG/M
3300012355\|Ga0137369_10085010	All Organisms → cellular organisms → Bacteria	2640	Open in IMG/M
3300012358\|Ga0137368_10336851	Not Available	1007	Open in IMG/M
3300012360\|Ga0137375_10570596	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300012360\|Ga0137375_10708832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	821	Open in IMG/M
3300012685\|Ga0137397_10016759	All Organisms → cellular organisms → Bacteria	5122	Open in IMG/M
3300012922\|Ga0137394_10406179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1161	Open in IMG/M
3300012930\|Ga0137407_10963937	Not Available	807	Open in IMG/M
3300012930\|Ga0137407_11920282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	565	Open in IMG/M
3300012948\|Ga0126375_10053347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2168	Open in IMG/M
3300014884\|Ga0180104_1015315	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300015259\|Ga0180085_1239245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	535	Open in IMG/M
3300018031\|Ga0184634_10089704	Not Available	1330	Open in IMG/M
3300018052\|Ga0184638_1000723	All Organisms → cellular organisms → Bacteria	9511	Open in IMG/M
3300018052\|Ga0184638_1212698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300018053\|Ga0184626_10011363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3499	Open in IMG/M
3300018053\|Ga0184626_10179582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	899	Open in IMG/M
3300018053\|Ga0184626_10270048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300018056\|Ga0184623_10317356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300018063\|Ga0184637_10099087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1794	Open in IMG/M
3300018074\|Ga0184640_10410974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300018075\|Ga0184632_10007804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4457	Open in IMG/M
3300018075\|Ga0184632_10266062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	747	Open in IMG/M
3300018076\|Ga0184609_10036183	All Organisms → cellular organisms → Bacteria	2054	Open in IMG/M
3300018076\|Ga0184609_10214728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300018078\|Ga0184612_10414131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300018079\|Ga0184627_10019868	All Organisms → cellular organisms → Bacteria	3290	Open in IMG/M
3300018079\|Ga0184627_10098462	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300018082\|Ga0184639_10164182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1179	Open in IMG/M
3300018082\|Ga0184639_10468215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300018422\|Ga0190265_10026967	All Organisms → cellular organisms → Bacteria → Proteobacteria	4702	Open in IMG/M
3300018422\|Ga0190265_11052262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	935	Open in IMG/M
3300018466\|Ga0190268_12126575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300019458\|Ga0187892_10078439	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26	2065	Open in IMG/M
3300020063\|Ga0180118_1227636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	875	Open in IMG/M
3300021073\|Ga0210378_10005168	All Organisms → cellular organisms → Bacteria	6007	Open in IMG/M
3300022563\|Ga0212128_10674891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300025922\|Ga0207646_10726054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	887	Open in IMG/M
3300026297\|Ga0209237_1008011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6334	Open in IMG/M
3300026360\|Ga0257173_1058613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300027277\|Ga0209846_1032478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	830	Open in IMG/M
3300027533\|Ga0208185_1060044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	910	Open in IMG/M
3300027846\|Ga0209180_10109692	All Organisms → cellular organisms → Bacteria → Proteobacteria	1577	Open in IMG/M
3300030606\|Ga0299906_10051189	All Organisms → cellular organisms → Bacteria	3293	Open in IMG/M
3300030620\|Ga0302046_10060076	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	3087	Open in IMG/M
3300031229\|Ga0299913_11346979	Not Available	670	Open in IMG/M
3300031720\|Ga0307469_10708830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	913	Open in IMG/M
3300031740\|Ga0307468_101496516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300031740\|Ga0307468_102574135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300033407\|Ga0214472_10002354	All Organisms → cellular organisms → Bacteria	20471	Open in IMG/M
3300033407\|Ga0214472_10902680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	788	Open in IMG/M
3300033417\|Ga0214471_10006384	All Organisms → cellular organisms → Bacteria	9118	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.46%
Host-Associated	Host-Associated	11.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.62%
Aquatic	Environmental → Aquatic	28.85%
Plants	Host-Associated → Plants	11.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.65%
Sediment	Environmental → Aquatic → Sediment	21.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.62%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Marine	Environmental → Aquatic → Marine	2.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Cave	Environmental → Terrestrial → Cave	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	21.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.62%
Loam	Environmental → Terrestrial → Soil → Loam	5.77%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.92%
Sand	Environmental → Terrestrial → Soil → Sand	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Lake	Environmental → Aquatic → Freshwater → Lake	0.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	21.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.19%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	17.31%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004150	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqC_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009691	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_108422771	3300000550	Soil	FWLDSWSDIGRIAVGMAHWGYDLQLTRYDKRDWGAERMEDMTSAEVPTGPFTCEIVLQRVRAPRFILEDRQGVTYMVARDYELAYETVLNFASGARLPIKAKLVGELNQRVIIRDAQRRPERYSGYTQGLAEISNTDGHVIFRGRYYDSRTLQPLMGDDALTPIGQGIVDHWQNGFGEGAYAGHAFSVGAQLIREGDSMPRGDGRGHID*
JGI1027J11758_126124732	3300000789	Soil	MTSLSLPTGPFTCEIALRRVRAPQFIREEREGVTYKVARDYELAYETILRFTSGASLPXQATLIGELSQRXVIRDAQGRPVRLSGYTXGRAEIRDASGRAIFRGRYYDSRTIRTLAGDEALTVVGQVVVHHWQNGFGEGACAGHAFSVGGRLTQEGDAPLRGQVQGHID*
JGI10216J12902_1030774901	3300000956	Soil	MARQGYDLQLTRYDERGWGAERMGDMTSAEVPTGPFRCEIVLQRVRAPRFILEDRQGVTYMVARDYELAYETVLNFASGARLPIKAKLVGELNQRVIIRDAQRRPVRYSGYTQGLAEISNTDGHVIFRGRYYDSRTLQPLMGDDALTPIGQGIVDHWQNGFGEGAYAGHAFSVGAQLIREGDSMPRGDGRGHID*
JGI10216J12902_1276673751	3300000956	Soil	YELAYETILRFTSGASLPIQATLIGELSQRVVIRDAQGRPVRLSGYTPGRAEIRDASGRAIFRGRYHDSRTIRTLAGDEALTIVGQVVVDHWQNGFGEGACAGHAFSVGGRLTQEGDAPLRGQVQGHID*
F14TB_1086791412	3300001431	Soil	MASGPLPTGPFTCEVELRRIRAPEFVREDKQGVTYLVARGYEIPTRRRCASRAALNQPIKARLRGELNQRIVXXXXXXXPARMSGYVQGLVEINNADGHPIFRGHYYDSRTVQSLTGDEALTATGQTVVDHFENGFGEGAYAGHAFSMGAQLTREGDGPLQGEG
JGI25382J43887_103306452	3300002908	Grasslands Soil	EIAYETTLRFTSGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID*
Ga0055439_102518301	3300004019	Natural And Restored Wetlands	EKQGITYLVARDYELAYETILQFSTGARLSIKARLVGELNQRIVIRNAQGQPVRISGYVQGLAEISDSDGLVIFRGRYYDSRVVQSLAGDEAFTPIGQSVVDHYENGFGEGGYAGHAFSVGVQLTREGDSPLRGEGRGHID*
Ga0055432_101332311	3300004022	Natural And Restored Wetlands	FLREEKQGITYLVARDYELAYETILQFSTGARLSIKARLVGELNQRIVIRNAQGQPVRISGYVQGLAEISDSDGLVIFRGRYYDSRVVQSLAGDEAFTPIGQSVVDHYENGFGEGGYAGHAFSVGVQLTREGDSPLRGEGRGHID*
Ga0055520_101767121	3300004150	Natural And Restored Wetlands	AQFVREETGGITYMIARGYELGYETVLRFCAGAGLSVRARIFGELNERVVIRDAQNRPARLSGYAQGAMEISDSNGLVIFRGRYYDSRTIRSLAGDDALTVVGSSLVDHWENGFGEGPYAGHAFSVGGQLTQEGDGPLRGVCRGHID*
Ga0063356_1048272041	3300004463	Arabidopsis Thaliana Rhizosphere	VTADSMPTGAFSCEVTLELNQSPKFVREEKGGVTYLVARGYELGYKTTLRFASGAELPVRATLLGELNQQIVIRDARGRPVQTSGFVQGLLEIADAAGRVIFRGRYYDSRVVQPLSGDDALTATGERVVDHWENGFGEGPYA
Ga0062592_1025811111	3300004480	Soil	MTTLPTGAFACEIVLRRIRAPQFVREDREGVTYLVARDYEITYDTVLHFAGDVRLPVKAILVGELNQRIVIRDAASQPVRYVGYAQGRVELIDSDGLVMFRGRYYDSRTAQPLSGGDTLTPVGQSVVDHWESAFGEGAY
Ga0066671_102941132	3300005184	Soil	MDAPTGPFTCEVTLRRIRAPEFKREDKHGVTYLTARGYEIAYDTVLRFAHGVQLTIKARLVGELNQRLIIRDPSGRPVRMSGCAQGLAEIDDAEGHVLFRGRYYDSRTLRLLTGDDAFTPIGQAVVDHWENGFGEGAYAGHAFSMGVQLTQEGETPLRGDGRGHID*
Ga0070708_1015046071	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	EIVLRRIRAPQFVREEREGVTYLVARDYELAYDTILRFAGDVCLPVRARLVGELNQRLVIRDAAARPVRYIGYAQGRVEVIDSDGRVTFRGRYYDSRVAQPLSGDDTLTPVGQSVVDHWESAFGEGAYAGHAFSVGGRLTREGERPPTGEAHGHID*
Ga0070707_1005860151	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTILPTGAFTCEIVLRRIRAPQFVREEREGVTYLVARDYELAYDTILRFAGDVCLPVRARLVGELNQRLVIRDAAARPVRYIGYAQGRVEVIDSDGRVTFRGRYYDSRVAQPLSGDDTLTPVGQSVVDHWESAFGEGAYAGHAFSVGGRLTREGERPPTGEAHGHID*
Ga0070698_1003360811	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSHRSLHYGKCNARWCVHLRGHHADYPLVREEHGGVTYLVNRDYEFGYETILRFTSGAELPVTAKLVGELHQQVVIRDARGRPARLSGYVQGRVEISDAQGRLLFRGRYYDSRTVQSLAGDETLTATGQRVVDHWENGFGEGRYAGHAFALGVQLTREGDAPGRGQID*
Ga0066693_100934312	3300005566	Soil	VTTDAPTGPFTCEVILRRIRAPEFKREDKHGVTYLTARGYEIAYDTVLRFAHGVQLTIKARLVGELNQRLIIRDPSGRPVRMSGYAQGLAEIDDAEGHVLFRGRYYDSRTLRLLTGDDAFTPIGQAVVDHWENGFGDGAYAGHAFSMGVQLTQEGETPLRGDGRGHID*
Ga0081455_108496451	3300005937	Tabebuia Heterophylla Rhizosphere	MTSAMLPTGQFRCEITLRRIRAPQFVREEKQGVTYMTARDYEIAYEAILHFTSGADFPVKARLIGELNQRVVIRDKTGRPERLSGYAQGIAEIRDSTDAVIFRGRYYDSRTIRSLAGDDALTVIGQSAVDHWENGFGEGPYAGHAFSVGGQLTQEGDAPLRGECRGHID*
Ga0066651_103563802	3300006031	Soil	VILRRIRAPEFKREDKHGVTYLTARGYEIAYDTVLRFAHGVQLTIKARLVGELNQRLIIRDPSGRPVRMSGYAQGLAEIDDAEGHVLFRGRYYDSRTLRLLTGDDVFTPIGRAVVDHWENGFGDGAYAGHAFSMGVQLTQEGETPLRGEGRGHID*
Ga0066652_1009272592	3300006046	Soil	MDAPTGPFTCEVILRRIRAPEFKREDKHGVTYLTARGYEIAYDTVLRFAHGVQLTIKARLVGELNQRLIIRDPSGRPVRMSGYAQGLAEIDDAEGHVLFRGRYYDSRTLRLLTGDDVFTPIGQAVVDHWENGFGDGAYAGHAF
Ga0075417_100411323	3300006049	Populus Rhizosphere	MVARDYELAYETILRFTSGASLPIQATLIGELSQRVVIRDAQGRPVRLSGYTQGRAEIRDASGRAIFRGRYYDSRTIRTLAGDEALTVVGQVVVDHWQNGFGEGACAGHAFSVGGRLTQEGDAPLRGQVQG
Ga0066658_102514653	3300006794	Soil	MTILPTGVFACEIVLRRIRAPQFVREEREGVTYLVARDYELAYDTILRFAGDVRLPVRARLVGELNQRLVVRDVAGRPVRYIGYAQGRVEIIDSDERVMFRGRYYDSRTAQPLSGGDTLTPVGQSVVDHWESAFGEAAYAGHAFSVGGRLTREGETPLSSEAHGHID*
Ga0075430_1003491051	3300006846	Populus Rhizosphere	MAHAMPTGTFTCEFTPRIIRAPQFVREEKGGVTYLVGRDYAMVYEMTLHFTNGAELPIKTSLVGELNQQVVIRDAHGKPTRISGYVQGRVEINDTQGHVLFRGRYYDSRVVQSLAGDEALTVTGQRVVEHWENGFGEGPYAGHAFSMGAQITREEDAPPRGQGRGQID*
Ga0075430_1003491052	3300006846	Populus Rhizosphere	MAHAIPTGAFTCEVTLQRIRVPALVREEKDGVTYLVNRDYELAYETILHFTSGAELPVTAKLVGELSQQVVIRDAQGRPVQVSGYVQGRMELSDTQGRPLFRGRYYDSRTVQSLTGDEALTATGQRVVEHWENGFGEGPYAGHAFSLGAQLTREGATPTPLRGQGRGQID*
Ga0075433_103926362	3300006852	Populus Rhizosphere	MVARDYELAYETILRFTSGASLPIQATLIGELSQRVVIRDAQGRPVRLSGYTQGRAEIRDASGRAIFRGRYYDSRTIRTLAGDEALTVVGQVVVDHWQNGFGEGACAGHAFSVGGRLTQEGDAPLRGQVQGHID*
Ga0075425_1001887941	3300006854	Populus Rhizosphere	WRTVPRSGSLETNRAEDMTSLSLPTGPFTSEIGLRRVRAPQFIREEREGVTYMVARDYELAYETILRFTSGASLPIQATLIGELSQRVVIRDAQGRPVRLSGYTQGRAEIRDASGRAIFRGRYYDSRTIRTLAGDEALTVVGQVVVDHWQNGFGEGACAGHAFSVGGRLTQEGDAPLRGQVQGHID*
Ga0099791_101311623	3300007255	Vadose Zone Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID*
Ga0066710_1023878741	3300009012	Grasslands Soil	MTILPTGVFACEIVLRRIRAPQFVREEREGVTYLVARDYELAYDTILRFAGDVRLPVTARLVGELNQRLVVRDVAGRPVRYIGYAQGRVEIIDSDERVMFRGRYYDSRVAQPLSGDDTLTPVGQSVVDHWESAFGEGAYAGHAFSVGGRLTREGEKPLTGEAHGHID
Ga0099829_111489751	3300009038	Vadose Zone Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGVHLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID*
Ga0099830_100060392	3300009088	Vadose Zone Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTNGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID*
Ga0099827_1000005134	3300009090	Vadose Zone Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHRENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID*
Ga0075418_109107803	3300009100	Populus Rhizosphere	MVARDYELAYETILRFTSGASLPIQATLIGEHSQRVVIRDAQGRPVRLSGYTQGRAEIRDASGRAIFRGRYYDSRTIRTLAGDEALTVVGQVVVDHWQNGFGEGACAGHAFSVGGRLTQEGDAPLRGQVQGHID*
Ga0075418_128657601	3300009100	Populus Rhizosphere	MAHAIPTGAFTCEVTLQRIRVPALVREEKDGVTYLVNRDYELAYETILHFTSGAELPVTAKLVGELSQQVVIRDAQGRPVQVSGYVQGRMELSDTQGRPLFRGRYYDSRTVQSLTGDEALTATGQRVVEHWENGFGEGPYAGHAFSLGAQLTREGATPTPLRGQGRGQID
Ga0075418_129793061	3300009100	Populus Rhizosphere	MEDMTSAEVPTGPFTCEIVLQRVRAPRFILEDRQGVTYMVARDYELAYETVLNFASGARLPIKAKLVGELNQRVIIRDAQRRPVRYSGYNQGLAEISNTDGHVIFRGRYYDSRILQPLMGDAALTPIGQGIVDHWQNGFGEGAYA
Ga0114129_131435761	3300009147	Populus Rhizosphere	GPSERKGERVTILPTGTFACEIVLRRIRAPQFVREEREGVTYLVARDYELAYDTILRFAGDVRLPVRASLVGELNQRLVIRDAAGRPVRYIGYAQGRVEVIDSDGRVMFRGRYYDSRVAQPLSGDTTFTPVGQSVVDHWESAFGEGVYAGHAFSVGGRLTREGEMPLSGEAHGHID*
Ga0111538_122815821	3300009156	Populus Rhizosphere	MVARDYELAYETILRFTSGASLPVQATLIGELSQRIVIRDAQGRPVRLSGYTGGRAEIRDASGRAIFRGRYYDSRTIRTLAGDEALTVVGQVVVDHWQNGFGEGACAGHAFSVVGD*
Ga0105340_11754902	3300009610	Soil	MAHQGFDLQLTRYDEHGCGAERMGDMTSAEVPTGPFTCEIVLQRVRAPRFILEDRQGVTYMVARDYELAYETVLNFASGARLPIKAKLVGELNQRVIIRDAQRRPVRYSGYTQGLVEISNTDGHVIFRGRYYDSRTLQPLMGDDALTPNGQGIVDHWQNGFGEGAYAGHAFSVGAQLIRKGDSMPRGDGRGHID*
Ga0114944_10308694	3300009691	Thermal Springs	MADSMPTGAFTCEVTLQPVGGPAIVREEKGGVTYLVRRDYEMAYETTLRFTSGAELPVKARLVGELNQQVVIRDAHGRPARISGYVQGRVEISDTHGRMLFQGRYYDSRVAQALSGDEALTATGQRVLDHWENGFGEGSYAGHAFSMGVQLTREGDAPAHGQG
Ga0105084_10491452	3300009811	Groundwater Sand	MTILPTGAFTCEIVLRRIRAPQFVREEREGVTYLVARDYELAYDTILRFAGDVRLPVRARLVGELNQRLVIRDAAARPVGYIGYAQGRVEVIDSDGRVTFRGRYYDSRVAQPLSGDDTLTPVGQSVVDHWESAFG
Ga0126382_113150512	3300010047	Tropical Forest Soil	MMANAMPTGTFTCEFSPRILRAPQFVREEKDGVTYLIGRDYEVVYEMTLHFTSGAELPVTINLIGELNQQVVIRDAHGKPARISGYVQGRMELHDTQGRLLFRGRYYDARVVQSLAGDEALTPTGQRLVEYWQNGFGEGPYAGHAFSMDAQITREGNAPPRGQGRGQID*
Ga0126382_117202332	3300010047	Tropical Forest Soil	GVTYMVASGYELGYETVLHFASGARLPVKAKLIGELNQRVVIRDVKGRPVRLSGYTQGLAEILDSSGAVIFRGRYYDSRTIRSLAGDEALTIIGQAVVDHWQNGFGEGPYAGHAFSVGGRMTQEGDAPLRGEVHGHID*
Ga0126370_101818981	3300010358	Tropical Forest Soil	MVARGYELAYETVLHFASGARLPVKAKLIGELNQRVVIRDVKGRPVRLSGYTQGLAEILDSSGAVIFRGRYYDSRTIRSLAGDEALTIIGQAVVDHWQNGFGEGPYAGHAFSVGGRMTQEGDAPLRGEVHGHID*
Ga0126377_110248852	3300010362	Tropical Forest Soil	MALRPILSPQFVREDKQGVTYMVARGYELGYETVLHFASGARLPVKAKLIGELNQRVVIRDVKGRPVRLSGYTQGLAEILDSSGAVIFRGRYYDSRTIRSLAGDEALTIIGQAVVDHWQNGFGEGPYAGHAFSVGGRMTQEGDAPLRGEVHGHID*
Ga0126379_121108211	3300010366	Tropical Forest Soil	MVARGYELAYETVLHFASGARLPVKAKLIGELNQRVVIRDVKGRPVRLSGYTQGLAEILDSSGAVIFRGRYYDSRTIRSLAGDEALTIIGQAVVDHWQNGFGEGPYAGHAFSVGGRMTQEGDAPLRGEAHGHID*
Ga0126379_131875721	3300010366	Tropical Forest Soil	MGTSTALPTGPFVCAVEIRRIRPPKFVREERQGVTYMVARDYEIAYETVLRFADGGELAIAATLVGELNQRVVIRDRDGRAVRMSGYVLGRTEIRTPHGQVIFRGPYYDARTIQSLAGDDALTTVGRVVVDHFENGFGEGPYAGHAFSLG
Ga0136847_129552314	3300010391	Freshwater Sediment	MTSLSLPTGPFTCVVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLHFTSGAQLPIRASLVGELNQRVVIRDELGRPVRISGYVQGLTEINDADGRVIFRGRYYDSRTVQSLAGDDALTPVGQAVVDHCENGFGEGPYAGHAFSMGAQLTREGNAPLRGEGRGQID*
Ga0137391_100080798	3300011270	Vadose Zone Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGCYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID*
Ga0137393_100135867	3300011271	Vadose Zone Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQTVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID*
Ga0137389_102871543	3300012096	Vadose Zone Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGVQLPIRARLVGELNQRVVIRDEHRRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQ
Ga0137388_102410561	3300012189	Vadose Zone Soil	PFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQTVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID*
Ga0137374_100333327	3300012204	Vadose Zone Soil	MTSLSLPTGPFTCDVGLRRIRAPQFVREEKEGVTYMVARGYEIGYETTLRFTSGAQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISAADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDAALRGEGRGQID*
Ga0137376_115426302	3300012208	Vadose Zone Soil	VTTDAPTGPFTCEVILRRIRAPEFKREDKHGVTYLTARGYEIAYDTVLRFAHGVQLTIKARLVGELNQRLIIRDPSGRPVRMSGYAQGLAEIDDAEGHVLFRGRYYDSRTLRLLTGDDVFTPIGQAVVDHWENGFGDGAY
Ga0137379_102081612	3300012209	Vadose Zone Soil	MMADAMPTGTFTCEITLRQLGGPPIVREEKDGVTYLTRRDYEMAYDTTLRFTNGATLPVKARLVGELNQQVIIRDAHGRPARMSGYVQGRVEISDTQGRLLFQGRYYDSRVVQSLAGDEALTTTGQRTLDHWENGFGAGSYAGHAFSMGAQLTREGDTPAHGQGHGQID*
Ga0137369_100481184	3300012355	Vadose Zone Soil	MTLGRVATGPFTCEVELRRIRAPQFVREDKQGVTYLVARDYETAYEATLRFTGGAQLPVKARLRGELNQRVVIRDEAGRPARMSGYVQGLVEINNADGDPIFRGHYYDSRTIQSLTGDDALTPLGQTLVDHFENGFGEGVYTGHAFSMGVQLIREGNGPLRGEGRGQID*
Ga0137369_100850104	3300012355	Vadose Zone Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGAQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISAADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDAALRGEGRGQID*
Ga0137368_103368511	3300012358	Vadose Zone Soil	MPTGTFTCEVTTRSGGGPAFVREEKGGVTYLVRRDYEFAYETTLRFTNGAELPVTARLVGELSQLVVIRDAHGRPTQLSGSAQGRVELSDTQGHLLFRGRYYDSRVVQSLAGDEALTATGPRVGDHWENGFGEGPYAGHAFSMGGQLIREGDAPSRMQGRGQID*
Ga0137375_105705961	3300012360	Vadose Zone Soil	MPTGTFTCEVTTRSGGGPAFVREEKGGVKYLVRRDYEFAYETTLRFTNGAELPVTARLVGELSQLVVIRDAHGRPTQLSGSAQGRVELSDTQGHLLFRGRYYDSRVVQSLAGDEALTATGPRVGDHWENGFGEGPYAGHAFSMGGQLIREGDAPSRMQGRGQID*
Ga0137375_107088321	3300012360	Vadose Zone Soil	MIARDYEVAYEATLHFTSGADFPVKARLIGELNQRVVIRDGQGRPARLSGYAQGFAEIRDSSEFVIFRGRYYDSRTIRSLAGDDALTVVGQTAVDHWENGFGEGLYAGHAFSVGARLTREGDAPLRGEGHGHID*
Ga0137397_100167595	3300012685	Vadose Zone Soil	MVARDYEIAYETVLNFASGARLSVKAKLVGELNQRVIIRDAQGRPSRISGYVQGLAEIGDSAGLVIFRGRYYDSRTIQSLAGDDALTPIGASVVDHWENGFGEGPYAGHAFSIGARLTREGDAPLRGEGRGQID*
Ga0137394_104061792	3300012922	Vadose Zone Soil	TYMVSRDYEIAYETVLNFASGARLSVKAKLVGELNQRVIIRDAQGRPSRISGYVQGLAEIGDSAGLVIFRGRYYDSRTIQSLAGDDALTPIGASVVDHWENGFGEGPYAGHAFSIGARLTREGDAPLRGEGRGQID*
Ga0137407_109639371	3300012930	Vadose Zone Soil	MTITPLPTGAFTCDVILRRIRAPHFIREERDGVTYMVARDYELAYETALSFASGGRLSVRARLVGELNQRVIIRDAEGRPVRYSGFVQGLAEISESDGQVIFRGRYYDSRVVQPLAGDETFTPVGQSLVDHCENGFGEGPYAGHAFSLGARLTREGDAPLRGEGRGYID*
Ga0137407_119202821	3300012930	Vadose Zone Soil	QFIREERQGITYMVARDYEIAYETVLNFASGARLPVKAKLVGELNQRVIIRDAQGRPERISGYVQGLAEIGDSTGRVIFRGRYYDSRTIQSLAGDDALTPIGESVVDHWENGFGDGPYAGHAFSIGTRLTREGDAPLRGEGRGHID*
Ga0126375_100533474	3300012948	Tropical Forest Soil	MVARGYELAYETVLHFASGARLPVKAMLIGELNQRVVIRDVKGRPVRLSGYTQGLAEILDSSGAVIFRGRYYDSRTIRSLTGDEALTIIGQAVVDHWQNGFGEGPYAGHAFSVGGRMTQEGDAPLRGEVHGHID*
Ga0180104_10153151	3300014884	Soil	RDYEIAYETTLRFTSGAELPIRARLVGELNQRVVIRDERGRAVRISGYVQGLAEIHDADGRVIFRGRYYDSRTVQSLAGDEALTPIGQVEMDHWENGFGEGPYAGHAFSVGAQLTREGDGPLRGEGRGHID*
Ga0180085_12392451	3300015259	Soil	MTSDSIPTDAFTCDVTLRRIRAPEFIREQRGGVTYLTARGYEIAYETILRFTSGAELPVKAKLVGELNQRVVIRDARGRPARISGYVQGLVEISDAAGRVIFRGRYYDSRTVQSLAGDDALTPIGQSLVDHWENGFGEGPYAGHAFSMGVQLTREGDAPLTGQ
Ga0184634_100897041	3300018031	Groundwater Sediment	MSSDTMPVGEFFCDITLQVIRAPEFTREERGGITYLVARGYEQAYETILRFTNCAELPVKGRIVGELNQMVVIRDARGKPVRRTGYVQGLTEISDAHGTGVIFRGRYYDPRVIVCLSGDEALTGAGLSVVEHRENGFGEGPYAGHAFSMGVLLTRTAINPLRGQGHGRID
Ga0184638_10007235	3300018052	Groundwater Sediment	MTSTILPTGPFTCEVALRRIRAPQFVREEKQGVTYMVARGYEIAYETILHFNGGARLPVKARLVGELNQRVIIRDAQGRPVRISGYVQGLAEISDSDGLVIFRGRYYDSRTVQSLAGDDALTPVGESVVDHWENGFGEGPYAGHAFSVGARLTREGDAPLRGEGHGHID
Ga0184638_12126981	3300018052	Groundwater Sediment	SLPTGPFVCEVELRRIRAPEFVREEKQGVTYLVARDYETAYATTLRFPGGAQLPIKAKVVGELNQRVVIREADGRPVRTSGYVQGLVEIHNADGRVIFRGRYYDSRTVQSLTGDDALTPISQTVVDHFENGFGEGPYACHAFSMGVQLTREGSGPLRGEGRGQID
Ga0184626_100113632	3300018053	Groundwater Sediment	MTSLSLPGPFTCEVGLRRIRAPQFVREETEGVTYMVARGYDIAYETTLRFTSGVQLLIRARLVGELNQRVVIRDEHGRPVRISGYVQGLLEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID
Ga0184626_101795821	3300018053	Groundwater Sediment	VTSASLPTGPFVCAVELRRIRAPEFVREEKQGVTYLVARDYETAYATTLRFPGGAQLPIKAKVVGELNQRVVIREADGRPVRTSGYVQGLVEIHNADGRVIFRGRYYDSRTVQPLAGDDTLTPIGQSVVDHFENGFGEGPYAGHAFSMGVQLTREGSGPLRGEGRGQID
Ga0184626_102700482	3300018053	Groundwater Sediment	MTSTILPTGPFTCEVALRRIRAPQFVREEKQGVTYMVARGYEIAYETILHFNGGARLPVKARLVGELNQRVIIRDAQGRPVRISGYVQGLAEISDSDGLVIFRGRYYDSRTVQSLAGDDALTPVGESVVDHWENGFG
Ga0184623_103173561	3300018056	Groundwater Sediment	VTSASLPTGPFVCAVELRRIRAPEFVREEKQGVTYLVARDYETAYATTLRFLGGAQLPIKAKVVGELNQRVVIREADGRPVRTSGYVQGLVEIHNADGRVIFRGRYYDSRTVQPLAGDDTLTPIGQSVVDHFENGFGEGPYAGHAFSMGVQLTREGSGPLRGEGRGQ
Ga0184637_100990872	3300018063	Groundwater Sediment	MAPLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARDYEIAYETTLRFTSGAELPISARLVGELNQRVVIRDADGRPVRISGYVQGLAEITDADGHMIFRGRYYDSRTVQSLAGDEALTPIGQVVVDHWENGFGEGRYAGHAFSVGAQLTREGDGPLRGEGRGHID
Ga0184640_104109741	3300018074	Groundwater Sediment	CEVALRRIRPPQFIREERQGITYMVARDYETAYETVLTFAGGARLPVKANLVGELNQRIIINDAQGRPARVSGYVLGLAEIRDAAGLVIFRGRYYDSRTIQSLAGDDALTPIGEGVVDHWENGFGEGSYAGHAFSVGVRLTREGDAPLRGEGRGHID
Ga0184632_100078041	3300018075	Groundwater Sediment	MVARGYEIAYETILHFNGGARLPVKARLVGELNQRVIIRDAQGRPVRISGYVQGLAEISDSDGLVIFRGRYYDSRTVQSLAGDDALTPVGESVVDHWENGFGEGPYAGHAFSVGARLTREGDAPLRGEGHGHID
Ga0184632_102660622	3300018075	Groundwater Sediment	MTSLSLPGPFTCEVGLRRIRAPQFVREETEGVTYMVARGYDIAYETTLRFTSGVQLLIRARLVGELNQRVVIRDEHGRPVRISGYVQGLLEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVGDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID
Ga0184609_100361831	3300018076	Groundwater Sediment	MDLTVAIAVYEARQHRIERSAQVTSASLPTGPFVCEVELRRIRAPEFVREEKQGVTVTYLVARDYETAYATTLRFLGGAQLPIKAKVVGELNQRVVIREADRRPVRTSGYVQGLVEIHNADGRVIFRGRYYDSRTVQPLAGDDTLTPIGQSVVDHFENGFGEGPYAGHAFSMGVQLTREGSGPLRGEGRGQID
Ga0184609_102147281	3300018076	Groundwater Sediment	MTSLSRPTGPFTCEVVLRRIRAPQFVREEKEGVTSRGYEIAYETTLRFTSGAQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID
Ga0184612_104141312	3300018078	Groundwater Sediment	VELRRIRAPEFVREEKQGVTYLVARDYETAYATTLRFPGGAQLPIKAKVVGELNQRVVIREADGRPVRTSGYVQGLVEIHNADGRVIFRGRYYDSRTVQPLAGDDTLTPIGQSVVDHFENGFGEGPYAGHAFSMGVQLTREGSGPLRGEGRGQID
Ga0184627_100198685	3300018079	Groundwater Sediment	MTSGSLPTGSFICNLEFRRIRPPAPVREEKQGVTYLVARDYEIAYDTTFYFASGAQLPIKARLVGELNESVVIRDHAGRPLRRSGYVQGLTELRTSDGDVIFRGCYYDSRTLQSLAGDDALTPVGATLVDHCENGFGEGSYAGHAFSLGVHLMREGDGPLRGSGRGQID
Ga0184627_100984623	3300018079	Groundwater Sediment	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGAQLPIGARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISAADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID
Ga0184639_101641821	3300018082	Groundwater Sediment	EIAYETVLNFASGARLPVKAKLVGELNQRVIIRDAQGRPVRISGYVQGLAEICDSAGLVIFRGRYYDSRTIQSLAGDDALTPIGQSVVDHWENGFGEGPYAGHAFSIGARLTRKGDAPLRGEGRGHID
Ga0184639_104682152	3300018082	Groundwater Sediment	MAPLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGAQLPIRASLVGELNQRVVIRDELGQPVRISGYVQGLAEINDADGRVIFRGRYYDSRTVQSLAGDDALTPVGQAVVDHWENGFGVGPYAGHAFSMGAQLTREGDAPLRGEGRGQID
Ga0190265_100269678	3300018422	Soil	MASGPLPTGPFTCEVELRRIRAPEFAREDKQGVTYLVARGYEIAYEATLRFTGGVQLPIKARLRGELNQRIVIRDASGRPARMSGYVQGLVEINNADGYPIFRGHYYDSRTVQSLTGDEALTPTGQAVVDHFENGFGEGAYAGHAFSMGARLIREGDGPLRGEGRGQID
Ga0190265_110522622	3300018422	Soil	VTSEALPTGEFSCEVELRRVRAPQFVREEKHGVTYLVARDYELAYDTVLRFASGAQLAISARLVGELNQRVVIRDAAGRPARMSGYVLGLVEIRRADGDAMFRGRYYDARTMQLLAGDDALTPVGQGVVDHFESGFGEGPYAGHAFSLGVQLIREGSAPLRGEGRGHID
Ga0190268_121265751	3300018466	Soil	VREEKDGVTYLIGRDYEVVYEMTLHFTSGAELPVTITLVGELNQQVVIRDAHGKPARISGYVQGRMELHDAQGRLLFRGRYYDARVVQSLAGDEALTPTGQRLVEHWQNGFGEGPYAGHAFSMGAQITREGNAPPRGQGRGQID
Ga0187892_100784393	3300019458	Bio-Ooze	MTSTPLPTGAFTCDVILRRIRPPHFIREERDGVTYMVARDYELAYETVLSFTSGGRLSITARLVGELNQRVIIRDAQGRPVRYSGFVQGRSEISESDGPVIFRGRYYDSRVVQPLAGDETFTPVGQSLVDHFENGFGGGRYVGHAFSLGARLTREGGDTPLRGEGRGHID
Ga0180118_12276362	3300020063	Groundwater Sediment	MTSDSIPTDAFTCDVTLRRIRAPEFIREQRGGVTYLTARGYEIAYETILRFTSGAELPVKAKLVGELNQRVVIRDARGRPARISGYVQGLVEISDAAGRVIFRGRYYDSRTVQSLAGDDALTPIGQSLVDHWENGFGEGPYAGRAFSMGVQLSREGDAPLKGQGRGQID
Ga0210378_100051687	3300021073	Groundwater Sediment	MTSLSLPGPFTCEVGLRRIRAPQFVREETEGVTYMVARGYDIAYETTLRFTSGVQLLIRARLVGELNQRVVIRDEHGRPVRISGYVQGLLEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTR
Ga0212128_106748911	3300022563	Thermal Springs	MADSMPTGAFTCEVTLQPVGGPAIVREEKGGVTYLVRRDYEMAYETTLRFTSGAELPVKARLVGELNQQVVIRDAHGRPARISGYVQGRVEISDTHGRMLFQGRYYDSRVAQALSGDEALTATGQRVLDHWENGFGEGSYAGHAFSMGVQLTREGDAPAHGQGRGQID
Ga0207646_107260541	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTILPTGAFTCEIVLRRIRAPQFVREEREGVTYLVARDYELAYDTILRFAGDVCLPVRARLVGELNQRLVIRDAAARPVRYIGYAQGRVEVIDSDGRVTFRGRYYDSRVAQPLSGDDTLTPVGQSVVDHWESAFGEGAYAGHAFSVGGRLTREGERPPTGEAHGHID
Ga0209237_10080114	3300026297	Grasslands Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTSGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID
Ga0257173_10586131	3300026360	Soil	LPTGPFTCEVALRRVRAPQFIREERQGITYMVARDYEIAYETVLNFACGARLPVKAKLVGELNQRVIIRDAQGRPERISGYVQGLAEIGDSAGLVIFRGRYYDSRTIQSLAGDDALTPIGVSVVDHWENGFGEGPYAGHAFSIGARLTREGDAPLRGEGRGQID
Ga0209846_10324781	3300027277	Groundwater Sand	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTIGAQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLAGDDALTPVGQAVVDHWENGFGEGPYAGHA
Ga0208185_10600442	3300027533	Soil	KDNLPKGWSITESKNYIGVSHTDAKYTREVLAHAEALRTWLDSWSGIGHVVVGMAHQGFDLQLTRYDEHGCGAERMGDMTSAEVPTGPFTCEIVLQRVRAPRFILEDRQGVTYMVARDYELAYETVLNFASGARLPIKAKLVGELNQRVIIRDAQRRPVRYSGYTQGLVEISNTDGHVIFRGRYYDSRTLQPLMGDDALTPNGQGIVDHWQNGFGEGAYAGHAFSVGAQLIRKGDSMPRGDGRGHID
Ga0209180_101096921	3300027846	Vadose Zone Soil	MTSLSLPTGPFTCEVGLRRIRAPQFVREEKEGVTYMVARGYEIAYETTLRFTNGVQLPIRARLVGELNQRVVIRDEHGRPMRISGYVQGLAEISDADGRVIFRGRYYDSRTVQSLTGDDALTPVGQAVVDHWENGFGEGPYAGHAFSMGAQLTRQGDVALRGEGRGQID
Ga0299906_100511891	3300030606	Soil	MTSTVLPTGPFTCAVALRRIRAPQFIREERQGVTYMAARDYEIAYETILHFTSGARLPVKARLVGELNQRVIIRDAQGRPVRVSGYVQGLAEISDSEGFVIFRGRYYDSRTVQSLAGDDALTPIGQSVVDHWENGFGEGPYAGHAFSVGAQLTREGDAPLQGEGRGHID
Ga0302046_100600761	3300030620	Soil	DMTSTVLPTGPFTCAVALRRIRAPQFIREERQGVTYMAARDYEIAYETILHFTSGARLPVKARLVGELNQRVIIRDAQGRPVRVSGYVQGLAEISDSEGFVIFRGRYYDSRTVQSLAGDDALTPIGQSVVDHWENGFGEGPYAGHAFSVGAQLTREGDAPLQGEGRGHID
Ga0299913_113469792	3300031229	Soil	MDTMPIGTFTCDVTLQRIRSPQFVREIKDGVTYLTGRDYELAYETTLHFADGATLPIKARLFGELNQQVVIRDKGGTPIQTSGYVQGRAEICDTRGNVLFRGRYYDSRVVQSLTGDEALTATGPRLLEQHLENGLGEGAYAGHAFSLSGQLSREGDAPHSGQCHGCID
Ga0307469_107088302	3300031720	Hardwood Forest Soil	MNVTSTAVSTGPFTCEIVLRRIRPPQFIREERHGITYMVARDYEIAYETFLTFAGGTRLPVKARLIGELNQRVVIRDDKRRPARISGYVQGLAEISDSAGLVIFRGRYYDSRTIQSLAGDEALTPIGESVVDHWENGFGEGPYAGHAFSVGARLTREGDTPLRGEGRGHID
Ga0307468_1014965161	3300031740	Hardwood Forest Soil	VTSTAVSTGPFTCEIVLRRIRPPQFIREERHGITYMVARDYEIAYETFLTFAGGTRLPVKARLIGELNQRVVIRDDKRRPARISGYVQGLAEISDSAGLVIFRGRYYDSRTIQSLAGDEALTPIGESVVDHWENGFGEGPYAGHAFSVGARLTREGDTPLRGEGRGHID
Ga0307468_1025741351	3300031740	Hardwood Forest Soil	MTTLPTGAFTCEIVLRRVRAPQFVREEREGVTYLVARDYELAYDTILRFAGDLRLPIRVKLVGELNQRLVIRDATALPVRYIGYAQGRVEVIDSDGLVMFRGRYYDSRVAQPLSGGDALTPVGQSVVDHWESAFGEGAYAGHAFSVGGRLTREGEMPLTGEAHGHI
Ga0214472_100023546	3300033407	Soil	MDTMPTGTFTCDVTLQRIRSPQFVREVKDGVTYLTGRDYELAYETTLHFADGATLPIKARLFGELNQQVVIRDKSGKPVQTSGYVQGRAEICDTRGNVLFRGRYYDSRVVQSLTGDEALTATGPRLLEQHLENGLGEGAYAGHAFSLSGQLSREGDAPHSGQCHGCID
Ga0214472_109026801	3300033407	Soil	MAAGPLPTGPFTCEVELRRIRPPEFVREDKQGVTYLVARGYEIAYEATLRFTGGAELPIKARLRGELNQRIVIRDASGRPARMSGYVQGLVEITNADGHPIFRGHYYDSRTVQSLTGDEALTPTGQTVVDHFENGFGEGAYAGHAFSMGAQLIREGDGPLRGEGRGHID
Ga0214471_1000638414	3300033417	Soil	MTTLPTGAFSCEIVLRRVRAPQFVPEEREGVTYLIARDYELTYDTIIRFAGDVRLPVRARLVGELNQRLVIRDAAGRPVRYIGYAQGRVELIDSDGRVMFRGRYYDSRVAQPLSGDDTLTPVGQSVVDHWESAFGEGTYAGHAFSVGGRLTREGEMPLSGEAHGHLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098236

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences