Metagenome / Metatranscriptome Family F097991

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097991
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	39 residues
Representative Sequence	EADPQVQKAVEAIPQARALYQNARKIVAQRMGGSFDQP
Number of Associated Samples	97
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	86.54 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.692 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.462 % of family members)
Environment Ontology (ENVO)	Unclassified (26.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.91% β-sheet: 0.00% Coil/Unstructured: 59.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF12867	DinB_2	3.85
PF13444	Acetyltransf_5	3.85
PF02321	OEP	2.88
PF13180	PDZ_2	1.92
PF00589	Phage_integrase	1.92
PF13683	rve_3	1.92
PF00069	Pkinase	1.92
PF02687	FtsX	1.92
PF00291	PALP	1.92
PF07690	MFS_1	1.92
PF03544	TonB_C	0.96
PF01425	Amidase	0.96
PF13565	HTH_32	0.96
PF00271	Helicase_C	0.96
PF01565	FAD_binding_4	0.96
PF01850	PIN	0.96
PF02272	DHHA1	0.96
PF01904	DUF72	0.96
PF00082	Peptidase_S8	0.96
PF13424	TPR_12	0.96
PF12161	HsdM_N	0.96
PF08241	Methyltransf_11	0.96
PF13620	CarboxypepD_reg	0.96
PF13624	SurA_N_3	0.96
PF13570	PQQ_3	0.96
PF15631	Imm-NTF2-2	0.96
PF04542	Sigma70_r2	0.96
PF03702	AnmK	0.96
PF00903	Glyoxalase	0.96
PF13578	Methyltransf_24	0.96
PF08281	Sigma70_r4_2	0.96
PF03551	PadR	0.96
PF01292	Ni_hydr_CYTB	0.96
PF00873	ACR_tran	0.96
PF00106	adh_short	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.69
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	5.77
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.96
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.96
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.96
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.96
COG3038	Cytochrome b561	Energy production and conversion [C]	0.96
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.96
COG2377	1,6-Anhydro-N-acetylmuramate kinase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.96
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.96
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.96
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.96
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.96
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.96
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.96
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.69 %
Unclassified	root	N/A	17.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.69 %
Unclassified	root	N/A	17.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.69 %
Unclassified	root	N/A	17.31 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	57.69 %
Unclassified	root	N/A	17.31 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.31 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.58 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.92 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.58 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.62 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.96 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.58 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.96 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.58 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	4.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.96 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.96 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.96 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.58 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	4.81 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.96 %
Paraburkholderia caribensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia caribensis	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.96 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100760953	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	799	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100762801	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	898	Open in IMG/M
3300002245\|JGIcombinedJ26739_100671785	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	914	Open in IMG/M
3300005176\|Ga0066679_10080535	All Organisms → cellular organisms → Bacteria → Acidobacteria	1944	Open in IMG/M
3300005332\|Ga0066388_101051912	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1371	Open in IMG/M
3300005446\|Ga0066686_10169332	All Organisms → cellular organisms → Bacteria	1452	Open in IMG/M
3300005467\|Ga0070706_101192288	All Organisms → cellular organisms → Bacteria → Acidobacteria	700	Open in IMG/M
3300005468\|Ga0070707_101616943	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	615	Open in IMG/M
3300005526\|Ga0073909_10154979	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300005536\|Ga0070697_101986283	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300005537\|Ga0070730_10805954	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300005538\|Ga0070731_10028947	All Organisms → cellular organisms → Bacteria → Acidobacteria	3764	Open in IMG/M
3300005547\|Ga0070693_100667864	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300005560\|Ga0066670_10737632	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300005598\|Ga0066706_11438278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300005764\|Ga0066903_105675097	Not Available	656	Open in IMG/M
3300006172\|Ga0075018_10041957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1872	Open in IMG/M
3300006176\|Ga0070765_100263280	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300006603\|Ga0074064_11730680	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300006893\|Ga0073928_10086952	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2661	Open in IMG/M
3300009038\|Ga0099829_10676563	Not Available	858	Open in IMG/M
3300009088\|Ga0099830_11730849	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300009090\|Ga0099827_10051548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3097	Open in IMG/M
3300009137\|Ga0066709_101819497	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300009177\|Ga0105248_10890671	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1005	Open in IMG/M
3300009549\|Ga0116137_1055075	All Organisms → cellular organisms → Bacteria → Acidobacteria	1276	Open in IMG/M
3300009553\|Ga0105249_12067920	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	642	Open in IMG/M
3300010325\|Ga0134064_10011736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2367	Open in IMG/M
3300010339\|Ga0074046_10522452	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300010341\|Ga0074045_10020629	All Organisms → cellular organisms → Bacteria	5177	Open in IMG/M
3300010361\|Ga0126378_12460153	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	595	Open in IMG/M
3300010362\|Ga0126377_11177855	All Organisms → cellular organisms → Bacteria → Acidobacteria	836	Open in IMG/M
3300012209\|Ga0137379_10967084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300012359\|Ga0137385_10311449	Not Available	1353	Open in IMG/M
3300012362\|Ga0137361_10127823	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	2247	Open in IMG/M
3300012362\|Ga0137361_10463244	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300012685\|Ga0137397_10581543	All Organisms → cellular organisms → Bacteria → Acidobacteria	833	Open in IMG/M
3300012903\|Ga0157289_10437787	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	501	Open in IMG/M
3300012924\|Ga0137413_10662798	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300012929\|Ga0137404_10261615	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
3300012930\|Ga0137407_10415036	All Organisms → cellular organisms → Bacteria → Acidobacteria	1248	Open in IMG/M
3300012944\|Ga0137410_10186408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia caribensis	1599	Open in IMG/M
3300012971\|Ga0126369_11233239	Not Available	838	Open in IMG/M
3300014151\|Ga0181539_1100971	Not Available	1215	Open in IMG/M
3300016357\|Ga0182032_10189573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1556	Open in IMG/M
3300016387\|Ga0182040_11006447	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300016387\|Ga0182040_11125022	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
3300017823\|Ga0187818_10444798	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300017927\|Ga0187824_10295810	Not Available	572	Open in IMG/M
3300017930\|Ga0187825_10405571	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300017934\|Ga0187803_10261886	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	686	Open in IMG/M
3300017955\|Ga0187817_11019511	Not Available	530	Open in IMG/M
3300017974\|Ga0187777_10182687	Not Available	1409	Open in IMG/M
3300018018\|Ga0187886_1177572	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300018030\|Ga0187869_10490416	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300018062\|Ga0187784_10975860	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300018088\|Ga0187771_10903760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300018482\|Ga0066669_10157871	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300020021\|Ga0193726_1245602	Not Available	728	Open in IMG/M
3300020579\|Ga0210407_10832189	Not Available	710	Open in IMG/M
3300020580\|Ga0210403_10718502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300020580\|Ga0210403_11010037	All Organisms → cellular organisms → Bacteria → Acidobacteria	650	Open in IMG/M
3300021088\|Ga0210404_10035800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2256	Open in IMG/M
3300021170\|Ga0210400_10179921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1713	Open in IMG/M
3300021402\|Ga0210385_10260180	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1278	Open in IMG/M
3300021403\|Ga0210397_11466356	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300021432\|Ga0210384_10587946	All Organisms → cellular organisms → Bacteria → Acidobacteria	1000	Open in IMG/M
3300021433\|Ga0210391_11414631	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300021474\|Ga0210390_11233915	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300022726\|Ga0242654_10315897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300026298\|Ga0209236_1004673	All Organisms → cellular organisms → Bacteria → Acidobacteria	8348	Open in IMG/M
3300026298\|Ga0209236_1117683	Not Available	1175	Open in IMG/M
3300026310\|Ga0209239_1192455	All Organisms → cellular organisms → Bacteria → Acidobacteria	748	Open in IMG/M
3300026317\|Ga0209154_1046991	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300026532\|Ga0209160_1127839	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300027655\|Ga0209388_1005686	All Organisms → cellular organisms → Bacteria	3209	Open in IMG/M
3300027684\|Ga0209626_1046019	All Organisms → cellular organisms → Bacteria → Acidobacteria	1088	Open in IMG/M
3300027701\|Ga0209447_10003701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4603	Open in IMG/M
3300027737\|Ga0209038_10128286	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300027768\|Ga0209772_10153307	Not Available	723	Open in IMG/M
3300027787\|Ga0209074_10397663	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300027812\|Ga0209656_10488943	Not Available	539	Open in IMG/M
3300027825\|Ga0209039_10044176	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2058	Open in IMG/M
3300027825\|Ga0209039_10179350	All Organisms → cellular organisms → Bacteria → Acidobacteria	869	Open in IMG/M
3300027875\|Ga0209283_10066217	All Organisms → cellular organisms → Bacteria → Acidobacteria	2322	Open in IMG/M
3300027894\|Ga0209068_10338799	Not Available	850	Open in IMG/M
3300028047\|Ga0209526_10291377	All Organisms → cellular organisms → Bacteria → Acidobacteria	1107	Open in IMG/M
3300031022\|Ga0138301_1890069	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300031122\|Ga0170822_14057870	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300031231\|Ga0170824_119013290	Not Available	1344	Open in IMG/M
3300031719\|Ga0306917_11121572	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300031720\|Ga0307469_12375515	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300031744\|Ga0306918_11341625	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300031753\|Ga0307477_10059129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2639	Open in IMG/M
3300031754\|Ga0307475_10243437	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300031754\|Ga0307475_11291663	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300031823\|Ga0307478_10097393	All Organisms → cellular organisms → Bacteria	2273	Open in IMG/M
3300031962\|Ga0307479_10915664	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300032067\|Ga0318524_10662305	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300032892\|Ga0335081_10637500	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300032893\|Ga0335069_12670543	Not Available	514	Open in IMG/M
3300032897\|Ga0335071_12023003	Not Available	519	Open in IMG/M
3300033158\|Ga0335077_11364047	Not Available	685	Open in IMG/M
3300033289\|Ga0310914_11668724	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.08%
Host-Associated	Host-Associated	1.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.77%
Aquatic	Environmental → Aquatic	17.31%
Plants	Host-Associated → Plants	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.77%
Freshwater	Environmental → Aquatic → Freshwater	14.42%
Sediment	Environmental → Aquatic → Sediment	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.42%
Loam	Environmental → Terrestrial → Soil → Loam	9.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.08%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.96%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.69%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1007609531	3300000364	Soil	PQVXKGVEAVPQARALYQNARKIVAQRTGASIDQP*
INPhiseqgaiiFebDRAFT_1007628011	3300000364	Soil	LLEADPQVQKGVEAIPQARALYQNARKVVAQRTGAGIDQP*
JGIcombinedJ26739_1006717853	3300002245	Forest Soil	EADPQVQKAVDAIPQARALYQNARKIVAQRTGTPIDQP*
Ga0066679_100805351	3300005176	Soil	KVLLEADPQVQKAVEAIPQARALYQNVKKIVAQRSGGAIEQP*
Ga0066388_1010519121	3300005332	Tropical Forest Soil	SEGSKVLIEADPQVQAAMDALPQARTLYQSARKIVAQRTGTTTLDQP*
Ga0066686_101693323	3300005446	Soil	LEADPQVQKAVEAVPQAGALYQKVRRIVAQRTGGAAEQP*
Ga0070706_1011922881	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	SDPQVQKAVEAIPQARALYENARKIVAQRAGLAPGQTQP*
Ga0070707_1016169431	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	ELEDDLQVQKAVESIPQARALYENARKVIAQRTGAQNTFR*
Ga0073909_101549793	3300005526	Surface Soil	PQVQKAVDAIPQARALYLNAKRITAQRTGGAIDQP*
Ga0070697_1019862833	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LEADPQLQKGVEAMPQARALYQNARKIVAQRTGGTIDQP*
Ga0070730_108059542	3300005537	Surface Soil	MLEADPQVQKAVEAIPQARALYQNARKIVAQRTGATFDQP*
Ga0070731_100289471	3300005538	Surface Soil	VQKAVEAVPQARALYQNARKIVAQRAGTSSIDQP*
Ga0070693_1006678642	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	ELEADPQVQKAVDAIPQARALYENARKVVAQRMGGASVDQP*
Ga0066670_107376323	3300005560	Soil	KVLLEADPQVQKAVEAIPQARALYQNAKKIVAQRAGNSIERP*
Ga0066706_114382781	3300005598	Soil	LLEADPQVQKAVEAIPQARALYQNAKKIVAQRAGGPVEQP*
Ga0066903_1056750971	3300005764	Tropical Forest Soil	QVQKAVEAVPQARALYQNAHKIMAQRMGGSNDQP*
Ga0075018_100419571	3300006172	Watersheds	VLLEADPQVQKAVEAIPQARALYQNARKIVAQRTGERGDQP*
Ga0070765_1002632801	3300006176	Soil	EADPQVQKAVEAVPQARALYQNVRKIVAQRAGGNLDQP*
Ga0074064_117306803	3300006603	Soil	KVLLEADPQVQKGIEAIPQARALYQNARKIVAQRNGGSLDQP*
Ga0073928_100869525	3300006893	Iron-Sulfur Acid Spring	VLLEADPQVQKAVDSIPQARALYQNARKIVAQRTGTPIDQP*
Ga0099829_106765633	3300009038	Vadose Zone Soil	LLEADPQVQKAVEAVPEARALYQKTRRIVAQRTGGAVEQP*
Ga0099830_117308492	3300009088	Vadose Zone Soil	DDVQLQKAIESIPQARALYENARRVIAQRSSNGQSPR*
Ga0099827_100515481	3300009090	Vadose Zone Soil	LSVFGLPDSVKVELEADPQVQKAVESIPQARALYESVRKVIAQRSGEPVSKP*
Ga0066709_1018194971	3300009137	Grasslands Soil	ADPQVQKAVEAIPQARALYQNAKKIVAQRAGGTIEQP*
Ga0105248_108906711	3300009177	Switchgrass Rhizosphere	QVQKGVEAVPQARALYQNARKIVAQRAGASIDQP*
Ga0116137_10550752	3300009549	Peatland	LLEADPQVQKAIEAIPQARALYENARKVVAQRTGASPDQP*
Ga0105249_120679201	3300009553	Switchgrass Rhizosphere	PQVQKAVEAVPQARALYQNARKIVAQRTGAGIDQP*
Ga0134064_100117361	3300010325	Grasslands Soil	QVQKAVEAIPQARALYQNAKKIVAQRAGEPVEQP*
Ga0074046_105224522	3300010339	Bog Forest Soil	ADPQVQKAIEAIPQARALYENARKVVAQRAGTTPDQP*
Ga0074045_100206291	3300010341	Bog Forest Soil	ADPQVQKAVEAIPQARALYDNARKVVAQRAGATPTDQP*
Ga0126378_124601532	3300010361	Tropical Forest Soil	QVQAAVDAIPKARALYQNAKKIIAQRSGGAVEQP*
Ga0126377_111778553	3300010362	Tropical Forest Soil	DPQVQKAIESVPQARALYQNARKIVAQRNGGSIDQP*
Ga0137379_109670842	3300012209	Vadose Zone Soil	FKVLLEADPQVQKAVEAIPQARALYQNAKKIVAQRAGGPVEQP*
Ga0137385_103114494	3300012359	Vadose Zone Soil	LEADPQVQKAVEAVPQARALYQNARRIVAQRTGGAVEQP*
Ga0137361_101278235	3300012362	Vadose Zone Soil	GDKVLLAADPQVQKAVESIPQARALYENARKVVAQRNGSGHDQP*
Ga0137361_104632441	3300012362	Vadose Zone Soil	GTKVQLEADPQVQKAVEAIPQARALYETARKIVAQRAGLTPDQP*
Ga0137397_105815432	3300012685	Vadose Zone Soil	FLSAYGQAEGTKVQLESDPQVQKAVEAIPAARALYESARKIVAQRAGLAPAQP*
Ga0157289_104377871	3300012903	Soil	PQVQKAVEAVPQARALYQNAKKIVAQRTGAGIDQP*
Ga0137413_106627982	3300012924	Vadose Zone Soil	QLESDPQVQKAVEAIPQARALYENARKIVAQRAGLAPAQP*
Ga0137404_102616152	3300012929	Vadose Zone Soil	QVQKAVEAIPQARALYENARKIVAQRAGLAPAQP*
Ga0137407_104150363	3300012930	Vadose Zone Soil	SAYGTQEGDKVLLAADPQVQKAVDSIPHARALYENARKVVAQRNGSNHDQP*
Ga0137410_101864083	3300012944	Vadose Zone Soil	VLLEADPQVQKAVESIPQARALYQNARKIVAQRNGGSLDQP*
Ga0126369_112332391	3300012971	Tropical Forest Soil	QVQKAVEAVPQARALYQNARKIVAQRTGESPDQP*
Ga0181539_11009711	3300014151	Bog	QMQKAIEAIPQARALYENARKVVAQRSGSSPNQP*
Ga0182032_101895731	3300016357	Soil	EADPQVQKGVEAVPQARALYQNARKIVAQRAGGGVDQP
Ga0182040_110064471	3300016387	Soil	EADPQVQKAVEAVPQARALYENARKVVAQRNGTSDQP
Ga0182040_111250221	3300016387	Soil	ADPQVQKGVEAVPQARALYQNARKIVAQRAGGGVDQP
Ga0187818_104447981	3300017823	Freshwater Sediment	DPQVQKAVEALPEARALYQNARKIVAQRMGGSFNQP
Ga0187824_102958101	3300017927	Freshwater Sediment	QVQKAVEAIPQARALYENARKIVAQRSGSNVHFNQP
Ga0187825_104055712	3300017930	Freshwater Sediment	PQVQKAVEAIPQARALYQNARKIVAQRTGATFDQP
Ga0187803_102618861	3300017934	Freshwater Sediment	PQVQKAVEAIPQARALYENARKVVAQRSGGSPDQP
Ga0187817_110195112	3300017955	Freshwater Sediment	FKVLLEADPQVQRAVDAVPQARALYENARKIIALRNGSTAHFNQP
Ga0187777_101826871	3300017974	Tropical Peatland	EGLKVLLEADPQVQAAVDAIPKARALYQNAKKIIAQRSGSAVEQP
Ga0187886_11775721	3300018018	Peatland	DPQVQKAIEAIPQARALYENARKIVAQRAGASPDQP
Ga0187869_104904162	3300018030	Peatland	LEADPQVQKAIEAIPQARALYENARKVVAQRTGASPDQP
Ga0187784_109758602	3300018062	Tropical Peatland	FKVLLDADPQVQKAIDAVPQARALYENARKVVAQKSGSNIRFNQP
Ga0187771_109037601	3300018088	Tropical Peatland	PQVQKAIEAVPQARALYQNARRIVAQRSGASPDQP
Ga0066669_101578711	3300018482	Grasslands Soil	LEGDPQVQKAVEAVPQARALYQNAHKIMAQRMGGSVDQP
Ga0193726_12456022	3300020021	Soil	AAAPQDQKAVEATPQARALYQNARKIVAQRTGGSIDQP
Ga0210407_108321891	3300020579	Soil	AADPQVQKAVESIPQARALYENARKVVAQRSGSGHDQP
Ga0210403_107185021	3300020580	Soil	LKVLLEADPQVQKAVEAIPQARALYQNAKKIVAQRAGGAIDQP
Ga0210403_110100371	3300020580	Soil	KVLLEADPQVQKAVDTIPQARTLYENARKIVAQRTGGSFEHP
Ga0210404_100358001	3300021088	Soil	DPQVQKAVEAIPQARALYENARKIVAQRAGLTSNQP
Ga0210400_101799211	3300021170	Soil	LEADPQVQKAVDSIPQARALYENARKVVAQRMGNTPDQP
Ga0210385_102601803	3300021402	Soil	DPQVQKAVDSIPQARALYENARKIVAQRMGGNAPDQP
Ga0210397_114663562	3300021403	Soil	VLLAADPQVQKAVDSIPQARALYENARKVVAQRNGSNHDQP
Ga0210384_105879461	3300021432	Soil	DPQVQKAVESIPQARALYENARKIVAQRNGSGHDQP
Ga0210391_114146311	3300021433	Soil	EADPQVQKAVDSIPQARALYENARKVVAQRMGNTPDQP
Ga0210390_112339151	3300021474	Soil	DPQVQKAVDSIPQARALYENARRIVAQRMGNTPDQP
Ga0242654_103158971	3300022726	Soil	GDKVLLAADPQVQKAIESIPQARALYENARKVVAQRNGSGHDQP
Ga0209236_10046739	3300026298	Grasslands Soil	VLLEADPQVQKAVEVIPQARALYQNARKIIAQRMGESVDQP
Ga0209236_11176833	3300026298	Grasslands Soil	PDSVKVELEADPQVQKAVESIPQARALYENVRKVIAQRSGEPVSKP
Ga0209239_11924551	3300026310	Grasslands Soil	PQVQKAVEAIPQARALYQNAKKIVAQRAGNSIERP
Ga0209154_10469911	3300026317	Soil	DPQVQKAVEAVPQARALYQNAHKIMAQRMGGSADRPY
Ga0209160_11278393	3300026532	Soil	LLEADPQVQKAVEAIPQARALYQNAKKIVAQRAGGTIEQP
Ga0209388_10056863	3300027655	Vadose Zone Soil	EADPQVQKAVEAIPQARALYETARKIVAQRAGLTPDQP
Ga0209626_10460193	3300027684	Forest Soil	VLLEADPQVQKAVEAIPQARALYQNAKKIVAQRAGGPVEQP
Ga0209447_100037019	3300027701	Bog Forest Soil	PQVMKAIEAIPQARALYQNARKVVAQRTSGSLDQP
Ga0209038_101282861	3300027737	Bog Forest Soil	ELEADRQVQASIEAVPQARALYENARKIMADRQGMTTFRP
Ga0209772_101533071	3300027768	Bog Forest Soil	ESVLLLADPQVEKAAESVPQARALYQNARKIVAQRSGGNTLEQP
Ga0209074_103976632	3300027787	Agricultural Soil	ESDPQVQKAVEAIPQARALYENARKIVAQRAGLRQDRP
Ga0209656_104889431	3300027812	Bog Forest Soil	QVEKAAESVPQARALYQNARKIVAQRTGTPTLDQP
Ga0209039_100441763	3300027825	Bog Forest Soil	ILLEADPQVQKAIEAIPQARALYENARKVVAQRSGATPDQP
Ga0209039_101793502	3300027825	Bog Forest Soil	ILLEADPQVQKAIEAIPQARALYENARKVVAQRAGASPDQP
Ga0209283_100662171	3300027875	Vadose Zone Soil	VELEADPQVQKAVDSIPQARALYENVRKVIAQRSGEPVSKP
Ga0209068_103387991	3300027894	Watersheds	LLEADPQVQAAVDAIPQARALYQNVKKIIAQRSGAAVEQP
Ga0209526_102913773	3300028047	Forest Soil	LLEADPQVQKAVDAIPQARALYQNARKIVAQRTGTPIDQP
Ga0138301_18900691	3300031022	Soil	PQVQKAVDSIPQARALYQNARKIVAQRTGAPIDQP
Ga0170822_140578701	3300031122	Forest Soil	GLLEADPQLQKGIEAMPQARALYQNARKIVAQRAGAGSDQP
Ga0170824_1190132902	3300031231	Forest Soil	LEADPQVQKAVEALPQARALYENARKVVAQRNGGGSDQP
Ga0306917_111215721	3300031719	Soil	ADPQVQKGVEAVPQARALYQNARKIVAQRAGGSVDQP
Ga0307469_123755152	3300031720	Hardwood Forest Soil	VLLAADPQVQKAVESIPQARALYENARKVVAQRSGSGHDQP
Ga0306918_113416251	3300031744	Soil	FKVLLEADPQVQRAIEAVPQARALYENARKVVAQGNAATSHFKQP
Ga0307477_100591291	3300031753	Hardwood Forest Soil	EADPQVQKAVEAIPQARALYQNARKIVAQRMGGSFDQP
Ga0307475_102434371	3300031754	Hardwood Forest Soil	DPQVQKAVEAIPQARALYENARKIVAQRAGVTPDQP
Ga0307475_112916631	3300031754	Hardwood Forest Soil	LLEADPQVQKAVEAIPQARALYQNAKRIVAQRAGGTIEQP
Ga0307478_100973935	3300031823	Hardwood Forest Soil	PQVQAAVEAIPQARALYENARKIVAQRSGGANDQP
Ga0307479_109156641	3300031962	Hardwood Forest Soil	DPQVQKAVEAIPQARALYENARKIVAQRAGITPNQP
Ga0318524_106623052	3300032067	Soil	ADPQVQKAIESIPQARALYENARKVVAQRNGADHDQP
Ga0335081_106375001	3300032892	Soil	LKVLVEADPQVDKAIESIPQARALYQNARKIIAQRNGGASPDQP
Ga0335069_126705431	3300032893	Soil	EADPQVQKAMEAIPQARALYENARKVVAQRAGNTAHLNQP
Ga0335071_120230031	3300032897	Soil	LLSSDPQVQKAIESVPQARALYENARKVVAQRNGAGPDQP
Ga0335077_113640472	3300033158	Soil	LLEADPQVQKAVEALPQARALYENARKVVAQRSGGGADQP
Ga0310914_116687241	3300033289	Soil	DPQVQKAIESIPQARALYENARKVVAQRNGADHDQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097991

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences