Metagenome / Metatranscriptome Family F097920

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097920
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	60 residues
Representative Sequence	RLVIPMHYRTEAVNFLDPPDEFLAALGARVERLDESELEAEQLLGTAEDPTVALLAPPS
Number of Associated Samples	96
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.92 %
% of genes near scaffold ends (potentially truncated)	85.58 %
% of genes from short scaffolds (< 2000 bps)	91.35 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.269 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (14.423 % of family members)
Environment Ontology (ENVO)	Unclassified (26.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.308 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.49% β-sheet: 10.34% Coil/Unstructured: 78.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00578	AhpC-TSA	23.08
PF00266	Aminotran_5	12.50
PF13462	Thioredoxin_4	8.65
PF01035	DNA_binding_1	3.85
PF02566	OsmC	3.85
PF12680	SnoaL_2	2.88
PF00313	CSD	2.88
PF14470	bPH_3	1.92
PF07690	MFS_1	1.92
PF07883	Cupin_2	1.92
PF03640	Lipoprotein_15	1.92
PF12695	Abhydrolase_5	1.92
PF00196	GerE	1.92
PF01197	Ribosomal_L31	0.96
PF13411	MerR_1	0.96
PF00689	Cation_ATPase_C	0.96
PF03006	HlyIII	0.96
PF02574	S-methyl_trans	0.96
PF01613	Flavin_Reduct	0.96
PF03704	BTAD	0.96
PF01939	NucS	0.96
PF13668	Ferritin_2	0.96
PF00528	BPD_transp_1	0.96
PF13189	Cytidylate_kin2	0.96
PF00230	MIP	0.96
PF00970	FAD_binding_6	0.96
PF03459	TOBE	0.96
PF07681	DoxX	0.96
PF00440	TetR_N	0.96
PF04263	TPK_catalytic	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	3.85
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	3.85
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	3.85
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	3.85
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	1.92
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	0.96
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.96
COG1637	Endonuclease NucS, RecB family	Replication, recombination and repair [L]	0.96
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.96
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.96
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.96
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.96
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.96
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.96
COG0254	Ribosomal protein L31	Translation, ribosomal structure and biogenesis [J]	0.96
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.96
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.12 %
Unclassified	root	N/A	27.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.12 %
Unclassified	root	N/A	27.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.27 %
Unclassified	root	N/A	27.88 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.85 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.23 %
Unclassified	root	N/A	27.88 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.85 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42.31 %
Unclassified	root	N/A	27.88 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.85 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10.58 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	7.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.69 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	7.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.85 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.96 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.85 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	1.92 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.96 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.96 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.85 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	1.92 %
Marmoricola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola	0.96 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.96 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.85 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1.92 %
Marmoricola pocheonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	0.96 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.96 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig82613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4371	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105042153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300000890\|JGI11643J12802_10208515	Not Available	701	Open in IMG/M
3300001535\|A3PFW1_10823573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	782	Open in IMG/M
3300004114\|Ga0062593_101594651	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300004463\|Ga0063356_103816624	Not Available	649	Open in IMG/M
3300004479\|Ga0062595_100860904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	757	Open in IMG/M
3300005175\|Ga0066673_10784534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300005294\|Ga0065705_10917295	Not Available	571	Open in IMG/M
3300005406\|Ga0070703_10073274	All Organisms → cellular organisms → Archaea	1149	Open in IMG/M
3300005455\|Ga0070663_100158488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1741	Open in IMG/M
3300005467\|Ga0070706_101658976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300005471\|Ga0070698_100117562	All Organisms → cellular organisms → Bacteria	2621	Open in IMG/M
3300005518\|Ga0070699_101211209	Not Available	693	Open in IMG/M
3300005524\|Ga0070737_10026300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3777	Open in IMG/M
3300005533\|Ga0070734_10381112	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005536\|Ga0070697_101114156	Not Available	703	Open in IMG/M
3300005545\|Ga0070695_100297110	All Organisms → cellular organisms → Archaea	1192	Open in IMG/M
3300005549\|Ga0070704_100216896	Not Available	1553	Open in IMG/M
3300005554\|Ga0066661_10487455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	747	Open in IMG/M
3300005555\|Ga0066692_10668006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	647	Open in IMG/M
3300005569\|Ga0066705_10395172	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300005587\|Ga0066654_10470333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	688	Open in IMG/M
3300005764\|Ga0066903_101101032	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300005764\|Ga0066903_106466290	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300005885\|Ga0075284_1007634	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300005891\|Ga0075283_1122307	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300006034\|Ga0066656_10560629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	742	Open in IMG/M
3300006046\|Ga0066652_100328313	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1369	Open in IMG/M
3300006046\|Ga0066652_101900806	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300006173\|Ga0070716_100439814	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300006175\|Ga0070712_100037655	All Organisms → cellular organisms → Bacteria	3299	Open in IMG/M
3300006175\|Ga0070712_101365305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	618	Open in IMG/M
3300006638\|Ga0075522_10549598	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300006797\|Ga0066659_10923317	Not Available	729	Open in IMG/M
3300006797\|Ga0066659_11689669	Not Available	534	Open in IMG/M
3300006852\|Ga0075433_10307467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1403	Open in IMG/M
3300006904\|Ga0075424_100971600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	906	Open in IMG/M
3300009098\|Ga0105245_10270088	Not Available	1658	Open in IMG/M
3300009101\|Ga0105247_10650867	Not Available	787	Open in IMG/M
3300009156\|Ga0111538_11298101	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300009156\|Ga0111538_13568022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300009545\|Ga0105237_12304057	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300009660\|Ga0105854_1074551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1043	Open in IMG/M
3300010301\|Ga0134070_10361724	Not Available	565	Open in IMG/M
3300010303\|Ga0134082_10489366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	535	Open in IMG/M
3300010335\|Ga0134063_10584638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300010396\|Ga0134126_12621272	Not Available	547	Open in IMG/M
3300010399\|Ga0134127_10907740	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300011999\|Ga0120148_1069574	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300012199\|Ga0137383_10369753	Not Available	1050	Open in IMG/M
3300012351\|Ga0137386_10409486	All Organisms → cellular organisms → Archaea	976	Open in IMG/M
3300012359\|Ga0137385_10997233	Not Available	691	Open in IMG/M
3300012361\|Ga0137360_10909263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola pocheonensis	759	Open in IMG/M
3300012362\|Ga0137361_10302303	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300012929\|Ga0137404_10191007	Not Available	1730	Open in IMG/M
3300012929\|Ga0137404_10391489	All Organisms → cellular organisms → Archaea	1224	Open in IMG/M
3300012929\|Ga0137404_10780665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	867	Open in IMG/M
3300012958\|Ga0164299_11115756	Not Available	590	Open in IMG/M
3300012958\|Ga0164299_11651037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300012976\|Ga0134076_10517887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300012982\|Ga0168317_1044008	Not Available	1148	Open in IMG/M
3300013306\|Ga0163162_11373062	Not Available	804	Open in IMG/M
3300014326\|Ga0157380_11888320	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300015242\|Ga0137412_11178870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300015264\|Ga0137403_10499917	Not Available	1087	Open in IMG/M
3300017659\|Ga0134083_10345271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300018027\|Ga0184605_10507653	All Organisms → cellular organisms → Bacteria → Terrabacteria group	524	Open in IMG/M
3300018061\|Ga0184619_10006547	All Organisms → cellular organisms → Bacteria	4423	Open in IMG/M
3300018468\|Ga0066662_11413911	Not Available	720	Open in IMG/M
3300018469\|Ga0190270_11178027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	803	Open in IMG/M
3300019356\|Ga0173481_10448905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	644	Open in IMG/M
3300019869\|Ga0193705_1091724	Not Available	568	Open in IMG/M
3300020001\|Ga0193731_1099414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	750	Open in IMG/M
3300020081\|Ga0206354_10456291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1197	Open in IMG/M
3300020150\|Ga0187768_1129466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	580	Open in IMG/M
3300021344\|Ga0193719_10025201	All Organisms → cellular organisms → Bacteria	2553	Open in IMG/M
3300022756\|Ga0222622_10350723	Not Available	1028	Open in IMG/M
3300025862\|Ga0209483_1368549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300025885\|Ga0207653_10011240	All Organisms → cellular organisms → Bacteria	2795	Open in IMG/M
3300025888\|Ga0209540_10245528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1041	Open in IMG/M
3300025910\|Ga0207684_10207877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1688	Open in IMG/M
3300025913\|Ga0207695_10805727	Not Available	819	Open in IMG/M
3300025915\|Ga0207693_10924706	Not Available	668	Open in IMG/M
3300025916\|Ga0207663_11456101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300025934\|Ga0207686_10426819	Not Available	1015	Open in IMG/M
3300025939\|Ga0207665_10610248	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300025986\|Ga0207658_11018555	Not Available	756	Open in IMG/M
3300025998\|Ga0208651_1022834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300026009\|Ga0208530_1005259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	910	Open in IMG/M
3300026973\|Ga0207479_100585	Not Available	1305	Open in IMG/M
3300027706\|Ga0209581_1021961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3230	Open in IMG/M
3300028563\|Ga0265319_1268292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300028577\|Ga0265318_10031802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2044	Open in IMG/M
3300028707\|Ga0307291_1163708	Not Available	569	Open in IMG/M
3300028807\|Ga0307305_10189738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	946	Open in IMG/M
3300028812\|Ga0247825_11464239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300028884\|Ga0307308_10072869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1623	Open in IMG/M
3300031152\|Ga0307501_10282980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300032013\|Ga0310906_10622495	Not Available	746	Open in IMG/M
3300032017\|Ga0310899_10730791	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300032179\|Ga0310889_10466646	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300032954\|Ga0335083_10714459	All Organisms → cellular organisms → Bacteria → Terrabacteria group	812	Open in IMG/M
3300034817\|Ga0373948_0011017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1590	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.65%
Host-Associated	Host-Associated	16.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.77%
Plants	Host-Associated → Plants	16.35%
Aquatic	Environmental → Aquatic	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.42%
Sediment	Environmental → Aquatic → Sediment	2.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Geologic	Environmental → Terrestrial → Geologic	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.77%
Loam	Environmental → Terrestrial → Soil → Loam	17.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Mine	Environmental → Terrestrial → Geologic → Mine	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.62%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.85%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.96%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005885	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401	Environmental	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011999	Permafrost microbial communities from Nunavut, Canada - A28_65cm_6M	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025998	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204 (SPAdes)	Environmental	Open in IMG/M
3300026009	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401 (SPAdes)	Environmental	Open in IMG/M
3300026973	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-C (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_02515810	2124908032	Soil	MHYGTSAVNFLEPPDAFLDALGARVERLDGSSLETEQLLGTADQPTVALLAAPASS
INPhiseqgaiiFebDRAFT_1050421531	3300000364	Soil	MHYRTDAVNFXDPPESFLAALGXRVERIERNELEAEEFLGTADEPVVAMLGAPRAS*
JGI11643J12802_102085152	3300000890	Soil	MHYRTEAVNFLDPPDEFLAALGARVERLDESELEAEQLFGTAEDPTVALLAPPS*
A3PFW1_108235732	3300001535	Permafrost	RLVVAMHYRTDAVNFLDPPDAFLEAYGARVEQVETSETDVEQLLGSREEPVVALLAPPTASS*
Ga0062593_1015946512	3300004114	Soil	AVNFLDPPDEFLAALGARVVRLDDSELDAESLLGTAEEPTVAVLAPPTS*
Ga0063356_1038166242	3300004463	Arabidopsis Thaliana Rhizosphere	PMHYRTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTPEDPTVALLAPPS*
Ga0062595_1008609041	3300004479	Soil	RTDAVNFLDPLDSFLAALGARVERIEKNELEAEEFLGTADEPAVAMLGVPTAPSSRQGGG
Ga0066673_107845342	3300005175	Soil	IPMHYRTEAVNFLDPPGEFLAALGARVERVPENELEVERFLGSIDDPTVALLAPPASS*
Ga0065705_109172952	3300005294	Switchgrass Rhizosphere	VNFLDPPDEFLAALGARVDRLDESEVEVEQLLGTAEDPTVALLAPPS*
Ga0070703_100732743	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VNFLDPPDEFLAALGARVERLNECELEVEQLLGTPEDPTVALLAPPS*
Ga0070663_1001584881	3300005455	Corn Rhizosphere	LRPRLVVPMHYRTEAVNFLEPPDEFLAALGARVERVDDSELEAGVLLGTADDPTVALLAPPKS*
Ga0070706_1016589762	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RLVVPMHYRTEAVNFLDPPHEFLAALGARAERFDESELEAEEFLGTAEDPTVALLAPPSS
Ga0070698_1001175622	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MHYRTAAVNFLEPPDAFFDALGVRVERLDQNEVEPEHFLGTADQPTVTLLAVPT*
Ga0070699_1012112092	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RLVVPMHYRTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTAEDPTVALVAPPS*
Ga0070737_100263003	3300005524	Surface Soil	MHYRTEAVNFLEPPDAFLSAFGVPVERLAEDEAEVEPLLGSRREPRVALLAARRPG*
Ga0070734_103811121	3300005533	Surface Soil	VAAAATRALSPRLVIPMHYRTEAISFLSPPDEFLDALGAPVERLDSSEAEIDGHLGTAGDPRVVLFAAPLAAG*
Ga0070697_1011141562	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTAEDPTVALVAPPS*
Ga0070695_1002971103	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MHYGTEAVNFLDPPDEFLAALGARVERLNECELEVEQLLGTPEDPTVALLAPPS*
Ga0070704_1002168964	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LVIPMHYGTEAVNFLDPPDEFLAALGARVERLNECELEVEQLLGTPEDPTVALLAPPS*
Ga0066661_104874552	3300005554	Soil	ALRPRLVVPMHYRTDAVNFLDPPDEFLDALGARVERVGENELEAEQFLGTADDPIVALLAPPLPE*
Ga0066692_106680062	3300005555	Soil	LVIPMHYRTDAVNFLDPPDTFLAALGAPVERIAESELQTEQLLGTKDEPSVALLAAPGAPIG*
Ga0066705_103951722	3300005569	Soil	SAAAIVSALRPRLVVPMHYRSEAVDFLDPPDEFLAALGARVERVDKSELEAEQFLGTADDPTVALLTPPASSQ*
Ga0066654_104703332	3300005587	Soil	GEPAAAIVRALRPRLVVPMHYRTDAVNFLDPPDEFLDALGARVERVGENELEAEQFLGTADDPTVALLAPPLPE*
Ga0066903_1011010321	3300005764	Tropical Forest Soil	PRLVAPMHYRTPLVNFLEPPDEFLDALGARVERVETSEVVAEDLLGSRDDPTVVLLAPPGA*
Ga0066903_1064662901	3300005764	Tropical Forest Soil	PRLVVPMHYRTPLVNFLEPPDEFLDALGARVERVEASEVVAEELLGSREDPTVLLLAPPGA*
Ga0075284_10076341	3300005885	Rice Paddy Soil	LVVPMHYRTGAVNFLEPPDVFLEALGARVERLETSETEVEALLGTAAEPVVALLAPPV*
Ga0075283_11223072	3300005891	Rice Paddy Soil	VVPMHYRTGAVNFLEPPDVFLEALGARVERLETSETEVEALLGTAAEPVVALLAPPV*
Ga0066656_105606291	3300006034	Soil	VRALRPRLVIPMHYRTDAVNFLDPPDEFLEALGARVERVTESELEAERLLGSSDDPTVALLAPPASN*
Ga0066652_1003283132	3300006046	Soil	VNFLDPPDEFLAALGARVERVPENELEVERFLGSIDDPTVALLAPPASS*
Ga0066652_1019008062	3300006046	Soil	TEAVNFLELPDAFLDALGARVERIPESEFEPEQLLGTADEPTVALLSAPIERSSTR*
Ga0070716_1004398141	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	PMHYGTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTAEDPTVALLAPPS*
Ga0070712_1000376551	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VNFLEPPDEFLAALGARVERVDDSELEAGVLLGTADDPTVALLAPPKS*
Ga0070712_1013653052	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RLVVTMHYRTDAVDFLDPPDDFLDALGARVERLDESELEVEQFLGTSDEPTVALLAAPAPS*
Ga0075522_105495981	3300006638	Arctic Peat Soil	LRPRLVVPMHYGTEAVNFLDPPDAFLETLGARVERIAANEFEAKQFLGTTDQPTVALLAIPTSH*
Ga0066659_109233172	3300006797	Soil	EAVNFLDLPDEFLAALGARVERLDESELEVEQLLGTAEDPTVALLAPPS*
Ga0066659_116896692	3300006797	Soil	FLDPPDAFLDALGARVERLEVNELDVEPFLGTADKPTVTLLAAPAGPANGP*
Ga0075433_103074671	3300006852	Populus Rhizosphere	RLVVPMHYRTEAVNFLEPPDEFLAALGARVERVDGSELEAEAFLGTADDPTVALLAPPKS
Ga0075424_1009716001	3300006904	Populus Rhizosphere	PMHYRTPLVNFLDPPDEFLDALGARVIRLEQSEAEADALLGSRDEPTVALLAAPGA*
Ga0105245_102700884	3300009098	Miscanthus Rhizosphere	VNFLDPPDEFLAALGARVERLNESELEVEQLLGTYEDPTVALLAPPS*
Ga0105247_106508671	3300009101	Switchgrass Rhizosphere	AAAIVRALRPRLVIPMHYRTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTAEDPTVALVAPPS*
Ga0111538_112981012	3300009156	Populus Rhizosphere	ELRPRLVVPMHYRTEAVNFLEPPDEFLAALGARVEKVDDSELEAEAFLGTADDPTVALLAPPKS*
Ga0111538_135680222	3300009156	Populus Rhizosphere	VGGESAAAIVRALRPRLVVPMHHRTEAVNFLDPPDEFLAALGARVVRLDDSELDAESLLGTAEEPTVAVLAPPTS*
Ga0105237_123040572	3300009545	Corn Rhizosphere	FLEPPDEFLAALGARVERVDDSELEAEAFLGTADDPTVALLAPPKA*
Ga0105854_10745513	3300009660	Permafrost Soil	AAAVVRLLRPRLVVPHHYRTAAISFLEPPDAFLDALGARVERLDEPELVVDQYLGTPEEPIIALLDFPRQGA*
Ga0134070_103617241	3300010301	Grasslands Soil	ESAAAIVRALRPRLVIPMHYRTEAVNFLDPPDEFLAALGSRVERLDESELEAERFLGTAEDPTVALLAPPS*
Ga0134082_104893662	3300010303	Grasslands Soil	GAVNFLEPPDAFLDALGARVERIPESEFEPEQLLGTADEPTVALLSAPIERSSTR*
Ga0134063_105846382	3300010335	Grasslands Soil	YRTDAVNFLDPPDEFLDALGARVERVGENELEAEQFLGTADDPIVALLAPPLPE*
Ga0134126_126212722	3300010396	Terrestrial Soil	AIVRALRPRLVIPMHYRTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTAEDPTVALVAPPS*
Ga0134127_109077402	3300010399	Terrestrial Soil	AAAIVRALRPRLVVPMHYRTEAVNFLEPPDEFLAALGARVERVDESELEAEAFLGTADDPTVALLAPPKS*
Ga0120148_10695741	3300011999	Permafrost	RALRPRLVVPMHYRTDAVNFLEPPDAFLDALGARVETLAKNELDAEQFLGTAEQPTVVLLAVPA*
Ga0137383_103697531	3300012199	Vadose Zone Soil	AIVRALRPRLVIPMHYRTEAVNFLDPPDEFLAALGSRVEPLDESELEAERFLGTAEDPTVALLAPPS*
Ga0137386_104094861	3300012351	Vadose Zone Soil	VNFLDPPDEFLAALGSRVEPLDESELEAERFLGTAEDPTVALLAPPS*
Ga0137385_109972331	3300012359	Vadose Zone Soil	AAAIVRALRPRLVIPMHYRTEAVNFLDPPDEFLAALGSRVERLDESELEAERCLGTAEDPTVALLARPS*
Ga0137360_109092631	3300012361	Vadose Zone Soil	ALQPRLVVPMHYRTDAVNFLEPPDAFLDALGGRVEKLAESELIAEQLLGTADERTVALPAAPIAS*
Ga0137361_103023033	3300012362	Vadose Zone Soil	VRALRPRLVVPMHYGTEAVNFLDPPDDFLEALGAHVARIAANEFEAERFLGTAEQPTVLLLAIPTSH*
Ga0137404_101910071	3300012929	Vadose Zone Soil	DAVNFLDPPDAFLDALGARVERVAESEFVAEQFLGTDDEPTIVLLGVPASS*
Ga0137404_103914893	3300012929	Vadose Zone Soil	SAAAIVRALRPRLVIPMHYRTQAVNFLDLPDEFLAALGARVERLDESELEVEQLLGTAEDPTVALLAPPS*
Ga0137404_107806652	3300012929	Vadose Zone Soil	RPRLVVPMHYRTDAVNFLDPPDAFLDALDARVERLEENELDVEPFLGTADEPTVTLLAAPAGPANGS*
Ga0164299_111157562	3300012958	Soil	PMHYPTPAIGFLDPPDAFLAALGARVERLESREAEVEPLMGSREEPVVALLAPPV*
Ga0164299_116510371	3300012958	Soil	MHYRTDAVNFLDPPESFLAALGARVERIERNELKAEEFLGTADEPAVAMLRVPMAPSSRQADPGGG*
Ga0134076_105178871	3300012976	Grasslands Soil	TTGGAPAAAVVRALRPRLVVPMHFRTEAVNFLELPDAFLDALGARVARIPESELEPEQILGAADEPTVALLSAPIERSSTR*
Ga0168317_10440082	3300012982	Weathered Mine Tailings	AVAPRLVVPMHYRTPAVNFLDEPEAFLAALGAHVVRVPASHIDANELLGTREAPTVALLAPPA*
Ga0163162_113730621	3300013306	Switchgrass Rhizosphere	RPRLVIPMHYRTEAVNFLDPPDEFLAALGARVERLDESELEVEQLLGTAQDPTVALLAPPS*
Ga0157380_118883202	3300014326	Switchgrass Rhizosphere	RLVVPMHYRTEAVNFLEPPDEFLSALGARLERVDDSELEAGALLGTADDPTVALLAPPKS
Ga0137412_111788701	3300015242	Vadose Zone Soil	MHYRTDAVNFLDPPDAFLDALGGRVEKLAESELTAEQLLGTADEPTVALPAAPIAS*
Ga0137403_104999171	3300015264	Vadose Zone Soil	RLVIPMHYRTDAVNFLDPPDAFLDALGARVERVAESEFVAEQFLGTDDEPTIVLLGVPASS*
Ga0134083_103452712	3300017659	Grasslands Soil	AAAIVRALRPRLVVPMHYRTDAVNFLDPPDEFLDALGARVERVGENELEAEQFLGTADDPIVALLAPPLPE
Ga0184605_105076532	3300018027	Groundwater Sediment	PRLVVPMHYRTDAVDFLDSPDGFLAALGARIERVAESELEAERFLGTADEPTVALLAAPVSS
Ga0184619_100065475	3300018061	Groundwater Sediment	MHYRTDAVDFLDPPDAFLAALGARIERVAESELEAERFLGTADEPTVALLAAPVSS
Ga0066662_114139112	3300018468	Grasslands Soil	AAIVRSLRPRLVIAMHYRTGAVNFLDPPDAFLDALDAPVEHSRESEVEAEPLLGAADRPTVALLAPPLPTERA
Ga0190270_111780271	3300018469	Soil	RLVVPMHFRTPAVNFLEPPDAFLDAMGARVKTLDASEARAADLLGSAADPTVVLFAVPS
Ga0173481_104489052	3300019356	Soil	MHYRTEAVNFLDPPDEFLAALGARVERLDESELEAEQLFGTAEDPTVALLAPPS
Ga0193705_10917241	3300019869	Soil	RTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTPEDPTVALLAPPS
Ga0193731_10994141	3300020001	Soil	EPAAAIVRALRPRLVVPMHYRTDAVDFLDPPDAFLAALGARIERVAESELEAERFLGTADEPTVALLAAPVSS
Ga0206354_104562913	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	AAAIVRTLRPGLVVPMHYRTDAVNFLDPPDAFLDAVGARIETLGESDFVAEQLLGTVGDPTVVLLAAPTSS
Ga0187768_11294661	3300020150	Tropical Peatland	LVVPMHYRTPALGFLDPPDEFLDALGARIERLESSEAEVEGLLGTKEAPTVALLAPPAG
Ga0193719_100252011	3300021344	Soil	MHYRTDAVDSLDFPDAFLAALGARIERVAESELEAERFLGTAGEPTVALLAAPASS
Ga0222622_103507233	3300022756	Groundwater Sediment	SRPRLVIPMHYRTEAVNFLDPPDEFLAALGARLERLNESELEVEQLLGTPEDPTVALLAPPS
Ga0209483_13685492	3300025862	Arctic Peat Soil	RLVVPMHYGTEAVNFLDPPDAFLETLGARVERIAANEFEAKQFLGTTDQPTVALLAIPTS
Ga0207653_100112405	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	TEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTPEDPTVALLAPPS
Ga0209540_102455282	3300025888	Arctic Peat Soil	AIVRALRPRLVVPMHYRTDAVNFLEPPDAFLDALGARVERVDENELEAEQFLGTADQPTVALLAVPAGS
Ga0207684_102078771	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MHYRTDAVNFLDPPESFLAALGAHVERIERNELEAEEFLGTADEPAVAMLGVPTAPTSRQGDPGGR
Ga0207695_108057273	3300025913	Corn Rhizosphere	VVPMHYRTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTYEDPTVALLAPPS
Ga0207693_109247061	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VPMHYRTDAVNFLEPPDAFLEALGARVETLAESELDVEQLFGTADQPTVALPAAPAAR
Ga0207663_114561012	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	PMHYRTDAVNFLEPPDAFLAALGARAERLETSEATVEDLLGTAAAPVVALLAPPI
Ga0207686_104268191	3300025934	Miscanthus Rhizosphere	RPRLVIPMHYGTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTPEDPTVALLAPP
Ga0207665_106102481	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	RLVIPMHYRTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTPEDPTVALLAPPS
Ga0207658_110185551	3300025986	Switchgrass Rhizosphere	KHIAAIVRALRPRLVIPMHYRTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTPEDPTVALLAPPS
Ga0208651_10228341	3300025998	Rice Paddy Soil	DLVRELAPRLVVPMHYRTGAVNFLEPPDVFLEALGARVERLETSETEVEALLGTAAEPVVALLAPPV
Ga0208530_10052593	3300026009	Rice Paddy Soil	LVVPMHYRTGAVNFLEPPDVFLEALGARVERLETSETEVEALLGTAAEPVVALLAPPV
Ga0207479_1005853	3300026973	Soil	RLVIPMHYRTEAVNFLDPPDEFLAALGARVERLDESELEAEQLLGTAEDPTVALLAPPS
Ga0209581_10219615	3300027706	Surface Soil	MHYRTEAVNFLEPPDAFLSAFGVPVERLAEDEAEVEPLLGSRREPRVALLAARRPG
Ga0265319_12682921	3300028563	Rhizosphere	RTDAVNFLDPPDAFLDALGARVERLDASELEAEDFLGTADQPTVVLLAVPAAS
Ga0265318_100318021	3300028577	Rhizosphere	PRLVVPMHYRTDAVNFLDPPDAFLDALGARVERLDASELEAEDFLGTADQPTVVLLAVPAAS
Ga0307291_11637082	3300028707	Soil	LRPRLVIPMHYRTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTPEDPTVALLAPPS
Ga0307305_101897383	3300028807	Soil	YRTDAVDFLDPPDAFLAALGARIERVAESELEAERFLGTADDPTVALLAAPVSS
Ga0247825_114642391	3300028812	Soil	FRTPAVNFLEPPDDFLEALGARVETLETSEARAADLLGTAADPTVVLFAVPS
Ga0307308_100728693	3300028884	Soil	VGGEPAAAIVRALRPRLVVPMHYRTDAVDFLDSPDGFLAALGARIERVAESELEAERFLGTADDPTVALLAAPVSS
Ga0307501_102829801	3300031152	Soil	VPMHYRTDAVNFLDPPDAFLDDLGARVEKLSESELVAEQLLGAPGEPTVALPAAPSI
Ga0310906_106224951	3300032013	Soil	VIPMHYRTEAVNFLDPPDEFLAALGARVERLNESELEVEQLLGTAEDPTVALLAPPS
Ga0310899_107307912	3300032017	Soil	IVRALRPRLVVPMHYRTDAVNFLEPPDEFLAALGARVQRVDDSELEAEAFLGTADDPTVALLAPPKS
Ga0310889_104666461	3300032179	Soil	AVNFLEPPDEFLAALGARVERVDDSELEAEAFLGTADDPTVALLAPPKN
Ga0335083_107144591	3300032954	Soil	HYRTEAINFLDPPDAFLDALGARVERVAAAEVEVEPLLGSRDEPVVVLLAPPLR
Ga0373948_0011017_1378_1545	3300034817	Rhizosphere Soil	MHYRTEAVNFLEPPDEFLAALGARVERVDDSELEAEAFLGTADDPTVALLAPPKN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097920

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences