Metagenome / Metatranscriptome Family F098104

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F098104
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	52 residues
Representative Sequence	MAELTPKYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL
Number of Associated Samples	85
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.31 %
% of genes near scaffold ends (potentially truncated)	36.54 %
% of genes from short scaffolds (< 2000 bps)	97.12 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (87.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (11.539 % of family members)
Environment Ontology (ENVO)	Unclassified (54.808 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.423 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.11% β-sheet: 5.56% Coil/Unstructured: 33.33%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01145	Band_7	21.15
PF12704	MacB_PCD	10.58
PF00392	GntR	0.96
PF08530	PepX_C	0.96
PF06537	DHOR	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2936	Predicted acyl esterase	General function prediction only [R]	0.96
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.50 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.50 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.50 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	41.35 %
Unclassified	root	N/A	12.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.38 %
Unclassified	root	N/A	12.50 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	3.85 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.42 %
Unclassified	root	N/A	12.50 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	3.85 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	1.92 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.42 %
Unclassified	root	N/A	12.50 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	3.85 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	1.92 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.42 %
Unclassified	root	N/A	12.50 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	3.85 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	1.92 %
Aromatoleum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.42 %
Unclassified	root	N/A	12.50 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3.85 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.92 %
Aromatoleum aromaticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum aromaticum	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_106315692	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300001305\|C688J14111_10082382	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300002568\|C688J35102_118050824	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300002568\|C688J35102_120050916	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300004081\|Ga0063454_101941559	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300004156\|Ga0062589_100177556	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300004479\|Ga0062595_101556328	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300004633\|Ga0066395_10613188	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300004643\|Ga0062591_100883885	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300005163\|Ga0066823_10099915	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005165\|Ga0066869_10015727	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300005169\|Ga0066810_10127137	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300005293\|Ga0065715_11064577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300005329\|Ga0070683_101243392	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300005329\|Ga0070683_101889469	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300005329\|Ga0070683_102143963	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005330\|Ga0070690_100562034	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300005331\|Ga0070670_100245998	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300005331\|Ga0070670_100460813	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300005331\|Ga0070670_102139197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300005335\|Ga0070666_10012953	All Organisms → cellular organisms → Bacteria	5278	Open in IMG/M
3300005338\|Ga0068868_102388419	Not Available	505	Open in IMG/M
3300005345\|Ga0070692_11224193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300005354\|Ga0070675_101324458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300005364\|Ga0070673_102209814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum aromaticum	523	Open in IMG/M
3300005434\|Ga0070709_11330955	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005458\|Ga0070681_12011858	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	506	Open in IMG/M
3300005526\|Ga0073909_10095676	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300005530\|Ga0070679_101461867	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300005535\|Ga0070684_100339438	All Organisms → cellular organisms → Bacteria → Acidobacteria	1381	Open in IMG/M
3300005539\|Ga0068853_101683692	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300005543\|Ga0070672_101430240	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300005563\|Ga0068855_101903259	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300005616\|Ga0068852_102689607	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005617\|Ga0068859_100948570	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300005618\|Ga0068864_102054477	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005719\|Ga0068861_101606670	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300005719\|Ga0068861_102711512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300005764\|Ga0066903_102123255	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300005764\|Ga0066903_105154523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300005764\|Ga0066903_106448805	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300005840\|Ga0068870_10203507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1202	Open in IMG/M
3300005842\|Ga0068858_100760243	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300005842\|Ga0068858_101461930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300005843\|Ga0068860_101801319	Not Available	634	Open in IMG/M
3300005844\|Ga0068862_101123687	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005844\|Ga0068862_102497756	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300006163\|Ga0070715_10665944	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300006163\|Ga0070715_10671140	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300006354\|Ga0075021_11073902	Not Available	526	Open in IMG/M
3300006580\|Ga0074049_11107022	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300006953\|Ga0074063_13825004	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300009177\|Ga0105248_11682687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300009177\|Ga0105248_11779154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	699	Open in IMG/M
3300009177\|Ga0105248_12518599	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300009545\|Ga0105237_11903345	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300012212\|Ga0150985_100814884	All Organisms → cellular organisms → Bacteria → Acidobacteria	1854	Open in IMG/M
3300012212\|Ga0150985_111217473	Not Available	541	Open in IMG/M
3300012212\|Ga0150985_112874744	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300012212\|Ga0150985_117861554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1367	Open in IMG/M
3300012469\|Ga0150984_100206624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300012924\|Ga0137413_11838596	Not Available	501	Open in IMG/M
3300012930\|Ga0137407_11956068	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300013306\|Ga0163162_12567306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300014969\|Ga0157376_10017206	All Organisms → cellular organisms → Bacteria	5508	Open in IMG/M
3300015199\|Ga0167647_1144742	Not Available	522	Open in IMG/M
3300015242\|Ga0137412_10237496	All Organisms → cellular organisms → Bacteria → Acidobacteria	1445	Open in IMG/M
3300015264\|Ga0137403_11381334	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300016294\|Ga0182041_10286118	Not Available	1359	Open in IMG/M
3300020034\|Ga0193753_10082711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1637	Open in IMG/M
3300021178\|Ga0210408_10729218	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300024288\|Ga0179589_10631254	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300025900\|Ga0207710_10012695	All Organisms → cellular organisms → Bacteria → Acidobacteria	3546	Open in IMG/M
3300025908\|Ga0207643_10224252	All Organisms → cellular organisms → Bacteria → Acidobacteria	1151	Open in IMG/M
3300025918\|Ga0207662_10464788	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	867	Open in IMG/M
3300025925\|Ga0207650_10185669	All Organisms → cellular organisms → Bacteria	1659	Open in IMG/M
3300025925\|Ga0207650_10473575	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300025925\|Ga0207650_10641364	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	895	Open in IMG/M
3300025940\|Ga0207691_10686816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	864	Open in IMG/M
3300025941\|Ga0207711_10999575	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300025944\|Ga0207661_10543636	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1064	Open in IMG/M
3300025944\|Ga0207661_10916727	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300025945\|Ga0207679_11135595	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300025986\|Ga0207658_11136219	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300026023\|Ga0207677_10412011	Not Available	1149	Open in IMG/M
3300026035\|Ga0207703_11834975	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300026041\|Ga0207639_12235790	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300026095\|Ga0207676_11640772	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300026142\|Ga0207698_11425464	All Organisms → cellular organisms → Bacteria → Acidobacteria	708	Open in IMG/M
3300027821\|Ga0209811_10075056	All Organisms → cellular organisms → Bacteria → Acidobacteria	1188	Open in IMG/M
3300027874\|Ga0209465_10367178	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	721	Open in IMG/M
3300027894\|Ga0209068_10646566	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	617	Open in IMG/M
3300028380\|Ga0268265_11621739	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300028768\|Ga0307280_10065713	Not Available	1159	Open in IMG/M
3300031170\|Ga0307498_10307930	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300031231\|Ga0170824_114154986	Not Available	503	Open in IMG/M
3300031366\|Ga0307506_10022077	All Organisms → cellular organisms → Bacteria → Acidobacteria	1597	Open in IMG/M
3300031544\|Ga0318534_10158269	Not Available	1308	Open in IMG/M
3300031561\|Ga0318528_10517383	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300031573\|Ga0310915_10718885	Not Available	705	Open in IMG/M
3300031682\|Ga0318560_10105828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1460	Open in IMG/M
3300031795\|Ga0318557_10260443	All Organisms → cellular organisms → Bacteria → Acidobacteria	795	Open in IMG/M
3300031897\|Ga0318520_10281352	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300032001\|Ga0306922_10465711	Not Available	1349	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.85%
Host-Associated	Host-Associated	46.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.92%
Plants	Host-Associated → Plants	46.15%
Aquatic	Environmental → Aquatic	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.19%
Sediment	Environmental → Aquatic → Sediment	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.81%
Loam	Environmental → Terrestrial → Soil → Loam	22.12%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	21.15%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	21.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.96%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	11.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015199	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2c, rock/snow interface)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1063156922	3300000955	Soil	MAELTPKYIDATNLRALAFLALVGAGAYVVVGGVPVVAGSLVIALVL
C688J14111_100823822	3300001305	Soil	MADMNPKYIDATNLRALAMLALVGGMAYVVVGGVPVVAGGLTVAAALALYHRAL*
C688J35102_1180508242	3300002568	Soil	DVMAELTPKYIDATNLRALAFLALVGAGAYIVVGGVPVVAGSLVVALVLTVYHHAL*
C688J35102_1200509162	3300002568	Soil	MAELTPKYIDATNLRALAFLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAL*
Ga0063454_1019415592	3300004081	Soil	MAELTPKYIDATNLRALAFLALVGAGAYIVVGGVPVVAGSLVVALVLTVYHHAL*
Ga0062589_1001775562	3300004156	Soil	MSEISPKYIDATNLKALAMLAFVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0062595_1015563282	3300004479	Soil	KALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0066395_106131881	3300004633	Tropical Forest Soil	MAELTPKYIDTTNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAM*
Ga0062591_1008838852	3300004643	Soil	MTDISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAVLAIYHHGL*
Ga0066823_100999152	3300005163	Soil	MAELTPKYIDVTNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0066869_100157272	3300005165	Soil	MAQLTPKYIDATNLKALAVLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0066810_101271372	3300005169	Soil	PKYIDATNLKALAVLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0065715_110645772	3300005293	Miscanthus Rhizosphere	MTDISPKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLAVAMALTIYHHAV*
Ga0070683_1012433922	3300005329	Corn Rhizosphere	MSEISPKYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLLVALVLTVYHHAL*
Ga0070683_1018894691	3300005329	Corn Rhizosphere	KYIDATNLKALAMLAFVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0070683_1021439632	3300005329	Corn Rhizosphere	MAEITPRYIDATNLKALAMLALVGAGAYIVVGGVPVVAGSLVVALVLTVYHHAM*
Ga0070690_1005620342	3300005330	Switchgrass Rhizosphere	ALAMLALVGAGAYIVVGGVPVVAGSLVVALVLTVYHHAL*
Ga0070670_1002459982	3300005331	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLTVAAALAIYHHTV*
Ga0070670_1004608132	3300005331	Switchgrass Rhizosphere	MAELTPKYIDATNLKALAMLALVGAGAYVVVGGLPVVTGSLVVALVLAVYHRAL*
Ga0070670_1021391972	3300005331	Switchgrass Rhizosphere	ISPKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLAVAMALTIYHHAV*
Ga0070666_100129532	3300005335	Switchgrass Rhizosphere	MTELTPKYVDLTNLKALAMLALVGAGAYIVVGGVPVVAGSLVVALVLTVYHHAL*
Ga0068868_1023884191	3300005338	Miscanthus Rhizosphere	MAELTPKYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0070692_112241931	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	ATNLKALAMLAVVGGLAYVVVGGVPVVAGGLAVAMALTIYHHAV*
Ga0070675_1013244581	3300005354	Miscanthus Rhizosphere	TNLKALAMLAVVGGLAYVVVGGVPVVAGGLAVAMALTIYHHAV*
Ga0070673_1022098141	3300005364	Switchgrass Rhizosphere	MAELTPKYIDATNLKALAMLALVGAGAYVVVGGVPVVVGGLAVAAALAIYHHTL*
Ga0070709_113309552	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAELTPKYIDATNLKALAMLALVGAGAYIVVGGVPVVAGSLVVALVLTVYHHAL*
Ga0070681_120118581	3300005458	Corn Rhizosphere	MNAHYVDATNLKALAMLAFVGALAYVVVGGVPVVAGGLAVAAALTIYHHAL*
Ga0073909_100956762	3300005526	Surface Soil	MAELTPKYIDATNLKALAMLALVGAGAYIVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0070679_1014618673	3300005530	Corn Rhizosphere	TNLKALAMLAFVGALAYVVVGGVPVVAGGLAVAAALTIYHHAL*
Ga0070684_1003394382	3300005535	Corn Rhizosphere	PKYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLLVALVLTVYHHAL*
Ga0068853_1016836922	3300005539	Corn Rhizosphere	MAELTPKYIDATNLRALAMLALVGAGAYIVVGGLPVVAGSLVIALVLTVYHHAL*
Ga0070672_1014302402	3300005543	Miscanthus Rhizosphere	MSEISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAALTIYHHAL*
Ga0068855_1019032592	3300005563	Corn Rhizosphere	KALAFLALVGAGAYIVVGGVPVVAGGLLVALVLTVYHHAL*
Ga0068852_1026896072	3300005616	Corn Rhizosphere	MTEISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVA
Ga0068859_1009485702	3300005617	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLAVAMALTIYHHAV*
Ga0068864_1020544772	3300005618	Switchgrass Rhizosphere	MAELTPKYIDATNLKALAMLALVGAVAYVVVGGLPVVTGSLVVALVLAVYHRAL*
Ga0068861_1016066702	3300005719	Switchgrass Rhizosphere	MTEISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAALTIYHHAL*
Ga0068861_1027115122	3300005719	Switchgrass Rhizosphere	KALAMLAVVGGLAYVVVGGVPVVAGGLTVAAALAIYHHTV*
Ga0066903_1021232552	3300005764	Tropical Forest Soil	MAELTPKYIDATNLRALAMLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAL*
Ga0066903_1051545232	3300005764	Tropical Forest Soil	MAELTPKYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAM*
Ga0066903_1064488052	3300005764	Tropical Forest Soil	MAELTPKYIDATNLKALAMLALVGAGAYVVVGGLPVVSGSLVVALVLIVYHHAV*
Ga0068870_102035072	3300005840	Miscanthus Rhizosphere	PKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLAVAMALTIYHHAV*
Ga0068858_1007602432	3300005842	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAALAIYHHTV*
Ga0068858_1014619301	3300005842	Switchgrass Rhizosphere	AEDREDIMAELTPKYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAV*
Ga0068860_1018013191	3300005843	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAVLAIYHHGL*
Ga0068862_1011236872	3300005844	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLAVAAALTIYHHAV*
Ga0068862_1024977562	3300005844	Switchgrass Rhizosphere	NLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAVLAIYHHGL*
Ga0070715_106659441	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MAELTPKYIDATNLKALAMLAVVGALAYIVVGGIPVVAGGLAVAAALTIYHHAL*
Ga0070715_106711402	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MAEVTPKYIDATNLKALAMLALVGAGAYIVVGGVPVVAGSLVVALVLTVYHHAL*
Ga0075021_110739021	3300006354	Watersheds	LRALAMLACVGALAYVVVGGIPVVAGGLAIAAALTIYHHAL*
Ga0074049_111070222	3300006580	Soil	KEDGMAELTPKYIDVTNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0074063_138250042	3300006953	Soil	MAELTPKYLDATNLKALAMLALVGAGAYVVVGGLPLVAGSLMVALVLTVYHHAL*
Ga0105248_116826871	3300009177	Switchgrass Rhizosphere	KEDGMAELTPKYIDATNLKALAMLALVGAGAYVVVGGVPVVVGGLAVAAALAIYHHAL*
Ga0105248_117791541	3300009177	Switchgrass Rhizosphere	DISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLEVEAALTIYHHAL*
Ga0105248_125185993	3300009177	Switchgrass Rhizosphere	MAEMTPKYVDATNLKALAMLALVGALAYVVVGGIPVVAGGLAVAAALTIYHHAL*
Ga0105237_119033451	3300009545	Corn Rhizosphere	MTELTPKYVDLTNLKALAMLALVGAGAYIVVGGVPVVAVSLVVALALTVYHHAL*
Ga0150985_1008148843	3300012212	Avena Fatua Rhizosphere	VERQTIKEDVMAELTPKYIDATNLRALAFLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAL*
Ga0150985_1112174731	3300012212	Avena Fatua Rhizosphere	MASITPKYIDATNLRALAFLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAV
Ga0150985_1128747442	3300012212	Avena Fatua Rhizosphere	MPQVSSHYIDATNLKALAFLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAL*
Ga0150985_1178615541	3300012212	Avena Fatua Rhizosphere	MADMNPKYIDATNLRALAMLALVGGMAYVVVGGVPVVAGGLTVATALALYHRAL*
Ga0150984_1002066241	3300012469	Avena Fatua Rhizosphere	DMNPKYIDATNLRALAMLALVGGMAYVVVGGVPVVAGGLTVAAALALYHRAL*
Ga0137413_118385962	3300012924	Vadose Zone Soil	MAEMTPTYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHGL*
Ga0137407_119560681	3300012930	Vadose Zone Soil	YIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHGL*
Ga0163162_125673061	3300013306	Switchgrass Rhizosphere	SEISPKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLTVAAALAIYHHTV*
Ga0157376_100172061	3300014969	Miscanthus Rhizosphere	MTPKYIDATNLKALAMLALVGAGAYIVVGGLPVVAGSLVVALVLTVYHHAL*
Ga0167647_11447421	3300015199	Glacier Forefield Soil	MATVTPKYLDATNLKALAFLAFVGAMAYLVVGGIPVVAGGLIVALVLTVYHHAL*
Ga0137412_102374961	3300015242	Vadose Zone Soil	MAEMTPTYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVY
Ga0137403_113813341	3300015264	Vadose Zone Soil	NRKEDGMAEMTPTYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHGL
Ga0182041_102861183	3300016294	Soil	ATNLRALAMLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAL
Ga0193753_100827113	3300020034	Soil	MAEITPKYIDTTNLKALAMLAFVGAMAYVVVGGLPVVAGSLFVALVLTVYHHAL
Ga0210408_107292182	3300021178	Soil	MAELTPKYIDATNLKALAMLALVGAGAYIVVGGVPVVAGSLVVALVLTVYHHAL
Ga0179589_106312541	3300024288	Vadose Zone Soil	MTPTYIDATNLKALAMLALVCAGAYVVVGGLPVVAGSLVVALVLTVYHHGL
Ga0207710_100126955	3300025900	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLAFVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL
Ga0207643_102242522	3300025908	Miscanthus Rhizosphere	MSEISPKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLAVAMALTIYHHAV
Ga0207662_104647882	3300025918	Switchgrass Rhizosphere	MTEISPRYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAVLTIYHHAL
Ga0207650_101856693	3300025925	Switchgrass Rhizosphere	MTDISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAVLAIYHHGL
Ga0207650_104735752	3300025925	Switchgrass Rhizosphere	MAELTPKYIDATNLKALAMLALVGAGAYVVVGGLPVVTGSLVVALVLAVYHRAL
Ga0207650_106413642	3300025925	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLAVAAALTIYHHAV
Ga0207691_106868162	3300025940	Miscanthus Rhizosphere	MTEISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAALTIYHHAL
Ga0207711_109995753	3300025941	Switchgrass Rhizosphere	MAEMTPKYVDATNLKALAMLALVGALAYVVVGGIPVVAGGLAVAAALTIYHHAL
Ga0207661_105436362	3300025944	Corn Rhizosphere	MAEITPRYIDATNLKALAMLALVGAGAYIVVGGVPVVAGSLVVALVLTVYHHAM
Ga0207661_109167272	3300025944	Corn Rhizosphere	MSEISPKYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAV
Ga0207679_111355952	3300025945	Corn Rhizosphere	MSEVSPKYIDATNLKALAMLALVGAGAYGVVGGVPVVAGGLAVAAVLAIYHHGL
Ga0207658_111362192	3300025986	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLAVVGGLAYVVVGGVPVVAGGLTVAAALAIYHHTV
Ga0207677_104120112	3300026023	Miscanthus Rhizosphere	MSEISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAVLAIYHHGL
Ga0207703_118349752	3300026035	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAALAIYHHTV
Ga0207639_122357902	3300026041	Corn Rhizosphere	EDGMAELTPKYIDATNLRALAMLALVGAGAYIVVGGLPVVAGSLVIALVLTVYHHAL
Ga0207676_116407722	3300026095	Switchgrass Rhizosphere	MAEISPKYIDATNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL
Ga0207698_114254642	3300026142	Corn Rhizosphere	MAELTPKYIDATNLRALAMLALVGAGAYIVVGGLPVVAGSLVIALVLTVYHHAL
Ga0209811_100750562	3300027821	Surface Soil	MAELTPKYIDATNLKALAMLALVGAGAYIVVGGLPVVAGSLVVALVLTVYHHAL
Ga0209465_103671782	3300027874	Tropical Forest Soil	MAELTPKYIDTTNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAM
Ga0209068_106465661	3300027894	Watersheds	KYIDATNLRALAMLACVGALAYVVVGGIPVVAGGLAIAAALTIYHHAL
Ga0268265_116217391	3300028380	Switchgrass Rhizosphere	MSEISPKYIDATNLKALAMLALVGAGAYVVVGGVPVVAGGLAVAAALTIYHHAV
Ga0307280_100657132	3300028768	Soil	MAELTPKYIDATNLKALAMLALVGAGAYLVVGGLPVAAGSLVVALVLTVYHQGL
Ga0307498_103079302	3300031170	Soil	MAELTPKYIDTTNLKALAMLALVGAGAYVVVGGLPVVAGSLVVALVLTVYHHAL
Ga0170824_1141549862	3300031231	Forest Soil	MAELTPKYIDATNLKALAMLALVGAGAYVVVGGLPLVAGGLVIALALTVYHHAL
Ga0307506_100220772	3300031366	Soil	MAELTPKYIDATNLRALAFLALVGAGAYVVVGGVPVVAGGLAVAAALTIYHHAL
Ga0318534_101582692	3300031544	Soil	MAELTPKYIDATNLRALAMLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAL
Ga0318528_105173832	3300031561	Soil	MAELTPKYIDATNLRALAMLALVGAGAYVVVGGVPVVAGSLVVALVLTVYH
Ga0310915_107188852	3300031573	Soil	LRALAMLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAL
Ga0318560_101058281	3300031682	Soil	MAELTPKYIDATNLRALAMLALVGAGAYVDVGGVPVVAGSLVVALVLTVYHHAL
Ga0318557_102604431	3300031795	Soil	ALAMLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAL
Ga0318520_102813522	3300031897	Soil	MAELTPKYIDATNLRAFAMLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHHAL
Ga0306922_104657111	3300032001	Soil	MAELTPKYIDATNLRALAMLALVGAGAYVVVGGVPVVAGSLVVALVLTVYHYAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098104

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences