Metagenome / Metatranscriptome Family F098098

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098098
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	67 residues
Representative Sequence	MANILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Number of Associated Samples	86
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.85 %
% of genes near scaffold ends (potentially truncated)	40.38 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.462 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (52.885 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.308 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 83.33% β-sheet: 0.00% Coil/Unstructured: 16.67%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF07022	Phage_CI_repr	15.38
PF14279	HNH_5	4.81
PF01844	HNH	3.85
PF13671	AAA_33	2.88
PF00005	ABC_tran	1.92
PF03401	TctC	0.96
PF07394	DUF1501	0.96
PF00881	Nitroreductase	0.96
PF01381	HTH_3	0.96
PF01515	PTA_PTB	0.96
PF08220	HTH_DeoR	0.96
PF01814	Hemerythrin	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0280	Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase)	Energy production and conversion [C]	0.96
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.46 %
Unclassified	root	N/A	11.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.46 %
Unclassified	root	N/A	11.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.46 %
Unclassified	root	N/A	11.54 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.69 %
Unclassified	root	N/A	11.54 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	72.12 %
Unclassified	root	N/A	11.54 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	15.38 %
Unclassified	root	N/A	11.54 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.96 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	15.38 %
Unclassified	root	N/A	11.54 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.96 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	15.38 %
Unclassified	root	N/A	11.54 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.96 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	15.38 %
Unclassified	root	N/A	11.54 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.96 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004479\|Ga0062595_100985242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	722	Open in IMG/M
3300005328\|Ga0070676_10523776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	845	Open in IMG/M
3300005331\|Ga0070670_100493150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1089	Open in IMG/M
3300005332\|Ga0066388_102129209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1010	Open in IMG/M
3300005338\|Ga0068868_100548178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1019	Open in IMG/M
3300005339\|Ga0070660_100769756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	809	Open in IMG/M
3300005353\|Ga0070669_100994043	Not Available	719	Open in IMG/M
3300005354\|Ga0070675_100428946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1183	Open in IMG/M
3300005354\|Ga0070675_100724262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	907	Open in IMG/M
3300005356\|Ga0070674_100397604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1125	Open in IMG/M
3300005364\|Ga0070673_102395009	Not Available	502	Open in IMG/M
3300005366\|Ga0070659_101360745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	630	Open in IMG/M
3300005367\|Ga0070667_100346874	All Organisms → cellular organisms → Bacteria → Proteobacteria	1343	Open in IMG/M
3300005367\|Ga0070667_100642107	Not Available	980	Open in IMG/M
3300005438\|Ga0070701_11361008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	509	Open in IMG/M
3300005441\|Ga0070700_100625005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	847	Open in IMG/M
3300005459\|Ga0068867_100840043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	822	Open in IMG/M
3300005535\|Ga0070684_101886359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	564	Open in IMG/M
3300005543\|Ga0070672_100442531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1119	Open in IMG/M
3300005548\|Ga0070665_100494288	All Organisms → cellular organisms → Bacteria → Proteobacteria	1234	Open in IMG/M
3300005616\|Ga0068852_100088725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2762	Open in IMG/M
3300005616\|Ga0068852_100967975	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M
3300005618\|Ga0068864_101755298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	626	Open in IMG/M
3300005719\|Ga0068861_100233835	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300005834\|Ga0068851_11115233	Not Available	501	Open in IMG/M
3300005840\|Ga0068870_10439223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	858	Open in IMG/M
3300005840\|Ga0068870_11201624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	549	Open in IMG/M
3300005841\|Ga0068863_100136144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2347	Open in IMG/M
3300005841\|Ga0068863_100285237	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300005841\|Ga0068863_101169970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	774	Open in IMG/M
3300005841\|Ga0068863_102086092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	577	Open in IMG/M
3300005842\|Ga0068858_100079939	Not Available	3038	Open in IMG/M
3300006056\|Ga0075163_10308586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1797	Open in IMG/M
3300006163\|Ga0070715_10810058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	569	Open in IMG/M
3300006237\|Ga0097621_102011486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	552	Open in IMG/M
3300006755\|Ga0079222_11367526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	652	Open in IMG/M
3300006844\|Ga0075428_101625444	Not Available	675	Open in IMG/M
3300006854\|Ga0075425_100108481	All Organisms → cellular organisms → Bacteria	3163	Open in IMG/M
3300007253\|Ga0075182_11144538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	568	Open in IMG/M
3300009094\|Ga0111539_11713680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	729	Open in IMG/M
3300009553\|Ga0105249_11506152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	745	Open in IMG/M
3300009840\|Ga0126313_11208732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	623	Open in IMG/M
3300009868\|Ga0130016_10001735	All Organisms → cellular organisms → Bacteria → Proteobacteria	44860	Open in IMG/M
3300009870\|Ga0131092_10190851	All Organisms → cellular organisms → Bacteria → Proteobacteria	2161	Open in IMG/M
3300009870\|Ga0131092_10569684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	997	Open in IMG/M
3300009870\|Ga0131092_10792043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	793	Open in IMG/M
3300010051\|Ga0133939_1002979	All Organisms → cellular organisms → Bacteria → Proteobacteria	160319	Open in IMG/M
3300012212\|Ga0150985_109998958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	732	Open in IMG/M
3300012469\|Ga0150984_116713212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	875	Open in IMG/M
3300012533\|Ga0138256_10367820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1200	Open in IMG/M
3300012900\|Ga0157292_10046152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1156	Open in IMG/M
3300012910\|Ga0157308_10257956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	619	Open in IMG/M
3300012943\|Ga0164241_10960313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	626	Open in IMG/M
3300014325\|Ga0163163_10182996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2143	Open in IMG/M
3300014968\|Ga0157379_10404447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1255	Open in IMG/M
3300014968\|Ga0157379_10792434	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300014969\|Ga0157376_12774282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	530	Open in IMG/M
3300015371\|Ga0132258_11866608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1513	Open in IMG/M
3300015373\|Ga0132257_100990599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1057	Open in IMG/M
3300015373\|Ga0132257_101381754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	896	Open in IMG/M
3300017947\|Ga0187785_10789461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	504	Open in IMG/M
3300017959\|Ga0187779_10148855	Not Available	1442	Open in IMG/M
3300017961\|Ga0187778_10598802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	739	Open in IMG/M
3300017965\|Ga0190266_10178976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	989	Open in IMG/M
3300018469\|Ga0190270_10291095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1449	Open in IMG/M
3300018476\|Ga0190274_10215944	All Organisms → cellular organisms → Bacteria → Proteobacteria	1703	Open in IMG/M
3300018476\|Ga0190274_10470349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1246	Open in IMG/M
3300018476\|Ga0190274_11716014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	722	Open in IMG/M
3300018481\|Ga0190271_10447654	All Organisms → cellular organisms → Bacteria → Proteobacteria	1395	Open in IMG/M
3300018481\|Ga0190271_10568372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1251	Open in IMG/M
3300018920\|Ga0190273_11465223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	601	Open in IMG/M
(restricted) 3300021517\|Ga0224723_1024990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2382	Open in IMG/M
3300023269\|Ga0247773_1258193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	514	Open in IMG/M
3300025321\|Ga0207656_10090387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1389	Open in IMG/M
3300025903\|Ga0207680_10676847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	739	Open in IMG/M
3300025907\|Ga0207645_10102644	All Organisms → cellular organisms → Bacteria → Proteobacteria	1846	Open in IMG/M
3300025908\|Ga0207643_10394341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	874	Open in IMG/M
3300025908\|Ga0207643_10424957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	843	Open in IMG/M
3300025926\|Ga0207659_10051945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2918	Open in IMG/M
3300025937\|Ga0207669_10153832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1615	Open in IMG/M
3300025940\|Ga0207691_10791925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	797	Open in IMG/M
3300025940\|Ga0207691_10977889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	707	Open in IMG/M
3300026023\|Ga0207677_10596212	Not Available	969	Open in IMG/M
3300026088\|Ga0207641_10052844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3442	Open in IMG/M
3300026088\|Ga0207641_10575594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1100	Open in IMG/M
3300026088\|Ga0207641_10876040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	891	Open in IMG/M
3300026118\|Ga0207675_100489113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1224	Open in IMG/M
3300026121\|Ga0207683_10703987	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	936	Open in IMG/M
3300026142\|Ga0207698_10919940	Not Available	882	Open in IMG/M
3300028381\|Ga0268264_11965191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	594	Open in IMG/M
3300028802\|Ga0307503_10944795	Not Available	502	Open in IMG/M
3300030905\|Ga0308200_1180912	Not Available	504	Open in IMG/M
3300031854\|Ga0310904_10123632	All Organisms → cellular organisms → Bacteria → Proteobacteria	1463	Open in IMG/M
3300031938\|Ga0308175_100961589	All Organisms → cellular organisms → Bacteria → Proteobacteria	942	Open in IMG/M
3300031939\|Ga0308174_10192201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1551	Open in IMG/M
3300031996\|Ga0308176_11783787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	657	Open in IMG/M
3300032002\|Ga0307416_102750874	Not Available	588	Open in IMG/M
3300032074\|Ga0308173_10047519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3106	Open in IMG/M
3300032075\|Ga0310890_10183235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1420	Open in IMG/M
3300032782\|Ga0335082_10044387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4639	Open in IMG/M
3300032829\|Ga0335070_10249933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1739	Open in IMG/M
3300032955\|Ga0335076_11020750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	710	Open in IMG/M
3300034664\|Ga0314786_156708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	537	Open in IMG/M
3300034673\|Ga0314798_088665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	639	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.73%
Environmental	Environmental	35.58%
Engineered	Engineered	7.69%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.73%
Terrestrial	Environmental → Terrestrial	34.62%
Wastewater	Engineered → Wastewater	7.69%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	33.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	27.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.92%
Activated Sludge	Engineered → Wastewater → Activated Sludge	4.81%
Roots	Host-Associated → Plants → Roots	1.92%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.96%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	23.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.77%
Loam	Environmental → Terrestrial → Soil → Loam	4.81%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.92%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified	1.92%
Lake	Environmental → Aquatic → Freshwater → Lake	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	23.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.46%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.77%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.92%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	11.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.92%
Wastewater Effluent	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.96%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.96%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Industrial Wastewater	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006056	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNA	Engineered	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007253	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 A1 RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300009868	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant	Engineered	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010051	Industrial wastewater microbial communities from reactors of effluent treatment plant in South Killingholme, Immingham, England. Combined Assembly of Gp0151195, Gp0151196	Engineered	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012533	Active sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MG	Engineered	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300021517 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR2_MetaG	Environmental	Open in IMG/M
3300023269	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L092-311B-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034673	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062595_1009852422	3300004479	Soil	MASILEELRRPYGREHWDLIKAGREGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAV
Ga0070676_105237762	3300005328	Miscanthus Rhizosphere	MASILEELRRPYGREHWDLIKAGRDGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAIQYASGK*
Ga0070670_1004931501	3300005331	Switchgrass Rhizosphere	MANILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0066388_1021292091	3300005332	Tropical Forest Soil	MANSLLEELRRPYGREHWQLIKGGREGTYWQAADGLIVRLAVAECVHQADGVVRVARHLLELAVQYASGR*
Ga0068868_1005481781	3300005338	Miscanthus Rhizosphere	MARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVAR
Ga0070660_1007697561	3300005339	Corn Rhizosphere	MARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQY
Ga0070669_1009940431	3300005353	Switchgrass Rhizosphere	MANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHETDVVARHLLELAVQY
Ga0070675_1004289464	3300005354	Miscanthus Rhizosphere	MASNGLGILEELRRPYGREHWDLVKSSKDGAYWQKADGLIVRLAVAESVHQADSLGRLLLDLAVQYA
Ga0070675_1007242622	3300005354	Miscanthus Rhizosphere	RHKMASILEELRRPYGREHWDLIKAGRDGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAIQYASGK*
Ga0070674_1003976044	3300005356	Miscanthus Rhizosphere	MANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYAAGR*
Ga0070673_1023950092	3300005364	Switchgrass Rhizosphere	MANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHETDVVARHL
Ga0070659_1013607452	3300005366	Corn Rhizosphere	LLPEVTTIDGYEAHKMARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0070667_1003468741	3300005367	Switchgrass Rhizosphere	MARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0070667_1006421071	3300005367	Switchgrass Rhizosphere	MASGNFSLLERLRRPYGREHWQLIKSGREGSYWQAADGLIVRLAVAETVHQADSVART
Ga0070701_113610082	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLAVAEAVHQADHVGRVLLDLAIQYAAGK*
Ga0070700_1006250053	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MASILEELRRPYGREHWDLIKAGRDGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAIQYASG
Ga0068867_1008400432	3300005459	Miscanthus Rhizosphere	MANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHETDVVARHLLELAVQYAAGR*
Ga0070684_1018863591	3300005535	Corn Rhizosphere	DGNEAHEMASILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0070672_1004425312	3300005543	Miscanthus Rhizosphere	LPEVTTIDGYEAHKMARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0070665_1004942882	3300005548	Switchgrass Rhizosphere	MASSLGLLEELRRPHGREHWELIKSGRDGSYWQAADGLIVRLAVAEAVHQADHVGRVLLDLAIQYAVGK*
Ga0068852_1000887255	3300005616	Corn Rhizosphere	MATIIERLRRPCGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0068852_1009679752	3300005616	Corn Rhizosphere	GREYWELIRSGKEGSYWQAADGLIVRLCVAEAAYETDVVARHLLELAVQYAAGR*
Ga0068864_1017552982	3300005618	Switchgrass Rhizosphere	MASGNLSLLERLRRPYGREHWQLIRSGREGSYWQAADGLIMRLAVAETVHQADSVARTLLELAVQYASGR*
Ga0068861_1002338352	3300005719	Switchgrass Rhizosphere	MASGNLGLLERLRRPYGREHWQLIRSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASGR*
Ga0068851_111152331	3300005834	Corn Rhizosphere	GREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0068870_104392232	3300005840	Miscanthus Rhizosphere	LPVVTTNDGNEAHKMASILEELRRPYGREHWDLIKAGRDGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAIQYASGK*
Ga0068870_112016241	3300005840	Miscanthus Rhizosphere	LPAVTTIDGYEAHKMARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0068863_1001361443	3300005841	Switchgrass Rhizosphere	EELRRPYGREHWDLIKAGREGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAVQYASGR*
Ga0068863_1002852373	3300005841	Switchgrass Rhizosphere	MASGNLSLLERLRRPYGREHWQLIRSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASGR*
Ga0068863_1011699703	3300005841	Switchgrass Rhizosphere	MASGNFSLLERLRRPYGREHWQLIKSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASG
Ga0068863_1020860921	3300005841	Switchgrass Rhizosphere	LPEVTTIDGYEAHKMARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQY
Ga0068858_1000799392	3300005842	Switchgrass Rhizosphere	MASGNFSLLERLRRPYGREHWQLIKSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASGR*
Ga0075163_103085864	3300006056	Wastewater Effluent	MASNGLGILEELRRPYGREHWELIKAGREGSYWQAADGLIVRLAVAEAVHQADNVGRLLLDLAVQYAAGK*
Ga0070715_108100582	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MASGNLSLLERLRRPYGREHWQLIKSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASGR*
Ga0097621_1020114862	3300006237	Miscanthus Rhizosphere	LPVVTIIDGNEAHKMANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAYETDVVARHLLELAVQYAAGR*
Ga0079222_113675261	3300006755	Agricultural Soil	MASILERLRRPYGREYWELIRSGREGSYWQAADGLVIRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0075428_1016254443	3300006844	Populus Rhizosphere	LPVVTTIDGNEAHEMANILERLRRPYGREYWELIRSGKEGSYWQAADGLVIRLCVAEAAHEADVVARHLL
Ga0075425_1001084814	3300006854	Populus Rhizosphere	MAGILLEQLRRPYGREHWQMIKAGQEGTYWQAADGLVVRLAVAECVHQADGVARALLELAVQYASGR*
Ga0075182_111445381	3300007253	Wastewater Effluent	GILEELRRPYGREHWQLIKAGREGSYWQAADGLIVRLAVAESVHQADNVGRLLLDLAVQYATGK*
Ga0111539_117136801	3300009094	Populus Rhizosphere	RLRRPYGREYWELIRSGKEGSYWQAAEGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0105249_115061521	3300009553	Switchgrass Rhizosphere	MANILERIRRPYGREYWELIRSGREGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0126313_112087321	3300009840	Serpentine Soil	MAPILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0130016_1000173510	3300009868	Wastewater	MLPAVITNDGNEAQEMARNGLGVLDELRRPYGREHWGLVKAGREGSYWQAADGLIVRLAVAESVHQADNVGRLLLDLAVQYAGGK*
Ga0131092_101908512	3300009870	Activated Sludge	MARNGSGVLDELRRPYGREHWGLVKAGREGSYWQAADGLIVRLAVAESVHQADNLGRLLLDLAVQYAGGK*
Ga0131092_105696841	3300009870	Activated Sludge	MAGIIERLRRPYGREYWDLIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0131092_107920431	3300009870	Activated Sludge	MAGILEELRRPYGREHWELIKSGREGSYWQAADGLIVRLAVAECVHQADNVAGVARALLDLAVQYASGK*
Ga0133939_1002979116	3300010051	Industrial Wastewater	MASNGLGILDELRRPYGREHWELVKAGREGSYWQAADGLIVRLAVAESVHQADNLGRLLLDLAVQYAAGK*
Ga0150985_1099989582	3300012212	Avena Fatua Rhizosphere	MASGNLLEKLRRPYGREYWQLIRSGAEGSYWQAADGLIVRLAVAETVREADGVARTLLELAV
Ga0150984_1167132121	3300012469	Avena Fatua Rhizosphere	MASGNLLEKLRRPYGREYWQLIRSGAEGSYWQATDGLIVRLAVAETVREADGVARTLLELAVQYALGK*
Ga0138256_103678201	3300012533	Active Sludge	MASNGLGLLEGLRRPYGREHWELVKAGREGSYWQAADGLIVRLAIAESVHQADNLGRLLLDLAVQYAAGK*
Ga0157292_100461521	3300012900	Soil	MLPAVTIIDGNEAHEMASNGLGILEELRRPYGREHWELVKSSRDGSYWQAADGLIVRLAVAES
Ga0157308_102579562	3300012910	Soil	MLPAVPFIDGKEAHEMASNGLGILEELRRPYGREHWELVKSSRDGSYWQAADGLIVRLAVAESVHQADSLGRLLLDLAVQYAAGK*
Ga0164241_109603131	3300012943	Soil	MASNGLGILEELRRPYGREHWELVKSSREGSYWQAADGLIVRLAVAESVHQADSLGRLLLDLAVQYAAGK*
Ga0163163_101829962	3300014325	Switchgrass Rhizosphere	MASGNFSLLEKLRRPYGREHWQLIKSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASGT*
Ga0157379_104044474	3300014968	Switchgrass Rhizosphere	MASILEELRRPYGREHWDLIKAGREGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAIQYASGK*
Ga0157379_107924341	3300014968	Switchgrass Rhizosphere	LLERLRRPYGREHWQLIRSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASGR*
Ga0157376_127742821	3300014969	Miscanthus Rhizosphere	ERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR*
Ga0132258_118666084	3300015371	Arabidopsis Rhizosphere	MASIVERLRRPYGREYWELVRSGKEGSYWQAADGLLVRLCVAEAAHEADAAARHLLELAVQYASGR*
Ga0132257_1009905991	3300015373	Arabidopsis Rhizosphere	MANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLEL
Ga0132257_1013817541	3300015373	Arabidopsis Rhizosphere	MASIVERLRRPYGREYWELVRSGKEGSYWQAADGIIVRLCVAEAVHESDAVARHLLELAVQYASGR*
Ga0187785_107894611	3300017947	Tropical Peatland	LPVVTTIDGNEAHKMADILERLRRPYGREYWELIRSGREGSYWQAADGLIVRLAVAETVHEADHVARVLLKLAVKYAAGG
Ga0187779_101488552	3300017959	Tropical Peatland	MADILERLRRPYGREYWELIRSGRAGSYWQAADGLIVRLAVAETVREADHVARVLLKLAVKYAAGG
Ga0187778_105988021	3300017961	Tropical Peatland	MADILERLRRPYGREYWELIRSGREGSYWQAADGLIVRLAVAETVREADHVARVLLKLAVKYAAGG
Ga0190266_101789761	3300017965	Soil	MASILERIRAPYGREYWELIRSGRDGSYWQAADGIIVRLCVAESVREVDGVARGLLELAVQYASGK
Ga0190270_102910952	3300018469	Soil	MANILERIRRPYGREYWELIRSGKEGSYWQAADGIIVRLCVAEVVYEADVVGRKLLELAIQYAAGR
Ga0190274_102159443	3300018476	Soil	MASILEELRRPYGREHWDLIKAGREGSYWQRADGLIVRLAVAETVHQADGVARVLLDLAIQYASGR
Ga0190274_104703494	3300018476	Soil	MASNGLGILEELRRPYGREHWDLVKSSKDGAYWQKADGLIVRLAVAESVHQADSLGRLLLDLAVQYAAGK
Ga0190274_117160142	3300018476	Soil	MASILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARRLLELAVQYASGR
Ga0190271_104476542	3300018481	Soil	MASNGLGLLEELRRPYGREHWELVKSSRDGAYWQKADGLIVRLAVAESVHQADSLGRLLLDLAVQYAAGK
Ga0190271_105683723	3300018481	Soil	MIDGYEAHKMAHLMETLRRPCGREYWELIRSGKDGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0190273_114652231	3300018920	Soil	GILEELRRPYGREHWELVKSSRDGSYWQKADGLIVRLAVAESVHQADSLGRLLLDLAVQYAAGK
(restricted) Ga0224723_10249902	3300021517	Freshwater Sediment	MASILARLRRPHGREHWELIRSGREGSYWQATDGLIVRLSVAETVHESDRAARALLELAVQYASGR
Ga0247773_12581931	3300023269	Plant Litter	LPEVTTIDGYEAHKMARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0207656_100903874	3300025321	Corn Rhizosphere	MARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0207680_106768472	3300025903	Switchgrass Rhizosphere	FLLPEVTTIDGYEAHKMARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0207645_101026443	3300025907	Miscanthus Rhizosphere	MANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0207643_103943411	3300025908	Miscanthus Rhizosphere	MASILEELRRPYGREHWDLIKAGRDGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAIQYASGK
Ga0207643_104249571	3300025908	Miscanthus Rhizosphere	LPAVTTIDGYEAHKMARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0207659_100519452	3300025926	Miscanthus Rhizosphere	MANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHETDVVARHLLELAVQYAAGR
Ga0207669_101538321	3300025937	Miscanthus Rhizosphere	MANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAYETDVVARHLLELAVQYAAGR
Ga0207691_107919251	3300025940	Miscanthus Rhizosphere	MASNGLGILEELRRPYGREHWELVKSSRDGSYWQAADGLIVRLAVAESVHQADSLGRLLLDLAVQYAAGK
Ga0207691_109778891	3300025940	Miscanthus Rhizosphere	LPEVTTIDGHEAHKMARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0207677_105962121	3300026023	Miscanthus Rhizosphere	MARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHL
Ga0207641_100528442	3300026088	Switchgrass Rhizosphere	MASILEELRRPYGREHWDLIKAGREGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAVQYASGR
Ga0207641_105755941	3300026088	Switchgrass Rhizosphere	MASGNLSLLERLRRPYGREHWQLIRSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASGR
Ga0207641_108760401	3300026088	Switchgrass Rhizosphere	MARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAV
Ga0207675_1004891132	3300026118	Switchgrass Rhizosphere	MASGNLGLLERLRRPYGREHWQLIRSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASGR
Ga0207683_107039871	3300026121	Miscanthus Rhizosphere	MASILEELRRPYGREHWDLIKAGRDGSYWQRADGLIVRLAVAEAVHQADGVARVLLDLAI
Ga0207698_109199403	3300026142	Corn Rhizosphere	LPEVTTIDGYEAHKMARILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVV
Ga0268264_119651911	3300028381	Switchgrass Rhizosphere	VTTNDGREAHKMASGNFSLLERLRRPYGREHWQLIKSGREGSYWQAADGLIVRLAVAETVHQADSVARTLLELAVQYASGR
Ga0307503_109447951	3300028802	Soil	MASNGLGILEELRRPYGREHWELVKSSKDGAYWQKADGLIVRLAVAESVHQADSLGRLLLDLAVQYAAGK
Ga0308200_11809121	3300030905	Soil	REHWELVKSSRDGSYWQKADGLIVRLAVAESVHQADSLGRLLLDLAVQYAAGK
Ga0310904_101236323	3300031854	Soil	VVTIIDGNEAHKMANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHETDVVARHLLELAVQYAAGR
Ga0308175_1009615892	3300031938	Soil	AHRMANLMERIRRPYGREYWELIRSGKEGSYWQAADGLVIRLCVAEAAHEADGVARHLLELAVQYASGR
Ga0308174_101922013	3300031939	Soil	REYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0308176_117837871	3300031996	Soil	RPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0307416_1027508741	3300032002	Rhizosphere	MAHVLERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQY
Ga0308173_100475195	3300032074	Soil	MANILERLRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHEADVVARHLLELAVQYASGR
Ga0310890_101832351	3300032075	Soil	MANILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAYETDVVARHLLELAVQYA
Ga0335082_100443875	3300032782	Soil	MADILERIRRPYGREYWELIRSGREGSYWQAADGLIVRLAVAETVHEADHVARVLLKLAVKYAAGG
Ga0335070_102499331	3300032829	Soil	MASILERLRRPYGREYWELIRSGREGSYWRAADGLIVRLAVAETVHEADHVARVLLKLAVKYAAGG
Ga0335076_110207502	3300032955	Soil	MAGILEELRRPYGREHWQLIKSGREGSYWQAADGLIVRLAVAECVHQADHAVSVARALLDLAVQYASGR
Ga0314786_156708_3_197	3300034664	Soil	NILERIRRPYGREYWELIRSGKEGSYWQAADGLIVRLCVAEAAHETDVVARHLLELAVQYAAGR
Ga0314798_088665_315_515	3300034673	Soil	MASILERLRRPCGRDYWELIRSGKEGSYWQAADGLIVRLCVAEAAHETDVVARHLLELAVQYAAGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters