Metagenome / Metatranscriptome Family F098009

Overview

Basic Information

• Family ID: F098009
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 104
• Average Sequence Length: 53 residues
• Representative Sequence: ALNNNTAGVREREDASRTREAGHLDGIQGVVANTLKLPRGGTVGFIDW
• Number of Associated Samples: 90
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 14.29 %
• % of genes near scaffold ends (potentially truncated): 2.88 %
• % of genes from short scaffolds (< 2000 bps): 6.73 %
• Associated GOLD sequencing projects: 85
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (93.269 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (34.615 % of family members)
• Environment Ontology (ENVO): Unclassified (40.385 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (57.692 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 0.00%
  Coil/Unstructured: 100.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF12681	Glyoxalase_2	4.81
PF00903	Glyoxalase	3.85
PF00892	EamA	2.88
PF07883	Cupin_2	2.88
PF13376	OmdA	1.92
PF01694	Rhomboid	1.92
PF13649	Methyltransf_25	1.92
PF01548	DEDD_Tnp_IS110	1.92
PF11954	DUF3471	0.96
PF16864	Dimerisation2	0.96
PF12973	Cupin_7	0.96
PF13924	Lipocalin_5	0.96
PF10604	Polyketide_cyc2	0.96
PF06172	Cupin_5	0.96
PF02517	Rce1-like	0.96
PF08002	DUF1697	0.96
PF02811	PHP	0.96
PF00144	Beta-lactamase	0.96
PF00589	Phage_integrase	0.96
PF02371	Transposase_20	0.96
PF00557	Peptidase_M24	0.96
PF11138	DUF2911	0.96
PF01042	Ribonuc_L-PSP	0.96
PF12680	SnoaL_2	0.96
PF13474	SnoaL_3	0.96
PF01384	PHO4	0.96
PF13495	Phage_int_SAM_4	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.88
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	1.92
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.96
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.96
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.96
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.96
COG3542	Predicted sugar epimerase, cupin superfamily	General function prediction only [R]	0.96
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	0.96
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
All Organisms	root	All Organisms	6.73 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
cellular organisms	root	All Organisms → cellular organisms	6.73 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.73 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.88 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.88 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.92 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.92 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300004156|Ga0062589_100220816	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1390
3300005171|Ga0066677_10836557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	508
3300006046|Ga0066652_100203560	All Organisms → cellular organisms → Bacteria	1704
3300006169|Ga0082029_1135791	All Organisms → cellular organisms → Bacteria	768
3300006796|Ga0066665_10403758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1127
3300010326|Ga0134065_10036459	All Organisms → cellular organisms → Bacteria	1465
3300012204|Ga0137374_10464514	All Organisms → cellular organisms → Bacteria	991

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.27%
Host-Associated	Host-Associated	6.73%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.38%
Plants	Host-Associated → Plants	6.73%
Aquatic	Environmental → Aquatic	2.88%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Sediment	Environmental → Aquatic → Sediment	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.96%
Loam	Environmental → Terrestrial → Soil → Loam	14.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%

Subtype

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	39.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	34.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental
3300006169	Termite nest microbial communities from Madurai, India	Environmental
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_17000520	2124908045	Soil	LNNITAGVREREDANRTREAGHLDEIQGVVANTLDLFRNGAVGFIDWLGGCGWLTD
JGI24036J26619_101243961	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRGGPVGFIDWYIXEGIA
Ga0062593_1026100491	3300004114	Soil	LNNITAGVRERQHVNRTREAGHLDEIQGAVANTLKLHRWAVDFIDWLDA
Ga0062589_1002208162	3300004156	Soil	LNNITAGVREREGENRSREAGHMDKIQGIVANRLNLLGNGAAGFIDWLGLRK*
Ga0063356_1053696292	3300004463	Arabidopsis Thaliana Rhizosphere	LNNITAAVRECQDANRTRKAGRLDEIQGVVAIMLNHFANGVVGFIDWLDAALEHGGGG
Ga0066672_110123491	3300005167	Soil	KSNTAGVREREDANRTREGGHVGETQSVMASMAKSFRNGAAGFIDWLDGRRRSSPSRAH*
Ga0066677_103203861	3300005171	Soil	LNNFTAGVREREETNRTRVAGHLDEIQGAVANTLRLSREGAVGFIGWLGLSC*
Ga0066677_108365571	3300005171	Soil	LSNITTGVREREDANRTREAGHLDEIQGVVANTLDLFRNGAVGFIDWLGH
Ga0066683_107744363	3300005172	Soil	PNEKEKARQALNNFTAGVREREETNRTRVAGHLDEIQGAVANTLRLSREGAVGFIGG*
Ga0066673_103656321	3300005175	Soil	RDQPRLALNNTTAGMRERGGANRTREAGHLDEIQGVVANTLDLFRNGAVGFIVWLGWVI*
Ga0066673_105236271	3300005175	Soil	ERDKPRLALKSNTAGVREREDANRTREAGHLDEIEGAVANTLRFSRQGVVGFIDWLERS*
Ga0066690_101845604	3300005177	Soil	NITAGVREREDANRTREAEHLDEIQGVVANTLDLFRNGAVGFIDWLDRSRLDH*
Ga0066690_107033012	3300005177	Soil	MAALNNITAGVRERADANRTREAGHLDEIQGVVASSLKLYRQGAVGFIDWLDPLWP*
Ga0066688_106015582	3300005178	Soil	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRAGTVGFIG*
Ga0066684_101765241	3300005179	Soil	VREREEASRTREAGHVDGIQGAVASTPKLPRAGTVGFIDW*
Ga0066685_101001631	3300005180	Soil	NEKEMPRLALKSNTAGVREREDANRTREAGHLDEIEGAVANTLRFSRQGVVGFIDWLERS
Ga0066678_101367311	3300005181	Soil	LNNITAEVREREDANRTREAGHLDEIQGVVANTLKLYRNGAVGFIDWLGLGVTT*
Ga0066678_110546161	3300005181	Soil	RERDKPRLALKSNTAGVRERESANRTREAGHRDEIERVVANTLKLSRNGAVGFIVWLDAL
Ga0066671_100088827	3300005184	Soil	LNNNTAGVREREEASRTREAGHVDGIQGAVASTPKLPRAGTVGFIDW*
Ga0066676_100957614	3300005186	Soil	KPRLALNNITAGVREREDANRTREAGHLDEIQSAVANTLNLFRGGAVGFIDWLGSQSL*
Ga0066676_101165243	3300005186	Soil	LNNITAGVRERQDTNRTREAGQLDEIQRAVANTLRLSREGAVGFIDWLHVIQNGLKELKV
Ga0066676_111827172	3300005186	Soil	DRDKPRQSLNNNTAGVREREHANRTREAGNRDEVEGVMANTLKVHRNGAVGFIDWLDVFVRFTWRK*
Ga0066675_114187622	3300005187	Soil	LNNITAGVCEREDANRTRVAGHLDEIQGAVANILKLYRNGAIGFIDWLDVWPCFKVSAIALR*
Ga0068869_1008576563	3300005334	Miscanthus Rhizosphere	LNNITAGVREREGENRRREAGHMDKIQGIVANRLNLLGNRAAAFIDWLGLPK*
Ga0070669_1000918592	3300005353	Switchgrass Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRGGPLGFIDW*
Ga0070709_101952064	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRSREAGHLDGIQGAVASTPKLPRGGPVGFIDW
Ga0070713_1005959633	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VREREDASRTREAGHVDEIQGVVANTPKLPRGGTVGFIDW*
Ga0070710_102553013	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRGGPVGFID*
Ga0066681_105283451	3300005451	Soil	LNNITAGVCERQDANRTREAGHLDEIQGVVANTLKLFPDGAVGFIDWLH
Ga0068867_1009385472	3300005459	Miscanthus Rhizosphere	GVREREDASRTREAGHLDEIQGVVANTPKLPRGGTVGFIDW*
Ga0070697_1004905222	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVANTPKLPRGGTVGFIDW*
Ga0070697_1007902391	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RLALNNITAGVREREDANRTREAGHLDEIQGVLAITLNSYRNGAVG*
Ga0070672_1012230322	3300005543	Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRGGP
Ga0070665_1017238691	3300005548	Switchgrass Rhizosphere	EDASRTREAGHLDGIQGAVASTPKLPRGGPLGFIDW*
Ga0070704_1009954402	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VLNNNTAGVREREETNRTRVAGHLDEIQGVVASRLKGSRNGDVGFIDWLDSLSELRNTR*
Ga0066692_106666843	3300005555	Soil	RLALNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRAGTVGFIG*
Ga0066707_105304251	3300005556	Soil	LNNITAGVRERGDANRTREAGHLDEIQGVVAKTLWLFRNGAVGFTDWLDLMRGSAILVAHS*
Ga0066700_104511181	3300005559	Soil	LNNITAGVREREDANRTREVGHLDEIQGVVASSLNLFRNGAVGFIDWLGVAVLTKER*
Ga0066703_100850041	3300005568	Soil	GVREREDASRTREAGHVDGIQGAVASTPKLPRAGTVGFIDW*
Ga0066705_100782731	3300005569	Soil	LKDITAGVREREDANRTREAGHLDEIQVDGNHAEVISQGAVGFIVWLDLFVNYLE
Ga0066708_102288513	3300005576	Soil	LNNVTAGVREREEANRTREAGHLDEIQGVVANTLKLHRNGAVGFIDWLGLMDVLIWVNKA
Ga0066691_103247571	3300005586	Soil	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRAGTVGFIDW*
Ga0066654_104609902	3300005587	Soil	TAVEVHQRERDKPRLVLNNNTAGVREREDASRTREAGHLDRIQGAVASTPKLPRAGTVGFIDW*
Ga0066706_105258303	3300005598	Soil	LNNNTAGVREREEANRTRVAGHLDEIQGVVANSLNLQRNAAVGFIVWLGPRAADRH*
Ga0066706_107054251	3300005598	Soil	LSNITAGVREREDANRTREAGHLDEIQGVVANTLAVIRSGAVGFIDWLGVSVIRS*
Ga0066706_113718012	3300005598	Soil	RDKPRLALKSNTAGVREREDANRTREAGHRDEVEGVVANTLRFSRKGAVGLIGWLDG*
Ga0066706_113810082	3300005598	Soil	RDKPRLALKSNTAGVREREDANRTREAGHRDEVEGVVANTLNLFRNRAVGFIV*
Ga0068866_105653952	3300005718	Miscanthus Rhizosphere	MAGMREREDASRTGEAGAPDEIQGAVANTPKLPFAGTVGFIDW*
Ga0066652_1002035603	3300006046	Soil	LNNNTAGVREREDASRTREAGHLDGIQGVVANTLNLLCNGAVGFIDESYGSGAGK*
Ga0066652_1010820883	3300006046	Soil	LNNITAGVRERGDANRTREAGHLDEIQGVVANTLKLFRNGAVGFIDWLGLTL*
Ga0066652_1014632831	3300006046	Soil	RDKPRQSLNNNTAGVREREDANRTREAGNRDEVEGVVANLVKLLLNGPVGFIDWVDA*
Ga0082029_11357911	3300006169	Termite Nest	LNNNTAGVCEREDANRTRVAGHLDEIQGVVANTLTLQRHGAVGFSWIAWLVWDAFFIGV
Ga0070712_1002140682	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGRLDGIQGAVANTPKLPRGGTVGFIDR*
Ga0070765_1010537361	3300006176	Soil	PRLALKSNTAGVRELEEANRTREAGSVDEIQGVVASKLNSPWLGAGGFIAG*
Ga0066665_104037582	3300006796	Soil	LNNITAGVCEREEANRTRVAGHLDEIQGAVANTLNLFRHGAVGFIGG*
Ga0066659_115049702	3300006797	Soil	LNNNAAGVRECEETNRTRVAEHLDEIQGVVASALNLFLNGAVGFIDWLGWVI*
Ga0066710_1003088231	3300009012	Grasslands Soil	KPRLALNNNTAGVRERESVNRTRVVGHRDEVEGVVANTLRSPRNGAVGFIDWLDRSSIQLLCA
Ga0066710_1030467581	3300009012	Grasslands Soil	LNNITAGVRERGDANRTREAGHLDEIQGVVAKTLWLFRNGAVGFTDWLDLMRGSAILVAH
Ga0134109_104271231	3300010320	Grasslands Soil	LNNITAGVREREDANRTREAGHLDEIQGAMASTLKLFPNGAVGFIDWLGSVLSIGFDDLC
Ga0134065_100364593	3300010326	Grasslands Soil	TAGVREREEANRTREAGHLDEIQGVVANKLDLFRNGAVGFIDWLDAFIRHSSIE*
Ga0126379_114330601	3300010366	Tropical Forest Soil	RERDKPRLSLKSNTAGVRERENANRTREVGNRDEVEGVVANTLSFFRNGAVGFIASA*
Ga0134125_130140032	3300010371	Terrestrial Soil	LNNNTAGVREREDASRTREAGHLDEIPVVAANRPKLARGGAGGFIGRALCAKALREVA
Ga0134128_101723235	3300010373	Terrestrial Soil	ERDKPRPAVSNNTAGMRERKDASRTREAGPLDEIQGAVANTPKLPRGGTVGFIDR*
Ga0126381_1034996581	3300010376	Tropical Forest Soil	KPRLALDNNTAGVRERQEANRTREAGHVDEIQGVVANRLELFSHGPLASSLG*
Ga0134121_100986273	3300010401	Terrestrial Soil	MRERKDASRTREAGPLDEIQGAVANTPKLPLAGTVGFIDW*
Ga0137383_103704052	3300012199	Vadose Zone Soil	TAGVRERQNANRTREAGHLDEIQGAVANTLNLFRNGVVGFIGWLGG*
Ga0137365_101625012	3300012201	Vadose Zone Soil	RLALNNNTAGVREGEDANRTREVGHLDEIQGVIATTLTLFRNGAVG*
Ga0137363_116553601	3300012202	Vadose Zone Soil	LNNFTAGVREREDANRTREAGHLDEIQGAVANTLNLFCNGAVGFIDWLDGRVH
Ga0137374_104645142	3300012204	Vadose Zone Soil	VLNNNTAGVREREEANRTREAGHLDEIQGVVANAVKLHRNGAVGFIDWLDPFIRHSSIE*
Ga0137371_111464161	3300012356	Vadose Zone Soil	LALNNITAGVREREDANRTREAGHLDEIQGAVANTLNLYRNGAVGFTVWLGWVI*
Ga0137360_105731001	3300012361	Vadose Zone Soil	KPRLALDNITAGVREREDANRTREAGHLDEIQGVLANTLKLYRNGAVGFIDWLDVWAW*
Ga0137373_107032451	3300012532	Vadose Zone Soil	RETDKPRQSLKNNTAGVREREDENRTREAGNRDEVEGVVANTLKLYRNGAVGFIVWLGL*
Ga0157306_101514422	3300012912	Soil	GVREREGENRSREAGHMDKIQGIVANRLNLLGNGAAGFIDWLGLRK*
Ga0137396_102888211	3300012918	Vadose Zone Soil	LNNITAGVREREDANRTREAVHLDGIQGVVANTLNSFRHRAVGFIDWLDGSAVNTPGI*
Ga0137413_100175441	3300012924	Vadose Zone Soil	NKPRLALNNITAGVREREDANRTRVAGHLDEIQGVVANTRNLYRNGAVAASIG*
Ga0137419_102221431	3300012925	Vadose Zone Soil	LALNNNTAGVREREDASRTREAGHLDEIQGAVANRPRLPRGGTVDFIDW*
Ga0137418_101388484	3300015241	Vadose Zone Soil	LINFTAGERERANRTRVAGHLDEIQGVVANMLNLFRNGAVGFIDWLDLIS*
Ga0137412_108542191	3300015242	Vadose Zone Soil	ERDKPRLALNNNTAGVREREDASRTREAGHLDEIQGAVANTPKLLRGGTVGFIDW*
Ga0134072_100521622	3300015357	Grasslands Soil	LNNNTAGVREREETNRTRVAGHLDEIQGVVANTLKLHRNGAVGFIDWLGLMDVLIWVNKA
Ga0184611_10671413	3300018067	Groundwater Sediment	VREGEDANRTRVAGHLDEIQGVVANTPNMQLNRAVGFIDWLEDIMLWQQTKCNACH
Ga0066667_108060591	3300018433	Grasslands Soil	ERDKPRLALKSNTAGVREREDANRTREAGHLDEIEGAVANTLRFSRQGVVGFIDWLERS
Ga0066667_111981752	3300018433	Grasslands Soil	KPRLALNNITAGVREREDANRTREAGHLDEIQSAVANTLNLFRGGAVGFIDWLGSQSL
Ga0193729_10661161	3300019887	Soil	LNNNTAGVREREDANRTREAGHLDEIQGVVASTPGSLRNGAVGFIDWLDARAP
Ga0193751_11980061	3300019888	Soil	ALDNITAGVREREDANGTREAGRLYEIQGVVANTLNVYRNEAVGFIDWLGLQRVTGA
Ga0193757_10172532	3300020008	Soil	ALNNNTAGVREREDASRTREAGHLDGIQGVVANTLKLPRGGTVGFIDW
Ga0193749_10694631	3300020010	Soil	KPRQSLNNFTAGVREGEQTNRTRVAGSRDEVEGVVANTLDLFRNGAVGFIDWLDRLQSIH
Ga0210382_103765461	3300021080	Groundwater Sediment	RLALNNNTAGVREREDASRTREAGHLDEIQGAVANTPKLLRGGTVGFIDW
Ga0193709_10901602	3300021411	Soil	RERDKPRLALNNNTAGVREREEASRTREAGHVDEIQGAVANTPKLPRGGTVGFIDW
Ga0222622_104987082	3300022756	Groundwater Sediment	NTAGVREREDANRTRVAGHLDEIQGAVASTVNLQCNGALRCHEGLQGVCRQGTRRL
Ga0207685_100353942	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VLNNNTAGVREREETNRTRVAGHLDEIQGVVASRLKGSRNGDVGFIDWLDSLSELRNTR
Ga0207684_100136781	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	KPRLALKSNTAGVREREDVNRTREAGNRDEVEGVVANTLKSQRNGAVGFIVWLGQRAFES
Ga0207693_102610993	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	ALNNNTAGVREREETNRTRVAGHLDEIQGVVASRLKGSRNGDVGFIDWLDSLSELRNTR
Ga0209375_10478751	3300026329	Soil	MSQRDKPQPALNNITAGVCEREDANRTREAGHLDEIQGVVANTVNVLRGGAVG
Ga0209473_10643931	3300026330	Soil	MSQRDKPQLALNNITAGVREREDANRTREAGHLDEIQGVVANTVNVLRGGAV
Ga0257146_10903651	3300026374	Soil	RDKPRLALNNNTAGVREREETNRTRVAGHLDEIQGVVANTLNLFRNGAVRCHEGL
Ga0257153_10609781	3300026490	Soil	PRLALNNNTAGVREREDANRTREAGHLGEIQGVLARFLAFPRSGVVDFID
Ga0209056_1000043150	3300026538	Soil	LNNITAGVREREDANRTREAGHLDEIQGVVANTLNLFCHGAVGFIDWLGLTT
Ga0179587_104119632	3300026557	Vadose Zone Soil	LALNNNTAGVRERKDANRTRVAGHLDEIQGVVASTMDAFRGGDVGFIDWLDSLSELRNTR
Ga0209488_112028031	3300027903	Vadose Zone Soil	ALNNITAGVREREDANRTRVAGHLDEIQGVVANTRNLYRNGAVAASIG
Ga0247827_111144572	3300028889	Soil	VREREDASRTRKAGHLDEIRGVVANTPKLPRGGTVGFIDWYI
Ga0075374_114043521	3300030855	Soil	TAGVREREDANRTREAGHLDEIQGVVANMLGAFRNGAVGFIGWLGRMDIMAQLL
Ga0170834_1107469982	3300031057	Forest Soil	LNNFTAGVREREDANRTREAGHLDEIQGVVANMLGAFRNGAVGFIGWLGRMDIMAQLL
Ga0170818_1027361182	3300031474	Forest Soil	ALNNITAGVHEREDANRTRETGSLDEIQGAVANTLKLHRDWAVGFIDWLGRLLG
Ga0310811_109007591	3300033475	Soil	ALDNITAGVREREDANRTREAGHLDEIQGVVANTLKLPRYGAVGFTIG