Metagenome Family F097984

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097984
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	60 residues
Representative Sequence	MQKTHDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAATLGEPPDIGKKPPQIDE
Number of Associated Samples	75
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.58 %
% of genes near scaffold ends (potentially truncated)	19.23 %
% of genes from short scaffolds (< 2000 bps)	88.46 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.500 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (14.423 % of family members)
Environment Ontology (ENVO)	Unclassified (37.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.82
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.82
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SCOP family	SCOP domain	Representative PDB	TM-score
f.72.1.1: Double antiporter-like subunits from respiratory complex I	d3rkoc_	3rko	0.79062
a.246.1.1: Hyaluronidase post-catalytic domain-like	d2v5ca3	2v5c	0.78584
a.118.8.0: automated matches	d5mjza_	5mjz	0.77107
a.118.8.0: automated matches	d6kp3a_	6kp3	0.7707
a.215.1.1: A middle domain of Talin 1	d1sj7a1	1sj7	0.76778

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04392	ABC_sub_bind	6.73
PF04226	Transgly_assoc	1.92
PF00550	PP-binding	0.96
PF00486	Trans_reg_C	0.96
PF13676	TIR_2	0.96
PF00582	Usp	0.96
PF09458	H_lectin	0.96
PF13302	Acetyltransf_3	0.96
PF00982	Glyco_transf_20	0.96
PF09926	DUF2158	0.96
PF01425	Amidase	0.96
PF03466	LysR_substrate	0.96
PF01464	SLT	0.96
PF07681	DoxX	0.96
PF02518	HATPase_c	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.73
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.92
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.96
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.96
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
All Organisms	root	All Organisms	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
cellular organisms	root	All Organisms → cellular organisms	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.38 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.85 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.96 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.96 %
Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12	0.96 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.96 %
Pleomorphomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.96 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	0.96 %
Kaistia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	0.96 %
Pleomorphomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Pleomorphomonas	0.96 %
Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Rhodoplanes roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	0.96 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.96 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.96 %
Kaistia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	0.96 %
Pleomorphomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Pleomorphomonas	0.96 %
Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	0.96 %
Rhodoplanes roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	0.96 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.96 %
Kaistia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	0.96 %
Pleomorphomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Pleomorphomonas	0.96 %
Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10225210	Not Available	755	Open in IMG/M
3300001867\|JGI12627J18819_10423525	Not Available	543	Open in IMG/M
3300003505\|JGIcombinedJ51221_10383576	Not Available	571	Open in IMG/M
3300004633\|Ga0066395_10650982	Not Available	622	Open in IMG/M
3300005178\|Ga0066688_10638448	Not Available	683	Open in IMG/M
3300005332\|Ga0066388_100277635	All Organisms → cellular organisms → Bacteria → Proteobacteria	2318	Open in IMG/M
3300005332\|Ga0066388_101713775	Not Available	1113	Open in IMG/M
3300005332\|Ga0066388_102304573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	974	Open in IMG/M
3300005332\|Ga0066388_103266504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	828	Open in IMG/M
3300005332\|Ga0066388_103602584	Not Available	790	Open in IMG/M
3300005332\|Ga0066388_104774536	Not Available	689	Open in IMG/M
3300005435\|Ga0070714_102367738	Not Available	516	Open in IMG/M
3300005437\|Ga0070710_10682946	Not Available	723	Open in IMG/M
3300005439\|Ga0070711_100628621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	898	Open in IMG/M
3300005560\|Ga0066670_10106477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1579	Open in IMG/M
3300005764\|Ga0066903_100153746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3314	Open in IMG/M
3300005764\|Ga0066903_100807390	All Organisms → cellular organisms → Bacteria → Proteobacteria	1679	Open in IMG/M
3300005764\|Ga0066903_101523982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1263	Open in IMG/M
3300005764\|Ga0066903_102209531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1061	Open in IMG/M
3300005764\|Ga0066903_104783801	Not Available	720	Open in IMG/M
3300005764\|Ga0066903_108017594	Not Available	542	Open in IMG/M
3300006041\|Ga0075023_100068201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1160	Open in IMG/M
3300006046\|Ga0066652_100154934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1926	Open in IMG/M
3300006052\|Ga0075029_100092100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1810	Open in IMG/M
3300006052\|Ga0075029_100744155	Not Available	664	Open in IMG/M
3300006052\|Ga0075029_101071197	Not Available	559	Open in IMG/M
3300006057\|Ga0075026_100922516	Not Available	538	Open in IMG/M
3300006086\|Ga0075019_10775078	Not Available	610	Open in IMG/M
3300006172\|Ga0075018_10194644	Not Available	958	Open in IMG/M
3300006174\|Ga0075014_100021385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2486	Open in IMG/M
3300006174\|Ga0075014_100323246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	820	Open in IMG/M
3300006175\|Ga0070712_101078288	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300006176\|Ga0070765_100757660	Not Available	917	Open in IMG/M
3300006755\|Ga0079222_10261594	Not Available	1097	Open in IMG/M
3300006804\|Ga0079221_10844829	Not Available	663	Open in IMG/M
3300006806\|Ga0079220_10153330	Not Available	1274	Open in IMG/M
3300010047\|Ga0126382_11811470	Not Available	574	Open in IMG/M
3300010359\|Ga0126376_13239954	Not Available	503	Open in IMG/M
3300010361\|Ga0126378_11541645	Not Available	754	Open in IMG/M
3300010373\|Ga0134128_11599162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12	717	Open in IMG/M
3300010376\|Ga0126381_101861547	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300010398\|Ga0126383_10020875	Not Available	5017	Open in IMG/M
3300010863\|Ga0124850_1003031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5025	Open in IMG/M
3300012198\|Ga0137364_10527269	Not Available	888	Open in IMG/M
3300012200\|Ga0137382_11340744	Not Available	504	Open in IMG/M
3300012948\|Ga0126375_11422346	Not Available	589	Open in IMG/M
3300015357\|Ga0134072_10267131	Not Available	623	Open in IMG/M
3300015371\|Ga0132258_10352402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3640	Open in IMG/M
3300016341\|Ga0182035_10500437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1037	Open in IMG/M
3300016341\|Ga0182035_11023827	Not Available	733	Open in IMG/M
3300016371\|Ga0182034_10400904	Not Available	1125	Open in IMG/M
3300017822\|Ga0187802_10046190	All Organisms → cellular organisms → Bacteria → Proteobacteria	1584	Open in IMG/M
3300017822\|Ga0187802_10060858	Not Available	1391	Open in IMG/M
3300017822\|Ga0187802_10240108	Not Available	700	Open in IMG/M
3300017823\|Ga0187818_10161872	Not Available	975	Open in IMG/M
3300017823\|Ga0187818_10527253	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300017924\|Ga0187820_1066693	Not Available	995	Open in IMG/M
3300017930\|Ga0187825_10066948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1224	Open in IMG/M
3300017932\|Ga0187814_10274600	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300017936\|Ga0187821_10133570	Not Available	930	Open in IMG/M
3300017943\|Ga0187819_10446633	Not Available	740	Open in IMG/M
3300017955\|Ga0187817_10772495	Not Available	613	Open in IMG/M
3300018001\|Ga0187815_10229366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	786	Open in IMG/M
3300018001\|Ga0187815_10235021	Not Available	775	Open in IMG/M
3300018086\|Ga0187769_10019318	All Organisms → cellular organisms → Bacteria → Proteobacteria	4500	Open in IMG/M
3300018086\|Ga0187769_10527762	Not Available	891	Open in IMG/M
3300018482\|Ga0066669_12011006	Not Available	542	Open in IMG/M
3300019888\|Ga0193751_1006890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6238	Open in IMG/M
3300020580\|Ga0210403_10772978	Not Available	765	Open in IMG/M
3300020581\|Ga0210399_10659651	Not Available	862	Open in IMG/M
3300020581\|Ga0210399_10817174	Not Available	760	Open in IMG/M
3300021168\|Ga0210406_10321556	Not Available	1254	Open in IMG/M
3300021168\|Ga0210406_10420696	Not Available	1068	Open in IMG/M
3300021420\|Ga0210394_11764256	Not Available	517	Open in IMG/M
3300021560\|Ga0126371_10550802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1302	Open in IMG/M
3300021560\|Ga0126371_12447381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Pleomorphomonas	632	Open in IMG/M
3300022557\|Ga0212123_10016548	All Organisms → cellular organisms → Bacteria	8988	Open in IMG/M
3300025928\|Ga0207700_10468532	Not Available	1112	Open in IMG/M
3300026552\|Ga0209577_10089954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2508	Open in IMG/M
3300027548\|Ga0209523_1124159	Not Available	533	Open in IMG/M
3300027680\|Ga0207826_1019309	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300027698\|Ga0209446_1155310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	591	Open in IMG/M
3300027915\|Ga0209069_10316838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	833	Open in IMG/M
3300031231\|Ga0170824_106116165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	2340	Open in IMG/M
3300031231\|Ga0170824_118726893	Not Available	743	Open in IMG/M
3300031231\|Ga0170824_119256455	Not Available	904	Open in IMG/M
3300031543\|Ga0318516_10812620	Not Available	528	Open in IMG/M
3300031573\|Ga0310915_10379511	Not Available	1003	Open in IMG/M
3300031573\|Ga0310915_11022284	Not Available	576	Open in IMG/M
3300031718\|Ga0307474_10896984	Not Available	702	Open in IMG/M
3300031719\|Ga0306917_10528237	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300031724\|Ga0318500_10409727	Not Available	675	Open in IMG/M
3300031753\|Ga0307477_10271569	Not Available	1173	Open in IMG/M
3300031753\|Ga0307477_10390516	Not Available	954	Open in IMG/M
3300031753\|Ga0307477_10421689	Not Available	912	Open in IMG/M
3300031754\|Ga0307475_10564631	Not Available	912	Open in IMG/M
3300031754\|Ga0307475_11220466	Not Available	585	Open in IMG/M
3300031890\|Ga0306925_11759672	Not Available	595	Open in IMG/M
3300031910\|Ga0306923_10427308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1505	Open in IMG/M
3300031912\|Ga0306921_10074949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3889	Open in IMG/M
3300031947\|Ga0310909_10620576	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300032001\|Ga0306922_12340611	Not Available	511	Open in IMG/M
3300032076\|Ga0306924_11010786	Not Available	912	Open in IMG/M
3300032180\|Ga0307471_100300314	Not Available	1692	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.04%
Host-Associated	Host-Associated	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.00%
Aquatic	Environmental → Aquatic	24.04%
Plants	Host-Associated → Plants	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.00%
Freshwater	Environmental → Aquatic → Freshwater	13.46%
Sediment	Environmental → Aquatic → Sediment	9.62%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.04%
Loam	Environmental → Terrestrial → Soil → Loam	24.04%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.23%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	12.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.96%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.42%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.58%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_102252102	3300001867	Forest Soil	MQKTHDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAATLGEPPDIGKKPPQIDEA*
JGI12627J18819_104235251	3300001867	Forest Soil	MQTYDELAKLALFCANQARIRYSIKDAAREAWRLAVEYRGQAAKLGDAPDIGDRPPRVEET*
JGIcombinedJ51221_103835761	3300003505	Forest Soil	MLSYDELVKLARFCANQARTATEKVVRARAWRLAVQYREDAAKLGEPPDIAEIPSDSEKV
Ga0066395_106509822	3300004633	Tropical Forest Soil	MATYEALVKLALFCANQARTSVMKDAAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDEAVAKAG*
Ga0066688_106384482	3300005178	Soil	MATYETFVKLALFCANQARTAVMKDAAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDETVAQPVAKAG*
Ga0066388_1002776353	3300005332	Tropical Forest Soil	MNNNYDELAKLTLFCAKQARTSLFKEAAREAWRLAVEYQRQAAKFGEPPDIGDKPRHVVRGSVAGRA*
Ga0066388_1017137753	3300005332	Tropical Forest Soil	MLPYNELVKLARFCANQARTSTEKDVRSRAWRLAVQYREDAAKLGEPPDIGEIPSDLENA
Ga0066388_1023045731	3300005332	Tropical Forest Soil	MATYEALVKLALFCANQARTSVMKDAAREAWRLAVEYQCQAANLGEPPDLGRKPRHIDEAVAKAG*
Ga0066388_1032665043	3300005332	Tropical Forest Soil	QLSRRGTMQTYDAMVKLALFCANQARTSVMKDVAREAWRLAVEYRDQAANLGDPPNIGKKPPHVDEA*
Ga0066388_1036025841	3300005332	Tropical Forest Soil	MQKNYDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAATLGEPPDIGKKPPDAAT
Ga0066388_1047745363	3300005332	Tropical Forest Soil	KLALFCANQARTSVMKDAAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDEAVAKAG*
Ga0070714_1023677381	3300005435	Agricultural Soil	MQKTHDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAAQLGEPPDIGKKPSQINEG*
Ga0070710_106829462	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MLPYEELVKLARFCADQARTASEKDVRSRAWRLAVQYREDAAKLGKPPDIGEAPSDLEKA
Ga0070711_1006286213	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEKTHDALVKLALFCANQARTNTMKDAAREAWRLAVEYRDQAAKLGEPPDIGKKPPQIDEA*
Ga0066670_101064772	3300005560	Soil	MPTHEALVKLALFCANQARTSVMKDAAREAWRLAVEYRDKAAKLGEPPNIGEKPRNI*
Ga0066903_1001537463	3300005764	Tropical Forest Soil	MRKTHDALVKLALFCANQARTNTMKDAAREAWRLAVEYRDQAAKLGEPPDIGKKPPRIDES*
Ga0066903_1008073902	3300005764	Tropical Forest Soil	MNNNYDELAKLALFCAKQARTSLFKEAAREAWRLAVEYQRQAAKFGEPPDIGDKPRHVVRGSVAGRA*
Ga0066903_1015239823	3300005764	Tropical Forest Soil	MQKTYDALVKLTLFCANQARTSTMKDAAREAWRLAVEYRDQAAELGEPPDIGKKPPRIDEA*
Ga0066903_1022095312	3300005764	Tropical Forest Soil	MEHTYEALFKLALFCANQARTSVIKDAAREAWRLAVEYRDQAAKLGEPPNIGDKPRHI*
Ga0066903_1047838011	3300005764	Tropical Forest Soil	MDNDYDELVKLALFCANQARTSMFKEAAREAWRLAVEYQQQAGKLGELPDIGDKPRR*
Ga0066903_1080175941	3300005764	Tropical Forest Soil	MLPYDELVKLARFCANQARTTTEKEVADRAWHLAVQYRDDAAKLGEPPDIGEKPPRLTGLTQ*
Ga0075023_1000682011	3300006041	Watersheds	MQKNYDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAAKLGEPPNIGKKPPQVDEA*
Ga0066652_1001549342	3300006046	Soil	LFERGFGAWSCPETHEALVKLALFCANQARTSVMKDAAREAWRLAVEYRDKAAKLGEPPNIGEKPRNI*
Ga0075029_1000921002	3300006052	Watersheds	MQKTYEALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAAGLGEPPDIGKKPPHV*
Ga0075029_1007441552	3300006052	Watersheds	MQKTHDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAAKLGEPPNIGKKPPQVDEA*
Ga0075029_1010711972	3300006052	Watersheds	MQTYDELAKLALFCANQARISYSMKDAAREAWRLAVEYQGQAAKLGDAPN
Ga0075026_1009225161	3300006057	Watersheds	MQTYEELVKLALFVPIKHAQARMKVAGREAWRLAVEYQEEAAKLGEPPDIGKATPHLKPSAG
Ga0075019_107750782	3300006086	Watersheds	MQKTHDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAAGLGEPPDIGKKPPHV*
Ga0075018_101946441	3300006172	Watersheds	MQKTHDALVKLALFCANQARTSVMKDAAREAWRLAVEYRDQAAKLGEPP
Ga0075014_1000213851	3300006174	Watersheds	MQKTHDALVKLALFCANQAHTSTMKDAAREAWRLAVEYRDQAAKLGEPPNIGKKPPQVDEA*
Ga0075014_1003232462	3300006174	Watersheds	MQKDYDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAAGLGEPPDIGKKPPHV*
Ga0070712_1010782881	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLAYDELVKLARFCANQARTTTEKDVASRAWRLAVQYREDAAKIGEPPDIGEKPPHVAET
Ga0070765_1007576602	3300006176	Soil	MQKTHDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAAKLGEPPDIGKKRPQIDEA*
Ga0079222_102615944	3300006755	Agricultural Soil	MEKTYGALVKLALFCANQARINRMKDAAREASRLAVEYRDQAATLGEPPDIGKKP
Ga0079221_108448291	3300006804	Agricultural Soil	MATYEALVKLALFCANQARTSVMKDAAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDEAVA*
Ga0079220_101533302	3300006806	Agricultural Soil	MEKTYGALVKLALFCANQARTSVMKDAAREAWRLAVEYRDQAAKLGEPPDIGKKPPQIDEA*
Ga0126382_118114701	3300010047	Tropical Forest Soil	MQKTHDALAKLALFCANQARTSTMKDVAREAWRLAVKYRDQAAKLGEPPDIGK
Ga0126376_132399542	3300010359	Tropical Forest Soil	MATYEALVKLALFCANQARTSVMKDVAREAWRLAVEYQCQAANLGEPPDLGRKPRHIDEAVAKAG*
Ga0126378_115416452	3300010361	Tropical Forest Soil	MEHTYEALVKLALFCANQARTSVIKDAAREAWRLAVEYRDQAAKLGEPPNIGDKPRHI*
Ga0134128_115991621	3300010373	Terrestrial Soil	MEHTYEALVKLALFCTNQARTSVMKDAAREAWRLAVEYRDQAGKLGEPPNIGEKPRHI*
Ga0126381_1018615471	3300010376	Tropical Forest Soil	MATYEALVKLALFCANQARTSVMKDAAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDEAVAQPVAKAG*
Ga0126383_100208755	3300010398	Tropical Forest Soil	MQKTHDALAKLALFCANQARTSTMKDVAREAWRLAVKYRDQAAKLGEPPDIGKRPPHVEEV*
Ga0124850_10030317	3300010863	Tropical Forest Soil	MATYEALVKLALFCANQARTSVMKDAAREAWRLAVEYQFQAANLGEPPDLGRKPRHIDEAVAKPADFLESW*
Ga0137364_105272691	3300012198	Vadose Zone Soil	MQKTYDALVKLALFCANQAHTSTMKDAAREAWRLAVEYQDQAAELGEPPDIGKKPPQIDEA*
Ga0137382_113407442	3300012200	Vadose Zone Soil	VQALPEGRGNQKTYDALVKLALFCANQARTSTMKDAARQAWRLAVEYQDQAAELGEPPDIGKKPPQIDEA*
Ga0126375_114223462	3300012948	Tropical Forest Soil	MLPYEELVKLALFCANQARTANEKDVCSRAWRLAVQYRDDAAKLGEPPDIGEAPS
Ga0134072_102671311	3300015357	Grasslands Soil	ALVKLALFCANQARTSVMKDAAREAWRLAVEYRDKAAKLGEPPNIGEKQRNI*
Ga0132258_103524027	3300015371	Arabidopsis Rhizosphere	MQKTHEALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAAQLGEAPDIGKKPPQINEG*
Ga0182035_105004372	3300016341	Soil	MQTYDAMVKLALFCANQARISVMKDVAREAWRLAVEYRDQAANLGDPPNIGMKPPHVDEA
Ga0182035_110238272	3300016341	Soil	MLPYDELVKLARFCANQARTTTEKEVANRAWRLAVQYRDDAAKLGEPPDIGEKPPEPAA
Ga0182034_104009042	3300016371	Soil	MQTYDAMVKLALFCANQARTSVMKDVAREAWRLAVEYRDHAANLGEPPNIGKKPPHVDEA
Ga0187802_100461902	3300017822	Freshwater Sediment	MLSYDELVKLARFCANQARTATEKVVRARAWRLAVQYREDAAKLGEPPDIGEIPSDSEKV
Ga0187802_100608581	3300017822	Freshwater Sediment	MLQYNELVKLARFCADQARTSTEKDVASRAWRLAVQYREDAARLGEPPDICVKPPHLEEV
Ga0187802_102401081	3300017822	Freshwater Sediment	MQTYDELAKLALFCANQARISYSMKDAAREAWRLAVEYQGQAAKLGDAPNIGEKPPRVEE
Ga0187818_101618721	3300017823	Freshwater Sediment	MLQYNELVKLARFCADQARTSTEKDVASRAWRLAVQYREDAARLGEPPDIGVKPPHLEEV
Ga0187818_105272531	3300017823	Freshwater Sediment	MLSYDELVKLARFCANQARTATEKVVRARAWRLAVQYREDAAKLGEPPDIGEIPSDS
Ga0187820_10666932	3300017924	Freshwater Sediment	MLQYNELVKLARFCADQARTSTEKDVASRAWRLALQYREDAARLGEPPDIGVKPPHLEEV
Ga0187825_100669483	3300017930	Freshwater Sediment	MLQYNELVKLARFCADQARTSTEKDVASRAWRLAVQYREDAARLGEPPDIGVKPSHLEEV
Ga0187814_102746002	3300017932	Freshwater Sediment	MLSYDELVKLARFCANEARTATEKVVRARAWRLAVQYREDAAKLGEPPDIGEIPSD
Ga0187821_101335701	3300017936	Freshwater Sediment	MLQYNELVKLARFCADQARTSTEKVVASRAWRLAVQYREDAARLGEPPDIGVKPPHLEEV
Ga0187819_104466331	3300017943	Freshwater Sediment	ELVKLARFCADQARTSTEKDVASRAWRLALQYREDAARLGEPPDIGVKPPHLEEV
Ga0187817_107724952	3300017955	Freshwater Sediment	MKTYDELVKLALFCANQARTSLVKGVAREAWRLAVEYRDQAAALGEPPNIGERPRHVDEG
Ga0187815_102293662	3300018001	Freshwater Sediment	MLQYNELVKLARFCADQARTSTEKDVASRAWRLAVQYREDAARLGEPPDIGVKP
Ga0187815_102350211	3300018001	Freshwater Sediment	LPPERAMKTYDELVRLALFCANQARTSLMKGVAREARLAVEYRDQAAALGEPPNIGERPRHV
Ga0187769_100193184	3300018086	Tropical Peatland	MKAYDELVRLALFCANQARTSLMKGVAREAWRLAVEYRDQAAKLGEPPNIGEKPRRVDEA
Ga0187769_105277622	3300018086	Tropical Peatland	MQKNYDALVKLALFCANQARTSSMKDGAREAWRLAAEYRDQAATLGEPPDIGKKPPHIDE
Ga0066669_120110061	3300018482	Grasslands Soil	MELPEGGAMPTHEALVKLALFCANQARTSVMKDAAREAWRLAVEYRDKAAKLGEPPNIGEKPRNI
Ga0193751_10068907	3300019888	Soil	MQTYDELAKLALFCANQARTGSMKSAVREAWRLAVEYRGQAEKLGEPPSIGQKPPRVEGA
Ga0210403_107729782	3300020580	Soil	LVKLALFCANQARTSTIKDAAQEAWRLAVEYRDQAAKLGEPPDIGKKPPQIDEA
Ga0210399_106596511	3300020581	Soil	MLPYEELVKLARFCADQARTASEKDVRSRAWRLAVQYREDAAKVGEPPDIGEIPSDLKNA
Ga0210399_108171742	3300020581	Soil	MQKTHDALVKLALFCANQARTNTMKDAAREAWRLAVEYRDQAAKLGEPPDIGKKRPQIDE
Ga0210406_103215562	3300021168	Soil	MLPYEELVKLARFCADQARTASEKDVRSRAWRLAVQYREDAAKVGEPPDIGEIPSDLENAEASLR
Ga0210406_104206962	3300021168	Soil	MEKTHDALVKLALFCANQARTNTMKDAAREAWRLAVEYRDQAAKLGEPPDIGKKAASNRRSVSPRL
Ga0210394_117642561	3300021420	Soil	MLSYDELVKLARFCANQARTATEKVVRARAWRLAVQYREDAAKVGEPPDIGEIPSDLENA
Ga0126371_105508022	3300021560	Tropical Forest Soil	MEHTYEALVKLALFCANQARTSVIKDAAREAWRLAVEYRDQAAKLGEPPNIGDKPRHI
Ga0126371_124473813	3300021560	Tropical Forest Soil	MATYEALVKLALFCANQARTSVMKDAAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDEAVAKAG
Ga0212123_100165486	3300022557	Iron-Sulfur Acid Spring	MQTHDELAKLALFCANQARTGSMKSAVREAWRLAVEYRGQAEKLGEPPSIGQKPPRVEGA
Ga0207700_104685323	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLPYEELVKLARFCADQARTASEKDVRSRAWRLAVQYREDAAKVGEPPDIGEIPSDLENA
Ga0209577_100899542	3300026552	Soil	MATYETFVKLALFCANQARTAVMKDAAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDETVAQPVAKAG
Ga0209523_11241591	3300027548	Forest Soil	MQKTHDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAATLGEPPDIGKKPPQIDE
Ga0207826_10193091	3300027680	Tropical Forest Soil	MLPYDELVKLARFCANQARTTTEKEVADRAWHLAVQYRDDAAKLGEPPDIGEKPPGPAA
Ga0209446_11553101	3300027698	Bog Forest Soil	MLQYNELVKLARFCADQARTSTEKDVASRAWRLAVQYREDAARLGEPPDIGVKPSHLEE
Ga0209069_103168382	3300027915	Watersheds	MQKTHDALVKLALFCANQARTSTMKDAAREAWRLAVEYRDQAATLGEPPDIGKKPPHV
Ga0170824_1061161653	3300031231	Forest Soil	MLSHDELVKLARFCANQARTATEKVVRARAWRLAVQYREDAAKLGEPPDIGEIPSDSEKV
Ga0170824_1187268931	3300031231	Forest Soil	MQTYEELVKLALFCANQARTGRMKVAGREAWRLAVEYQEEAAKLGEPPDIGKKPPHI
Ga0170824_1192564552	3300031231	Forest Soil	MQKTHEALVKLALFCANQARTSVMKDAAREAWRLAIEYRDQAAKLGEPPDIGKKPPHVDK
Ga0318516_108126201	3300031543	Soil	MLPYDELVKLARFCANQARTTTEKEVANRAWHLAVQYRDDAAKLGEPPDIGEKPPGLTG
Ga0310915_103795112	3300031573	Soil	MLPYDELVKLARFCANQARTTTEKEVADRAWHLAVQYRDDAAKLGEPPDIGEKPPGLTG
Ga0310915_110222841	3300031573	Soil	MQTYDAMVKLALFCANQARTSVMKNVAREAWRLAVEYRDQAANLGDPPNIGMKPPHVDEA
Ga0307474_108969841	3300031718	Hardwood Forest Soil	MQKTHDALLKLALFCANQARISTMKDAGREAWRLAVEYRDQAAKLGEPPDIGKKPPQIDE
Ga0306917_105282372	3300031719	Soil	LALFCANQARTSVMKDAAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDEAVAKAG
Ga0318500_104097271	3300031724	Soil	MATYEALVKLALFCANQARTSVMKDPAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDEAVAKAG
Ga0307477_102715692	3300031753	Hardwood Forest Soil	MEKTHDALVKLALFCANQARTNTMKDAAREPWRLAVEYRDQAAKLGEPPDIGKKAASNRRSVSPRL
Ga0307477_103905161	3300031753	Hardwood Forest Soil	MATYEALVKLALFCANQARTSVMKDAAREAWRLAVEYQGQAANLGEPPDLGRKPRHIDEAVAQAVAKAG
Ga0307477_104216892	3300031753	Hardwood Forest Soil	MQKTHDALVKLARFCANQARTSTMKDAAREAWRLAVEYRDQAATLGEPPDIGKKPPQIDE
Ga0307475_105646312	3300031754	Hardwood Forest Soil	MQKTHDALVKLALFCAIQARTSVLKDAAREAWRLAVEYRDQAAKLGEPPDIGKKPPHV
Ga0307475_112204661	3300031754	Hardwood Forest Soil	MQTYDELAKLALFCANQARIRYSIKDAAREAWRLAVEYRGQAAKLGDAPDIGDRPPRVEE
Ga0306925_117596722	3300031890	Soil	MLPYDELVKLARFCANQARTTTEKEVANRAWHLAVQYRDDAAKLGEPPDIGEKPPEPAA
Ga0306923_104273082	3300031910	Soil	MLPYDELVKLARFCANQARTTTEKEVADRAWRLAVQYRDDAAKLGEPPDIGEKPPGLTG
Ga0306921_100749497	3300031912	Soil	MQTYDAIVKLALFCANQARTSVMKDAAREAWRLAIEYRDQAANLGEPPNRLILARSRPM
Ga0310909_106205761	3300031947	Soil	MLPYDELVKLARFCANQARTTTEKEVADRAWHLAVQYRDDAAKLGEPPDIGEKPPGL
Ga0306922_123406111	3300032001	Soil	VQTYDAMVKLALFCANQARTSVMKDVAREAWRLAVEYRDHAANLGEPPNIGKKPPHVDEA
Ga0306924_110107862	3300032076	Soil	MQTYDAIVKLALFCANQARTSVMKDAAREAWRLAVEYRDQAANLGDPPNIGMKPPHVDEA
Ga0307471_1003003143	3300032180	Hardwood Forest Soil	MQKTHDALVKLALFCANQARTNRMKDAAREAWRLAVEYRDQAATLGEPPDIGKKPPQIDE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097984

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences