Metagenome / Metatranscriptome Family F098136

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F098136
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	120 residues
Representative Sequence	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRDRED
Number of Associated Samples	89
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.50 %
% of genes near scaffold ends (potentially truncated)	30.77 %
% of genes from short scaffolds (< 2000 bps)	85.58 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (98.077 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (25.962 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.885 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 4.64% β-sheet: 19.87% Coil/Unstructured: 75.50%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00069	Pkinase	7.69
PF07883	Cupin_2	2.88
PF12697	Abhydrolase_6	1.92
PF00561	Abhydrolase_1	1.92
PF11695	DUF3291	1.92
PF01965	DJ-1_PfpI	1.92
PF01872	RibD_C	1.92
PF10417	1-cysPrx_C	0.96
PF00756	Esterase	0.96
PF13532	2OG-FeII_Oxy_2	0.96
PF12695	Abhydrolase_5	0.96
PF07676	PD40	0.96
PF00578	AhpC-TSA	0.96
PF10282	Lactonase	0.96
PF13004	BACON	0.96
PF17124	ThiJ_like	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	30.77
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.92
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	81.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.88 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	79.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.88 %
Unclassified	root	N/A	1.92 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.96 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	25.96 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	7.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Unclassified	root	N/A	1.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	25.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	7.69 %
Unclassified	root	N/A	1.92 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.96 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.96 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	25.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	7.69 %
Unclassified	root	N/A	1.92 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.96 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.96 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.96 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	25.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	7.69 %
Unclassified	root	N/A	1.92 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.96 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.96 %
Mesorhizobium ephedrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ephedrae	0.96 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	25.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	7.69 %
Unclassified	root	N/A	1.92 %
Arenibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Arenibacter	0.96 %
Rhizobium aethiopicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium aethiopicum	0.96 %
Mesorhizobium ephedrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ephedrae	0.96 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	25.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	7.69 %
Unclassified	root	N/A	1.92 %
Arenibacter latericius	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Arenibacter → Arenibacter latericius	0.96 %
Rhizobium aethiopicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium aethiopicum	0.96 %
Mesorhizobium ephedrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ephedrae	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9061764	Not Available	1446	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11487683	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	503	Open in IMG/M
3300003267\|soilL1_10113351	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1072	Open in IMG/M
3300003321\|soilH1_10319728	All Organisms → cellular organisms → Bacteria	2016	Open in IMG/M
3300003321\|soilH1_10329891	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	3132	Open in IMG/M
3300003324\|soilH2_10048736	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4537	Open in IMG/M
3300003987\|Ga0055471_10098099	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	856	Open in IMG/M
3300003999\|Ga0055469_10085413	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	888	Open in IMG/M
3300004156\|Ga0062589_100689977	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	904	Open in IMG/M
3300004479\|Ga0062595_100229354	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1182	Open in IMG/M
3300004479\|Ga0062595_102196999	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	540	Open in IMG/M
3300004800\|Ga0058861_10089271	All Organisms → cellular organisms → Bacteria	2492	Open in IMG/M
3300005329\|Ga0070683_100985572	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	809	Open in IMG/M
3300005329\|Ga0070683_101760679	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	596	Open in IMG/M
3300005331\|Ga0070670_100800509	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300005366\|Ga0070659_100074408	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2706	Open in IMG/M
3300005440\|Ga0070705_101563504	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	554	Open in IMG/M
3300005455\|Ga0070663_101421978	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	615	Open in IMG/M
3300005458\|Ga0070681_10502320	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300005535\|Ga0070684_100321730	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1421	Open in IMG/M
3300005535\|Ga0070684_101594143	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	616	Open in IMG/M
3300005539\|Ga0068853_101953566	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	569	Open in IMG/M
3300005564\|Ga0070664_100386856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1278	Open in IMG/M
3300005577\|Ga0068857_101295666	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	707	Open in IMG/M
3300005616\|Ga0068852_102176086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Arenibacter → Arenibacter latericius	576	Open in IMG/M
3300005617\|Ga0068859_101728836	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	691	Open in IMG/M
3300005618\|Ga0068864_100360607	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300005719\|Ga0068861_100930597	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	825	Open in IMG/M
3300005893\|Ga0075278_1058539	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	590	Open in IMG/M
3300005937\|Ga0081455_10694675	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	649	Open in IMG/M
3300006163\|Ga0070715_10247431	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	930	Open in IMG/M
3300006175\|Ga0070712_101048075	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	707	Open in IMG/M
3300006755\|Ga0079222_10254202	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1108	Open in IMG/M
3300006806\|Ga0079220_10241522	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1074	Open in IMG/M
3300006844\|Ga0075428_101463282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium aethiopicum	716	Open in IMG/M
3300006845\|Ga0075421_100751343	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300006852\|Ga0075433_10545015	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1020	Open in IMG/M
3300006854\|Ga0075425_101620806	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	729	Open in IMG/M
3300006871\|Ga0075434_102443754	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	524	Open in IMG/M
3300006904\|Ga0075424_102663715	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	522	Open in IMG/M
3300007076\|Ga0075435_101372725	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	619	Open in IMG/M
3300009147\|Ga0114129_12125091	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	677	Open in IMG/M
3300009147\|Ga0114129_12906382	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	566	Open in IMG/M
3300009162\|Ga0075423_10697008	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1072	Open in IMG/M
3300010040\|Ga0126308_10403068	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	913	Open in IMG/M
3300010166\|Ga0126306_11395341	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	579	Open in IMG/M
3300010371\|Ga0134125_11503645	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	733	Open in IMG/M
3300010399\|Ga0134127_11919008	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	669	Open in IMG/M
3300010401\|Ga0134121_12818337	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	532	Open in IMG/M
3300012212\|Ga0150985_114876454	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	533	Open in IMG/M
3300012212\|Ga0150985_120517893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium ephedrae	647	Open in IMG/M
3300012898\|Ga0157293_10152713	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	654	Open in IMG/M
3300012910\|Ga0157308_10253098	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	622	Open in IMG/M
3300012914\|Ga0157297_10474540	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	520	Open in IMG/M
3300012915\|Ga0157302_10042569	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300012957\|Ga0164303_10488023	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	785	Open in IMG/M
3300012986\|Ga0164304_10247851	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1192	Open in IMG/M
3300012986\|Ga0164304_10680396	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	779	Open in IMG/M
3300012987\|Ga0164307_10744700	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	773	Open in IMG/M
3300012989\|Ga0164305_11446250	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	607	Open in IMG/M
3300014301\|Ga0075323_1099190	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	624	Open in IMG/M
3300014968\|Ga0157379_11150909	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	745	Open in IMG/M
3300015077\|Ga0173483_10015382	All Organisms → cellular organisms → Bacteria	2651	Open in IMG/M
3300015371\|Ga0132258_10125518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6109	Open in IMG/M
3300015371\|Ga0132258_10563660	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2856	Open in IMG/M
3300015371\|Ga0132258_13515413	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300015371\|Ga0132258_13580607	All Organisms → cellular organisms → Bacteria → FCB group	1062	Open in IMG/M
3300015372\|Ga0132256_100081754	All Organisms → cellular organisms → Bacteria	3094	Open in IMG/M
3300015372\|Ga0132256_101916866	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	700	Open in IMG/M
3300015373\|Ga0132257_100153054	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2704	Open in IMG/M
3300015373\|Ga0132257_100176029	All Organisms → cellular organisms → Bacteria	2522	Open in IMG/M
3300015374\|Ga0132255_100450845	All Organisms → cellular organisms → Bacteria	1883	Open in IMG/M
3300015374\|Ga0132255_105931041	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	517	Open in IMG/M
3300025537\|Ga0210061_1026362	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	955	Open in IMG/M
3300025908\|Ga0207643_10832095	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	598	Open in IMG/M
3300025912\|Ga0207707_10188336	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1800	Open in IMG/M
3300025915\|Ga0207693_11466531	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	504	Open in IMG/M
3300025917\|Ga0207660_10245686	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1411	Open in IMG/M
3300025942\|Ga0207689_11592031	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	544	Open in IMG/M
3300026067\|Ga0207678_11116571	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	698	Open in IMG/M
3300026088\|Ga0207641_12252226	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	545	Open in IMG/M
3300026095\|Ga0207676_12623537	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	500	Open in IMG/M
3300026116\|Ga0207674_10812326	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	902	Open in IMG/M
3300026118\|Ga0207675_101688375	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	653	Open in IMG/M
3300027682\|Ga0209971_1084811	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	772	Open in IMG/M
3300027909\|Ga0209382_11390686	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	706	Open in IMG/M
3300028596\|Ga0247821_11220257	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	512	Open in IMG/M
3300028597\|Ga0247820_10934775	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	616	Open in IMG/M
3300028809\|Ga0247824_10486031	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	726	Open in IMG/M
3300028812\|Ga0247825_10004415	All Organisms → cellular organisms → Bacteria	9241	Open in IMG/M
3300028889\|Ga0247827_10642041	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	685	Open in IMG/M
3300031547\|Ga0310887_10463041	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	758	Open in IMG/M
3300031716\|Ga0310813_10024719	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4159	Open in IMG/M
3300031716\|Ga0310813_10173221	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1752	Open in IMG/M
3300031716\|Ga0310813_11524764	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	623	Open in IMG/M
3300031852\|Ga0307410_10840180	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	783	Open in IMG/M
3300031854\|Ga0310904_11095581	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	571	Open in IMG/M
3300031858\|Ga0310892_11055814	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	575	Open in IMG/M
3300031908\|Ga0310900_11162867	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	641	Open in IMG/M
3300031938\|Ga0308175_100000920	All Organisms → cellular organisms → Bacteria	19517	Open in IMG/M
3300031995\|Ga0307409_100954897	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	873	Open in IMG/M
3300033551\|Ga0247830_11134753	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	624	Open in IMG/M
3300034818\|Ga0373950_0152091	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.81%
Host-Associated	Host-Associated	45.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.92%
Plants	Host-Associated → Plants	44.23%
Aquatic	Environmental → Aquatic	2.88%
Human	Host-Associated → Human	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.15%
Marine	Environmental → Aquatic → Marine	2.88%
Digestive System	Host-Associated → Human → Digestive System	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.46%
Loam	Environmental → Terrestrial → Soil → Loam	10.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	9.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.69%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.46%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	9.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.58%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.58%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.69%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.77%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.92%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.96%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005893	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_202	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014301	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_03222220	2088090015	Soil	MTRGIVVTGIVTLALVTGCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAXXWWKQHGYREVTVYHDGTRYYSREVATTGLRAVIVYQREGKYYMPDEDGERSHSQHGHGRDRED
ICChiseqgaiiFebDRAFT_114876832	3300000363	Soil	MMRRTVVGGILTLAFATGCSSSRSQDRVVVVPPPRAVRHEAGRDVIVVERTHIPRGHAYGWWKKHGYREVTVYYDGARYYSRRLESPGFRAVVVYQRDGKYYMADADGDD
soilL1_101133512	3300003267	Sugarcane Root And Bulk Soil	MTRGIVVTGIVTLALVTGCGSSRSQDRVVVSPPPRAMRREPAREVIVVERTHVPRGRAHGWWKQHGYREVTLYHDGTSYYSRQHEPTGFRAVVVFQREGKYYLPVEDDGKEKGKGHDQKKDHGRDRDEDE*
soilH1_103197283	3300003321	Sugarcane Root And Bulk Soil	LVTGCGSSRSQDRVVVSPPPRAMRREPAREVIVVERTHVPRGRAHGWWKQHGYREVTVYHDGTRYYSREGAPTGLRAVIVYQREGKYYLPDEEGERGHSRHGHGGDRQD*
soilH1_103298912	3300003321	Sugarcane Root And Bulk Soil	MTRGIVVTGIVALALVTGCGSSRTQERVVVTPPPRALREAIVVERTHVPKGHAYGWWKQHGYREITVYYDGSSYYSRRLEPTGFRAVIVYQRDGKYYLPADDDAQENRHGHHHDRDDD*
soilH2_100487363	3300003324	Sugarcane Root And Bulk Soil	MTRGIVVTGIVALALVTGCGSSRTQERVVVTPPPRALREAIVVERTHVPKGHAYGWWKQHGYREVTVYSDGTRYYSGESAPKGFRAVTVYQREGKYYLPDEDGERGHSQHGHGRGRED*
Ga0055471_100980991	3300003987	Natural And Restored Wetlands	MTRGIVVTGIVTLALVTGCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAHGWWKQHGYREVTVYHDGTRYYSREVAPTGFRAVIVYQREGKYYM
Ga0055469_100854131	3300003999	Natural And Restored Wetlands	MTRGIVVTGIVTLALVTGCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAYGWWKQHGYREVTVYHDGTRYYSREVAPTGFRAVIVYQREGKYYLPDEDGERSHSQHGHGRDRED*
Ga0062589_1006899772	3300004156	Soil	MKRGIVAGGILALAFGAGCSPRTQDRVVVAPRTRVVERREPAREVIVVERTHVPRGHAYGWWKQHGYREITLYYDGTSYYSRQLEPTGFRAVIVYQRDGRYYLPAEDAEEGRHGHHHDRDDDD*
Ga0062595_1002293541	3300004479	Soil	MTRGIVVTGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWKQHGYSEVTVYYDGTRYYSRELAATKLQAVIVYQKEGKYYLPDEDGERGHSRHGHGGDRQD*
Ga0062595_1021969991	3300004479	Soil	MKRKIVVGGIMALAFGAGCGGGASQERVVVVSPPPVVVHRGPVREVIVVERTHVPKGKAHGWWKKHGYREVTVYYDGTRYYSRRLEPTGFRAVVVYQREGKYYIADEDAERHRSHHEDDHGEND*
Ga0058861_100892711	3300004800	Host-Associated	MTRGIMATGIVTLALVTGCGSSRSQDRVVVTPPPRTVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSRQVAPTGFRAVIVYQREGKYYLS
Ga0070683_1009855721	3300005329	Corn Rhizosphere	MTRGIVVTGIVTLALVTGCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAHGWWKQHGYREVTVYHDGTRYYSREVATTGLRAVIVYQREGKYYMPDEDGERSHSQHGHGRDRED*
Ga0070683_1017606792	3300005329	Corn Rhizosphere	MTRGIVATGIVTLALVTGCGSSGSQDRVVVTPPPRAMRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLPDEDGE
Ga0070670_1008005093	3300005331	Switchgrass Rhizosphere	LAFGAGCSPRTQDRVVVAPRTRVVERREPAREVIVVERTHVPRGHAYGWWKQHGYREITLYYDGTSYYSRQLEPTGFRAVIVYQRDGRYYLPAEDAEEGRHGHHHDRDDDD*
Ga0070659_1000744083	3300005366	Corn Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRTVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSRQVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRDRED*
Ga0070705_1015635042	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MRRIVMGGILTLTFGTGCGSSRSQDRAVVTPPPRVERRGPVREVIVVERTHVPKGHAYGWWKQHGYREVTVYYDGTRYYSSRHDPAGLRAVIVYQRDGKYYQPDTDGERG
Ga0070663_1014219781	3300005455	Corn Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQRDGKYYLPDEDGERSHSHQGHGRDRED*
Ga0070681_105023202	3300005458	Corn Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPKGHAHGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRDRED*
Ga0070684_1003217303	3300005535	Corn Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWKQHGYSEVTVYYDGTRYYSRELAATKLQAVIVYQKEGKYYLPDEDGERGHSRHGHGGDRQD*
Ga0070684_1015941431	3300005535	Corn Rhizosphere	NELAAGTPLAHGSLACQPREEDVTRGIVATGIVTLALVTGCGSSKNQEVVVTPPPRAERREHARQVIMVERTHVPKGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLPDEDGERSHSHQGHGRDRED*
Ga0068853_1019535661	3300005539	Corn Rhizosphere	QPRGEDMTRGIVATGIVTLGLVTGCGSSRSQDRVVVTPPPRTVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRDRED*
Ga0070664_1003868562	3300005564	Corn Rhizosphere	TGIVTLALVTGCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAHGWWKQHGYREVTVYHDGTRYYSREVATTGLRAVIVYQREGKYYMPDEDGERSHSQHGHGRDRED*
Ga0068857_1012956661	3300005577	Corn Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSRQVAPTGFRAVIVYQREGKYYLPDEDGEQSHSHHGHGRDRED*
Ga0068852_1021760861	3300005616	Corn Rhizosphere	MTRGIVVTGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWKQHGYSEVTVYYDGTRYYSRQVAPTGFRAVIVYQREGKYYLSDE
Ga0068859_1017288361	3300005617	Switchgrass Rhizosphere	MTRGIVVTGIVTLALVTGCGSSRSQDRVVVTPPPRTVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSRQVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRDRED*
Ga0068864_1003606072	3300005618	Switchgrass Rhizosphere	MMRRIVVGGILTLAFATGCSSSRSQDRVVVVPPPRGVRYEAGRDVIVVERTHVPRGHAYGWWKKHGYREVTVYYDGARYYSRRLESPGFRAVVVYQRDGKYYMADADGDDRDRHGHGNDEGKDD*
Ga0068861_1009305971	3300005719	Switchgrass Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPKGHAHGWWKQHGYREVTVYYDGTRYYSRELAATKLQAVIVYQKEGKYYLPDEDGERGHSRHGHGGD
Ga0075278_10585392	3300005893	Rice Paddy Soil	MKRGIVAAGILALAFGTGCSTRTQERVVVTPPPRVVARRGPAREVIVVERTHVPRGHAYGWWKQHGYREVTLYYDGSSYYRQRPEPTGFRAVTVYQREGRYYVPAEDE
Ga0081455_106946751	3300005937	Tabebuia Heterophylla Rhizosphere	MKRGIVAAGILALAFGTGCSSRSQERVVVTPPPRVVERRAPARDVIVVERTHVPRGHAYGWWKQHGYREVTLYYDGTSYYSRRIESGFRAVIVYQREGRYYLPAEDDVQEKGHGHHHDRDDDN*
Ga0070715_102474311	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVIAVERTHVPRGHAYGWWKQHGYREVTVYYDGTSYYSRRLEPTGFSAVIVYQRDGRYYLPAEEDVQEKGHGHHGHGAEND*
Ga0070712_1010480751	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVVVVERTHVPRGHAYGWWKQHGYREVTVYYDGTSYYSRRLEPTGFSAVIVYQRDGRYYLPAEEDVQE
Ga0079222_102542022	3300006755	Agricultural Soil	MKRAIVTGGILVLAFGTGCSPRAQDRVVVAPRPRVVERRGPAREVIVVERTHVPRGHAYGWWKQHGYREVTLYYDGTSYYSERLEATGFRVVIVYQRDGRYYLPDEDTEKGGHGRHHDRDDND*
Ga0079220_102415221	3300006806	Agricultural Soil	MKRRIVAGGILALAFGTGCSSRTQERVVVTPPPRVVERRGPAREVIVVERTHVPRGHAYGWWKQHGYREVTLYYDGTSYYSRRLEPTGFRAVIVYQREGKYYLPAEDDVREKGHGHHHDRDDDN*
Ga0075428_1014632821	3300006844	Populus Rhizosphere	MRRIVMGGILTLAFGTGCSSRSQERVVVTPPPRVVRHEPVREVIVVERTRVPRGHAYGWWKKHGYREVTLYFDGTQYYSRRYDPTGLRAVIVYQRDGKYYLPDADGERGRSRHGDDQGEDN*
Ga0075421_1007513432	3300006845	Populus Rhizosphere	MMRRIVMGGILTLAFGTGCSSRSQERVVVTPPPRVVRHEPVREVIVVERTRVPRGHAYGWWKKHGYREVTLYFDGTQYYSRRYDPTGLRAVIVYQRDGKYYLPDADGERGRSRHGDDQGEDN*
Ga0075433_105450152	3300006852	Populus Rhizosphere	MTRGIVATGIVTLALVTGCGSSGSHDRVVVTPPPRAMRHQPAREVIVVERTHVPKGHAYGWWKQHGYREVTVYYDGTRYYSGEVAPTGFRAVIVYQREGK
Ga0075425_1016208062	3300006854	Populus Rhizosphere	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTSYYSRRLEPTGFSAVIVYQRDGRYYLPAEEDVQEKGHGHHGHGDDND*
Ga0075434_1024437541	3300006871	Populus Rhizosphere	ATGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWKQHGYSEVTVYYDGTRYYGRELAATKLQAVIVYQKEGKYYLPDEDGERGHSRHGHGGDRQD*
Ga0075424_1026637151	3300006904	Populus Rhizosphere	RLIRIRQGLSRWHTPRTWPSELQLLRADMKRKIVVGGIMALAFGAGCGGGASQERVVVVSPPPVVVHRGPVREVIVVERTHVPKGKAHGWWKKHGYREVTVYYDGTRYYSRRLEPTGFRAVVVYQREGKYYIADEDAERHRSHHEDDQGEND*
Ga0075435_1013727251	3300007076	Populus Rhizosphere	MKRKIVVGGIMALAFGAGCGGGASQERVVVVSPPPVVGHRGPVREVIVVERTHVPKGKALGWWKKHGYREVTVYYDGTRYYSRRLEPTGFRAVVVYQREGKYYIADEDAERHRSHHEDDQGEND*
Ga0114129_121250911	3300009147	Populus Rhizosphere	MKRKIVVGGIMALAFGAGCGGGASQERVVVVSPPPVVVHRGPVREVIVVERTHVPKGKALGWWKKHGYREVTVYYDGTRYYSRRLEPTGFRAVVVYQREGKYYIADEDAERHRSHHEDDQGEND*
Ga0114129_129063821	3300009147	Populus Rhizosphere	ATGIVTLALVTGCGSSGSHDRVVVTPPPRAMRHQPAREVIVVERTHVPKGHAYGWWKQHGYREVTVYYDGTRYYSGEVAPTGFRAVIVYQREGKYYLPDEDGERSHSHQGHGRDRED*
Ga0075423_106970081	3300009162	Populus Rhizosphere	MKRKIVVGGIMALAFGAGCGGGASQERVVVVSPPPVVVHRGPMREVIVVERTHVPKGKAHGWWKKHGYREVTVYYDGTRYYSRRLEPTGFRAVVVYQREGKYYIADEDAERHRSHHEDDQGEND*
Ga0126308_104030682	3300010040	Serpentine Soil	MLTLAFSTGCSSSRSPDRVVVVPQPRAVRHEAGRDVIVVERTHVPKGNAYGWWKKHGYREVTVYHDGARYYSRRLDSTGFRAVVVYQRDGKYYMADGDGDDRDVHGHGHGHDKGKAD*
Ga0126311_102362972	3300010045	Serpentine Soil	MLTLAFATGCSSSRSPDRVVVVPQPRAVRHEAGRDVIVVERTHVPKGNAYGWWKKHGYREVTVYSDGSRYYGRRLESPGVRAVVVYQRDGKYYMADADGDDRDQHGHGHGHDKGKGD*
Ga0126306_113953411	3300010166	Serpentine Soil	MMVGGLLTLALATGCSSSRTQDRVVVTPRAVRHDAGRDVIVVERTHVPKGQAHGWWKKHGYREVTVYHDGARYYSRRVDSAGFRAVVVYQRDGKYFMADADGDDR
Ga0134125_115036452	3300010371	Terrestrial Soil	MKRAIVTGGILVLAFGTGCSPRAQDRVVLATRPRVVERRGPAREVIVVERTHVPRGHAYGWWKQHGYREVTLYYDGTSYYSERLEATGFRAVIVYQRDGRYYLPDEDTEKGGHGRHHDRDDND*
Ga0134127_119190081	3300010399	Terrestrial Soil	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRTVRREPAREVIVVERTHVPKGHAHGWWKQHGYREVTLYYDGTRYYSRQVAPTGFRAVIVFQREGKYYLSDEDGERSHSHHGHGRDRED*
Ga0134121_128183371	3300010401	Terrestrial Soil	MTRGIVVTGIVTLALVTGCGSSKNQEVVVTPPPRAERREHARQVIMVERTHVPKGHAYGWWKQHGYREVTVYYDGTRYYSGEVATKGFQAVIVYQREGKYYLPDEDGEQSQSHHGHGRDKKD*
Ga0150985_1148764541	3300012212	Avena Fatua Rhizosphere	MTRGIVVTGIVTLALVTGCGSSRSQEQVVVMPPPRAMQREAIVVERTHVPKGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVLVYQREGKYYLHDEEGDGSHSHHGHGRDGED*
Ga0150985_1205178931	3300012212	Avena Fatua Rhizosphere	DMMRRMMVGGLLTLAFATGCSSSGSQDRVVVVPPPRAVRHDAGRDVIVVERTHVPRGQAHGWWKKHGYREVTVYYDGAHYYSRRLESPAFRAVVVYQREGQYYMADADGDDRDRHGHGRDKGKDD*
Ga0157293_101527131	3300012898	Soil	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPKGHAHGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLPDEDGERSQSHHGHGRDRED*
Ga0157308_102530981	3300012910	Soil	MTRGIVATGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWKQHGYSEVTVYYDGTRYYSREVAPTGVRAVIVYQREGKYYLPDEDGERSHSHRGHGGDRED*
Ga0157297_104745401	3300012914	Soil	MTRGIVATGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWKQHGYSEVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLPDEDGERSHSHRGHGGDRED*
Ga0157302_100425692	3300012915	Soil	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGVRAVIVYQREGKYYLPDEDGERSHSHRGHGGDRED*
Ga0164303_104880231	3300012957	Soil	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVVVVERTHVPRGHAYGWWKQHGYREVTVYYDGTSYYSRRLEPTGFSAVIVYQRDGRYYLPAEEDVQEKGHGHHGHGAEND*
Ga0164304_102478511	3300012986	Soil	PSHARPPDHHLPEADMMRRIVVGGILTLAFATGCSSSRSQDRVVVVPPPRGVRYEAGRDVIVVERTHVPRGHAYGWWKKHGYREVTVYYDGARYYSRRLESPGFRAVVVYQRDGKYYMADADGDDRDRHGHGNDEGKDD*
Ga0164304_106803962	3300012986	Soil	MKRGIMAAGLLALAFGTGCSTRTQERVVVTPPPQVVQRQAPSREVIVVERAHVPRGHAYGWWKQHGYREVTLYYDGTSYYSRRLEPTGFRAVIVYQREGRYYLPAEDDGQENGHGHHHDHDDDN*
Ga0164307_107447002	3300012987	Soil	MTRGIVVTGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWKQHGYSEVTVYYDGTRYYGRELAATKLQAVIVYQKEGKYYLPDEDGER
Ga0164305_114462501	3300012989	Soil	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVVVVERTHVPRGHAYGWWKQHGYREVTVYYDGTSYYSRRLEPAGFSAVIVYQRDGRYYLPAEEDVQEKGHGHHGHGAEND*
Ga0075323_10991901	3300014301	Natural And Restored Wetlands	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAHGWWKQHGYREVTVYHDGTRYYSREVATTGLRAVIVYQREGKYYMPDEDGERSHSQHGHGRDRED*
Ga0157379_111509091	3300014968	Switchgrass Rhizosphere	MTRGIVVTGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWKQHGYREVTVYYDGTRYYSGEVATKGFQAVIVYQREGKYYLPDEDGEQSQSHHGHGQDKKE*
Ga0173483_100153822	3300015077	Soil	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRTVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRDRED*
Ga0132258_101255183	3300015371	Arabidopsis Rhizosphere	MTRGIVATGILTLALVTGCGSGRSQERVVVTPPPKAVRREPARQVIVVERTHVPKGHAYGWWKKHGYREVTVYSNGTQYYSGEVAPAGFRAVIVYQREGKYYLPDEDGEQSQSHHGHGRDKKD*
Ga0132258_105636601	3300015371	Arabidopsis Rhizosphere	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVVVVERTHVPRGHAYGWWKQHGYREVTVYYDGTSYYSRRLEPTGFSAVIVYQRDGRYYLPAEEDVQENRHGHHGHGDDND*
Ga0132258_135154132	3300015371	Arabidopsis Rhizosphere	MMRRIVMGGILTLAFGTGCASRSQERVVVTPPPRVVRREPVREVIVVERTHVPKGHAYGWWKKHGYREVTLYFDGTQYYSRRYDPTGLRAVIVYQRDGKYYLPDADGERGRSRHGDDQGEDN*
Ga0132258_135806072	3300015371	Arabidopsis Rhizosphere	MKRGIVAGGILALAFGSGCSSRTQERVVVTPSPRVVERRGPEREVIVVERAHVPRGHAYGWWKQHGYREVTLYYDGTSYYSRQLEPTGFRAVIVYQREGRYYLPAEDDV
Ga0132256_1000817542	3300015372	Arabidopsis Rhizosphere	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVVVVERTHVPRGHAYGWWKQHGYREVTVYYDGTSYYSRRLEATGFSAVIVYQRDGRYYLPAEEDVQEKGHGHHGHGADND*
Ga0132256_1019168661	3300015372	Arabidopsis Rhizosphere	MMRRIVVGGILTLAFAMGCSSSRSQDRVVVVPPPRGVRYEAGRDVIVVERTHVPRGHAYGWWKKHGYREVTVYYDGARYYSRRLESPGFRAVVVYQRDGKYYMADADGDDRDRHGHGNDEGKDD*
Ga0132257_1001530543	3300015373	Arabidopsis Rhizosphere	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVVVVQRTHVPKGHAYGWWKQHGYREVTLYYDGTSYYSRRLEPTGFSAVIVYQRDGRYYLPAEEDVQEKGHGHHGHGADND*
Ga0132257_1001760294	3300015373	Arabidopsis Rhizosphere	MTRGIVVTGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWRQHGYSEVTVYYDGTRYYSRELAATKLQAVIVYQKEGKYYLPDEDGERGHSRHGHG
Ga0132255_1004508453	3300015374	Arabidopsis Rhizosphere	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVVVVERTHVPRGHAYGWWKQHGYREVTVYYDGTSYYSRRLEPTGFSAVIVYQRDGRYYLPAEEDVQEKGHGHHGHGADND*
Ga0132255_1059310411	3300015374	Arabidopsis Rhizosphere	MMRRIVVGGILTLAFATGCSSSRSQDRVVVVPPPRGVRYEAGRDVIVVERTHVPRGHAYGWWKKHGYREVTVYYDGARYYSRRLESPGFRAVVVYQRDGKYYM
Ga0210061_10263622	3300025537	Natural And Restored Wetlands	MTRGIVVTGIVTLALVTGCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAHGWWKQHGYREVTVYHDGTRYYSREVATTGLRAVIVYQREGKYYMPDEDGERSHSQHGHGRDRED
Ga0207643_108320951	3300025908	Miscanthus Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRDRED
Ga0207707_101883363	3300025912	Corn Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPRGHAHGWWKQHGYREVTVYYDGTRYYSRQVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRDRED
Ga0207693_114665311	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKRGIVAGGMLALAFGTGCGSRTHDSAVVVPPPRVERRAPVREVVVVERTHVPRGHAYGWWKQHGYREVTVYYDGTSYYSRRLEPTGFSAVIVYQRDGRYYLPAEEDV
Ga0207660_102456862	3300025917	Corn Rhizosphere	MTLRLVITLALVTGCGSSRSQDRVVVTPPPRTVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRGRED
Ga0207689_115920311	3300025942	Miscanthus Rhizosphere	RMVPPVCQPREEDMTRGIVATGIVTLALVTGCGSSGSHDRVVVTPPPRAMRHQPAREVIVVERTHVPRGHAYGWWKQHGYREITLYYDGTSYYSRQLEPTGFRAVIVYQRDGRYYLPAEDAEEGRHGHHHDRDDDD
Ga0207678_111165711	3300026067	Corn Rhizosphere	MTRGIVVTGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQRDGKYYLPDEDGERSHSHQGHGRDRED
Ga0207641_122522261	3300026088	Switchgrass Rhizosphere	MTRGIVATGIVTLALVTGCGSSGSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGHAYGWWKQHGYREVTVYYDGTRYYSRELAATKLQAVIVYQKEGKYYLPDEDGERGHSRHGHGGDRQD
Ga0207676_126235371	3300026095	Switchgrass Rhizosphere	MRRIVVGGILTLAFATGCSSSRSQDRVVVVPPPRGVRYEAGRDVIVVERTHVPRGHAYGWWKKHGYREVTVYYDGARYYSRRLESPGFRAVVVYQRDGKYYMADADGDDRDRHGHGNDEGKDD
Ga0207674_108123261	3300026116	Corn Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSRQVAPTGFRAVIVYQREGKYYLPDEDGERSHSHQGHGRDRED
Ga0207675_1016883751	3300026118	Switchgrass Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPKGHAHGWWKQHGYREVTVYYDGTRYYSRELAATKLQAVIVYQKEGKYYLPDEDGERGHSRHGHGGDRQD
Ga0209971_10848111	3300027682	Arabidopsis Thaliana Rhizosphere	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRAVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGVRAVIVYQREGKYYLPDEDGERSQSHHGHGRDRGLTESRSLLS
Ga0209382_113906861	3300027909	Populus Rhizosphere	MRRIVMGGILTLAFGTGCSSRSQERVVVTPPPRVVRHEPVREVIVVERTRVPRGHAYGWWKKHGYREVTLYFDGTQYYSRRYDPTGLRAVIVYQRDGKYYLPDADGERGRSRHGDDQGED
Ga0247821_112202571	3300028596	Soil	MRRMMVGGILTLALATGCSSGRTQDRVVVTPRVVRHDAGRDVIVVERTHVPRGQAHGWWKKHGYREITVYYDGARYYSRRLESTGFRAVVVYQREGKYY
Ga0247820_109347751	3300028597	Soil	MRRMMVGGILTLALATGCSSGRTQDRVVVTPRVVRHDAGRDVIVVERTHVPRGQAHGWWKKHGYREITVYYDGARYYSRRLESTGFRAVVVYQREGKYYMADGDGDDRERHGHGHDKGKG
Ga0247824_104860312	3300028809	Soil	MTRGIVVTGIVTLALVTGCGSSRSQDPVVVTPPPRAMRREPAREVIVVERTHVPKGRAHGWWKQHGYREVTVYHDGTRYYSREVATTGLRAVIVYQREGKYYMPDEDGERSHSQHGHGRDRED
Ga0247825_100044158	3300028812	Soil	MTRGIVATGIVTLALVTGCGSSRSQDRVVVTPPPRTVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSRQVAPTGFRAVIVYQREGKYYLSDEDGERSHSHHGHGRDRED
Ga0247827_106420411	3300028889	Soil	PTREEHMTRGIVVTGIVTLALVTGCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAHGWWKQHGYREVTVYHDGTRYYSREVATTGLRAVIVYQREGKYYMPDEDGERSHSQHGHGRDRED
Ga0310887_104630411	3300031547	Soil	MTRGIVATGIVTLALVTGCGSSGSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGHAYGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVYQREGKYYLPDEDGERSHSHQGHGRDRED
Ga0310813_100247193	3300031716	Soil	MMRRIVVGGILTLAFATGCSSSRSQDRVVVVPPPRGVRYEAGRDVIVVERTHVPRGHAYGWWKKHGYREVTVYYDGARYYSRRLESPGFRAVVVYQRDGKYYMADADGDDRDRHGHGNDEGKDD
Ga0310813_101732213	3300031716	Soil	MTRGIVVTGIVTLALVTGCGSSRSQEQVVVTPPPHAVRREPAREVLVVERTHVPKGHAYGWWKQHGYSEVTVYYDGTRYYSRELAATKLQAVIVYQKEGKYYLPDEDGERGHSRHGHGGDRQD
Ga0310813_115247641	3300031716	Soil	MKRGILAGGILALAFGTGCSSRTQERLVVTPPPRASERRGPAREVVVVERTHVPRGHAYGWWKQHGYREVTLYYDGTSYYSRRLEPTGFRAVIVYQREGKYYLPAEDDVREKGHGHHHDRDDDN
Ga0307410_108401801	3300031852	Rhizosphere	MMRRIVVGGMLTLAFSTGCSSSRSPDRVVVVPQPRAVRHEAGRDVIVVERTHVPKGNAYGWWKKHGYREVTVYSDGSRYYGRRLESPGVRAVVVYQRDGKYYMADADGDDRDQHGHGHGHDKGKGY
Ga0310904_110955811	3300031854	Soil	MTRGIVATGIVTLGLVTGCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAHGWWKQHGYREVTVYHDGTRYYSREVATTGLRAVIVYQREGKYYMPDEDGERSHSQHGHGRDRED
Ga0310892_110558141	3300031858	Soil	MTRGIVVTGIVTLALVTGCGSSRSQDRVVVTPPPRTVRREPAREVIVVERTHVPRGHAYGWWKQHGYREVTVYYDGTRYYSGEVATKGFQAVIVYQREGKYYLPDEDGERGHSRHGHGGDRQD
Ga0310900_111628671	3300031908	Soil	GCGSSRSQDRVVVTPPPRAMRREPAREVIVVERTHVPKGRAHGWWKQHGYREVTVYYDGTRYYSREVAPTGFRAVIVFQREGKYYLPDEDGERSHSQHGHGRDRED
Ga0308175_10000092012	3300031938	Soil	MKRGIVAAGILALAFGTGCSTRTQDRVVVAPPPRVAERRGPKREVIVVERTHVPRGHAYGWWKQHGYREVTLYYDGTSYYSRQLEPTGFRAVIVYQREGRYYLPAEDDVREKGHGHHHDGDDDR
Ga0307409_1009548971	3300031995	Rhizosphere	MRRIVVGGMLTLAFSTGCSSSRSPDRVVVVPQPRAVRHEAGRDVIVVERTHVPKGNAYGWWKKHGYREVTVYSDGSRYYGRRLESPGVRAVVVYQRDGKYYMADAD
Ga0247830_111347531	3300033551	Soil	MMRRMMVGGILTLALATGCSSGRTQDRVVVTPRVVRHDAGRDVIVVERTHVPRGQAHGWWKKHGYREITVYYDGARYYSRRRESAGFRAIVVYQRDGKYYMADGDGDDRDRHGHGHDKGKGD
Ga0373950_0152091_224_529	3300034818	Rhizosphere Soil	MMRRIVVGGILTLAFATGCSSSRSQDRVVVVPPPRGVRYEAGRDVIVVERTHVPRGHAYGWWKKHGYREVTVYYDGARYYSRRLESPGFRAVVVYQRDGKYY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098136

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences