Metagenome / Metatranscriptome Family F098142

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098142
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	69 residues
Representative Sequence	VLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK
Number of Associated Samples	96
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.385 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.269 % of family members)
Environment Ontology (ENVO)	Unclassified (34.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.29% β-sheet: 15.71% Coil/Unstructured: 40.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13289	SIR2_2	42.31
PF13191	AAA_16	1.92
PF01614	IclR	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
All Organisms	root	All Organisms	34.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
cellular organisms	root	All Organisms → cellular organisms	34.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	18.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	16.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	18.27 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	7.69 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	18.27 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.73 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	3.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	18.27 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	6.73 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	3.85 %
Candidatus Brocadiia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Methanosarcinales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	18.27 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	6.73 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	3.85 %
Candidatus Brocadiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Methanosarcinaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae	18.27 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	6.73 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	3.85 %
Candidatus Brocadiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Methanosarcina	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	18.27 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	6.73 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	3.85 %
Candidatus Jettenia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Methanosarcina barkeri	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	11.54 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	6.73 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	3.85 %
Candidatus Jettenia caeni	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia → Candidatus Jettenia caeni	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Methanosarcina barkeri	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	11.54 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	6.73 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	3.85 %
Candidatus Jettenia caeni	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia → Candidatus Jettenia caeni	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8905853	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	2361	Open in IMG/M
2162886007\|SwRhRL2b_contig_1054289	Not Available	909	Open in IMG/M
3300000550\|F24TB_10122351	Not Available	618	Open in IMG/M
3300000550\|F24TB_11500439	Not Available	618	Open in IMG/M
3300000956\|JGI10216J12902_103284673	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1491	Open in IMG/M
3300001431\|F14TB_100662473	Not Available	1096	Open in IMG/M
3300001991\|JGI24743J22301_10031751	Not Available	1041	Open in IMG/M
3300002126\|JGI24035J26624_1032157	Not Available	574	Open in IMG/M
3300004157\|Ga0062590_101180005	Not Available	745	Open in IMG/M
3300004463\|Ga0063356_105224064	Not Available	558	Open in IMG/M
3300004480\|Ga0062592_101289092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	689	Open in IMG/M
3300005180\|Ga0066685_10018131	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	4155	Open in IMG/M
3300005290\|Ga0065712_10078395	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	3352	Open in IMG/M
3300005328\|Ga0070676_10463028	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005339\|Ga0070660_101071664	Not Available	682	Open in IMG/M
3300005367\|Ga0070667_102000677	Not Available	546	Open in IMG/M
3300005406\|Ga0070703_10070439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1167	Open in IMG/M
3300005441\|Ga0070700_101092019	Not Available	661	Open in IMG/M
3300005451\|Ga0066681_10782936	Not Available	577	Open in IMG/M
3300005457\|Ga0070662_100207244	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia → Candidatus Jettenia caeni	1558	Open in IMG/M
3300005466\|Ga0070685_11487059	Not Available	522	Open in IMG/M
3300005540\|Ga0066697_10581184	Not Available	624	Open in IMG/M
3300005544\|Ga0070686_100013837	Not Available	4631	Open in IMG/M
3300005544\|Ga0070686_101045501	Not Available	672	Open in IMG/M
3300005558\|Ga0066698_10612569	Not Available	732	Open in IMG/M
3300005577\|Ga0068857_100489923	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300005718\|Ga0068866_10895086	Not Available	624	Open in IMG/M
3300005764\|Ga0066903_100798352	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	1687	Open in IMG/M
3300006028\|Ga0070717_10163284	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	1934	Open in IMG/M
3300006163\|Ga0070715_10190664	Not Available	1035	Open in IMG/M
3300006797\|Ga0066659_11189665	Not Available	637	Open in IMG/M
3300009148\|Ga0105243_12419225	Not Available	564	Open in IMG/M
3300009174\|Ga0105241_10348209	Not Available	1285	Open in IMG/M
3300009792\|Ga0126374_11646814	Not Available	532	Open in IMG/M
3300010360\|Ga0126372_10150832	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	1857	Open in IMG/M
3300010361\|Ga0126378_11347642	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	807	Open in IMG/M
3300010362\|Ga0126377_13335727	Not Available	519	Open in IMG/M
3300010403\|Ga0134123_12430251	Not Available	589	Open in IMG/M
3300012200\|Ga0137382_10019410	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	3864	Open in IMG/M
3300012210\|Ga0137378_10960748	Not Available	768	Open in IMG/M
3300012211\|Ga0137377_11912533	Not Available	510	Open in IMG/M
3300012285\|Ga0137370_10059762	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	2066	Open in IMG/M
3300012354\|Ga0137366_10121936	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1968	Open in IMG/M
3300012357\|Ga0137384_11398445	Not Available	548	Open in IMG/M
3300012362\|Ga0137361_10400147	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300012473\|Ga0157340_1018990	Not Available	565	Open in IMG/M
3300012509\|Ga0157334_1065649	Not Available	535	Open in IMG/M
3300012885\|Ga0157287_1005719	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300012913\|Ga0157298_10380586	Not Available	530	Open in IMG/M
3300012918\|Ga0137396_10752966	Not Available	717	Open in IMG/M
3300012924\|Ga0137413_10028397	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	3040	Open in IMG/M
3300012951\|Ga0164300_10209172	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	962	Open in IMG/M
3300012958\|Ga0164299_10651573	Not Available	728	Open in IMG/M
3300012958\|Ga0164299_10844596	Not Available	658	Open in IMG/M
3300012961\|Ga0164302_11023688	Not Available	645	Open in IMG/M
3300012971\|Ga0126369_12060595	Not Available	658	Open in IMG/M
3300012985\|Ga0164308_12247793	Not Available	507	Open in IMG/M
3300012988\|Ga0164306_10758255	Not Available	777	Open in IMG/M
3300012989\|Ga0164305_10282122	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300013105\|Ga0157369_11698087	Not Available	642	Open in IMG/M
3300013308\|Ga0157375_10710137	Not Available	1159	Open in IMG/M
3300014745\|Ga0157377_10462027	Not Available	879	Open in IMG/M
3300015371\|Ga0132258_13298068	Not Available	1111	Open in IMG/M
3300015373\|Ga0132257_100274584	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	2019	Open in IMG/M
3300015373\|Ga0132257_101412244	Not Available	886	Open in IMG/M
3300015373\|Ga0132257_103627062	Not Available	562	Open in IMG/M
3300015374\|Ga0132255_100517090	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	1756	Open in IMG/M
3300015374\|Ga0132255_105402271	Not Available	541	Open in IMG/M
3300018028\|Ga0184608_10154898	Not Available	990	Open in IMG/M
3300018073\|Ga0184624_10345113	Not Available	666	Open in IMG/M
3300018081\|Ga0184625_10054565	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	2005	Open in IMG/M
3300019356\|Ga0173481_10631003	Not Available	568	Open in IMG/M
3300019872\|Ga0193754_1000192	Not Available	4449	Open in IMG/M
3300019881\|Ga0193707_1071642	Not Available	1075	Open in IMG/M
3300021413\|Ga0193750_1058906	Not Available	781	Open in IMG/M
3300021510\|Ga0222621_1022156	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1280	Open in IMG/M
3300022756\|Ga0222622_11360668	Not Available	522	Open in IMG/M
3300023073\|Ga0247744_1069444	Not Available	599	Open in IMG/M
3300024181\|Ga0247693_1002369	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	2190	Open in IMG/M
3300025903\|Ga0207680_10191827	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1388	Open in IMG/M
3300025920\|Ga0207649_11045992	Not Available	643	Open in IMG/M
3300025930\|Ga0207701_10113339	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	2422	Open in IMG/M
3300025930\|Ga0207701_10209001	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	1713	Open in IMG/M
3300025930\|Ga0207701_10905127	Not Available	739	Open in IMG/M
3300025949\|Ga0207667_11709586	Not Available	595	Open in IMG/M
3300026095\|Ga0207676_10268493	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1544	Open in IMG/M
3300026121\|Ga0207683_10156629	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	2058	Open in IMG/M
3300026540\|Ga0209376_1257023	Not Available	742	Open in IMG/M
3300027618\|Ga0208736_1056138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	973	Open in IMG/M
3300028381\|Ga0268264_12282930	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	548	Open in IMG/M
3300028710\|Ga0307322_10163291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	597	Open in IMG/M
3300028790\|Ga0307283_10032086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1174	Open in IMG/M
3300028819\|Ga0307296_10766292	Not Available	526	Open in IMG/M
3300028875\|Ga0307289_10220255	Not Available	780	Open in IMG/M
3300030847\|Ga0075405_12055568	Not Available	585	Open in IMG/M
3300031474\|Ga0170818_100191517	Not Available	709	Open in IMG/M
3300031547\|Ga0310887_10960424	Not Available	544	Open in IMG/M
3300031908\|Ga0310900_10948617	Not Available	705	Open in IMG/M
3300031912\|Ga0306921_12423859	Not Available	547	Open in IMG/M
3300032000\|Ga0310903_10224241	Not Available	892	Open in IMG/M
3300032122\|Ga0310895_10221774	Not Available	860	Open in IMG/M
3300032174\|Ga0307470_10593712	Not Available	827	Open in IMG/M
3300032261\|Ga0306920_102461235	Not Available	717	Open in IMG/M
3300033475\|Ga0310811_10303893	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri	1833	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.12%
Host-Associated	Host-Associated	27.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.35%
Plants	Host-Associated → Plants	27.88%
Aquatic	Environmental → Aquatic	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.58%
Sediment	Environmental → Aquatic → Sediment	4.81%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.77%
Loam	Environmental → Terrestrial → Soil → Loam	10.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.81%
Ice	Environmental → Aquatic → Freshwater → Ice	0.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002126	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023073	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027618	Polar desert microbial communities from Antarctic Dry Valleys - UQ255 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300030847	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_02360840	2088090015	Soil	RLGDWNFRVLFQTLRARQQFSSIVVLKPPDENDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWATFERTKK
SwRhRL2b_0797.00005490	2162886007	Switchgrass Rhizosphere	RLGDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKK
F24TB_101223512	3300000550	Soil	RVLFQTLRARQQFSSIVVLKPLDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWAAFERTKK*
F24TB_115004391	3300000550	Soil	RVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDKRWAAFERTKK*
JGI10216J12902_1032846733	3300000956	Soil	ARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTNK*
F14TB_1006624732	3300001431	Soil	ARQQFSSIVVLKPLDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWAAFERTKK*
JGI24743J22301_100317511	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	LRARQQFSSIVVLKSPXETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLNERWTTFEQTKK*
JGI24035J26624_10321572	3300002126	Corn, Switchgrass And Miscanthus Rhizosphere	GDWNFRVLFQTLRARQQFSSIVVLKPPDEXDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWKIFEQTKK*
Ga0062590_1011800052	3300004157	Soil	QTLRARQQFSSIVVLKPPDERDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWTIFEQTKK*
Ga0063356_1052240641	3300004463	Arabidopsis Thaliana Rhizosphere	LFQTLRARQQFSSIVVLKPPDERDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWTIFEQTKK*
Ga0062592_1012890922	3300004480	Soil	RLGDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLGERWATFERTKK*
Ga0066685_100181311	3300005180	Soil	ARQQFSSIVVLKPPDETDPNRVAHQTYFEKFYGALDMKIFWGTAREFSSQLEERWEAFKT
Ga0065712_100783953	3300005290	Miscanthus Rhizosphere	YRLGDWNFRVLFQTLRARQQFSSIVVLKPPEETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLNERWTTFEQTKK*
Ga0070676_104630281	3300005328	Miscanthus Rhizosphere	TLRARQQFSSIVVLKPPDETDPNRAAHRAYFEKFYGAMEMKVFWGTAREFSSQLDERWKIFEQTKK*
Ga0070660_1010716641	3300005339	Corn Rhizosphere	VLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK*
Ga0070667_1020006771	3300005367	Switchgrass Rhizosphere	LFQTLRARQQFSSIVVSKPLDETDPTRAAHQAYFEKFYGTLEMKVFWGTAREFSSQLDERWKTFERTKK*
Ga0070703_100704391	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	IGYGLRDWNFRVLFQTLRARQQFSSIVVSKPLDETDPTRAAHQAYFEKFYGTLEMKVFWGTAREFSSQLDERWKTFERTKK*
Ga0070700_1010920191	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	QFSSIVVSKPLDETDPTRAAHQAYFEKFYGTLEMKVFWGTAREFSSQLDERWKTFERTKK
Ga0066681_107829361	3300005451	Soil	FQTLRARQQFSSIVVLKPPDETDPNRVAHQTYFEKFYGALDMKIFWGTAREFSSQLEERWEAFKT*
Ga0070662_1002072441	3300005457	Corn Rhizosphere	SSIVVLKPPDETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWKIFEQTKK*
Ga0070685_114870591	3300005466	Switchgrass Rhizosphere	DWNFRVLFQTLRARQQFSSIVVSKPLDETDPTRAAHQAYFEKFYGTLEMKVFWGTAREFSSQLDERWKTFERTKK*
Ga0066697_105811841	3300005540	Soil	SSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLGERWATFERTKK*
Ga0070686_1000138374	3300005544	Switchgrass Rhizosphere	TLRARQQFSSIVVLKPPDESDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWKIFEQTKK*
Ga0070686_1010455011	3300005544	Switchgrass Rhizosphere	WNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKNER*
Ga0066698_106125692	3300005558	Soil	LRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLGERWATFERIKK*
Ga0068857_1004899232	3300005577	Corn Rhizosphere	LRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLEERWATFERTKK*
Ga0068866_108950861	3300005718	Miscanthus Rhizosphere	DWNFRVLFQTLRARQQFSSIVVLKSPEETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLNERWTTFEQTKK*
Ga0066903_1007983523	3300005764	Tropical Forest Soil	FQTLRARQQFSSIVILKPPDETDPNRVAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWATFERNKK*
Ga0070717_101632843	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FRVLFQTLRARQQFSSIVVLKPPDENDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLGERWTTFEQTKK*
Ga0070715_101906641	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	NFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK*
Ga0066659_111896651	3300006797	Soil	LRARQQFSSVVVLKPLDEKERNRVAQQAYFENYFAAMEMKIFWGTAREFGAQLQERWLAFAA*
Ga0105243_124192251	3300009148	Miscanthus Rhizosphere	DWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHRAYFEKFYGALDMKVFWGTAREFSSQLNERWQLSNEPKNER*
Ga0105241_103482091	3300009174	Corn Rhizosphere	SIVVLKAPDESDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWKIFEQTKK*
Ga0126374_116468141	3300009792	Tropical Forest Soil	DWNFRVLFQTLRARQQFSSIVVLKPPDESDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWTTFERTKK*
Ga0126372_101508321	3300010360	Tropical Forest Soil	DWNFRVLFQTLRARQQFSSMVVLKPPNETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSAQLDERWATFEQTRK*
Ga0126378_113476422	3300010361	Tropical Forest Soil	LGDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAAEFSSQLDERWATFERTKK*
Ga0126377_133357271	3300010362	Tropical Forest Soil	FRFLFQTLRSRQQFSSIVVFKPSDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSAQLDERWATFEQTRK*
Ga0134123_124302512	3300010403	Terrestrial Soil	LRARQQFSSIVVSKPLDETDPTRAAHQAYFEKFYGTLEMKVFWGTAREFSSQLDERWKTFERTKK*
Ga0137382_100194103	3300012200	Vadose Zone Soil	RLGDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKK*
Ga0137378_109607481	3300012210	Vadose Zone Soil	QFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKK
Ga0137377_119125332	3300012211	Vadose Zone Soil	FQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKNGR*
Ga0137370_100597623	3300012285	Vadose Zone Soil	FQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKK*
Ga0137366_101219361	3300012354	Vadose Zone Soil	QQFSSIVVLKPPDETDPNRVAHQTYFEKFYGALDMKIFWGTAREFSSQLEERWEAFKT*
Ga0137384_113984452	3300012357	Vadose Zone Soil	GDWNFRVLFQTLRARQQFSSIVVLKPPDQTDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKK*
Ga0137361_104001472	3300012362	Vadose Zone Soil	FRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKK*
Ga0157340_10189902	3300012473	Arabidopsis Rhizosphere	FRVLFQTLRARQQFSSVVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWTTFEQTKK*
Ga0157334_10656492	3300012509	Soil	ARQQFSSIVVLKPPDETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLNDRWAAFEQAKK*
Ga0157287_10057192	3300012885	Soil	NFRVLFQTLRARQQFSSIVVLKPPEETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWKIFEQTKK*
Ga0157298_103805862	3300012913	Soil	FQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWKIFEQTKK*
Ga0137396_107529662	3300012918	Vadose Zone Soil	QQFSSIVVLKPPDEADPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWATFEQTKR*
Ga0137413_100283971	3300012924	Vadose Zone Soil	NFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWATFEQTKR*
Ga0164300_102091722	3300012951	Soil	LGDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDGRWTTFEQTKK*
Ga0164299_106515731	3300012958	Soil	QTLRARQQFSSIVALKPPDETDPNRAAHQASFEKFYGAMDRKVFWGTAREFSTQLDERWTTFEQTKK*
Ga0164299_108445961	3300012958	Soil	QQFSSIVVLKPPDETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWAAFEQTKK*
Ga0164302_110236881	3300012961	Soil	DWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKK*
Ga0126369_120605951	3300012971	Tropical Forest Soil	RARQQFSSIVVLKPPHVTDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDKRWATFEGTKK*
Ga0164308_122477931	3300012985	Soil	RQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK*
Ga0164306_107582552	3300012988	Soil	GDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWKMFEQTKK*
Ga0164305_102821222	3300012989	Soil	RVIFQAPRARQQFSSVIVLKPLDEKEGNRAAQQAYFEKYFGAIEMKIFWGTAREFGAQLQERWLAFAA*
Ga0157369_116980872	3300013105	Corn Rhizosphere	VLFQTLRARQQFSSIVVLKPPEETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLNERWTTFEQTKK*
Ga0157375_107101372	3300013308	Miscanthus Rhizosphere	GDWNFRVLFQTLRARQQFSSIVVLKPPEETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLNERWTTFEQTKK*
Ga0157377_104620271	3300014745	Miscanthus Rhizosphere	QQFSSIVVLKPPDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK*
Ga0132258_132980681	3300015371	Arabidopsis Rhizosphere	TLRARQQFSSIVVLKPPDETEPNRAAYQAYFEKFYGALDMKVFWGTAREFSSQLNERWATFERTKK*
Ga0132257_1002745841	3300015373	Arabidopsis Rhizosphere	RLGDWNFRVLFQTLRARQQFNSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLEERWRAFAA*
Ga0132257_1014122442	3300015373	Arabidopsis Rhizosphere	IVVLKPPDETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLNERWAAFEQTKK*
Ga0132257_1036270622	3300015373	Arabidopsis Rhizosphere	LRARQQFSSIVVLKPPDETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK*
Ga0132255_1005170901	3300015374	Arabidopsis Rhizosphere	VLFQTLRARQQFSSIVVLKPPDETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK*
Ga0132255_1054022711	3300015374	Arabidopsis Rhizosphere	FRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHRAYFEKFYGALDMKVFWGTAREFSSQLDERWATFERTRK*
Ga0184608_101548981	3300018028	Groundwater Sediment	QALRARQQFSSVVVLKPLDEKERNRVAQQAYFENYFAAMEMKIFWGTAREFGAQLQERWLAFAA
Ga0184624_103451131	3300018073	Groundwater Sediment	RARQQFSSVIVLKPLDEKEGNRAAQQAYFEKYFGAIEMKIFWGTAREFGAQLQERWLAFA
Ga0184625_100545653	3300018081	Groundwater Sediment	FRVLFQTLRARQQFSSIVVLKPPDEIDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKK
Ga0173481_106310032	3300019356	Soil	QQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWATFERTK
Ga0193754_10001921	3300019872	Soil	IVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLGERWATFERTKNER
Ga0193707_10716422	3300019881	Soil	FRVIFQTLRARQQFSSIVVLKPPDETDPNRVAHQTYFEKFYGALDMKIFWGTAREFSSQLEERWEAFKT
Ga0193750_10589061	3300021413	Soil	NFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWATFERTKR
Ga0222621_10221563	3300021510	Groundwater Sediment	FRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLGERWATFERTKNER
Ga0222622_113606682	3300022756	Groundwater Sediment	LFQTLRARQQFSSIVVLKPPDEADPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK
Ga0247744_10694441	3300023073	Soil	QQFSSIVVLKPPDESDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWKIFEQTK
Ga0247693_10023693	3300024181	Soil	GDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERTKK
Ga0207680_101918273	3300025903	Switchgrass Rhizosphere	QQFSSIVVLKPPEETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLNERWTTFEQTK
Ga0207649_110459921	3300025920	Corn Rhizosphere	QFSSIVVLKPPDESDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWKIFEQTKK
Ga0207701_101133393	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRMAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK
Ga0207701_102090013	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRVAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWAAFEQTKK
Ga0207701_109051271	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	YRLGDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTAREFSSQLDERWATFERSKK
Ga0207667_117095861	3300025949	Corn Rhizosphere	DWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGAMDMKVFWGTAREFSSQLDERWKIFEQTKK
Ga0207676_102684933	3300026095	Switchgrass Rhizosphere	DWNFRVLFQTLRARQQFSSIVVLKSPEETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLNERWTTFEQTKK
Ga0207683_101566291	3300026121	Miscanthus Rhizosphere	RARQQFSSIVVLKPPDETDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLNERWTTFEQTKK
Ga0209376_12570231	3300026540	Soil	NFRVIFQTLRARQQFSSIVVLKPPDETDPNRVAHQTYFEKFYGALDMKIFWGTAREFSSQLEERWEAFKT
Ga0208736_10561383	3300027618	Polar Desert	YRLGDWNFRVIFQALRARQQFSSIVVMKPLEESEQNRGAQQVYFEKYFAAMEMKIFWGTAREFASELETRWRGFKP
Ga0268264_122829302	3300028381	Switchgrass Rhizosphere	GYRLGDWNFRVLFQTLRARQQFSSIVVLKPPDEADPNRMAHRAYFEKLYGAMDMKVFWGTAREFSSQLDERWTTFEQTKK
Ga0307322_101632912	3300028710	Soil	RLGDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLGERWATFERIKK
Ga0307283_100320861	3300028790	Soil	RVLFQTLRARQQFSSIVVLKPPDEADPNRTAHRAYFEKFYGALDMKVFWGTAREFSSQLDERWTTFGQTKK
Ga0307296_107662921	3300028819	Soil	ARQQFSSIVVLKPPDEADPNRAAHRAYFEKFYGALDMKVFWGTAREFSSQLDERWTTFEQTKK
Ga0307289_102202551	3300028875	Soil	FSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLGERWATFERTKNE
Ga0075405_120555682	3300030847	Soil	VLFQTLRARQQFSSIVVLKPPDETDPNRVAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWATFERTKK
Ga0170818_1001915172	3300031474	Forest Soil	VLFQTLRARQQFSSIVVLKPPDDADPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDDRWATFEQTKK
Ga0310887_109604242	3300031547	Soil	LFQTLRARQQFSSIVVLKPPDESDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWATFERTKK
Ga0310900_109486171	3300031908	Soil	FSSIVVLKPPDEADPNRMAHRAYFEKFYGAMDMKVFWGTAREFSSQLDGRWTTFEQTKK
Ga0306921_124238592	3300031912	Soil	CVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKIFWGTARELSSQLDERWATFEQTKK
Ga0310903_102242412	3300032000	Soil	YRLGDWNFRVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWATFERTKK
Ga0310895_102217742	3300032122	Soil	LFQTLRARQQFSSVVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWATFERTKK
Ga0307470_105937121	3300032174	Hardwood Forest Soil	RARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTAREFSSQLDERWTTFEQTKK
Ga0306920_1024612351	3300032261	Soil	RVLFQTLRARQQFSSIVVLKPPDETDPNRAAHQAYFEKFYGALDMKVFWGTARGFSSQLDERWATFERTKR
Ga0310811_103038931	3300033475	Soil	ARQQFSSIVVLKPPDERDPNRAAHRAYFEKFYGAMDMKVFWGTAREFSSQLDERWTIFEQTKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098142

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences