Metagenome / Metatranscriptome Family F098140

Basic Information
Family ID	F098140
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	40 residues
Representative Sequence	VWRNDRRRARLHPDPYAGLADDELSPLDLDDTGSRDSHLN
Number of Associated Samples	97
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	98.08 %
% of genes from short scaffolds (< 2000 bps)	89.42 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Most Common Taxonomy
Group	Bacteria (65.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.115 % of family members)
Environment Ontology (ENVO)	Unclassified (19.231 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.962 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.65% β-sheet: 0.00% Coil/Unstructured: 82.35%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00270	DEAD	60.58
PF13234	rRNA_proc-arch	8.65
PF00271	Helicase_C	4.81
PF04149	DUF397	3.85
PF02913	FAD-oxidase_C	1.92
PF00902	TatC	1.92
PF08241	Methyltransf_11	0.96
PF01381	HTH_3	0.96
PF13565	HTH_32	0.96
PF01152	Bac_globin	0.96
PF13546	DDE_5	0.96
PF01565	FAD_binding_4	0.96
PF02132	RecR	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	1.92
COG0805	Twin-arginine protein secretion pathway component TatC	Intracellular trafficking, secretion, and vesicular transport [U]	1.92
COG0353	Recombinational DNA repair protein RecR	Replication, recombination and repair [L]	0.96
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.42 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	64.42 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	58.65 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	32.69 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	11.54 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	32.69 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	19.23 %
Mycobacteroides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides	4.81 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	19.23 %
Mycobacteroides abscessus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus	4.81 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	19.23 %
Mycobacteroides abscessus subsp. abscessus	subspecies	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus	4.81 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003368\|JGI26340J50214_10084175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	830	Open in IMG/M
3300005329\|Ga0070683_100661039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1001	Open in IMG/M
3300005365\|Ga0070688_101437774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	560	Open in IMG/M
3300005435\|Ga0070714_100438454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1239	Open in IMG/M
3300005436\|Ga0070713_100433184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1232	Open in IMG/M
3300005436\|Ga0070713_100827035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	888	Open in IMG/M
3300005534\|Ga0070735_10008013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	8358	Open in IMG/M
3300005537\|Ga0070730_10189799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1375	Open in IMG/M
3300005537\|Ga0070730_10519637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	763	Open in IMG/M
3300005541\|Ga0070733_10270128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1120	Open in IMG/M
3300005610\|Ga0070763_10155798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1195	Open in IMG/M
3300005614\|Ga0068856_102673458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	504	Open in IMG/M
3300005764\|Ga0066903_105520288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	666	Open in IMG/M
3300005891\|Ga0075283_1032536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	856	Open in IMG/M
3300006028\|Ga0070717_10302787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1421	Open in IMG/M
3300006059\|Ga0075017_100197843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1452	Open in IMG/M
3300006163\|Ga0070715_10210472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	993	Open in IMG/M
3300006237\|Ga0097621_100686680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	942	Open in IMG/M
3300006914\|Ga0075436_100326052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1103	Open in IMG/M
3300009012\|Ga0066710_101271348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1141	Open in IMG/M
3300009137\|Ga0066709_103914347	Not Available	541	Open in IMG/M
3300009522\|Ga0116218_1504472	Not Available	539	Open in IMG/M
3300009524\|Ga0116225_1196979	Not Available	911	Open in IMG/M
3300009792\|Ga0126374_11528216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300010343\|Ga0074044_10241518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1194	Open in IMG/M
3300010343\|Ga0074044_10616689	Not Available	708	Open in IMG/M
3300010359\|Ga0126376_12269003	Not Available	588	Open in IMG/M
3300010379\|Ga0136449_102530241	Not Available	735	Open in IMG/M
3300010880\|Ga0126350_10154496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	559	Open in IMG/M
3300011106\|Ga0151489_1433434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1763	Open in IMG/M
3300012206\|Ga0137380_11548604	Not Available	547	Open in IMG/M
3300012211\|Ga0137377_10636603	Not Available	1002	Open in IMG/M
3300012387\|Ga0134030_1124479	Not Available	833	Open in IMG/M
3300012498\|Ga0157345_1013248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	756	Open in IMG/M
3300012508\|Ga0157315_1068424	Not Available	517	Open in IMG/M
3300012685\|Ga0137397_10590049	Not Available	827	Open in IMG/M
3300014501\|Ga0182024_12883549	Not Available	510	Open in IMG/M
3300014657\|Ga0181522_10032435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	2890	Open in IMG/M
3300015373\|Ga0132257_103611733	Not Available	563	Open in IMG/M
3300016294\|Ga0182041_11423772	Not Available	637	Open in IMG/M
3300016294\|Ga0182041_11542570	Not Available	612	Open in IMG/M
3300016341\|Ga0182035_12007668	Not Available	525	Open in IMG/M
3300016445\|Ga0182038_11912397	Not Available	536	Open in IMG/M
3300017932\|Ga0187814_10050829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus	1527	Open in IMG/M
3300017933\|Ga0187801_10522684	Not Available	501	Open in IMG/M
3300017959\|Ga0187779_10387797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	909	Open in IMG/M
3300017959\|Ga0187779_10735427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	669	Open in IMG/M
3300018058\|Ga0187766_10942509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	611	Open in IMG/M
3300020000\|Ga0193692_1049860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	951	Open in IMG/M
3300020583\|Ga0210401_11187255	Not Available	621	Open in IMG/M
3300021088\|Ga0210404_10341014	Not Available	830	Open in IMG/M
3300021401\|Ga0210393_11295505	Not Available	584	Open in IMG/M
3300021401\|Ga0210393_11400760	Not Available	558	Open in IMG/M
3300021474\|Ga0210390_11386465	Not Available	560	Open in IMG/M
3300021478\|Ga0210402_10581392	Not Available	1038	Open in IMG/M
3300021479\|Ga0210410_10162717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus	1992	Open in IMG/M
3300021559\|Ga0210409_10313575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1412	Open in IMG/M
3300022528\|Ga0242669_1016105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1033	Open in IMG/M
3300025907\|Ga0207645_10161610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1466	Open in IMG/M
3300025908\|Ga0207643_10006646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6200	Open in IMG/M
3300025915\|Ga0207693_11245997	Not Available	559	Open in IMG/M
3300025916\|Ga0207663_10064920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus	2331	Open in IMG/M
3300025929\|Ga0207664_10201608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1718	Open in IMG/M
3300026142\|Ga0207698_10031850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3812	Open in IMG/M
3300026335\|Ga0209804_1062580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus	1785	Open in IMG/M
3300027158\|Ga0208725_1035621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	775	Open in IMG/M
3300027812\|Ga0209656_10073857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1852	Open in IMG/M
3300027857\|Ga0209166_10273058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	894	Open in IMG/M
3300027867\|Ga0209167_10179873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1120	Open in IMG/M
3300027879\|Ga0209169_10032729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	2754	Open in IMG/M
3300027884\|Ga0209275_10214820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1044	Open in IMG/M
3300027986\|Ga0209168_10005266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	8405	Open in IMG/M
3300028381\|Ga0268264_11511148	Not Available	682	Open in IMG/M
3300028806\|Ga0302221_10427798	Not Available	577	Open in IMG/M
3300028884\|Ga0307308_10274709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	807	Open in IMG/M
3300029944\|Ga0311352_10930942	Not Available	672	Open in IMG/M
3300030056\|Ga0302181_10495574	Not Available	515	Open in IMG/M
3300030399\|Ga0311353_10951701	Not Available	722	Open in IMG/M
3300030503\|Ga0311370_10268200	Not Available	2235	Open in IMG/M
3300030580\|Ga0311355_10844033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	837	Open in IMG/M
3300030618\|Ga0311354_10871353	Not Available	842	Open in IMG/M
3300031546\|Ga0318538_10017650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3119	Open in IMG/M
3300031573\|Ga0310915_10600695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	780	Open in IMG/M
3300031668\|Ga0318542_10185887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1044	Open in IMG/M
3300031682\|Ga0318560_10255246	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300031708\|Ga0310686_118189370	Not Available	507	Open in IMG/M
3300031715\|Ga0307476_10330497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1120	Open in IMG/M
3300031715\|Ga0307476_10654926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	778	Open in IMG/M
3300031719\|Ga0306917_11065248	Not Available	630	Open in IMG/M
3300031747\|Ga0318502_10373898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	845	Open in IMG/M
3300031748\|Ga0318492_10350600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	772	Open in IMG/M
3300031819\|Ga0318568_10919045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	541	Open in IMG/M
3300031832\|Ga0318499_10200342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	778	Open in IMG/M
3300031912\|Ga0306921_11105877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	888	Open in IMG/M
3300031945\|Ga0310913_10478527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	884	Open in IMG/M
3300031947\|Ga0310909_10918303	Not Available	718	Open in IMG/M
3300032035\|Ga0310911_10198862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1139	Open in IMG/M
3300032067\|Ga0318524_10422451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	696	Open in IMG/M
3300032770\|Ga0335085_10353126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1723	Open in IMG/M
3300032782\|Ga0335082_10024920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6399	Open in IMG/M
3300032783\|Ga0335079_10730956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1031	Open in IMG/M
3300033158\|Ga0335077_11268983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	717	Open in IMG/M
3300033289\|Ga0310914_10152001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus	2042	Open in IMG/M
3300033290\|Ga0318519_10779458	Not Available	587	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.38%
Host-Associated	Host-Associated	9.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.62%
Plants	Host-Associated → Plants	9.62%
Aquatic	Environmental → Aquatic	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.88%
Peat	Environmental → Terrestrial → Peat	6.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.73%
Freshwater	Environmental → Aquatic → Freshwater	4.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.92%
Sediment	Environmental → Aquatic → Sediment	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.88%
Loam	Environmental → Terrestrial → Soil → Loam	14.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.58%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.19%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.12%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.73%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.88%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012387	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300027158	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098140

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26340J50214_100841751	3300003368	Bog Forest Soil	AEFIVWSNDRRRARLHPDPYADLADDELSPIDLSDTETHDGSLN*
Ga0070683_1006610392	3300005329	Corn Rhizosphere	DRRRARLHPDPYADLADDELSPLDLGDVEDLDDVDDHPDRHLN*
Ga0070688_1014377742	3300005365	Switchgrass Rhizosphere	IIWRHDRRRARLHPDPYADLADDELSPLDLDDTGSRDSHLN*
Ga0070714_1004384542	3300005435	Agricultural Soil	EFIVWRHDRRQARLHPDPYAGLADDELSPLDMDDTGSRTPRA*
Ga0070713_1004331842	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	IVWRHDRRQARLHPDPYAGLADDELSPLDMDDTGSRTPRA*
Ga0070713_1008270352	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	EFIVWRHDRRRARLHPDPYAGLSDDEVSPLDLDERPDNRLN*
Ga0070735_100080138	3300005534	Surface Soil	VAELIVWSNDRRWARLHPDPYPDLDDTDLAPIDLDDDAPAWPR*
Ga0070730_101897993	3300005537	Surface Soil	VAELIVWSNDRRWARLHPDPYPDLDDTELAPIDLDDDTPAWPR*
Ga0070730_105196372	3300005537	Surface Soil	VEVAELIVWSNDRRWARLHPDPYPDLDDTELAPIDLDDTEDRSRFN*
Ga0070733_102701282	3300005541	Surface Soil	AELIVWSNDRRRARLHPDPYAGLADNELSPIDLDETEDRSRFN*
Ga0070763_101557982	3300005610	Soil	RRARLHPDPYAGLADDELSPIDLDETETHDNRLN*
Ga0068856_1026734582	3300005614	Corn Rhizosphere	ARRHPDPYAGLADDELSPLDLNGLDDNLDDRPDSRLN*
Ga0066903_1055202881	3300005764	Tropical Forest Soil	AECLVWSHDRRRARAHPDPYAGLAADQLSPLQLDHTDTPSRLT*
Ga0075283_10325362	3300005891	Rice Paddy Soil	RRRARLHPDPYAGLADDELSPLDLDETDSRDSHLN*
Ga0070717_103027871	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	WRNDRRRARLHPDPYAGLADDEVSPLDVDEPRDNSLN*
Ga0075017_1001978432	3300006059	Watersheds	EFIVWSNDRRRARLHPDPYAGLADDELSPINLDDTETRDSSLN*
Ga0070715_102104722	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	RKARLNPDPYAGLADDELSPIDLNGLDDGSDDRPDSRLN*
Ga0097621_1006866802	3300006237	Miscanthus Rhizosphere	ARLHPDPYAGLADDELSPIDLNGLDDGSDDRPDSRLN*
Ga0075436_1003260521	3300006914	Populus Rhizosphere	HPDPYAGLADDELSPLDLNGLDDNLDDRPDSRLN*
Ga0066710_1012713481	3300009012	Grasslands Soil	AWRHDRRRARLHPDPYAGLADDELSPLDMDETGSRDSHLN
Ga0066709_1039143471	3300009137	Grasslands Soil	HDRRQARLHPDPYAGLADDELSPLDLDDTGSRDSHLN*
Ga0116218_15044722	3300009522	Peatlands Soil	WSNDRRRARLHPDPYAGLADDELSPINLDDTETHDNRLN*
Ga0116225_11969792	3300009524	Peatlands Soil	WANDRRRARLHPDPYAGLADDQLSPTELPDDAENRSSLN*
Ga0126374_115282162	3300009792	Tropical Forest Soil	LRRSWRKARLHPDPYAGLADDELSPLDLDDAGTHDNRLN*
Ga0074044_102415182	3300010343	Bog Forest Soil	AEFIVWSNDRRRARLHPDPYAGLADDELSPINLDDTETHDSRLN*
Ga0074044_106166891	3300010343	Bog Forest Soil	AEFIVWANDRRRARLHPAPYAGLADDELSPLDLADTEV*
Ga0126376_122690031	3300010359	Tropical Forest Soil	RKARLNPDPYAGLGDDELSPINLNGLDDGLNDGSDDHPDSRLN*
Ga0136449_1025302412	3300010379	Peatlands Soil	IVWSNDRRRARRHPDPYAGLADDELYPLDLADTAPPALRQQS*
Ga0126350_101544962	3300010880	Boreal Forest Soil	IVWSNDRRRARLHPDPYAGLADDELSPIELDDTEDRSRFN*
Ga0151489_14334341	3300011106	Soil	EFIVWRHDRRQARLHPDPYAGLADDELSPLDLDDTGSRDSHLN*
Ga0137380_115486042	3300012206	Vadose Zone Soil	RARLHPDPYAGLADDEVSPLDLDDHAEPDVDDRPDSRLN*
Ga0137377_106366032	3300012211	Vadose Zone Soil	WSNDRRRARLHPDLYAGLSDNEVSPLDLNDTGSRVP*
Ga0134030_11244791	3300012387	Grasslands Soil	LIVWRHDRRRARLHPDPYAGLADDELSPLDMDETGSRDSHLN*
Ga0157345_10132481	3300012498	Arabidopsis Rhizosphere	DRRRARLHPDPYAGLADDELSPLDLDDTGSRDSHLN*
Ga0157315_10684242	3300012508	Arabidopsis Rhizosphere	ELIIWRHDRRRARLHPDPYAGLADDELSPLDLDDTGSRDSHLN*
Ga0137397_105900491	3300012685	Vadose Zone Soil	FVVWRHDRRRARLHPDPYAGLADDELSPIDLDDTPDNRLN*
Ga0182024_128835491	3300014501	Permafrost	NDRRRARLHPSPYAGLADDELSPIDLDDTEPRDSRFN*
Ga0181522_100324352	3300014657	Bog	IVWSNDRRRARLHPNPYAGLADDEVSPIELDDTENRNRFN*
Ga0132257_1036117332	3300015373	Arabidopsis Rhizosphere	RRARLHPDPYAGLADDELSPLDPDDTGSRDSHLN*
Ga0182041_114237721	3300016294	Soil	EVIVWNNDRRRARLHPDPYAGLADDELSPIELDDVEDRSSFN
Ga0182041_115425701	3300016294	Soil	DRRRARRHPDPYAGLADEELSPLDLDEAGPGDNHLN
Ga0182035_120076681	3300016341	Soil	NDKRRARLHPDPYAGLADDELSPLDLDETGPSDNRLN
Ga0182038_119123972	3300016445	Soil	LIVWRHDRRKARLHPDPYAGLADDELSPLDLDDAETPDSRLN
Ga0187814_100508292	3300017932	Freshwater Sediment	VWSNDRRRARLHPDPYAGLADDQLSPIELDDTETPSRFN
Ga0187801_105226841	3300017933	Freshwater Sediment	LIVWANDRRRARLHPDPYAGLADDQLSPIELPDDAETRSRFN
Ga0187779_103877973	3300017959	Tropical Peatland	DRRHARRHPDPYAGLADNQLSPLEPQESATGQPPGS
Ga0187779_107354272	3300017959	Tropical Peatland	YFNDRRRARLHQDPYAGLADDELSPIELDDADTGSTLS
Ga0187766_109425091	3300018058	Tropical Peatland	EVAEFVVWSHDRRRARRHPDPYATLADDELSPIELEDAGGRLT
Ga0193692_10498602	3300020000	Soil	IIWRHDRRQARLHPDPYAGLADDELSPLDLDDTGSRDSHLN
Ga0210401_111872551	3300020583	Soil	AEFIVWSNDRRRARLHPDPYADLADDQLSPIELDDTENRSPFT
Ga0210404_103410142	3300021088	Soil	FIVWRHDRRQARLHPDPYAGLADDELSPLDMDDTGSRTPRA
Ga0210393_112955052	3300021401	Soil	IVWSNDRRRARLHPDPYADLADNQLSPIELDDTEDRGRFN
Ga0210393_114007601	3300021401	Soil	VWSNDRRRARLHPDPYAGLADDELSPIELDDTEDRSRFN
Ga0210390_113864652	3300021474	Soil	EFIVWANDRHRARLHPDPYAGLADDELSPLDLADSER
Ga0210402_105813921	3300021478	Soil	FIVWRHDRRQARLHPDPYAGLADDELSPLDLDEAGTHDNRLN
Ga0210410_101627171	3300021479	Soil	VWRHDRRRARLHPDPYADLADDELSPLDMDDTGSRDSHLN
Ga0210409_103135751	3300021559	Soil	VWRHDRRQARLHPDPYAGLADDELSPLDMDDTPDNRLN
Ga0242669_10161052	3300022528	Soil	FIVWSNDRRRARLHPDPYADLADDQLSPIELDDTEDRGRFN
Ga0207645_101616102	3300025907	Miscanthus Rhizosphere	IWRHDRRLARLHPDPYAGLADDDLSPLDLDDTGSRDSHLN
Ga0207643_100066466	3300025908	Miscanthus Rhizosphere	WRHDRRRARLHPDPYAGLADDELSPLDLDDTGSRDSHLN
Ga0207693_112459971	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	EVAEFIVWRNDRRRARLNPDPYADLADDQVAPLDPDEPPDHRLN
Ga0207663_100649201	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	HDRRLARLHPDPYAGLADDDLSPLDLDDTGSRDSHLN
Ga0207664_102016081	3300025929	Agricultural Soil	HDRRQARLHPDPYAGLADDELSPIELPDDEETHSRLN
Ga0207698_100318503	3300026142	Corn Rhizosphere	VWRNDRRRARLHPDPYAGLADDELSPLDLDDTGSRDSHLN
Ga0209804_10625802	3300026335	Soil	WRHDRRQARLHPDPYAGLADDELSPLDMDDTPDNRLN
Ga0208725_10356212	3300027158	Forest Soil	NDRRRARLHPDPYAGLPDDQLSPIEVTDTEDRSRFN
Ga0209656_100738571	3300027812	Bog Forest Soil	SAEFIVWSNDRRRARAHPDPYAGLADNELSPLPLEDTPTDGRFN
Ga0209166_102730582	3300027857	Surface Soil	CVALVEVAELIVWSNDRRWARLHPDPYPDLDDTELAPIDLDDTEDRSRFN
Ga0209167_101798731	3300027867	Surface Soil	AELIVWSNDRRRARLHPDPYAGLADNELSPIDLDETEDRSRFN
Ga0209169_100327292	3300027879	Soil	EVAEFIVWSNDRRRARLHPDPYADLADDQLAPIELDDTEDRSRFN
Ga0209275_102148201	3300027884	Soil	NDRRRANRPSMYAGLADDEPSPLDFDAEPRDEASLR
Ga0209168_100052661	3300027986	Surface Soil	VAELIVWSNDRRWARLHPDPYPDLDDTDLAPIDLDDDAPAWPR
Ga0268264_115111481	3300028381	Switchgrass Rhizosphere	HDRRQARLHPDPYAGLADDELSPLDLDDTGSRDSHLN
Ga0302221_104277981	3300028806	Palsa	NDRRRARLHPSGYADLADDQLAPLDLTDTETRDGTLDEAATL
Ga0307308_102747092	3300028884	Soil	RNDRRRARLHPDPYAGLADDELSPLDLDDTGSRDSHLN
Ga0311352_109309421	3300029944	Palsa	AEFVIWSNDRRRARLHPSGYADLADDQLAPLDLTDTETRDGTLDEAATL
Ga0302181_104955742	3300030056	Palsa	ELIVWNHDRRKARREGSLYANLADDELSPIDLEDTEPPSHTFN
Ga0311353_109517011	3300030399	Palsa	VIWSNDRRRARLHPSGYADLADDQLAPLDLTDTETRDGTLDEAATL
Ga0311370_102682005	3300030503	Palsa	WSNDRRRARLHPSGYADLADDQLAPLDLTDTETRDGTLDEAATL
Ga0311355_108440332	3300030580	Palsa	DRRHARLHPDPYAGLADDELSPLELPDDADTPSSR
Ga0311354_108713531	3300030618	Palsa	FIVWYHDRRHARLHPDPYAGLADDELSPLELPDDAGTHSTLN
Ga0318538_100176501	3300031546	Soil	SHDRRQARLHPDPYAGLADNQLSPLELEDVGRRSP
Ga0310915_106006951	3300031573	Soil	SHDRRHARLHPDPYAGLADNELSPLELPDDAETPSTLN
Ga0318542_101858872	3300031668	Soil	WRHDRRKAQLHPDPYAGLADDELSPLDLDDAGTHDNRLN
Ga0318560_102552461	3300031682	Soil	AEFIVWWNGRLRARQHPDPYAGLADDQLSPIELDDTEPRSRSR
Ga0310686_1181893702	3300031708	Soil	WSHDRRQARLHPDPYAGLADDQLSPIETDDTETPSRFN
Ga0307476_103304971	3300031715	Hardwood Forest Soil	DRRRARLHPDPYADLADNQLSPIELDDTEDRGRFN
Ga0307476_106549261	3300031715	Hardwood Forest Soil	AEFIVWSNDRRRARLHPDPYADLTDNELSPIELPDEADNPSRFN
Ga0306917_110652481	3300031719	Soil	DRRRARLHPDPYADLADDELSPIELDDAEDSSSLN
Ga0318502_103738981	3300031747	Soil	FIVWRHDKRKARLHPDPYAGLADDELSPLDLDEAGTQDSRLN
Ga0318492_103506001	3300031748	Soil	HDRRHARRHPDPYAGLADNELSPLELPDDAETPSTLN
Ga0318568_109190451	3300031819	Soil	VAEFIVWSHDRRQARLHPDPYAGLADNQLSPLELEDVGRRSP
Ga0318499_102003421	3300031832	Soil	HDRRQARLHPDPYAGLADDELSPLDLDEADTHDSRLN
Ga0306921_111058771	3300031912	Soil	VWSHDRRKARLHPDPYTGLADDELSPIELPDDADTPSTLN
Ga0310913_104785271	3300031945	Soil	RHDRRKARLHPDPYAGLADDELSPLDLDDAETPDSRLN
Ga0310909_109183031	3300031947	Soil	HDRRKARLHPDPYAGLADDELSPLDLDDAETPDSRLN
Ga0310911_101988622	3300032035	Soil	NDRRRARLHPDPYADLADDELSPIELDDAEDRSSLN
Ga0318524_104224512	3300032067	Soil	SHDRRRARLNPDPYAGLADTDLSPIELDDTESPSRFN
Ga0335085_103531262	3300032770	Soil	VWSHDRRRARLRPDPYAGLADDEITPLGLGDTGTGDGSFS
Ga0335082_100249206	3300032782	Soil	HDRRQARLHPDPYAGLADDELSPLDPDDTGSRDSHLN
Ga0335079_107309561	3300032783	Soil	EFIVWRHDKRRARLHPDPYAGLADDELSPLDLDDTGTRDNSLN
Ga0335077_112689831	3300033158	Soil	NDRRRARLHPDPYAGLADDELSPLDLDDTGSRDSHLN
Ga0310914_101520012	3300033289	Soil	DRRKAQLHPDPYAGLADDELSPLDLDDAGTHDNRLN
Ga0318519_107794581	3300033290	Soil	IVWRHDKRKARLHPDPYAGLADDELSPLDLDEAGTQDSRLN

Hidden Markov Model


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