Metagenome / Metatranscriptome Family F098156

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098156
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	62 residues
Representative Sequence	VADDRDFRDDMQRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALEKALDIVAEAGE
Number of Associated Samples	93
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.04 %
% of genes near scaffold ends (potentially truncated)	98.08 %
% of genes from short scaffolds (< 2000 bps)	85.58 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.038 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.115 % of family members)
Environment Ontology (ENVO)	Unclassified (31.731 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.808 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.36% β-sheet: 0.00% Coil/Unstructured: 38.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00374	NiFeSe_Hases	84.62
PF14720	NiFe_hyd_SSU_C	3.85
PF07730	HisKA_3	0.96
PF01106	NifU	0.96
PF00296	Bac_luciferase	0.96
PF02518	HATPase_c	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0374	Ni,Fe-hydrogenase I large subunit	Energy production and conversion [C]	84.62
COG3259	Coenzyme F420-reducing hydrogenase, alpha subunit	Energy production and conversion [C]	84.62
COG0694	Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.96
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.96
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.96
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.96
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	19.23 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	11.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.77 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.92 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	19.23 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	11.54 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.92 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	19.23 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	11.54 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.85 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.92 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	19.23 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	11.54 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.85 %
Isosphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales	1.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.92 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	15.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	11.54 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.85 %
Isosphaeraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	1.92 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	1.92 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	14.42 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	11.54 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.85 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1.92 %
Singulisphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera	1.92 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	14.42 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	11.54 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.85 %
Singulisphaera acidiphila	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila	1.92 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1.92 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.96 %
Unclassified	root	N/A	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001084\|JGI12648J13191_1018304	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila	676	Open in IMG/M
3300002245\|JGIcombinedJ26739_101014365	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300004080\|Ga0062385_10051747	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1781	Open in IMG/M
3300004119\|Ga0058887_1461087	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300004635\|Ga0062388_100466046	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1120	Open in IMG/M
3300004635\|Ga0062388_102890885	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila	507	Open in IMG/M
3300005328\|Ga0070676_10466700	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300005364\|Ga0070673_101283358	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300005436\|Ga0070713_102153955	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	540	Open in IMG/M
3300005444\|Ga0070694_100421550	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1049	Open in IMG/M
3300005712\|Ga0070764_10657261	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	643	Open in IMG/M
3300005921\|Ga0070766_10287550	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300005995\|Ga0066790_10293531	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300006162\|Ga0075030_100588488	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300006163\|Ga0070715_10030371	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	2184	Open in IMG/M
3300006172\|Ga0075018_10346990	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300006174\|Ga0075014_100447106	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300006354\|Ga0075021_10351683	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300009638\|Ga0116113_1118177	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300010343\|Ga0074044_10136193	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300010858\|Ga0126345_1103119	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300010858\|Ga0126345_1106078	All Organisms → cellular organisms → Bacteria → Terrabacteria group	599	Open in IMG/M
3300011120\|Ga0150983_13359550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1232	Open in IMG/M
3300011120\|Ga0150983_13660361	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	3447	Open in IMG/M
3300012469\|Ga0150984_116516423	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300012957\|Ga0164303_10899969	All Organisms → cellular organisms → Bacteria → Terrabacteria group	620	Open in IMG/M
3300012961\|Ga0164302_10962487	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300012986\|Ga0164304_10189205	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300014169\|Ga0181531_10123633	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1555	Open in IMG/M
3300014169\|Ga0181531_11036940	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300014489\|Ga0182018_10451590	All Organisms → cellular organisms → Bacteria → Terrabacteria group	683	Open in IMG/M
3300014969\|Ga0157376_12041138	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300015371\|Ga0132258_12822978	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1209	Open in IMG/M
3300017938\|Ga0187854_10346369	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300018025\|Ga0187885_10318315	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300018038\|Ga0187855_10015582	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	5039	Open in IMG/M
3300018040\|Ga0187862_10581687	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300018042\|Ga0187871_10088115	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300019240\|Ga0181510_1053334	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300020579\|Ga0210407_11167775	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300021168\|Ga0210406_10016314	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	7048	Open in IMG/M
3300021170\|Ga0210400_10929689	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300021178\|Ga0210408_10805856	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300021178\|Ga0210408_11055721	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300021180\|Ga0210396_11265910	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300021181\|Ga0210388_10486959	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1083	Open in IMG/M
3300021401\|Ga0210393_10583570	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300021401\|Ga0210393_11029434	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300021404\|Ga0210389_10843049	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300021432\|Ga0210384_10149969	All Organisms → cellular organisms → Bacteria	2092	Open in IMG/M
3300021432\|Ga0210384_10437171	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300021475\|Ga0210392_10042901	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	2739	Open in IMG/M
3300021478\|Ga0210402_10099431	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	2610	Open in IMG/M
3300021559\|Ga0210409_10998446	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300022522\|Ga0242659_1002786	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300022522\|Ga0242659_1027553	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300022531\|Ga0242660_1167794	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300022721\|Ga0242666_1198552	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300023030\|Ga0224561_1020244	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300024246\|Ga0247680_1056848	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300025913\|Ga0207695_10629966	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300025924\|Ga0207694_10085528	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	2482	Open in IMG/M
3300025928\|Ga0207700_11726600	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300025931\|Ga0207644_10782973	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300025942\|Ga0207689_10491437	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300027109\|Ga0208603_1028028	All Organisms → cellular organisms → Bacteria → Terrabacteria group	890	Open in IMG/M
3300027576\|Ga0209003_1094060	Not Available	563	Open in IMG/M
3300027605\|Ga0209329_1056327	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300027648\|Ga0209420_1095737	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300027745\|Ga0209908_10001781	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2629	Open in IMG/M
3300027787\|Ga0209074_10434557	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300027812\|Ga0209656_10026002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	3526	Open in IMG/M
3300027824\|Ga0209040_10458080	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300027869\|Ga0209579_10735056	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300027889\|Ga0209380_10610966	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300027895\|Ga0209624_10402321	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300027898\|Ga0209067_10153268	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1223	Open in IMG/M
3300027908\|Ga0209006_10400787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1156	Open in IMG/M
3300027908\|Ga0209006_11056150	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300027908\|Ga0209006_11220446	All Organisms → cellular organisms → Bacteria → Terrabacteria group	586	Open in IMG/M
3300027911\|Ga0209698_10536819	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300028047\|Ga0209526_10393448	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	921	Open in IMG/M
3300029939\|Ga0311328_10034521	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	4665	Open in IMG/M
3300029943\|Ga0311340_11573164	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300029986\|Ga0302188_10215624	All Organisms → cellular organisms → Bacteria → Terrabacteria group	808	Open in IMG/M
3300030007\|Ga0311338_10098878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	3635	Open in IMG/M
3300030007\|Ga0311338_10105763	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	3482	Open in IMG/M
3300030041\|Ga0302274_10394207	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300030507\|Ga0302192_10470936	All Organisms → cellular organisms → Bacteria → Terrabacteria group	509	Open in IMG/M
3300030520\|Ga0311372_11986896	All Organisms → cellular organisms → Bacteria → Terrabacteria group	682	Open in IMG/M
3300030596\|Ga0210278_1089105	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	674	Open in IMG/M
3300030730\|Ga0307482_1142924	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300030738\|Ga0265462_11890223	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300030743\|Ga0265461_13274926	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300031057\|Ga0170834_107528350	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300031234\|Ga0302325_12228166	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300031261\|Ga0302140_10963393	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300031663\|Ga0307484_103460	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300031708\|Ga0310686_115583231	All Organisms → cellular organisms → Bacteria → Terrabacteria group	605	Open in IMG/M
3300031715\|Ga0307476_10077267	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2318	Open in IMG/M
3300031718\|Ga0307474_10783342	All Organisms → cellular organisms → Bacteria → Terrabacteria group	754	Open in IMG/M
3300031823\|Ga0307478_11153554	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300031837\|Ga0302315_10510768	All Organisms → cellular organisms → Bacteria → Terrabacteria group	652	Open in IMG/M
3300032515\|Ga0348332_12257022	All Organisms → cellular organisms → Bacteria → Terrabacteria group	885	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.35%
Host-Associated	Host-Associated	8.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.12%
Aquatic	Environmental → Aquatic	19.23%
Plants	Host-Associated → Plants	8.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.58%
Freshwater	Environmental → Aquatic → Freshwater	13.46%
Peat	Environmental → Terrestrial → Peat	10.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.73%
Sediment	Environmental → Aquatic → Sediment	5.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.54%
Loam	Environmental → Terrestrial → Soil → Loam	20.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.46%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.77%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.81%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.96%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.96%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.96%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004119	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300024246	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029986	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030596	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031663	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12648J13191_10183041	3300001084	Forest Soil	VGEDRDFREDIQQIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAAFEKALEIMAEA
JGIcombinedJ26739_1010143651	3300002245	Forest Soil	VAESKDFREEMQRIGGLVEEMESIADPAVRAASKSLVKSLMDLHGAALEKALDIVAEAGEPGMAII
Ga0062385_100517472	3300004080	Bog Forest Soil	VAESRDFKSDIQRIGGLVQEIDSIADPALRATTKDLVQSLMDLHGAALEKALDIV
Ga0058887_14610872	3300004119	Forest Soil	VADSRDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALEKALGVIADAGE
Ga0062388_1004660462	3300004635	Bog Forest Soil	VSDSKDFREDIQRIGGLVQEIESIADPAVRAATKNLVESLMDLHGAALEKALDIVADSGEHGMGIID
Ga0062388_1028908851	3300004635	Bog Forest Soil	VADSKDFREDVQRIGGLVQEIESIADPAVRAATKHLVQSLMDLHGAALEKALDIVADAGEPGMSIIDRL
Ga0070676_104667002	3300005328	Miscanthus Rhizosphere	VADSRDFREDMQRIGGLVQEIEAIADPAVRAATKGLVQSLMDLHGAALEKALD
Ga0070673_1012833581	3300005364	Switchgrass Rhizosphere	VADGRDFRDDMQRIGGLVAEIESIADPAVRAAAKGLMQSLMDLHGAALEKTLDIVAEAGDSGMN
Ga0070713_1021539552	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VADGRDFRDDMQRIGGLVAEIESIADPAVRAAAKGLMQSLMDLHGAALEKTLDIVAEA
Ga0070694_1004215502	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VADSRDFREDMQRIGGLVQEIDAIADPAVRAATKGLVQSLMDLHGAALEKALDIVADAG
Ga0070764_106572612	3300005712	Soil	VADGKNVREDMQRIGRLVQEIESIADPAVRAATRDLVQSLMDLHGAALEK
Ga0070766_102875501	3300005921	Soil	VSEGRDFREDMQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALENALEIVAEAGEPGMA
Ga0066790_102935312	3300005995	Soil	VSEGKDFREDMQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALENALEIVAEAG
Ga0075030_1005884881	3300006162	Watersheds	VADSRDFREDMQRIGGLVQEIESIADPAIRAATKDLVQSLMDLHGAALEKTLDIVADAGEPGMDII
Ga0070715_100303711	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VADGRDFRDDMQRIGGLVAEIESIADPAVRAAAKGLMQSLMDLHGAALEKTLDIVAEAGDSGMNIIDRLGCDPLV
Ga0075018_103469901	3300006172	Watersheds	VADDKDFRDQIQRIGGLVQEVETIADPAVRATTKVLLQSLMDLHGAAIERAMEIVSEAGDQGMEITDRLARDPMVSS
Ga0075014_1004471062	3300006174	Watersheds	VADDRDFRDDMQRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALEKALDIVAEAGEPGMN
Ga0075021_103516831	3300006354	Watersheds	VSDSKDFRGDIQRIGALVQEIELIADPAVRATAKDMVQSLMDLHGAALEKALDIVAEAGDPGMAIIDRLGKDSLVSSV
Ga0116113_11181771	3300009638	Peatland	MQRIGGLVQEIESIADPAARAATRDLVQSLMDLHGAVLEKTLDNIAEAGEAGMNIIDRLGRDS
Ga0074044_101361932	3300010343	Bog Forest Soil	VADGKDFREDMQRIGGLVQEIESIADPAVRAAAKNLMQLLMDMHGAALEKTLDIVAEAGEPG
Ga0126345_11031192	3300010858	Boreal Forest Soil	MQRIGGLVQEIETIADPAVRAATKGLVQSLMDLHGAALEKALDIVADSGEQGISIIDRLGRDALV
Ga0126345_11060782	3300010858	Boreal Forest Soil	VAESRDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALEKALDIVADAGDPGMH
Ga0150983_133595502	3300011120	Forest Soil	MQRIGGLVQEMESIADPAVRAAANGLVQSLMDLHGAAFEKALEIIAAA
Ga0150983_136603611	3300011120	Forest Soil	VADSRDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALEKALGVIADTGEPGMNIIDR
Ga0150984_1165164232	3300012469	Avena Fatua Rhizosphere	VAEARDFREDMQRIGGLVEEIEQIADPAVRAAAKSLVQSLMDLYGAALEKTLD
Ga0164303_108999692	3300012957	Soil	MQRIGGLVQEIESIADPAVRATTKDLMQSLMDLHGAALEKALDIVAEAGEPGM
Ga0164302_109624872	3300012961	Soil	VADGRDFRDDMQRIGGLVAEIESIADPAVRAAAKGLMQSLMDLYGAALEKTLEIVAEAGDSGM
Ga0164304_101892052	3300012986	Soil	MQRIGGLVQEIDAIADPAVRAATKGLVQSLMDLHGAALEKALDIVADAGEPGLGIIDRMGRDALVS
Ga0181531_101236331	3300014169	Bog	VPDSRDFREEMQRIGNLVQEIESSADPAVRAITKTLMQSLMDLHGAAIEKALDIVADSGEQGIAIIDRLGRDPLV
Ga0181531_110369401	3300014169	Bog	MQRIGGLVQEMESIADPAVRAATKGLVQSLMDLHGAALEKALDIVAEA
Ga0182018_104515902	3300014489	Palsa	VADSRDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALEKALDIVAEAGEPGMTIID
Ga0157376_120411382	3300014969	Miscanthus Rhizosphere	VADGRDFRDDMQRIGGLVTEIESIADPAVRAAAKGLMQSLMDLHGAALEKTLD
Ga0132258_128229783	3300015371	Arabidopsis Rhizosphere	VADGRDFRDDMQRIGGLVAEIESIADPAVRAAAKGLMQSLMDLHGAALEKTLDIVAEA*
Ga0187854_103463692	3300017938	Peatland	VTEGKDFRKDIQRIGGLVQKIESIADPVVRAATKNLVQSLMDLHGAALEKALDIVAEA
Ga0187885_103183152	3300018025	Peatland	VADGRDVREDMQRIGGLVQEIESIADPAARAATRDLVQSLMDLHGAVLEKTLDIVADAGEEGLNIIDRLGRDSLVSSLL
Ga0187855_100155821	3300018038	Peatland	VADGRDVREDMQRIGGLVQEIESIADPAAWAATRDLVQSLMDLHGAVLEKTLDIVA
Ga0187862_105816871	3300018040	Peatland	VADGRDVREDMQRIGGLVQEIESIADPAARAATRDLVQSLMDLHGAVLEKTLDIVADAGEEGLNIIDRLGRDSLVSS
Ga0187871_100881152	3300018042	Peatland	VAEGNDFRQDVQRIGGLVQEIELIADPAVRATTKALVQSLMDLHGAALEK
Ga0181510_10533342	3300019240	Peatland	VPDSRDFREEMQRIGNLVQEIESSADPAVRAITKTLMQSLMDLHGAAIEKALDIVADSGEQGIAIIDRLGRDPLVAS
Ga0210407_111677752	3300020579	Soil	VAESKDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALEKALDIVAEAGEPGM
Ga0210406_100163141	3300021168	Soil	VPESKDFREDIQRIGGLVQEIESIADPAVRTATKNLVQSLMDLHGAALEKALDIVAEAGEPGMNIID
Ga0210400_109296892	3300021170	Soil	VADGRDFREDVQRIGGLVQEIEAIADPAVRAATKGLVQSLMDLHGAALEKALDIVAEAGEPGMSIIDRLGRD
Ga0210408_108058562	3300021178	Soil	VADSKDFREDMQRIGGLVEQIESIADPAVQATAKNLMQALMDLHGAALEKTLDIVAEAGEPGVSIIDRL
Ga0210408_110557211	3300021178	Soil	VADDRDFRDDMGRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALQKALDIVAEAGEPGM
Ga0210396_112659101	3300021180	Soil	VADDRDFRDDMGRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALEKALDIVAEAG
Ga0210388_104869591	3300021181	Soil	VGNGKDFREDVQRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALEKALTIVAEAGEPGITIIDRLGRDS
Ga0210393_105835702	3300021401	Soil	VADSKDFREDMQRIGGLVEQIESIADPAVQATAKNLMQALMDLHGAALEKTLDIVAEA
Ga0210393_110294341	3300021401	Soil	VADGKDFRQDMQRIGGLVQEIEAIADPAVRAAAKNLMQSLMDLHGAAL
Ga0210389_108430492	3300021404	Soil	VSDGKDFRQDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGVALEKAL
Ga0210384_101499691	3300021432	Soil	VADGRDFREDMQRIARLVQEMESIADPAVRAAVKGLVQSLMDLHGAVLEKALDIVAEAGEPGMD
Ga0210384_104371711	3300021432	Soil	VADDRDFRDDMGRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALQKALDIVAEAGGPGLTI
Ga0210392_100429013	3300021475	Soil	VSEGRDFREDMQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALENA
Ga0210402_100994311	3300021478	Soil	VADDKAFRERVQKIGGLVEEIDAIADPAVRATTKELVQSLMDLHGAALERAMEIVSEAGEPGMHLID
Ga0210409_109984462	3300021559	Soil	MFDRRSIVADDRDFREDVQRIGKLVQQIESIADPALRAATQDLVRSVMDLHGAALEKALNIIAESGEPGMGIIDRLGRDSLV
Ga0242659_10027861	3300022522	Soil	VAEYKDFRERVQRIGGLVQEIEEIADPALHASVKELVQSLMDIHGAALERALEIVSAAGE
Ga0242659_10275531	3300022522	Soil	VADDRDFRDDMGRIGGLVQEIESIADPAVRAATKDLVQSLMDLHSAALEKALDI
Ga0242660_11677941	3300022531	Soil	VADDRDFREDMQRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALE
Ga0242666_11985521	3300022721	Soil	VADGRDFRGDMQRIGGLVQEIESIADPAVRAATKDLVQSLMDLHSAALEKALDIVAEAGEPGMNIIDRLGRDSLVSSVLI
Ga0224561_10202442	3300023030	Soil	VADGRDFREDMQRIGGLVQEMESIADPAVRAATKGLVQSLMDLHGAALEKALDIVA
Ga0247680_10568482	3300024246	Soil	VADSRDFREDMQRIGGLVQEIDAIADPAVRAATKGLVQSLMDLHGAALEKALDIVADAGEPGL
Ga0207695_106299661	3300025913	Corn Rhizosphere	VADGRDFRDDMQRIGGLVAEIESIADPAVRAAAKGLMQSLMDLHGAALEKTLDIVAEAGDSGMNIIDRLGCDPLVSSV
Ga0207694_100855283	3300025924	Corn Rhizosphere	VADGRDFRDDMQRIGGLVAEIESIADPAVRAAAKGLMQSLMDLHGAALEKTLDIVAEAGDSGMNIIDRLGCDPLVSSVLI
Ga0207700_117266002	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VADGRDFRDDMQRIGGLVAEIESIADPAVRAAAKGLMQSLMDLHGAALEKTLDIVAEAGDSG
Ga0207644_107829731	3300025931	Switchgrass Rhizosphere	VADGRDFRDDMQRIGGLVAEIESIADPAVRAAAKGLMQSLMDLHGAALEKTLDIVAEAGDSGMNIIDRLG
Ga0207689_104914372	3300025942	Miscanthus Rhizosphere	VADSRDFREDMQRIGGLVQEIEAIADPAVRATTKGLVQSLMDLHGAALEKALNIVADA
Ga0208603_10280281	3300027109	Forest Soil	VVNGKDLREDIQRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALEEA
Ga0209003_10940602	3300027576	Forest Soil	VADSKDFREDMQRIGELVQEIESIADPAVRASTKNLVQSIMDLHGRALEKALDIVAEAGESGMSTIDRL
Ga0209329_10563271	3300027605	Forest Soil	VAEDRDFRDDMQRIGGLVQEIESIADPAVRAATKGLVQSLMDLHGAALEKALDIVAE
Ga0209420_10957371	3300027648	Forest Soil	VADGRDFRGDMQRIGGLVQEIESIADPVTRAATKDLVQSLMDLHSAALEKALDIVAEAGEPGMNIIDRLGR
Ga0209908_100017811	3300027745	Thawing Permafrost	VADSRDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALEKALDIVAEAGEPGMTII
Ga0209074_104345571	3300027787	Agricultural Soil	VADSRDFREDMQRIGGLVQEIDAIADPAVRAATKGLVQSLMDLHGAALEKALDI
Ga0209656_100260021	3300027812	Bog Forest Soil	VAEGNDFRQDVQRIGGLVQEIELIADPAVRAATKALVQSLMDLHGAALEK
Ga0209040_104580801	3300027824	Bog Forest Soil	MSENKQLQQRLQRIGGLVQEIDSIADPRVRASTRELVQLLMEFHGAALD
Ga0209579_107350561	3300027869	Surface Soil	VADNKDFREGMQRIGELVQEIESIADPAVRASTKNLVQSIMDLHGAALEKALDLVAQAGEPGMKIIDQLGHDPL
Ga0209380_106109662	3300027889	Soil	VVGTFDEETVGDGKDFRQDIQRIGGLVQEIESIADPAIRATTKDLVQSLMDLHGAALEKALEI
Ga0209624_104023211	3300027895	Forest Soil	VADSRDFRKDIERISALVEEIEAIADPAVRAATKGLIQSVMDLHGAAWEKALEIVSEAG
Ga0209067_101532681	3300027898	Watersheds	VAANTDFRERVQKIGGLVQEIETIADPVVRANTKELVQALMDLHGVALD
Ga0209006_104007871	3300027908	Forest Soil	VAESKDFREEMQRIGGLVEEMESIADPAVRAASKSLVKSLMDLHGAALEK
Ga0209006_110561501	3300027908	Forest Soil	VAEGKDFREDIQRIGGLVQEIESIADPAVRAATKHLVQSLMDLDGAAME
Ga0209006_112204462	3300027908	Forest Soil	VADSKDFREDIQRIGGLVQEIESIADPAVRAAAKNLVQSLMDLHGVALEKALDIVAEAGEPGMTIIDR
Ga0209698_105368192	3300027911	Watersheds	VADSRDFREDMQRIGGLVQEIESIADPAIRAATKDLVQSLMDLHGAALEKTLDIVADAGEPGMDIIDRLG
Ga0209526_103934481	3300028047	Forest Soil	VSEGRDFREDMQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALENALEIVAEAGEPGMAIIDRLG
Ga0311328_100345211	3300029939	Bog	VAESKDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAAFER
Ga0311340_115731642	3300029943	Palsa	VTDGKDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALEKALD
Ga0302188_102156241	3300029986	Bog	VADSRDFREEMQRIGKLVQEIESSTDPAVRAITKTLMQSLMDLHGAAIEK
Ga0311338_100988781	3300030007	Palsa	VADGKNFREDIERIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALEKALDIVAEAGESGMSIIDRLGRDSLVSS
Ga0311338_101057633	3300030007	Palsa	VADSRDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAAVEKALDIVAEAGEPGMTIIDRLGRDSL
Ga0302274_103942072	3300030041	Bog	VAESKDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAAFERTLE
Ga0302192_104709361	3300030507	Bog	VADSRDFREEMQRIGKLVQEIESSTDPAVRAITKTLMQSLMDLHGAAIEKALDIVADAGEQG
Ga0311372_119868961	3300030520	Palsa	VADGKDFREDIERIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAAL
Ga0210278_10891051	3300030596	Soil	VKDFRGDIQRIGGLVQDMESIADPAVRATAKDMVQSLMDLHGAALEKALDIVAEAGDSGMAII
Ga0307482_11429242	3300030730	Hardwood Forest Soil	VAAGKDFREDMQRIGGLVQEIESIADPAVRAAAKNLMQLLMDLHGAALEKTLDIVAEAGEPGMNII
Ga0265462_118902231	3300030738	Soil	VADGKDFREDMQRIGGLVQEIESIADPAVRAAAKNLMQLLMDMHGAALEKTLDIVAEAGEPGMNIIDRLGLDSLEM
Ga0265461_132749261	3300030743	Soil	VAEGKDFRGDIQRIGELVQEVESIADPAVRAATKDLVQSLMDLYGAALEKALDI
Ga0170834_1075283502	3300031057	Forest Soil	VADDRDFRDDMQRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALEKALDIVAEAGE
Ga0302325_122281662	3300031234	Palsa	VADNRDFREDMQRISGLVEEIEAIADPAVRAASKGLIQSVMDLQGAAWEKALDIVSEAGEPGMGIIDRLGRDSLV
Ga0302140_109633931	3300031261	Bog	VPDARDFREEMQRIGGLVQEIEAIADPAVRAATKGLVQSLMDLQGAALEKALDIIFESGEPGK
Ga0307484_1034602	3300031663	Hardwood Forest Soil	VAAGKDFREDMQRIGGLVQEIESIADPAVRAAAKNLMQLLMDLHGAALEKTLDIVAEAGE
Ga0310686_1155832312	3300031708	Soil	VVNGKDFREDIQRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALEKALDIVADAGEPGINIIDRLGR
Ga0307476_100772671	3300031715	Hardwood Forest Soil	VSEGRDFREDMQRIGGLVQEIESIADPAARAATKNLVQSLMDLHGAALENALEIVAEAGE
Ga0307474_107833422	3300031718	Hardwood Forest Soil	VADSRDFREDIQRIGGLVQEIESIADPAVRAATKNLVQSLMDLHGAALEKALDIVADAGETGMTIIDCLGRDPLV
Ga0307478_111535542	3300031823	Hardwood Forest Soil	VADGKNVREDMQRIGGLVQEIESIADPAVRAATKDLVQSLMDLHGAALEKAL
Ga0302315_105107681	3300031837	Palsa	VADSRDFREEMQRIGKLVQEIESSTDPAVRAITKTLMQSLMDLHGAAIE
Ga0348332_122570221	3300032515	Plant Litter	VSDSRDFREDIQRIGNLVQEIESSADPAVRAITKTLMQSLMDLHGAAIEKALDIVADSGEQGMAIIDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098156

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences