Metagenome / Metatranscriptome Family F098131

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098131
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	64 residues
Representative Sequence	MSDDAKKDMVSRRGFLGVGSAALAAAGMLSAADAAGQEQKPYPTKNDRSASAPGPGN
Number of Associated Samples	97
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.26 %
% of genes near scaffold ends (potentially truncated)	94.23 %
% of genes from short scaffolds (< 2000 bps)	85.58 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.077 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.615 % of family members)
Environment Ontology (ENVO)	Unclassified (21.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.154 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 36.47% β-sheet: 0.00% Coil/Unstructured: 63.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00970	FAD_binding_6	7.69
PF00348	polyprenyl_synt	3.85
PF03725	RNase_PH_C	3.85
PF00753	Lactamase_B	2.88
PF01343	Peptidase_S49	1.92
PF10415	FumaraseC_C	1.92
PF05199	GMC_oxred_C	1.92
PF16859	TetR_C_11	1.92
PF00920	ILVD_EDD	1.92
PF12146	Hydrolase_4	0.96
PF00710	Asparaginase	0.96
PF13377	Peripla_BP_3	0.96
PF00248	Aldo_ket_red	0.96
PF01638	HxlR	0.96
PF01653	DNA_ligase_aden	0.96
PF13424	TPR_12	0.96
PF00512	HisKA	0.96
PF07883	Cupin_2	0.96
PF13231	PMT_2	0.96
PF02641	DUF190	0.96
PF13193	AMP-binding_C	0.96
PF14310	Fn3-like	0.96
PF02954	HTH_8	0.96
PF07238	PilZ	0.96
PF13594	Obsolete Pfam Family	0.96
PF03459	TOBE	0.96
PF15937	PrlF_antitoxin	0.96
PF02652	Lactate_perm	0.96
PF03050	DDE_Tnp_IS66	0.96
PF02077	SURF4	0.96
PF01596	Methyltransf_3	0.96
PF01979	Amidohydro_1	0.96
PF05239	PRC	0.96
PF13561	adh_short_C2	0.96
PF01063	Aminotran_4	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	3.85
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	3.85
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	3.85
COG0689	Ribonuclease PH	Translation, ribosomal structure and biogenesis [J]	3.85
COG1185	Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	Translation, ribosomal structure and biogenesis [J]	3.85
COG2123	Exosome complex RNA-binding protein Rrp42, RNase PH superfamily	Intracellular trafficking, secretion, and vesicular transport [U]	3.85
COG0252	L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	Translation, ribosomal structure and biogenesis [J]	1.92
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	1.92
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	1.92
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.96
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.96
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.96
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.96
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.96
COG1620	L-lactate permease	Energy production and conversion [C]	0.96
COG0272	NAD-dependent DNA ligase	Replication, recombination and repair [L]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.08 %
Unclassified	root	N/A	26.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.08 %
Unclassified	root	N/A	26.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.08 %
Unclassified	root	N/A	26.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	32.69 %
Unclassified	root	N/A	26.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.92 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.92 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.92 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.92 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.92 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.96 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.81 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.92 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.96 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.96 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.81 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	1.92 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.92 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.96 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.96 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.96 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.96 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.81 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.92 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	1.92 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.96 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.96 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.96 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.96 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.81 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.92 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.92 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.96 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	0.96 %
Mesorhizobium sp. URHC0008	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. URHC0008	0.96 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.96 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16822197	All Organisms → cellular organisms → Bacteria	5541	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101679217	All Organisms → cellular organisms → Bacteria	2482	Open in IMG/M
3300000789\|JGI1027J11758_12969329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1136	Open in IMG/M
3300001593\|JGI12635J15846_10695274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	586	Open in IMG/M
3300004091\|Ga0062387_100167199	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1288	Open in IMG/M
3300004091\|Ga0062387_101141526	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300004091\|Ga0062387_101603820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. URHC0008	525	Open in IMG/M
3300004635\|Ga0062388_100739168	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	924	Open in IMG/M
3300005178\|Ga0066688_10650518	Not Available	675	Open in IMG/M
3300005434\|Ga0070709_10772949	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	752	Open in IMG/M
3300005436\|Ga0070713_100056812	Not Available	3256	Open in IMG/M
3300005518\|Ga0070699_100846021	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300005541\|Ga0070733_10970473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300005542\|Ga0070732_10062706	All Organisms → cellular organisms → Bacteria	2160	Open in IMG/M
3300005764\|Ga0066903_108699370	Not Available	516	Open in IMG/M
3300005921\|Ga0070766_10926003	Not Available	597	Open in IMG/M
3300005921\|Ga0070766_11190875	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300006162\|Ga0075030_100313346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1254	Open in IMG/M
3300006163\|Ga0070715_10300663	All Organisms → cellular organisms → Bacteria → Acidobacteria	858	Open in IMG/M
3300009500\|Ga0116229_11137499	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	624	Open in IMG/M
3300009623\|Ga0116133_1037247	Not Available	1203	Open in IMG/M
3300009623\|Ga0116133_1160510	Not Available	592	Open in IMG/M
3300009628\|Ga0116125_1147943	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300009635\|Ga0116117_1038949	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300009665\|Ga0116135_1004042	All Organisms → cellular organisms → Bacteria	6075	Open in IMG/M
3300009665\|Ga0116135_1251295	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300009759\|Ga0116101_1179184	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300010048\|Ga0126373_12176812	Not Available	616	Open in IMG/M
3300010360\|Ga0126372_13194156	Not Available	509	Open in IMG/M
3300010376\|Ga0126381_100162685	All Organisms → cellular organisms → Bacteria	2945	Open in IMG/M
3300010937\|Ga0137776_1749486	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	519	Open in IMG/M
3300011120\|Ga0150983_12118692	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300011271\|Ga0137393_10874614	Not Available	767	Open in IMG/M
3300012357\|Ga0137384_10809458	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300012918\|Ga0137396_10111107	All Organisms → cellular organisms → Bacteria	1967	Open in IMG/M
3300012923\|Ga0137359_11072129	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300012925\|Ga0137419_11594140	Not Available	555	Open in IMG/M
3300012927\|Ga0137416_11299178	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300012971\|Ga0126369_12323701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	623	Open in IMG/M
3300014489\|Ga0182018_10565500	Not Available	598	Open in IMG/M
3300014493\|Ga0182016_10704928	Not Available	566	Open in IMG/M
3300014495\|Ga0182015_10001945	All Organisms → cellular organisms → Bacteria	26139	Open in IMG/M
3300015242\|Ga0137412_10394360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1072	Open in IMG/M
3300015372\|Ga0132256_102575108	Not Available	609	Open in IMG/M
3300015374\|Ga0132255_100552585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1697	Open in IMG/M
3300017924\|Ga0187820_1147810	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300017955\|Ga0187817_10036126	All Organisms → cellular organisms → Bacteria	3011	Open in IMG/M
3300017966\|Ga0187776_11623910	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300017995\|Ga0187816_10194635	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	881	Open in IMG/M
3300018006\|Ga0187804_10157280	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300018022\|Ga0187864_10194287	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300018025\|Ga0187885_10341351	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	675	Open in IMG/M
3300018035\|Ga0187875_10224527	All Organisms → cellular organisms → Bacteria → Acidobacteria	1031	Open in IMG/M
3300018042\|Ga0187871_10540607	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300018047\|Ga0187859_10008678	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5932	Open in IMG/M
3300018085\|Ga0187772_10403505	All Organisms → cellular organisms → Bacteria → Acidobacteria	952	Open in IMG/M
3300020581\|Ga0210399_10649393	All Organisms → cellular organisms → Bacteria → Proteobacteria	870	Open in IMG/M
3300021170\|Ga0210400_11536479	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300021406\|Ga0210386_10650741	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300021407\|Ga0210383_10442745	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300021407\|Ga0210383_11565785	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300021420\|Ga0210394_10996535	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300021433\|Ga0210391_11220055	Not Available	582	Open in IMG/M
3300021474\|Ga0210390_11348071	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300021475\|Ga0210392_11457038	Not Available	512	Open in IMG/M
3300022840\|Ga0224549_1025236	All Organisms → cellular organisms → Bacteria → Acidobacteria	812	Open in IMG/M
3300023030\|Ga0224561_1012970	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300024123\|Ga0228600_1014107	Not Available	639	Open in IMG/M
3300025463\|Ga0208193_1064984	Not Available	762	Open in IMG/M
3300025905\|Ga0207685_10668717	Not Available	563	Open in IMG/M
3300025929\|Ga0207664_10247337	All Organisms → cellular organisms → Bacteria → Acidobacteria	1555	Open in IMG/M
3300025939\|Ga0207665_10055065	All Organisms → cellular organisms → Bacteria → Acidobacteria	2683	Open in IMG/M
3300026334\|Ga0209377_1240833	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300026557\|Ga0179587_10656886	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300027089\|Ga0207943_109394	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300027562\|Ga0209735_1064615	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300027567\|Ga0209115_1034542	All Organisms → cellular organisms → Bacteria → Acidobacteria	1146	Open in IMG/M
3300027648\|Ga0209420_1073302	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300027671\|Ga0209588_1241700	Not Available	553	Open in IMG/M
3300027676\|Ga0209333_1005647	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4266	Open in IMG/M
3300027795\|Ga0209139_10260965	All Organisms → cellular organisms → Bacteria → Acidobacteria	611	Open in IMG/M
3300027853\|Ga0209274_10561472	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300027911\|Ga0209698_10215244	All Organisms → cellular organisms → Bacteria	1548	Open in IMG/M
3300027911\|Ga0209698_10911433	Not Available	659	Open in IMG/M
3300028748\|Ga0302156_10495157	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300028906\|Ga0308309_10197943	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300029939\|Ga0311328_10688991	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300029943\|Ga0311340_10059350	All Organisms → cellular organisms → Bacteria	4454	Open in IMG/M
3300029944\|Ga0311352_11354573	Not Available	536	Open in IMG/M
3300029982\|Ga0302277_1313276	Not Available	570	Open in IMG/M
3300030053\|Ga0302177_10584409	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	572	Open in IMG/M
3300031090\|Ga0265760_10157480	Not Available	748	Open in IMG/M
3300031231\|Ga0170824_111106697	Not Available	553	Open in IMG/M
3300031715\|Ga0307476_10129948	All Organisms → cellular organisms → Bacteria	1799	Open in IMG/M
3300031753\|Ga0307477_11121593	Not Available	513	Open in IMG/M
3300031823\|Ga0307478_11754688	Not Available	511	Open in IMG/M
3300031941\|Ga0310912_10766501	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300032770\|Ga0335085_10226799	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	2265	Open in IMG/M
3300032828\|Ga0335080_11332101	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300032893\|Ga0335069_10171457	All Organisms → cellular organisms → Bacteria	2670	Open in IMG/M
3300032898\|Ga0335072_10487981	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300033158\|Ga0335077_11130480	Not Available	772	Open in IMG/M
3300033887\|Ga0334790_121044	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	821	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.15%
Host-Associated	Host-Associated	3.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.15%
Aquatic	Environmental → Aquatic	25.00%
Plants	Host-Associated → Plants	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.46%
Freshwater	Environmental → Aquatic → Freshwater	21.15%
Peat	Environmental → Terrestrial → Peat	7.69%
Sediment	Environmental → Aquatic → Sediment	2.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%
Roots	Host-Associated → Plants → Roots	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.96%
Peat Moss	Host-Associated → Plants → Peat Moss	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.58%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.15%
Loam	Environmental → Terrestrial → Soil → Loam	18.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.62%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.88%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.62%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.81%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.81%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.88%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.92%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300024123	Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5	Host-Associated	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027089	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF015 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029982	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02219280	2088090014	Soil	MNDAATKEMISRRKFLQTASVALAAAGLLSAADVAAQDQKPYPTKNDRXXXXXX
INPhiseqgaiiFebDRAFT_1016792173	3300000364	Soil	MNDXATKXMISRRKFXQTASVALAAAGLLSAADVAAQDQKPYPTKXDRSASDPGPGNSPLNKF*
JGI1027J11758_129693293	3300000789	Soil	MNDAATKEMISRRKFLQTASVALAAAGLLSAADVAAQDQKPYPTKKDRSASDPGPGNSPLNKF*
JGI12635J15846_106952741	3300001593	Forest Soil	MDEGSKKEAYSRRGFLGMGSAAALAAAGMIAATDALAQDKAPYPTKNDRSASAPGPGNPEIDNQNPDSFLPPPSDAGGV
Ga0062387_1001671992	3300004091	Bog Forest Soil	MSDDMKKDAFSRRGFLEMGTAALATAGILSADAAAQNQKPYPTKDDRSASAPGPGNPAIDAQNPDSFLPPPTD
Ga0062387_1011415262	3300004091	Bog Forest Soil	MSDDAKKDTVSRRGFLGMGSAALAAAGMLSAADAAAQEQHPYPAKNDRSASAPGPG
Ga0062387_1016038201	3300004091	Bog Forest Soil	MSEDAKKEMVSRRGFLGRGSVALAAAGMLSASDALAQDQKPYPTRNDRSASAPGPGNPPLDAQNPDSFLPPPSD
Ga0062388_1007391682	3300004635	Bog Forest Soil	MADDANKEVSRRGFLGLGSAALAAAGVLSAADAVAQEQHPYPTKGDRSSSAPGPGNPPIDAQNPDSFLPPQTDAGGV
Ga0066688_106505183	3300005178	Soil	MNDVATKDMFSRRKFLETGSVALAAAGLLSAADAAAQVQKPYPTKNARSATDPGPGNPPLNGQNP
Ga0070709_107729492	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQQQKPENQKPYPTRNDRSTSAPGPGNPALDQQNP
Ga0070713_1000568121	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKTAATLPSLIFRKEELMSEGTKKDKYSRRGFLGITSAILAASGMLPAAEAVEQEQKPYPSKSDRSSSAPGPGNSALDGQNPDSFLPPPSDAG
Ga0070699_1008460211	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNDDATKDMFSRRKFLETGSVALAAVGMLATADAAAQDQNPKPTKNDRSATDPGPVNSPLDAQNPDSTW
Ga0070733_109704731	3300005541	Surface Soil	MSDDTRKDLFSRRGFLGVGTVALAGGMLSRGDAAGQDQKQYPDKNDRSASAPGPGNSPLDAQ
Ga0070732_100627062	3300005542	Surface Soil	MNDDAAQDKDAVSRRAFLGVGSMALAASGVLAAQTAAGQEQQPYPTKTDRSASAPGPGNSQVDDQNPD
Ga0066903_1086993702	3300005764	Tropical Forest Soil	MSDDKGKESLSRRGFLGVGSAALAAGVLKATEVAGQEQKPYPTKNDRSASAP
Ga0070766_109260031	3300005921	Soil	MSDDAKNDLFSRRGFLGMGSAALAAAGMLAANASGQEQRAYPTKGDKSSSAPGPGNSVLDQQNPDSFLPPQSDAGGVQTFK
Ga0070766_111908751	3300005921	Soil	MSDDSTKDMFSRRGFLGIGSAALAAARMLSVDDAVAQDQKPNPTPGNRSASDPGPGNPPLDAQNPDSAWPPAT
Ga0075030_1003133462	3300006162	Watersheds	MSDNVRRELVSRRGFLGAGSAAIAAAGLSATVAMGQEQKPYPNKDDRSASAPGPVNP
Ga0070715_103006632	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQEQKPYPTKNDRSVSAPGPGNP
Ga0116229_111374992	3300009500	Host-Associated	MFSRRGFLGMGSAALAAAGVLSATEAAGQEQHPYPGKNDRSASAPGPGNPQIDSQNPDSFLPPPSDAGGVQTF
Ga0116133_10372471	3300009623	Peatland	MSEDVKEMVSRRGFLGKGSVALAAAGMLSAADALAQDQKPYPTRNDRSASAPGPGNPPLDAQNPDSFLP
Ga0116133_11605101	3300009623	Peatland	MSDDAKKDIVSRRGFLRLGSAALAATGMLSAADAVDQEQKPYPTKDDRSASAPGPGN
Ga0116125_11479431	3300009628	Peatland	MSEGSKPDIVSRRGFLGMGSAALAAAGMLPAADTLAQDQKPYPSKEDRSASAPGPGNPPL
Ga0116117_10389491	3300009635	Peatland	MSGDAKSELVSRRGFLGMGSAAIAAAGMLSAEAEGQEQKPYPTKNDRSASAPGPGNPQIDAQNPDSF
Ga0116135_100404212	3300009665	Peatland	VFKKKERSVSDDIRKDVYSRRGFLGVGSAALAAVGMMSAEAAAQEQRPYPTKDDRSASAPGPGNEQMDNQNPDSFL
Ga0116135_12512951	3300009665	Peatland	MSDDATKEIFSRRGFLGMGSAALAAAGMLKATEATAQEQKPYPTKDDRSASAPGPGNPAIDAQNPDSF
Ga0116101_11791842	3300009759	Peatland	MSEGSKPDIVSRRGFLGMGSAALAAAGMLPAADTLAQDQKPYPSKEDRSASAPGPGNPPLDAQN
Ga0126373_121768122	3300010048	Tropical Forest Soil	MSDDKGKGIFSRRGFLGMGSAALAAAGMLKATEVSGQEQKPYPSKDDRSASAPG
Ga0126372_131941561	3300010360	Tropical Forest Soil	MSDDMGKEFFSRRGFLGMGSAALAAGMLKATEAAGQEPKPYPTKNDRSASAPGPHNP*
Ga0126381_1001626851	3300010376	Tropical Forest Soil	MSDESMKDVSRRGFLEIGSAALAAAGMLSTSDAVGQEQTDRPYPKTDDRSASAPGPGNREIDSQNPDSFLPPQTDAG
Ga0137776_17494862	3300010937	Sediment	MSDDMGKDIFSRRGFLGMGSAALAAAGMLKASEAADQEQKPYPTKDDRSASAPGPGNPAIDQQNQDSFLPPSS
Ga0150983_121186921	3300011120	Forest Soil	MDEKAKDLVSRRGFVGMGSAALAAAGMLAAKGATGQEQRAYPAMGDRNSSAPGPGNSTLDSQNPDSFLPPLTDAGGVATFKYP
Ga0137393_108746142	3300011271	Vadose Zone Soil	MNDDATKDMFSRRKFLETGSVALAAAGLLSAADAAAQDQKPYPRKDDRSASDPG
Ga0137384_108094581	3300012357	Vadose Zone Soil	MSEEASNDMYSRRGFLGVSSAALVAAGMLPTGDASGQEQKPYPSKSDR
Ga0137396_101111073	3300012918	Vadose Zone Soil	MSDDAKKDMYSRRGFLGIGSVALAAAGMLSAADAAGQEQHPYPAKNDKSASAPGPGNP
Ga0137359_110721292	3300012923	Vadose Zone Soil	MSDDAKDDAKKDMYSRRGFLGIGSAALAAAGMLSVADAAGQEQHPYPAKNDKSASAPGPGNP
Ga0137413_103567781	3300012924	Vadose Zone Soil	MNDDATKDMFSRRRFLETGSAALAAAGLLSAADAAAQDQKPYPRKDDRSSSDP
Ga0137419_115941401	3300012925	Vadose Zone Soil	MNDVATKDMFSRRKFLETGSVALAAVGLLSAADAAAQDQKPYPTKNARSATDPGPGNPPL
Ga0137416_112991782	3300012927	Vadose Zone Soil	MSDDAKKDMYSRRGFLGIGSAALAAAGMLSVADAAGQEQHPYPTKSDKSSSAPGPGN
Ga0126369_123237011	3300012971	Tropical Forest Soil	MSDDTGKEILSRRGFLGMGSAALAAAGMLKAAEAAGQEQKPYPAKNDRSVSAPGPGNPAIDQQNPDS
Ga0182018_105655001	3300014489	Palsa	MRDDSKKDVVSRRGFLGMGSVALAAAGMLSVADAAAQEQKPYPAKDSRSASDPGPGNPLLDGQNPDSFFP
Ga0182016_107049281	3300014493	Bog	MFSRRGFLGMGSAALAAAGVLSATEAAGQEQHPYPGKNDRSASAPGP
Ga0182015_1000194528	3300014495	Palsa	MSADAKKDAVSRRGFLGMGSAALAAAGVLSAVDAAAQDQKPYPAKDGRSASAPGPGNPPLDV
Ga0137412_103943602	3300015242	Vadose Zone Soil	MNDDATKDMFSRRRFLETGSAALAAAGLLSAADAAAQDQKPYPRKDDRSSSDPGPGN
Ga0132256_1025751081	3300015372	Arabidopsis Rhizosphere	MGEYSHEERVMSDDSGKASISRRGFLGVGSAALAATGVLKAAEAAGQEQKPYPSKDDRSVTAPGPGN
Ga0132255_1005525851	3300015374	Arabidopsis Rhizosphere	MSDDSGKANISRRGFLGVGSAALAAAGVMKVTEAAGQEQKPYPGKDDRSVSAPGPGNRLLDEQNPDSF
Ga0187820_11478102	3300017924	Freshwater Sediment	MSDDKAKEILSRRGFLGMGSAALAAAGMLNATEMERQQQKGEDQKPYPTKN
Ga0187817_100361261	3300017955	Freshwater Sediment	MSEDAKRDTYSRRGFLGISSVALAVAGMLPATDAAGQEQKPYPSKDDRSASAPGPGNSALDAQNPDSF
Ga0187776_116239102	3300017966	Tropical Peatland	MRGKVARGALSRRAFLGSGSMALATAGMLSKDTVAQAQKAYPTRTDRSASAPAPGNPSLDDENPDSFLPPPTDAGGVQ
Ga0187816_101946352	3300017995	Freshwater Sediment	MSDDREKEIFSRRGFLGIGSAALAAAGMLKATEAAGQEQKPYPTKDDRSASAPGPGNAAMDE
Ga0187804_101572802	3300018006	Freshwater Sediment	MSEDAKRDTYSRRGFLGISSVALAAAGMLPATDAAGQEQKPYPSKGDRSASAP
Ga0187864_101942872	3300018022	Peatland	MSDDAKKDIVSRRGFLRLGSAALAATGMLSAADAVGQEQKPYPTKDDRSASAPGPGNPPLDAQNPDSFL
Ga0187885_103413511	3300018025	Peatland	MSDDTKKDSYSRRGFLGVGSAALVAAGMMSAADAEAQDQKPYPAKNDRSASA
Ga0187875_102245271	3300018035	Peatland	MNGFMHEDEKNTVFSRRGFLGVGSAALAAGMLSAADAAGQNQQYGQDQKVYPTKGDKSSSAPGPGNPQIDAQNPDSFLP
Ga0187871_105406071	3300018042	Peatland	VSDDIRKDVYSRRGFLGVGSAALAAVGMMSAEAAAQEQRPYPTKDDRSASAPGPGNEQMDNQNPDSF
Ga0187859_100086788	3300018047	Peatland	MDESTKKDTYSRRGFLGMGSAAALAAAGMIASTDAVAQDQAPYPTRNDRSASAPGPGNPEIDNQNPDSFLP
Ga0187772_104035051	3300018085	Tropical Peatland	VNKDMEKENFSRRGFLGIGSAALAAAGMLKATDAAGQEQKPYPTKDDRSTSAPGPGNAPIDE
Ga0210399_106493931	3300020581	Soil	MATDAKKDMYSRRGFLGMSSVALAAAGMLPADEAAGQEQKPYPSKSDRSA
Ga0210400_115364792	3300021170	Soil	MSDDAKKDMVSRRGFLGVGSAALAAAGMLSAADAAGQEQKPYPTKNDRSASAPGPGN
Ga0210386_106507411	3300021406	Soil	MNDEAKKDAVSRRGFLGMGSAALAAAGLISTASAVGQEQKQYPSKDSRSASSPGPGNAALDAQ
Ga0210383_104427451	3300021407	Soil	MSEEAKKDMYSRRGFLGMSSGALAAAGMLSSAEAAGQEQKSYPSKGDRSAS
Ga0210383_115657852	3300021407	Soil	MAEDAKSEVSRRGFLGMGSAALAAAGVLSAADAVAQEQHPYPTKGDRSSSAPGPGNPPIDAQNPDSF
Ga0210394_109965351	3300021420	Soil	MSDDAKKDLVSRRGFLGMGSAALAAAGILSAADAAAQEQRPYPTKGDRDSSAPGPGNPAIDSQNP
Ga0210391_112200551	3300021433	Soil	MSDDANKDRFSRRGFLGMSSVALAAAGMLSADAAGQEQRPYPTKNERSASAPGPGNPPLDAQNPDS
Ga0210390_113480712	3300021474	Soil	MSDDTKNDTFSRRGFLGMGSAALAAAGILAKDVAAQERAPYPTKGDKSSSAPGPGNSVLDQQNPDSFLPPQSDAG
Ga0210392_114570382	3300021475	Soil	MNDEMKDGIMKDETKKDGVYSRRGFLGVGSAAFAAAGILSATDAAAQEQKPYPAKNDRSA
Ga0224549_10252361	3300022840	Soil	MSEDAKDSTVSRRGFLGMGSAALAAAGVLSAADAAGQDQKPYPTANDRSASAPGPGNPTLDSQNPD
Ga0224561_10129701	3300023030	Soil	MSDDAKNDSFSRRGFLGMGSAAIAAAGMLSADAAGQEQKPYPTKNDRSASAPGPG
Ga0228600_10141071	3300024123	Roots	MDEGSKKEAYSRRGFLGMGSAAALAAAGMIAATDAMAQDQAPYPTKNDRSASAPG
Ga0208193_10649841	3300025463	Peatland	MSDDTKKDSYSRRGFLGVGSAALVAAGMMSAADAEAQDQKPYPAKNDRSASAPGPGNPPLDEQ
Ga0207685_106687171	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQEQKPYPTKNDRSVSAPGPGNPA
Ga0207664_102473371	3300025929	Agricultural Soil	MGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQEQKPYPTKNDRSVSAPGPGNPAMDQQNPDSFLPPA
Ga0207665_100550651	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQEQKPYPTKNDRSVSAPGPGNPAMDQQ
Ga0209377_12408331	3300026334	Soil	MSDDVKDDAKKDMYSRRGFLGIGSAALAAAGMLSAADAAGQEQHPYPAKNDKSASAPGPGNPALDAQNPDSFLPPPS
Ga0179587_106568861	3300026557	Vadose Zone Soil	MSEDSKKDVFSRRGFLGVGSAALAAAGMLSVADAAAQDQNPNPTNGNRSKSDPGPKNA
Ga0207943_1093941	3300027089	Forest Soil	MSNDPKKDLFSRRGFLEMGTAALAAAGVLSADAAAQNQKPYPTKDDRSASAPGPGNPAIDAQNPD
Ga0209735_10646152	3300027562	Forest Soil	MNDDSTKDMFSRRQFLGTGSAALAAAGMLTVADAAAQDQKQNPTKGSRSVSDPGPGNPPLDAQSPDS
Ga0209115_10345422	3300027567	Forest Soil	MSNDAKKEAFSRRGFLGMGSAAIAAAGMLSADAASQEQKPYPTKNDRSASAPGPGNPPLDTQ
Ga0209420_10733022	3300027648	Forest Soil	MSKEKAENETFSRRGFLGMGSAALAAAGMLSSADAAGQEEKPYPTVNDRSASAPGPGNPALD
Ga0209588_12417003	3300027671	Vadose Zone Soil	MNDDATKDMFSRRRFLGTGSAALAAAGLLSAADAAAQDQKPYPTKNDRSATDPGPGNPPL
Ga0209333_10056471	3300027676	Forest Soil	MSKEKAENETFSRRGFLGMGSAALAAAGMLSSADAAGQEEKPYPTVNDRSASAP
Ga0209139_102609651	3300027795	Bog Forest Soil	MSDDTKKDAFSRRGFLEIGTAALAAAGMLSADAAAQNQKPYPTKDDRSASAPGPGNPAIDAQNPDSF
Ga0209274_105614722	3300027853	Soil	MSDDANKDVVSRRGFLGMGSAALAAAGMLSAVDASSQLEHPYPAKGDRSASAPGPGNPAIDGQNPDSFLPP
Ga0209698_102152443	3300027911	Watersheds	MAVGAKQELYSRRGFLGMSSAALAAAGVLPAVEAAAQEQKPYPSKNDRS
Ga0209698_109114331	3300027911	Watersheds	MSEGAKKDKYSRRGFLGMGSAALAAAGMTPAAEAVGQEQKPYPSKDDRSASAPGPGNSA
Ga0302156_104951571	3300028748	Bog	VSNDLKTDMFSRRGFLGMGSAALAAAGVLSATEAAGQEQHPYPGKNDRSASAPG
Ga0308309_101979432	3300028906	Soil	MSDDAKKDLVSRRGFLGMGSAALAAAGILSAEASAQEQQHPYPTKGDRSSSAPGPGNPAIDSQNPDS
Ga0311328_106889911	3300029939	Bog	VSNDLKTDMFSRRGFLGMGSAALAAAGVLSATEAAGQEQHPYPGKNDRSASAPGPGNPQI
Ga0311340_100593504	3300029943	Palsa	MSDETRKDLFSRRGFMEMGSAALAAAGMLSATDAAAQDQKPYPTKNDRSASAPGPGNPPLDAQNPDSFLPPP
Ga0311352_113545732	3300029944	Palsa	MSGDAKSELVSRRGFLGMGSAAIAAAGMLSAEAEGQEQKPYPTKNDRS
Ga0302277_13132762	3300029982	Bog	MSGDAKSELVSRRGFLGMGSAAIAAAGMLSAEAEGQEQKPYPTKNDRSASAPGPGNPQIDAQNPDSFLPP
Ga0302177_105844091	3300030053	Palsa	MSDDARNDTYSRRGFLGMGSAALAAAAMLSAADAGAQDQKPYPTKSDRSASAPGPGNPPLDDQNPDSFLPPSTD
Ga0265760_101574802	3300031090	Soil	MTEEGKKDTYSRRGFLGVGSAALAAAGMLSAADATAQDQKPYPTKSDRSASAPGPG
Ga0170824_1111066972	3300031231	Forest Soil	MNYDAKKDSFSRRGFLGVGSVALAGGILSAGAAAGQDQNPYPNKTDRSASAPGPGNSPLDAQNPDSFLPP
Ga0307476_101299481	3300031715	Hardwood Forest Soil	MSDEAKESVSRRGFLGMGSAALAAGMLSAEAAAQEQKQYPAKSDRSASAPGPGNAQIDDQNPDSF
Ga0307477_111215932	3300031753	Hardwood Forest Soil	VLRKEKSKNNNEDADRDIYSRRGFLGMGSAALAAAGLVSASDAAAQEQRPYPSKSDRSTSAPGPINPPL
Ga0307478_117546881	3300031823	Hardwood Forest Soil	MSDDTKNDTFSRRGFLGMGSAALAAAGILAKDVAAQERAPYPTKGDKSSSAPGPGNSVLDQQNPDSFLPPQSDAGGVQT
Ga0310912_107665013	3300031941	Soil	MSDDVGKEIFSRRGFLGMGSAALAAAGMLKATEMAAQEQKPYPTKNDRSASAPGPGNPPIDQQNPD
Ga0335085_102267993	3300032770	Soil	MSDDKAKEIFSRRGFLGMGSAALAAAGMLKATEMEGQQPKGEDQKPYPTKNDRSVSAPG
Ga0335080_113321012	3300032828	Soil	MSDESTKDVSRRGFLEMGSAALAAAGMLSAPAVAQEQKSYPTKDDRSASAPGPGNREIDSQNPDSFLPPQTDAGGV
Ga0335069_101714571	3300032893	Soil	VGDEKAKEIFARGFLRMGSKALAAGMLKATKMETQQQKGQDQKPYPSKNDRSVSAPGPGNPSLDQQNPDSFFPVHD
Ga0335072_104879811	3300032898	Soil	MSDDAKNDAFSRRGFLGMGSAALAAAGMLGARDAGAQEQRPPYPTKGDKSSSAPG
Ga0335077_111304801	3300033158	Soil	MSDDRDKEIFSRRGFLGIGSAVLAGVGMLKATKVTGQDQKPYPGKDDRSSSAPGPGNPAIDEQNPDSFLPPPTDAGGV
Ga0334790_121044_2_196	3300033887	Soil	MNDDAKTDLVSRRGFLGVGSAALAAGMLSAVDAAGQDQKLYPTKTDRSATAPGPGNSQLDAQNPD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098131

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences