Metagenome Family F098119

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098119
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	60 residues
Representative Sequence	MFSFSPMKRWQGFALLLLTIQVPAFAQGIDLQNTRSFQGGPINNETVGQLTVKWVYQTTPDT
Number of Associated Samples	88
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.99 %
% of genes near scaffold ends (potentially truncated)	98.08 %
% of genes from short scaffolds (< 2000 bps)	92.31 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (31.731 % of family members)
Environment Ontology (ENVO)	Unclassified (34.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.077 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 23.33% β-sheet: 0.00% Coil/Unstructured: 76.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF03401	TctC	5.77
PF13410	GST_C_2	4.81
PF02852	Pyr_redox_dim	1.92
PF02775	TPP_enzyme_C	1.92
PF16868	NMT1_3	1.92
PF01977	UbiD	1.92
PF03144	GTP_EFTU_D2	0.96
PF12034	DUF3520	0.96
PF00920	ILVD_EDD	0.96
PF13442	Cytochrome_CBB3	0.96
PF01266	DAO	0.96
PF02738	MoCoBD_1	0.96
PF16655	PhoD_N	0.96
PF12450	vWF_A	0.96
PF02776	TPP_enzyme_N	0.96
PF01011	PQQ	0.96
PF00313	CSD	0.96
PF02782	FGGY_C	0.96
PF00749	tRNA-synt_1c	0.96
PF06537	DHOR	0.96
PF06983	3-dmu-9_3-mt	0.96
PF07859	Abhydrolase_3	0.96
PF00583	Acetyltransf_1	0.96
PF13458	Peripla_BP_6	0.96
PF07167	PhaC_N	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	5.77
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	1.92
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.92
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.96
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.96
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.96
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.96
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.08 %
Unclassified	root	N/A	40.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	35.58 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	29.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.85 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.96 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	28.85 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.96 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17	0.96 %
unclassified Chromatiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales	0.96 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	28.85 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.96 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.96 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17	0.96 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000044\|ARSoilOldRDRAFT_c018089	Not Available	613	Open in IMG/M
3300004633\|Ga0066395_10360904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	810	Open in IMG/M
3300004643\|Ga0062591_102533066	Not Available	540	Open in IMG/M
3300005163\|Ga0066823_10139959	Not Available	528	Open in IMG/M
3300005177\|Ga0066690_10257612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1172	Open in IMG/M
3300005184\|Ga0066671_11088303	Not Available	500	Open in IMG/M
3300005186\|Ga0066676_10083360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1903	Open in IMG/M
3300005295\|Ga0065707_10364346	Not Available	899	Open in IMG/M
3300005330\|Ga0070690_100121610	Not Available	1752	Open in IMG/M
3300005332\|Ga0066388_105546538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	639	Open in IMG/M
3300005337\|Ga0070682_101210266	Not Available	638	Open in IMG/M
3300005406\|Ga0070703_10492649	Not Available	550	Open in IMG/M
3300005440\|Ga0070705_101887605	Not Available	508	Open in IMG/M
3300005444\|Ga0070694_100027158	All Organisms → cellular organisms → Bacteria	3716	Open in IMG/M
3300005445\|Ga0070708_102119414	Not Available	520	Open in IMG/M
3300005446\|Ga0066686_11071359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	519	Open in IMG/M
3300005466\|Ga0070685_10964076	Not Available	638	Open in IMG/M
3300005546\|Ga0070696_100272855	All Organisms → cellular organisms → Bacteria → Proteobacteria	1286	Open in IMG/M
3300005555\|Ga0066692_10722692	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	616	Open in IMG/M
3300005569\|Ga0066705_10965978	Not Available	505	Open in IMG/M
3300005586\|Ga0066691_10203209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1154	Open in IMG/M
3300005586\|Ga0066691_10620152	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300005617\|Ga0068859_101764007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17	684	Open in IMG/M
3300005713\|Ga0066905_102074070	All Organisms → cellular organisms → Bacteria → Proteobacteria	529	Open in IMG/M
3300005840\|Ga0068870_10084106	All Organisms → cellular organisms → Bacteria → Proteobacteria	1765	Open in IMG/M
3300005844\|Ga0068862_102267640	Not Available	554	Open in IMG/M
3300006032\|Ga0066696_10732621	Not Available	633	Open in IMG/M
3300006034\|Ga0066656_10013280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4225	Open in IMG/M
3300006163\|Ga0070715_10427092	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300006914\|Ga0075436_100871265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	673	Open in IMG/M
3300007076\|Ga0075435_101310167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	634	Open in IMG/M
3300007255\|Ga0099791_10582514	Not Available	546	Open in IMG/M
3300007258\|Ga0099793_10034521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2169	Open in IMG/M
3300007788\|Ga0099795_10499343	Not Available	567	Open in IMG/M
3300009012\|Ga0066710_102032409	Not Available	850	Open in IMG/M
3300009012\|Ga0066710_104196329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	538	Open in IMG/M
3300009088\|Ga0099830_10195994	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300009137\|Ga0066709_103254384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	592	Open in IMG/M
3300009137\|Ga0066709_103594575	Not Available	562	Open in IMG/M
3300010047\|Ga0126382_12530497	Not Available	501	Open in IMG/M
3300010304\|Ga0134088_10352207	Not Available	715	Open in IMG/M
3300010358\|Ga0126370_11217371	Not Available	701	Open in IMG/M
3300010359\|Ga0126376_11519983	Not Available	699	Open in IMG/M
3300010359\|Ga0126376_12057120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	614	Open in IMG/M
3300010361\|Ga0126378_12518177	Not Available	588	Open in IMG/M
3300010366\|Ga0126379_10746891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1075	Open in IMG/M
3300010366\|Ga0126379_12019434	Not Available	679	Open in IMG/M
3300010401\|Ga0134121_12896915	Not Available	526	Open in IMG/M
3300010403\|Ga0134123_10855318	Not Available	910	Open in IMG/M
3300011269\|Ga0137392_10064112	All Organisms → cellular organisms → Bacteria → Proteobacteria	2806	Open in IMG/M
3300011271\|Ga0137393_10081480	All Organisms → cellular organisms → Bacteria → Proteobacteria	2603	Open in IMG/M
3300012199\|Ga0137383_11077391	Not Available	583	Open in IMG/M
3300012203\|Ga0137399_10302274	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300012203\|Ga0137399_10356435	Not Available	1215	Open in IMG/M
3300012203\|Ga0137399_10620038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	910	Open in IMG/M
3300012203\|Ga0137399_10680317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	866	Open in IMG/M
3300012203\|Ga0137399_11781889	Not Available	504	Open in IMG/M
3300012205\|Ga0137362_10867014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	772	Open in IMG/M
3300012206\|Ga0137380_10926692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	747	Open in IMG/M
3300012209\|Ga0137379_11118782	Not Available	693	Open in IMG/M
3300012356\|Ga0137371_10846571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	696	Open in IMG/M
3300012356\|Ga0137371_11195905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	567	Open in IMG/M
3300012361\|Ga0137360_11022354	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300012683\|Ga0137398_10353964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	994	Open in IMG/M
3300012918\|Ga0137396_10230405	Not Available	1365	Open in IMG/M
3300012918\|Ga0137396_11194833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	536	Open in IMG/M
3300012922\|Ga0137394_10479359	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300012923\|Ga0137359_11672068	Not Available	524	Open in IMG/M
3300012925\|Ga0137419_11016235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	687	Open in IMG/M
3300012925\|Ga0137419_11464203	Not Available	578	Open in IMG/M
3300012930\|Ga0137407_10675792	All Organisms → cellular organisms → Bacteria → Proteobacteria	972	Open in IMG/M
3300012930\|Ga0137407_11333356	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300012930\|Ga0137407_11859720	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300012944\|Ga0137410_10929328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	737	Open in IMG/M
3300012944\|Ga0137410_12085946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	505	Open in IMG/M
3300012957\|Ga0164303_10441925	Not Available	816	Open in IMG/M
3300012976\|Ga0134076_10469735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	570	Open in IMG/M
3300015242\|Ga0137412_11294830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	508	Open in IMG/M
3300015359\|Ga0134085_10297983	Not Available	709	Open in IMG/M
3300015359\|Ga0134085_10543221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	535	Open in IMG/M
3300017657\|Ga0134074_1162325	Not Available	784	Open in IMG/M
3300017959\|Ga0187779_10412387	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300017997\|Ga0184610_1125176	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300018468\|Ga0066662_10279787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1386	Open in IMG/M
3300018482\|Ga0066669_10928504	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
3300024177\|Ga0247686_1039492	Not Available	570	Open in IMG/M
3300024219\|Ga0247665_1026671	Not Available	740	Open in IMG/M
3300025905\|Ga0207685_10198187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	941	Open in IMG/M
3300026285\|Ga0209438_1011697	All Organisms → cellular organisms → Bacteria → Proteobacteria	2942	Open in IMG/M
3300026306\|Ga0209468_1043896	All Organisms → cellular organisms → Bacteria	1531	Open in IMG/M
3300026317\|Ga0209154_1173727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	870	Open in IMG/M
3300026328\|Ga0209802_1295612	Not Available	537	Open in IMG/M
3300026329\|Ga0209375_1287780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	538	Open in IMG/M
3300026376\|Ga0257167_1061123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	585	Open in IMG/M
3300026557\|Ga0179587_11077270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	529	Open in IMG/M
3300027643\|Ga0209076_1210697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	530	Open in IMG/M
3300027915\|Ga0209069_10695523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	596	Open in IMG/M
3300028792\|Ga0307504_10035849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1343	Open in IMG/M
3300031184\|Ga0307499_10123775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	733	Open in IMG/M
3300031740\|Ga0307468_100069924	Not Available	1943	Open in IMG/M
3300032174\|Ga0307470_10721484	Not Available	762	Open in IMG/M
3300032180\|Ga0307471_100101491	All Organisms → cellular organisms → Bacteria → Proteobacteria	2612	Open in IMG/M
3300034090\|Ga0326723_0553697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.23%
Host-Associated	Host-Associated	5.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.31%
Plants	Host-Associated → Plants	5.77%
Aquatic	Environmental → Aquatic	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Sediment	Environmental → Aquatic → Sediment	1.92%
Peat	Environmental → Terrestrial → Peat	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.88%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	31.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000044	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300024177	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27	Environmental	Open in IMG/M
3300024219	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ARSoilOldRDRAFT_0180891	3300000044	Arabidopsis Rhizosphere	MFSFRHGFLLLLLMVQVPAFAQGIDFNTRSFQGGPINEGTVGQLKVKWVYQTVPDTGNVNAAQG
Ga0066395_103609041	3300004633	Tropical Forest Soil	MLSFPLMKRWQGLALLLLTIQVPAFAQGIDFNTRSFQGGPINEATVGQLAVKWVYQ
Ga0062591_1025330661	3300004643	Soil	MFNFRRWHGFALLLLTVQAPAFAQGIDFNTRSFQGGPINEETVGQLTVKWVY
Ga0066823_101399591	3300005163	Soil	MLSFSPMKRWQGFALLLLTIPVPALADGIDLQNTRSFQGGPINDETVGQLKVKWVYQTTPDTGTASS
Ga0066690_102576123	3300005177	Soil	MFSFPAVKRWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINNETVSQLRVKWVYQTAPDTGTAS
Ga0066671_110883032	3300005184	Soil	MFSFRPMKRWQAFAMLLLTVQVPAFAQGIDFNTRSFQGGPINEATVGQLTVKWVYQTV
Ga0066676_100833602	3300005186	Soil	MVMFSFPPMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSQLRVKWVYQTAPDTG
Ga0065707_103643461	3300005295	Switchgrass Rhizosphere	MFNFRQGFVLLLLTVHAPAFAQGIDFNTRSFQGGPINEGSVGQLKV
Ga0070690_1001216101	3300005330	Switchgrass Rhizosphere	MFNFRRWHGFALLLLTVQVPAFAQGIDFNTRSFQGGPINDETVGQLAVKWVY
Ga0066388_1055465381	3300005332	Tropical Forest Soil	MFSFAPMKRWQGFTLLLLTVQVPAFADGINFNTRSFQGGPINEETVSQLSVKWVYQ
Ga0070682_1012102662	3300005337	Corn Rhizosphere	MFNFRRWHGFALLLLTVQVPAFAQGIDFNTRSFQGGPINDETVGQLAVKWVYQTV
Ga0070703_104926492	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MFSFRQGFVLLLLTVQAAAFAQGIDVNTRSFQGGPINEETVGQL
Ga0070705_1018876051	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MFKFQPMKCWQGFALLLLAIQLPAFAQGIDFNTRSFQGGPINEASVGQLAVRWVYQTVPDTGTASAAQGSI
Ga0070694_1000271585	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MFSFRQGFVLLLLTVQAAAFAQGIDVNTRSFQGGPINEETVGQLKVKWVYQTVPDTGT
Ga0070708_1021194141	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MFSFRPIKRWQGFVMLLATVQVPAFAQGIDFNTRSFQGGPINEATVGQLTVKWVYQT
Ga0066686_110713591	3300005446	Soil	MVMFSFPPMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSQLRV
Ga0070685_109640762	3300005466	Switchgrass Rhizosphere	MFSFRQGFVLLLLTVQAAAFAQGIDVNTRSFQGGPINEETVGQLKVK
Ga0070696_1002728551	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MFRHGFAMLLLAMQVPAFADGVDFNTRSFQGGPINDATVGQLTVKWVYQTVPDTGT
Ga0066692_107226921	3300005555	Soil	MLNFRPIRRWQGFAMLLVTVQVPAFAQGIDFNTRSFQGGPINEATVGQLTVKWVYQ
Ga0066705_109659782	3300005569	Soil	VFNFAPVKRWQGFALLLLTVQVPAFAAGIDFNTRSFEGGPINEGTVGQLTVKWVYQTV
Ga0066691_102032091	3300005586	Soil	MLSFPLMKRWQGFTLLLLTIQVPAFAEGIDFNTRSFEGGPINKETVSQLRVKWVYQ
Ga0066691_106201521	3300005586	Soil	MFSFPAVKRWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINNETVSQLRVKWVYQTA
Ga0068859_1017640072	3300005617	Switchgrass Rhizosphere	MFNFRRWHGFALLLLTVQVPAFAQGIDFNTRSFQGGPINDETVGQLAVKWVYQTVPDTGT
Ga0066905_1020740701	3300005713	Tropical Forest Soil	MFSFRQGFVLLLLAVQAPAFAQGIDFNTRSFQGGPINEGTVGQLKVKWVYQTVPDTGNVNAAQGSI
Ga0068870_100841061	3300005840	Miscanthus Rhizosphere	MFSFRQGFVLLLLTVQAAAFAQGIDVNTRSFQGGPINEETVGQLKVKWVYQTVP
Ga0068862_1022676401	3300005844	Switchgrass Rhizosphere	MFSFRQGFVLLLLTVQAAAFAQGIDVNTRSFQGGPINEETVGQLKVKWVYQTV
Ga0066696_107326211	3300006032	Soil	MFSFRPMKRWHAFAMLLLTVQVPAFGQGIDFNTRSFQGGPINEATVGQLTVKWVYQTVPDTGTT
Ga0066656_100132801	3300006034	Soil	MLSFPPMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSQLRVKW
Ga0070715_104270921	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MLNFPPMKRWQGFALLLLTIPVSAFAEGIDLLNTRSFQGGPINEETVSQLRVRWVYQTVPDTGT
Ga0075436_1008712652	3300006914	Populus Rhizosphere	MFSFPPMKRWQGFAMLLLAVQVPAFAQGIDFNTRSFQGGPINEETVGQLTVKWVYQ
Ga0075435_1013101671	3300007076	Populus Rhizosphere	MLNFPPMKRWQGFALLLLTMPVPAFAEGIDLQNTRSFEGGPINKYTVNDLKVKWVYQTAPDTGTVNN
Ga0099791_105825141	3300007255	Vadose Zone Soil	MKRWQGFALLLLTIPVPAFAQIDLQNTRSFHGGPINNETVSQLKVKWVYQTVADTGT
Ga0099793_100345214	3300007258	Vadose Zone Soil	MTSEAFMFSFPSMKRWQGFALLLLTVQVPAFAQGIDFNTRSFQGGPINEATVSQLTVKWVYQTV
Ga0099795_104993431	3300007788	Vadose Zone Soil	MKRWQGFALLLLTIQVPAFAEGIDLLNTRSFHGGPINNETVDQLAVKWVYQTVPDTGTASSAQGSVS
Ga0066710_1020324092	3300009012	Grasslands Soil	MFRQGLAMLLLAVQLPAFADGIDFNTRSFQGGPINEATVGQLSVKWVYQTVPDTGTA
Ga0066710_1041963291	3300009012	Grasslands Soil	MLSFPSMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSQLRVKWVYQTAPDTGTASNAQGSI
Ga0099830_101959941	3300009088	Vadose Zone Soil	MKRWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINDETVSQLRVKW
Ga0066709_1032543842	3300009137	Grasslands Soil	MFSFSPMKRWQGFALLLLTIQVPAFAEGIDLQNTRSFHGGPINNETVSQLRVKWVYQTAPDT
Ga0066709_1035945752	3300009137	Grasslands Soil	MVMFSFPSMKRWQGFALLLSTIQVPALAEGIDLQNTRSFQGGSINNETVSRLRVKWVYQTAPDTGTASNAQGS
Ga0126382_125304971	3300010047	Tropical Forest Soil	MFSFRHWHGFALLLLSIQAPAFAQGIDFNTRSFHGGPINDDTVGRLTVRWVYQTVPDTGTVNAAQGSIS
Ga0134088_103522071	3300010304	Grasslands Soil	MFSFSPMKRWQGFALLLLTIQVPAFAEGIDLQNTRSFHGGPINNETVGQLRVKWVYQTTADTGTA
Ga0126370_112173711	3300010358	Tropical Forest Soil	MFSFTSMTRWQGFALLLLTMQVPAFAQGIDLQNTRSFEGGPINKNTVNN
Ga0126376_115199831	3300010359	Tropical Forest Soil	MFSFPLIKRWQGVALLLLTIQVPAFAEGIDLQNTRSFEGGPINKNTVKDLKVKWVYQTAPDTGTVNNA
Ga0126376_120571201	3300010359	Tropical Forest Soil	MKRWQGFALLLITMPVPAFAQGIDFNTRSFEGGPINEATVGQLTVKWVYQTVPD
Ga0126378_125181771	3300010361	Tropical Forest Soil	MAGEAFMFSFTSMKRWQGFALLLLTIQVPAFAEGIDLQNTRSFEGGPINKNTVNDLKVKWVYQTAPDTGTVNN
Ga0126379_107468912	3300010366	Tropical Forest Soil	MKCWQGFALLLLTVPVPVFAQGIDFNTRSFQGGPVNEGTVGQLTVRWVYQ
Ga0126379_120194341	3300010366	Tropical Forest Soil	MFSFSCVKRLGFALPLLTIQVPAFADGIDLQNRSFEGGPINKNTVNDLKVKWVYQTAPDTGTVNNALGS
Ga0134121_128969151	3300010401	Terrestrial Soil	MFSFPPMKRWQGFALLLLTMPVPAFAQGIDLQNTRSFHGGPINNETVGQLSVKWVYQTTADTGT
Ga0134123_108553182	3300010403	Terrestrial Soil	MFSFRHGFLLLLLMVQVPAFAQGIDFNTRSFQGGPINEGTVGPLKVKWVY
Ga0137392_100641121	3300011269	Vadose Zone Soil	MKRWHGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINNETVSQLRVKWVYQTAPDTGTASNAQGS
Ga0137393_100814804	3300011271	Vadose Zone Soil	MKRWHGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINEETVSQLTVKWVYQTVPDTGTA
Ga0137383_110773911	3300012199	Vadose Zone Soil	MKRWQGFALLLLTIQVPAFAEGIDLQNTRSFHGGPINNETVSQLGVKWLYQTVPDTGTASNAQ
Ga0137399_103022741	3300012203	Vadose Zone Soil	MTSEAFMFSFPPMKRWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINDETVSQIRVKWVYQTAP
Ga0137399_103564351	3300012203	Vadose Zone Soil	MTSEAFMFSFPPMKRWQGFALLLLTVQVPAFAQGIDFNTRSFQGGPINEATVS
Ga0137399_106200381	3300012203	Vadose Zone Soil	MAGLIRITSEAFMFSFPPIKRWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINDETVGQLRVKWVYQ
Ga0137399_106803172	3300012203	Vadose Zone Soil	MKRWQGFALLLWTIQVPAFAEGIDLQNTRSFQGGPINDETVGQLTVKWVYQTVPDTGTASNAQGSISST
Ga0137399_117818891	3300012203	Vadose Zone Soil	MKRWQVFALLLSTIQAPAFAEGVDLLNTRSFHGGPINNETVGQLTVKWVYQTVPDTG
Ga0137362_108670141	3300012205	Vadose Zone Soil	MKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSQLRVKWVYQTAPDTGTAS
Ga0137380_109266921	3300012206	Vadose Zone Soil	MTSEAFMFSFSSMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSQLRVKWVYQTVPDTGTASNAQGS
Ga0137379_111187821	3300012209	Vadose Zone Soil	MTSEAFMFSFSSMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSQLRV
Ga0137371_108465712	3300012356	Vadose Zone Soil	MTSEAFMFSFSAMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSRLRVKWVYQTAPDTGTASNA
Ga0137371_111959051	3300012356	Vadose Zone Soil	MTSEAFMLSFPPMKRWQGFALLLLTIQAPAFAEGIDLLNTRSFQGGPINNETVSQLRVKW
Ga0137360_110223542	3300012361	Vadose Zone Soil	MTSEAFMLDFPPMKRWQGFALLLLTIQVPAFAQGIDLQNTRSFQGGPINEETVSQLSVKWVYQTAPDTG
Ga0137398_103539644	3300012683	Vadose Zone Soil	MTSEAFMFSFPPMKRWQGFALLLLTVQVPAFAQGIDFNTRSFQGGPINEATV
Ga0137396_102304054	3300012918	Vadose Zone Soil	MKRWQGFALLLLTIQVPAFAEGIDLQNTRSFRGGPINNETVGQLTVKWVYQTVPDTGTAN
Ga0137396_111948332	3300012918	Vadose Zone Soil	MTSEAFMLNFPPMKRWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINNETVGQLTVKWVYQTVPDTGTANSA
Ga0137394_104793591	3300012922	Vadose Zone Soil	MTSEAFMFTFPAMKRWQGFALLLWTIQVPAFAEGIDLQNTRSFQGGPINDETVSQLRVKWVYQT
Ga0137359_116720681	3300012923	Vadose Zone Soil	MKRWQGFAMLLLTIPVPAFAQIDLQNTRSFHGGPINNETVSQLKVKWVYQTVADTGTASN
Ga0137419_110162352	3300012925	Vadose Zone Soil	MFSFPAMKRWHGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINNETVGQLTVKWVYQTVPDTGTANSAQGSI
Ga0137419_114642032	3300012925	Vadose Zone Soil	MISEAFMFSFPPMKRWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINDETVSQLRVKW
Ga0137407_106757923	3300012930	Vadose Zone Soil	MFGFPPMKRWQGFALLLLTIPVPAFAEGIDLLNTRSFQGGPINNETVSQLRVKWVYQTTPDTGTASNAQGS
Ga0137407_113333561	3300012930	Vadose Zone Soil	MTSEAFMLSFSPMKSWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINEETVSQLTVKWVYQTAPDTGTA
Ga0137407_118597201	3300012930	Vadose Zone Soil	MTSEAFMFSFSPMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVGQLGVKWVYQT
Ga0137410_109293281	3300012944	Vadose Zone Soil	MAREAFMFSFPLMKRWQGFALLLLTIQVPAFAQGIDFNTRSFQGGPINDETVSQLTVRWV
Ga0137410_120859461	3300012944	Vadose Zone Soil	MTSEAFMFSFPPMKRWQGFALLLLTVQVPAFAQGIDFNTRSFQGGPINEATVSQLTVKWVYQTVPDTGTT
Ga0164303_104419251	3300012957	Soil	MFSFRQGFVLLLLTVQAAAFAQGIDVNTRSFQGGPINEETVGQLKVKWVYQ
Ga0134076_104697351	3300012976	Grasslands Soil	MKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSQLRVKWVYQTAPDTG
Ga0137412_112948301	3300015242	Vadose Zone Soil	MKRWQGFTLLLLTIQVPAFAEGIDFNTWSFEGGPINKDTVSQLRVKWVYQTAPDTGTAS
Ga0134085_102979831	3300015359	Grasslands Soil	MKRWQVFALLLLTIQIPAFAEGIDLLNTRSFQGGPINNETVSQLTVKWVYQTAPDT
Ga0134085_105432212	3300015359	Grasslands Soil	MKRWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINNETVSQLTVKWVYQTAPD
Ga0134074_11623251	3300017657	Grasslands Soil	MVMFSFPPMKRWQGFALLLLTTIQVPALAEGIDLQNTRSFHGGPINNETVSRLRAKWVYQTAPDTGTASNAQ
Ga0187779_104123872	3300017959	Tropical Peatland	MLTFRSMKCWQGFAFLLLTIPVPAFAQGIDFNTRSFQGGAINEATVGQLTVKWVYQTVPDTGTVNAAQ
Ga0184610_11251761	3300017997	Groundwater Sediment	MFSFPTMKRWHGFALLLLTIQVPAFAEGIDLQNTRSFHGGPINNESVSQLRVKWVYQTVPDTGTASNAQGSI
Ga0066662_102797872	3300018468	Grasslands Soil	MLSFPPMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFQGGPINNETVSQLRVKWVYQTAPDTGTA
Ga0066669_109285044	3300018482	Grasslands Soil	MFSFSPMKRWQGFALLLLTIQVPAFAQGIDLQNTRSFQGGPINNETVGQLTVKWVYQTTPDT
Ga0247686_10394921	3300024177	Soil	MFSFRQGFVLLLLTVQAAAFAQGIDVNTRSFQGGPINEETVGQLKVKWVYQTVPDTGTVNAA
Ga0247665_10266712	3300024219	Soil	MFSFRQGFVLLLLTVQAAAFAQGIDVNTRSFQGGPINEETVGQLKVKWVYQTVPDTGTVNAAQGSI
Ga0207685_101981873	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MFRYFATLLLAVPVTVFAQGIDFDTRSFQGGPINERSVSQLTVKWVYQ
Ga0209438_10116976	3300026285	Grasslands Soil	MFSFPPMKRWQGFALLLLTIQVPAFAQGIDFNTRSFQGGPINEATVGQ
Ga0209468_10438961	3300026306	Soil	MFSFPAVKRWQGFALLLLTIQVPAFAEGIDLQNTRSFQGGPINNETVSQLRVK
Ga0209154_11737273	3300026317	Soil	MFSFSSMKRWQGFALLLSTIQVPAFAEGIDLQNARSFQGGPINNETVSQLRLK
Ga0209802_12956121	3300026328	Soil	MFSFPPLKRWQGFGLLLLTIQVPAFAEGIDLQNTRSFHGGPINNETVSQLGVKWVY
Ga0209375_12877802	3300026329	Soil	MVMFSFPPMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFHGGPINNETVSQLRV
Ga0257167_10611231	3300026376	Soil	MFSFPPMKRWQGFALLLLTIQVPAFAEGIDLLNTRSFEGGPINKETVSQLRV
Ga0209474_107582341	3300026550	Soil	MFSFRPMKRWHAFAMLLLTVQVPAFGQGIDFNTRSFQGGPINEATV
Ga0179587_110772701	3300026557	Vadose Zone Soil	MFSFPPMKSWQGFALLLLTIQVPAFAQGIDFNTRSFQGGPINDETVSQLTVKWVYQTVPD
Ga0209076_12106972	3300027643	Vadose Zone Soil	MFSFPSMKRWQGFALLLLTVQVPAFAQGIDFNTRSFQGGPINEATVSQLTVKWVYQ
Ga0209069_106955231	3300027915	Watersheds	MFSFLGMMRWQGFALLVLLTLQVPAFADGIDLQNTRSFEGGPIDKNTVSHLKVKWVYQTAPDTGTLNNALGSVSS
Ga0307504_100358491	3300028792	Soil	MFSFPTMKRWHGFALLLLTIQVPAFAAGIDLQNTRSFQGGPINDETVGQLTVKWVYQTVPDTGTA
Ga0307499_101237752	3300031184	Soil	MFSFSPMKRWQGFALLLLTMHAPAFAEGIDLQNTRSFNGGPINDATVGQLKVKWVYQTTPDTGT
Ga0307468_1000699242	3300031740	Hardwood Forest Soil	MFNFRQGFVLLLTVPAAAFAQGIDFNTRSFQGGPINEETVGQLKVKWVYQTVPDTG
Ga0307470_107214842	3300032174	Hardwood Forest Soil	MFSFRQGFVLLLLSVQAPVFAQGIDFNTRSFQGGPINEGSVGQLKVKWVYQTVPDT
Ga0307471_1001014911	3300032180	Hardwood Forest Soil	MFKAFALLLLAIQAPAFAQGIDFNTRSFQGGPINEGTVGQLTVKWVYQTAPDTGTESATV
Ga0326723_0553697_59_274	3300034090	Peat Soil	MFSFPLMKRWQGFALLLLTIQVPAFAQGIDFNTRSFQGGPINEATVGQLTVKWVYQTVPDTGTTSSAQGSV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098119

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences