Metagenome / Metatranscriptome Family F097909

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097909
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	86 residues
Representative Sequence	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA
Number of Associated Samples	87
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	42.31 %
% of genes near scaffold ends (potentially truncated)	31.73 %
% of genes from short scaffolds (< 2000 bps)	81.73 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (18.269 % of family members)
Environment Ontology (ENVO)	Unclassified (32.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.12% β-sheet: 0.00% Coil/Unstructured: 34.88%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00117	GATase	25.96
PF13469	Sulfotransfer_3	5.77
PF04185	Phosphoesterase	4.81
PF07722	Peptidase_C26	3.85
PF01966	HD	2.88
PF08818	DUF1801	0.96
PF00685	Sulfotransfer_1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	4.81
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.96
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.00 %
Unclassified	root	N/A	25.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.00 %
Unclassified	root	N/A	25.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.00 %
Unclassified	root	N/A	25.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.96 %
Unclassified	root	N/A	25.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.27 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.38 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.38 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.46 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	1.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.92 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.38 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.88 %
Bradymonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales	1.92 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1.92 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.88 %
Bradymonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae	1.92 %
Methylococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus	1.92 %
Chloroflexia bacterium SDU3-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium SDU3-3	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.88 %
unclassified Methylococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus → unclassified Methylococcus	1.92 %
Persicimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → Persicimonas	1.92 %
Chloroflexia bacterium SDU3-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium SDU3-3	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.88 %
Persicimonas caeni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → Persicimonas → Persicimonas caeni	1.92 %
Methylococcus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus → unclassified Methylococcus → Methylococcus sp.	1.92 %
Chloroflexia bacterium SDU3-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium SDU3-3	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908043\|A2_c1_ConsensusfromContig1981	All Organisms → cellular organisms → Bacteria → Acidobacteria	858	Open in IMG/M
2140918007\|ConsensusfromContig125456	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300001527\|A3513AW1_1137153	Not Available	587	Open in IMG/M
3300001686\|C688J18823_11011935	Not Available	527	Open in IMG/M
3300002568\|C688J35102_119814365	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300004479\|Ga0062595_101071721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	701	Open in IMG/M
3300004479\|Ga0062595_101111471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300005179\|Ga0066684_10437339	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300005329\|Ga0070683_100040440	All Organisms → cellular organisms → Bacteria	4287	Open in IMG/M
3300005329\|Ga0070683_100743835	All Organisms → cellular organisms → Bacteria → Acidobacteria	939	Open in IMG/M
3300005336\|Ga0070680_100264900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1454	Open in IMG/M
3300005336\|Ga0070680_100326735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1302	Open in IMG/M
3300005339\|Ga0070660_101180795	Not Available	649	Open in IMG/M
3300005344\|Ga0070661_100258781	All Organisms → cellular organisms → Bacteria → Acidobacteria	1345	Open in IMG/M
3300005355\|Ga0070671_101070036	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300005366\|Ga0070659_101845407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus → unclassified Methylococcus → Methylococcus sp.	542	Open in IMG/M
3300005434\|Ga0070709_10047401	All Organisms → cellular organisms → Bacteria	2677	Open in IMG/M
3300005434\|Ga0070709_10991067	Not Available	668	Open in IMG/M
3300005435\|Ga0070714_101203931	Not Available	739	Open in IMG/M
3300005436\|Ga0070713_101648473	Not Available	623	Open in IMG/M
3300005436\|Ga0070713_102157814	Not Available	540	Open in IMG/M
3300005437\|Ga0070710_10062099	All Organisms → cellular organisms → Bacteria	2130	Open in IMG/M
3300005437\|Ga0070710_10251054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1137	Open in IMG/M
3300005437\|Ga0070710_10613514	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300005439\|Ga0070711_100034853	All Organisms → cellular organisms → Bacteria	3360	Open in IMG/M
3300005456\|Ga0070678_101546968	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300005544\|Ga0070686_101542406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	561	Open in IMG/M
3300005564\|Ga0070664_101939377	Not Available	559	Open in IMG/M
3300005616\|Ga0068852_101746505	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300005764\|Ga0066903_100845428	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300005834\|Ga0068851_10204206	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300005841\|Ga0068863_102092148	Not Available	576	Open in IMG/M
3300006028\|Ga0070717_10792806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	862	Open in IMG/M
3300006173\|Ga0070716_100619630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	816	Open in IMG/M
3300006173\|Ga0070716_101228303	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300006871\|Ga0075434_101307994	All Organisms → cellular organisms → Bacteria → Terrabacteria group	736	Open in IMG/M
3300006904\|Ga0075424_100501069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1297	Open in IMG/M
3300009093\|Ga0105240_10948308	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → Persicimonas → Persicimonas caeni	923	Open in IMG/M
3300009098\|Ga0105245_10756910	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1008	Open in IMG/M
3300009098\|Ga0105245_10889696	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300010358\|Ga0126370_12512626	Not Available	513	Open in IMG/M
3300010359\|Ga0126376_10267414	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300010371\|Ga0134125_10079250	All Organisms → cellular organisms → Bacteria	3656	Open in IMG/M
3300010371\|Ga0134125_10166078	All Organisms → cellular organisms → Bacteria	2459	Open in IMG/M
3300010371\|Ga0134125_10394913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1534	Open in IMG/M
3300010373\|Ga0134128_12425666	Not Available	578	Open in IMG/M
3300010373\|Ga0134128_12452633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300010396\|Ga0134126_12121715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	613	Open in IMG/M
3300010401\|Ga0134121_10526091	All Organisms → cellular organisms → Bacteria → Acidobacteria	1093	Open in IMG/M
3300011998\|Ga0120114_1045125	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300012004\|Ga0120134_1003216	All Organisms → cellular organisms → Bacteria	2201	Open in IMG/M
3300012019\|Ga0120139_1002794	All Organisms → cellular organisms → Bacteria	4623	Open in IMG/M
3300012951\|Ga0164300_10806980	Not Available	582	Open in IMG/M
3300012985\|Ga0164308_11181514	Not Available	690	Open in IMG/M
3300013102\|Ga0157371_10374165	All Organisms → cellular organisms → Bacteria → Acidobacteria	1039	Open in IMG/M
3300013307\|Ga0157372_10240624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2100	Open in IMG/M
3300013765\|Ga0120172_1040153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1248	Open in IMG/M
3300013770\|Ga0120123_1001344	All Organisms → cellular organisms → Bacteria	4591	Open in IMG/M
3300013772\|Ga0120158_10300126	Not Available	777	Open in IMG/M
3300013832\|Ga0120132_1034003	All Organisms → cellular organisms → Bacteria → Acidobacteria	946	Open in IMG/M
3300014052\|Ga0120109_1112439	Not Available	632	Open in IMG/M
3300014056\|Ga0120125_1004417	All Organisms → cellular organisms → Bacteria	2880	Open in IMG/M
3300015168\|Ga0167631_1065827	Not Available	595	Open in IMG/M
3300015374\|Ga0132255_100612858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1610	Open in IMG/M
3300018431\|Ga0066655_11347065	Not Available	515	Open in IMG/M
3300018433\|Ga0066667_10067616	All Organisms → cellular organisms → Bacteria	2243	Open in IMG/M
3300019890\|Ga0193728_1114565	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300019890\|Ga0193728_1122579	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300020070\|Ga0206356_10434624	Not Available	509	Open in IMG/M
3300020082\|Ga0206353_11120852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1410	Open in IMG/M
3300020082\|Ga0206353_11359522	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300025464\|Ga0208076_1053609	All Organisms → cellular organisms → Bacteria → Terrabacteria group	701	Open in IMG/M
3300025898\|Ga0207692_10026774	All Organisms → cellular organisms → Bacteria → Acidobacteria	2708	Open in IMG/M
3300025898\|Ga0207692_10105332	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300025905\|Ga0207685_10702098	Not Available	551	Open in IMG/M
3300025906\|Ga0207699_10935058	Not Available	640	Open in IMG/M
3300025911\|Ga0207654_10225907	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1244	Open in IMG/M
3300025912\|Ga0207707_10029750	All Organisms → cellular organisms → Bacteria	4777	Open in IMG/M
3300025912\|Ga0207707_10068317	All Organisms → cellular organisms → Bacteria	3096	Open in IMG/M
3300025915\|Ga0207693_10307166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1242	Open in IMG/M
3300025916\|Ga0207663_10233663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1345	Open in IMG/M
3300025919\|Ga0207657_10520638	All Organisms → cellular organisms → Bacteria → Terrabacteria group	931	Open in IMG/M
3300025921\|Ga0207652_10026944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4789	Open in IMG/M
3300025924\|Ga0207694_10719312	All Organisms → cellular organisms → Bacteria → Acidobacteria	842	Open in IMG/M
3300025928\|Ga0207700_11653165	Not Available	566	Open in IMG/M
3300025929\|Ga0207664_10144834	All Organisms → cellular organisms → Bacteria	2014	Open in IMG/M
3300025929\|Ga0207664_10766527	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300025931\|Ga0207644_10900726	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → Persicimonas → Persicimonas caeni	741	Open in IMG/M
3300025932\|Ga0207690_11772697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus → unclassified Methylococcus → Methylococcus sp.	515	Open in IMG/M
3300025939\|Ga0207665_10667617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	816	Open in IMG/M
3300025944\|Ga0207661_11057668	Not Available	747	Open in IMG/M
3300025945\|Ga0207679_11503493	Not Available	617	Open in IMG/M
3300025949\|Ga0207667_10695591	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300026095\|Ga0207676_12222659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium SDU3-3	547	Open in IMG/M
3300026142\|Ga0207698_11195297	All Organisms → cellular organisms → Bacteria → Acidobacteria	774	Open in IMG/M
3300027725\|Ga0209178_1071331	All Organisms → cellular organisms → Bacteria → Acidobacteria	1133	Open in IMG/M
3300027787\|Ga0209074_10249346	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300028379\|Ga0268266_11479883	Not Available	655	Open in IMG/M
3300028768\|Ga0307280_10362615	Not Available	536	Open in IMG/M
3300028800\|Ga0265338_11202874	Not Available	508	Open in IMG/M
3300031938\|Ga0308175_101070328	All Organisms → cellular organisms → Bacteria → Terrabacteria group	893	Open in IMG/M
3300031939\|Ga0308174_10049906	All Organisms → cellular organisms → Bacteria	2821	Open in IMG/M
3300032074\|Ga0308173_10619521	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300032892\|Ga0335081_10151137	All Organisms → cellular organisms → Bacteria	3320	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.08%
Host-Associated	Host-Associated	26.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.08%
Plants	Host-Associated → Plants	26.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.23%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.42%
Loam	Environmental → Terrestrial → Soil → Loam	32.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	29.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	18.27%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	9.62%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908043	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
3300001527	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-5cm-13A)- 1 week illumina	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011998	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M	Environmental	Open in IMG/M
3300012004	Permafrost microbial communities from Nunavut, Canada - A30_5cm_6M	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014052	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M	Environmental	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300015168	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2_c1_01303590	2124908043	Soil	MPVDPEFDRPALVDRIVLGATEPDPVRLHGAIVAALELYGRDDALRRVFVPALARTRREHGQAGRDVAAAAIRDQLRLEGPPGGRYQSPSP
A_all_C_01408420	2140918007	Soil	MPVDPEFDRPALVDRIVLGATEPDPVRLHGAIVAALELYGRDDALRGVFVPALVKARREHGRAGRDVAAAAI
A3513AW1_11371531	3300001527	Permafrost	VSVDPAFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGREAALREVFVPALRLARIEHGRAGRERAAAAIRDQLRLLPA*
C688J18823_110119352	3300001686	Soil	MIAPMPVDPEFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFVPALRQIRLEHGRAARNAASAAIRDQLGPGGGYQSASS*
C688J35102_1198143652	3300002568	Soil	MIAPMPVDPEFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFVPALRQIRLEHGRAARNAASAAIRDQLG
Ga0062595_1010717212	3300004479	Soil	MPVDPEFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGREDALREVFVPALRRIRREHGRAARDRASAAIRDQLGPSGGYQSPSP*
Ga0062595_1011114711	3300004479	Soil	MPVDPDFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFLPALRRIRREHGRAARDRASAAIRDQLGPDGGYQSPSP*
Ga0066684_104373391	3300005179	Soil	MPVDPDFRRPALVDRIVRGAAESDPVRLHGAIVAALELYGRDDALREVFVPALRRIRAEDGRAARNRASGAIRDQLGSGGYQSPSV*
Ga0070683_1000404403	3300005329	Corn Rhizosphere	VPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGREDALRQVFVPALRRIQAEHGRPARNRASGAIRDQLGSGGYQSPSA*
Ga0070683_1007438351	3300005329	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALHRVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA*
Ga0070680_1002649003	3300005336	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDAVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARNHASGAIRDQLGSGGYQSPSA*
Ga0070680_1003267352	3300005336	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALHGVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA*
Ga0070660_1011807952	3300005339	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA*
Ga0070661_1002587813	3300005344	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALHRVFVPALRQIQAEHGRAARNRASGAIRDQLGSGG
Ga0070671_1010700361	3300005355	Switchgrass Rhizosphere	MPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARSRASGAIRDQLGSGGYQSPSA*
Ga0070659_1018454071	3300005366	Corn Rhizosphere	PDAGDHPTQMPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGREDALRQVFVPALRRIQAEHGRPARNRASGAIRDQLGSGGYQSPSA*
Ga0070709_100474012	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRMPVDPEFRRSGLVDRIVRGATEPDPVRLHGAIVAALELYARDEALRRVFVPALRRVRREHGRAARAVAAAAISGQLQLGAPRDGGYQSPSP*
Ga0070709_109910672	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVRGTMEPDAVRLHGAIVAALELYGRDDALRAVFVPALRQIRGEHGRPARNRASAAIRDQLGPRGYQSPSA*
Ga0070714_1012039312	3300005435	Agricultural Soil	MVGSPDAGDHPTQMPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALREVFVPALRRIQAEHGRAARNRASGAIRDQLGSGGYQSSSA*
Ga0070713_1016484732	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALRQVFVPALRRIQAEHGRAARNRASGAIRDQLGSAGYQSPSA*
Ga0070713_1021578142	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVRGTMEPDAVRLHGAIVAALELYGRDDALRAVFVPALRQIRGEHGRPARSRASAAIRDQLGPRGYQSPSA*
Ga0070710_100620993	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	RIVRGAAERDLVRLHGAVVATLELYGRDDALHGVFVPALRRLRREHGRGARAVAAAAIADQLRLDGPYQSPPA*
Ga0070710_102510542	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFARSALVDRIVRGATEPDPVRLHGAIVAALELYGRDDALRSVFVPALARARREHGRAGRAAVAAAIGDQLRLARGYQSPSP*
Ga0070710_106135142	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	PALVDRIVRGTMEPDAVRLHGAIVAALELYGRDDALRAVFVPALRQIRGEHGRPARNRASAAIRDQLGPRGYQSPSA*
Ga0070711_1000348533	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFRRPALADRIVRGAAERDLVRLHGAVVATLELYGRDDALHGVFVPALRRLRREHGRGARAVAAAAIADQLRLDGPYQSPPA*
Ga0070678_1015469681	3300005456	Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRPARNRASGAIRDQLGSAGYQSPSA*
Ga0070686_1015424061	3300005544	Switchgrass Rhizosphere	PMPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALHGVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA*
Ga0070664_1019393772	3300005564	Corn Rhizosphere	VPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGREDALRQVFVPALRRIQAEHGRPARNRASGAIRDQLGSGGY
Ga0068852_1017465051	3300005616	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRTARNRASGAIRDQLR
Ga0066903_1008454282	3300005764	Tropical Forest Soil	MPVDPDFRRPALVDRIVRGTMESDPVRLHGAIVAALELYGRDDALREVFVPALRQIRAEHGRAARNRASAAIRDQLGGYQSSSL*
Ga0068851_102042062	3300005834	Corn Rhizosphere	VPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA*
Ga0068863_1020921482	3300005841	Switchgrass Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALREVFVPALRRIQAEHGRAARNRASGAIRDQLGSGGYQSSSA*
Ga0070717_107928061	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRMPVDPEFRRSGLVDRIVRGATEPDPVRLHGAIVAALELYARDEALQRVFVPALRRVRREHGRAARAVAAAAISGQLQLGAPRDGGYQSPSP*
Ga0070716_1006196302	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VHPDFERSALIDRIVRGATEPDLVRLHGAIVAALELYGRDDAVRRVFVPALARVRREHGRPGRDIAAAAIGDQLRLDRYQSPSP*
Ga0070716_1012283032	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRMPVDPEFRRSGLVDRIVRGATEPDPVRLHGAIVAALELYARDEALRRVFVPALRRVRREHGRAARAVAAAAISGQLQLGAPRDGG
Ga0075434_1013079941	3300006871	Populus Rhizosphere	MPVDPDFRRPALVDRIVRGTAEPDPVRLHGAIVAALELYGRDDALREVFVPALRRIQAEHGRLARNRASAAIRDQLGPRGYQSRSP*
Ga0075424_1005010692	3300006904	Populus Rhizosphere	MPVDPDFRRPALVDRIVRGTAEPDPVRLHGAIVAALELYGRDDALREVFVPALRRIQAEHGRLARNRASAAIRDQLGPRGYQSPSP*
Ga0105240_109483082	3300009093	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRTARNRASGAIRDQLRSGGYQSPSA*
Ga0105245_107569102	3300009098	Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGREDALRQVFVPALRRIQAEHGRPARNRASGAIRDQLGSGGYQSPSA*
Ga0105245_108896962	3300009098	Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA*
Ga0126370_125126261	3300010358	Tropical Forest Soil	MPVDPDFRRPALVDRIVRGTMESDPVRLHGAIVAALELYGRDDALREVFVPALRQIRAEHGRAARNRASDAIRDQLGGYQSSSP*
Ga0126376_102674143	3300010359	Tropical Forest Soil	TRRGGTFDAMPVDPDFRRPALVDRIVRGTMESDPVRLHGAIVAALELYGRDDALREVFVPALRQIRAEHGRAARNRASAAIRDQLGGYQSSSP*
Ga0134125_100792503	3300010371	Terrestrial Soil	MPVDPDFRRPALVDRIVRGTMESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEAGRTARNRASGAMRDQLGSSGYQSPSA*
Ga0134125_101660782	3300010371	Terrestrial Soil	MPVDPDFRRPALVDRIVRGTMEPDAVRLHGAIVAALELYGRDDALRAVFVPALRQIRAEHGRPARNRASAAIRDQLGPRGYQSPSA*
Ga0134125_103949131	3300010371	Terrestrial Soil	MPVDPDFRRPALVDRIVRGTAESDPVRLHGAIVAALELYGRDDALREVFVPALRRIRAEGGRPARNRASGAIRDQLGSGGYQSSSV*
Ga0134128_124256662	3300010373	Terrestrial Soil	MPVDPEFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFLPALRRIRREHGRAARDRASAAIRDQLGPDGGYQSPSP*
Ga0134128_124526331	3300010373	Terrestrial Soil	RPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALREVFVPALRRIQAEHGRAARNRASGAIRDQLGSGGYQSSSA*
Ga0134126_121217152	3300010396	Terrestrial Soil	VPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYRREDALRQVFVPALRRIQAEHGRPARNRASGAIRDQLGSGGYQSPSA*
Ga0134121_105260912	3300010401	Terrestrial Soil	VPVDPDFRRPALVDRIVRGTMESDPVRLHGAIVAALELYGREDALRQVFVPALRRIQAEHGRPARNRASGAIRDQLGSGGYQSPSA*
Ga0120114_10451252	3300011998	Permafrost	VVAVDPDFRRSALAERIVRGALEPDLVRLHGSIVAALEIYGRDAALREVFVPALRRARSEQGRAGRAQAAVAIRDQLRLHACG*
Ga0120134_10032163	3300012004	Permafrost	VSVDPAFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGREAALREVFVPALRLARIEHGRAGRERAAAAIRDQLRLPPA*
Ga0120139_10027945	3300012019	Permafrost	VSVDPAFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGRDAALREVFVPALRRARSEQGRAGRAQAAVAIRDQLRLHACG*
Ga0164300_108069802	3300012951	Soil	MIARMPVDPDFRRPALVDRIVRGTMEPDAVRLHGAIVAALELYGRDDALRAVFVPALRQIRGEHGRPARNRASAAIRDQLGPRGYQSPSA*
Ga0164308_111815142	3300012985	Soil	MICGMPVDPDFRRPALVDRIVRGAAERDLVRLHGAIVATLELHGRDDALRGVFVPALRRLRREHGRGLRTVAADAISDQLRPDGPYQSPSE*
Ga0157371_103741652	3300013102	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRLFVPALRQIQAEHGRAARSRASGAIRDQLGSGGYQSPSA*
Ga0157372_102406243	3300013307	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFLPALRRIRREHGRAARDRASAAIRDQLGSGGYQSPSA*
Ga0120172_10401531	3300013765	Permafrost	VSVDPAFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGREAALREVFVPALRLARIEHGLAGRE
Ga0120123_10013446	3300013770	Permafrost	VSVDPAFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGREAALREVFVPALRLARIEHGLAGRERAAAAIRDQLRLLPA*
Ga0120158_103001262	3300013772	Permafrost	VSVDPAFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGREAARREVFVPALRLARIEHGRAGRERAAAAIRDQLRLLPA*
Ga0120132_10340032	3300013832	Permafrost	VSVDPAFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGREAALREGFVPALRLARIEHGRAGRERAAAAIRDQLRLLPA*
Ga0120109_11124392	3300014052	Permafrost	VSVDPDFRRSALAERIVRGAHEPDLVRLHGSIVAALEIYGREAALREVFVPALRLARIEHGRAGRDRAAGAIRDQLRL*
Ga0120125_10044172	3300014056	Permafrost	VSVDPAFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGREAALREVFVPALRLARIQHGRAGRERAAAAIRDQLRLLPA*
Ga0167631_10658272	3300015168	Glacier Forefield Soil	VSVDPDFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGREAALREVFVPALRLARIEHGRVGRDRAAAAIRDQLRLVPA*
Ga0132255_1006128581	3300015374	Arabidopsis Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALREVFVPALRRIQAEHGRAARNRASGAIRDQLGSGG
Ga0066655_113470652	3300018431	Grasslands Soil	MPVDPDFRRPALVDRIVRGTMEPDPVRLHGAIVAALELYGRDDALREVFVPALRRIRAEHGRAARNRASAAVRDQLGPRGYQSQSA
Ga0066667_100676162	3300018433	Grasslands Soil	MPVDPDFRRPALVDRIVRGAAESDPVRLHGAIVAALELYGRDDALREVFVPALRRIRAEDGRAARNRASGAIRDQLGSGGYQSPSV
Ga0193728_11145652	3300019890	Soil	MPVDPEFDRPALVERIVRGATEPDPVRLHGAIVAALELYGREDALRGVFVPALARTRRDHGRAGRDVAAAAISDQLRLEGPPGGRYQSPSA
Ga0193728_11225792	3300019890	Soil	VSVDPDFRRSALAERIVLGAHEPDLVRLHGSIVAALEIYGREAALREVFVPALRLARIEHGRVGRERAAAAIRDQLRLPPA
Ga0206356_104346242	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	DPDFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFLPALRRIRREHGRAARDRASAAIRDQLGPDGGYQSPSP
Ga0206353_111208523	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVHGTTESDPVRLHGAIVAALELYGRDDALHGVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA
Ga0206353_113595222	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGREDALRQVFVPALRRIQAEHGRPARNRASGAIRDQLGSGGYQSPSA
Ga0208076_10536091	3300025464	Arctic Peat Soil	DGMVPVDPDFRRSALAARIVRGALEPDLVRLHGSIVAALEIYGREAALREVFVPALRLARIERGREGREQAALAIRAQLRLHVPG
Ga0207692_100267743	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVRGTMEPDAVRLHGAIVAALELYGRDDALRAVFVPALRQIRGEHGRPARNRASAAIRDQLGPRGYQSPSA
Ga0207692_101053322	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFARSALVDRIVRGATEPDPVRLHGAIVAALELYGRDDALRSVFVPALARARREHGRAGRAAVAAAIGDQLRLARGYQSPSP
Ga0207685_107020982	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVRGTMEPDAVRLHGAIVAALELYGRDDALRAVFVPALRQIRGEHGRPARNRASAAIRDQLGPRGYQS
Ga0207699_109350582	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MIPRMPVDPEFRRSGLVDRIVRGATEPDPVRLHGAIVAALELYARDEALRRVFVPALRRVRREHGRAARAVAAAAISGQLQLGAPRDGGYQSPSP
Ga0207654_102259071	3300025911	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRTARNRASGAIRDQLRSGGYQSPSA
Ga0207707_100297504	3300025912	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALHGVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA
Ga0207707_100683173	3300025912	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDAVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARNHASGAIRDQLGSGGYQSPSA
Ga0207693_103071661	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GATEPDPVRLHGAIVAALELYARDEALRRVFVPALRRVRREHGRAARAVAAAAISGQLQLGAPRDGGYQSPSP
Ga0207663_102336633	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	DRIVRGAAERDLVRLHGAVVATLELYGRDDALHGVFVPALRRLRREHGRGARAVAAAAIADQLRLDGPYQSPPA
Ga0207657_105206382	3300025919	Corn Rhizosphere	VDPDFRRPALVDRIVRGATESDRVRLHGAIVAALELYGRDDALREVFLPALRRIRREHGRAARDRASAAIRDQLGPDGGYQSPSP
Ga0207652_100269445	3300025921	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALHRVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA
Ga0207694_107193122	3300025924	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA
Ga0207700_116531652	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPDFRRPALVDRIVRGTMEPDAVRLHGAIVAALELYGRDDALRAVFVPALRQIRGEHGRPARSRASAAIRDQLGPRGYQSPSA
Ga0207664_101448341	3300025929	Agricultural Soil	LCPMPEGQERLPDSGGGAGPHRGWCGPRRGAMIPRMPVDPEFRRSGLVDRIVRGATEPDPVRLHGAIVAALELYTRDEALRRVFVPALRRVRREHGRAARAVAAAAISGQLQLGAPRDGGYQSPSP
Ga0207664_107665271	3300025929	Agricultural Soil	AAGMVGSPDAGDHPTQMPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALREVFVPALRRIQAEHGRAARNRASGAIRDQLGSGGYQSSSA
Ga0207644_109007261	3300025931	Switchgrass Rhizosphere	GPMPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARSRASGAIRDQLGSGGYQSPSA
Ga0207690_117726972	3300025932	Corn Rhizosphere	VTRRRRTSALVPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGREDALRQVFVPALRRIQAEHGRPARNRASGAIRDQLGSGGYQSPSA
Ga0207665_106676172	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VHPDFERSALIDRIVRGATEPDLVRLHGAIVAALELYGRDDAVRRVFVPALARVRREHGRPGRDIAAAAIGDQLRLDRYQSPSP
Ga0207661_110576682	3300025944	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARNRASGAIRDQLGSGGYQSPSA
Ga0207679_115034932	3300025945	Corn Rhizosphere	VPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRTARNRASGAIRDQLRSGGYQSPSA
Ga0207667_106955911	3300025949	Corn Rhizosphere	VPVDPDFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFLPALRRIRREHGRAARDRASAAIRDQLGPDGGYQSPSP
Ga0207676_122226592	3300026095	Switchgrass Rhizosphere	VTRRGGTSGPMPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRAARSRASGAIRDQLGSGGYQSPSA
Ga0207698_111952971	3300026142	Corn Rhizosphere	MPVDPDFRRPALVDRIVRGTLESDPVRLHGAIVAALELYGRDDALRRVFVPALRQIQAEHGRTARNRASGAIRDQLRSG
Ga0209178_10713312	3300027725	Agricultural Soil	MPVDPDFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFLPALRRIRREHGRAARDRASAAIRDQLGPDGGYQSPSP
Ga0209074_102493462	3300027787	Agricultural Soil	MPVDPDFRRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFLPALRRIRREHGRAARDRASAAIRDQLGPD
Ga0268266_114798831	3300028379	Switchgrass Rhizosphere	RCGDGGVTRRRRTSALVPVDPDFRRPALVDRIVRGTTESDPVRLHGAIVAALELYGREDALRQVFVPALRRIQAEHGRPARNRASGAIRDQLGSGGYQSPSA
Ga0307280_103626152	3300028768	Soil	QILGRAKWPLRGWPGSPGSGMIARMPVDPDFRRPALVDRIVRGTSESDPVRLHGAIVAALELYGRDDALREVFVPALRQIRVEHGRAARNRASAAIRDQLGPRGYQSPSA
Ga0265338_112028741	3300028800	Rhizosphere	PHRGWCRLRLGAMIPRMPVDPDFRRSALVDRIVRGATEPDPVRLHGAIVAALELYTRADALRGVFVPALARTRREHGRAARAVAAAAISGQLRLGEPPGGGYQSPSP
Ga0308175_1010703281	3300031938	Soil	RRPALVDRIVRGTTESDRVRLHGAIVAALELYGRDDALREVFVPALRQIRLEHGRAARNAASAAIRDQLGPGGGYQSASS
Ga0308174_100499062	3300031939	Soil	MPVDPDFRRPALVDRIVRGTTEPDPVRLHGAIVAALELYGRDDALREVFVPALRRIRAEGGRPARNRASGAIRDQLGSGGYQSSSV
Ga0308173_106195212	3300032074	Soil	MPVDPEFGRPALVERIVRGTTESDRVRLHGAIVAALELYGRDDALREVFTPALRQIRREHGRAARDRASAAIRDQLGPGGGYHSPSS
Ga0335081_101511374	3300032892	Soil	MAVDPDFHRPALVDRIVRGAAEGDRVRLHGAIVAALELYTREDALRGVFVPALRRARWEHGRDVRAAAAAAVSAQLRLASAGGQSASE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097909

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences