Metagenome / Metatranscriptome Family F097900

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097900
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	53 residues
Representative Sequence	YTVLQDSPTFWGEDGEQRWDAVQAELDAAPAGQATQCCGGPQAAGEEDAASSGACCG
Number of Associated Samples	89
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.27 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (24.038 % of family members)
Environment Ontology (ENVO)	Unclassified (21.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.71% β-sheet: 0.00% Coil/Unstructured: 75.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01925	TauE	10.58
PF01895	PhoU	6.73
PF01545	Cation_efflux	2.88
PF00829	Ribosomal_L21p	1.92
PF07210	DUF1416	1.92
PF04075	F420H2_quin_red	1.92
PF01406	tRNA-synt_1e	1.92
PF01022	HTH_5	1.92
PF12728	HTH_17	0.96
PF03466	LysR_substrate	0.96
PF12727	PBP_like	0.96
PF03965	Penicillinase_R	0.96
PF00004	AAA	0.96
PF02796	HTH_7	0.96
PF13738	Pyr_redox_3	0.96
PF14329	DUF4386	0.96
PF08241	Methyltransf_11	0.96
PF04963	Sigma54_CBD	0.96
PF00230	MIP	0.96
PF00486	Trans_reg_C	0.96
PF12730	ABC2_membrane_4	0.96
PF00578	AhpC-TSA	0.96
PF09234	DUF1963	0.96
PF05729	NACHT	0.96
PF12695	Abhydrolase_5	0.96
PF01037	AsnC_trans_reg	0.96
PF00398	RrnaAD	0.96
PF02585	PIG-L	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	10.58
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	2.88
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	2.88
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	2.88
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.92
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.92
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.92
COG0261	Ribosomal protein L21	Translation, ribosomal structure and biogenesis [J]	1.92
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.96
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.96
COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	Transcription [K]	0.96
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.96
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.96
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	0.96
COG3878	Uncharacterized conserved protein YwqG, DUF1963 family	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	52.88 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.58 %
Candidatus Dormibacteraeota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.88 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.92 %
Candidatus Dormibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	8.65 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.96 %
unclassified Candidatus Dormibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter	0.96 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.96 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	7.69 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.96 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	0.96 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.96 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.96 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	7.69 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	1.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.96 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.96 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	0.96 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.96 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	7.69 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
unclassified Actinoplanes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes	0.96 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.96 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	0.96 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.96 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	7.69 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Actinoplanes sp. TFC3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. TFC3	0.96 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.96 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	0.96 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.96 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459013\|GO6OHWN01EESBE	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	521	Open in IMG/M
2199352025\|deepsgr__Contig_161588	Not Available	553	Open in IMG/M
3300002873\|Ga0006865J43189_103505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1066	Open in IMG/M
3300004152\|Ga0062386_100414262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1086	Open in IMG/M
3300004472\|Ga0068974_1062927	Not Available	522	Open in IMG/M
3300004476\|Ga0068966_1020346	Not Available	710	Open in IMG/M
3300004478\|Ga0068972_1050968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	680	Open in IMG/M
3300004479\|Ga0062595_100558854	Not Available	879	Open in IMG/M
3300004561\|Ga0068921_1208509	Not Available	1001	Open in IMG/M
3300004596\|Ga0068949_1009695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	838	Open in IMG/M
3300004608\|Ga0068924_1018368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	906	Open in IMG/M
3300004610\|Ga0068927_1012373	Not Available	669	Open in IMG/M
3300005338\|Ga0068868_101887643	All Organisms → cellular organisms → Bacteria → Terrabacteria group	565	Open in IMG/M
3300005435\|Ga0070714_101802564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	597	Open in IMG/M
3300005437\|Ga0070710_11480859	Not Available	509	Open in IMG/M
3300005545\|Ga0070695_100449679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	987	Open in IMG/M
3300005598\|Ga0066706_10899800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	690	Open in IMG/M
3300006052\|Ga0075029_100592783	Not Available	740	Open in IMG/M
3300006059\|Ga0075017_100919037	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300006173\|Ga0070716_100748372	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300006175\|Ga0070712_100364680	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300006175\|Ga0070712_100536221	Not Available	985	Open in IMG/M
3300006354\|Ga0075021_11105252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300006358\|Ga0068871_100631103	Not Available	976	Open in IMG/M
3300009089\|Ga0099828_10389417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1257	Open in IMG/M
3300009101\|Ga0105247_11609743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	534	Open in IMG/M
3300009698\|Ga0116216_10575759	Not Available	679	Open in IMG/M
3300009839\|Ga0116223_10100323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1830	Open in IMG/M
3300009839\|Ga0116223_10573994	Not Available	652	Open in IMG/M
3300010336\|Ga0134071_10754233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	518	Open in IMG/M
3300010362\|Ga0126377_12883341	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300010371\|Ga0134125_11469242	Not Available	742	Open in IMG/M
3300010379\|Ga0136449_100359059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2613	Open in IMG/M
3300010379\|Ga0136449_100909316	Not Available	1433	Open in IMG/M
3300010396\|Ga0134126_11718838	Not Available	689	Open in IMG/M
3300010861\|Ga0126349_1298055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	522	Open in IMG/M
3300010876\|Ga0126361_10076612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	569	Open in IMG/M
3300011048\|Ga0138556_118845	Not Available	828	Open in IMG/M
3300011048\|Ga0138556_155370	Not Available	538	Open in IMG/M
3300011054\|Ga0138523_1068350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	601	Open in IMG/M
3300011070\|Ga0138567_1058042	Not Available	877	Open in IMG/M
3300011079\|Ga0138569_1113380	Not Available	606	Open in IMG/M
3300011086\|Ga0138564_1065724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1243	Open in IMG/M
3300011086\|Ga0138564_1093451	Not Available	706	Open in IMG/M
3300011087\|Ga0138570_1117940	Not Available	551	Open in IMG/M
3300011087\|Ga0138570_1118746	Not Available	538	Open in IMG/M
3300011090\|Ga0138579_1330348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1044	Open in IMG/M
3300012201\|Ga0137365_10204048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1477	Open in IMG/M
3300012948\|Ga0126375_11775715	All Organisms → cellular organisms → Bacteria → Terrabacteria group	537	Open in IMG/M
3300013105\|Ga0157369_10495843	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1263	Open in IMG/M
3300013307\|Ga0157372_10988698	All Organisms → cellular organisms → Bacteria → Terrabacteria group	975	Open in IMG/M
3300014968\|Ga0157379_11111447	Not Available	757	Open in IMG/M
3300014968\|Ga0157379_11592765	All Organisms → cellular organisms → Bacteria → Terrabacteria group	637	Open in IMG/M
3300018043\|Ga0187887_10420624	Not Available	788	Open in IMG/M
3300021178\|Ga0210408_10203792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1573	Open in IMG/M
3300021403\|Ga0210397_11572495	Not Available	510	Open in IMG/M
3300021404\|Ga0210389_10958293	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300021432\|Ga0210384_10211412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1745	Open in IMG/M
3300021478\|Ga0210402_10628858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	994	Open in IMG/M
3300021478\|Ga0210402_11574304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	584	Open in IMG/M
3300021478\|Ga0210402_11591635	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300022716\|Ga0242673_1007072	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300025885\|Ga0207653_10045486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1450	Open in IMG/M
3300025915\|Ga0207693_11306751	Not Available	542	Open in IMG/M
3300025916\|Ga0207663_10555314	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300025928\|Ga0207700_10092082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	2396	Open in IMG/M
3300025929\|Ga0207664_10639120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. TFC3	956	Open in IMG/M
3300025929\|Ga0207664_10683053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	923	Open in IMG/M
3300025929\|Ga0207664_11675370	Not Available	558	Open in IMG/M
3300025986\|Ga0207658_11021222	All Organisms → cellular organisms → Bacteria → Terrabacteria group	755	Open in IMG/M
3300026300\|Ga0209027_1248231	Not Available	571	Open in IMG/M
3300027725\|Ga0209178_1349498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	553	Open in IMG/M
3300027894\|Ga0209068_10943106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	512	Open in IMG/M
3300028718\|Ga0307307_10079857	All Organisms → cellular organisms → Bacteria → Terrabacteria group	982	Open in IMG/M
3300028742\|Ga0302220_10089669	Not Available	1220	Open in IMG/M
3300028755\|Ga0307316_10198261	All Organisms → cellular organisms → Bacteria → Terrabacteria group	723	Open in IMG/M
3300028759\|Ga0302224_10251508	Not Available	705	Open in IMG/M
3300028773\|Ga0302234_10041519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2100	Open in IMG/M
3300028811\|Ga0307292_10484167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300030618\|Ga0311354_10205277	Not Available	2103	Open in IMG/M
3300031040\|Ga0265754_1031351	Not Available	548	Open in IMG/M
3300031616\|Ga0307508_10814613	Not Available	552	Open in IMG/M
3300031708\|Ga0310686_108176052	All Organisms → cellular organisms → Bacteria	1609	Open in IMG/M
3300031744\|Ga0306918_11066131	Not Available	627	Open in IMG/M
3300031748\|Ga0318492_10099706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1426	Open in IMG/M
3300031777\|Ga0318543_10582678	All Organisms → cellular organisms → Bacteria → Terrabacteria group	501	Open in IMG/M
3300031779\|Ga0318566_10323092	All Organisms → cellular organisms → Bacteria → Terrabacteria group	763	Open in IMG/M
3300031821\|Ga0318567_10099588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1571	Open in IMG/M
3300031846\|Ga0318512_10317324	Not Available	776	Open in IMG/M
3300031846\|Ga0318512_10393298	All Organisms → cellular organisms → Bacteria → Terrabacteria group	696	Open in IMG/M
3300031880\|Ga0318544_10093011	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300031938\|Ga0308175_102900618	All Organisms → cellular organisms → Bacteria → Terrabacteria group	535	Open in IMG/M
3300032052\|Ga0318506_10303934	All Organisms → cellular organisms → Bacteria → Terrabacteria group	707	Open in IMG/M
3300032055\|Ga0318575_10014613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	3141	Open in IMG/M
3300032094\|Ga0318540_10437719	All Organisms → cellular organisms → Bacteria → Terrabacteria group	632	Open in IMG/M
3300032160\|Ga0311301_10149405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4234	Open in IMG/M
3300032160\|Ga0311301_12711073	Not Available	545	Open in IMG/M
3300032770\|Ga0335085_11015478	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300032770\|Ga0335085_11179691	Not Available	815	Open in IMG/M
3300032770\|Ga0335085_11446458	Not Available	718	Open in IMG/M
3300032782\|Ga0335082_11332188	Not Available	587	Open in IMG/M
3300032898\|Ga0335072_11558776	All Organisms → cellular organisms → Bacteria → Terrabacteria group	560	Open in IMG/M
3300032954\|Ga0335083_10800310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	756	Open in IMG/M
3300033134\|Ga0335073_10235182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2246	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.35%
Host-Associated	Host-Associated	8.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.58%
Plants	Host-Associated → Plants	8.65%
Aquatic	Environmental → Aquatic	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.77%
Sediment	Environmental → Aquatic → Sediment	3.85%
Peat	Environmental → Terrestrial → Peat	3.85%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Roots	Host-Associated → Plants → Roots	1.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.50%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	24.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300002873	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 66 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004472	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004476	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004478	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004561	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004596	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 37 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004608	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 9 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004610	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 12 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011048	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 37 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011054	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011070	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 52 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011079	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 54 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011086	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011087	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011090	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N57_02752600	2170459013	Grass Soil	GQVLGHRHPGGERWEIYTVLEDSPTFWGQNDQQRWDAVQAELDGAPTGQTAQCCGGPQAASATGDAATGVCCV
deepsgr_02687610	2199352025	Soil	RRRWEIYTVLADSPTFWGQDGEQRWDAVQAELGGEPAGQATQCCGGPQAASGTGDAATGVCCA
Ga0006865J43189_1035051	3300002873	Peatlands Soil	LQDSPTFWGEDGEQRWDAVQAELDAAPAGQATQCCGGPAGSAAETGAGASCC*
Ga0062386_1004142623	3300004152	Bog Forest Soil	EIYTVLEDSQTFWGEDGGQGWAYVEAELDASASASAPAAQCCGTQEAEGESASSGACCV*
Ga0068974_10629272	3300004472	Peatlands Soil	IYTVLQDSPTFWGKDGGQRWDAVQAELDASPAGQATQCCGGPRAAGEEDAASAGACCGSVQPGP*
Ga0068966_10203462	3300004476	Peatlands Soil	GGQRWDAVQAELDAAPAGQATQCCGGPQPAGEEDAASSGACCG*
Ga0068972_10509682	3300004478	Peatlands Soil	APGSERWEIYTVLQDSPTFWGEDDEQRWDAVQSELDAAPAGQATQCCGGPQAAGEEDAASSGACCG*
Ga0062595_1005588541	3300004479	Soil	TFWGQDGEQRWDAVQAELDGTPAGQVTQCCGSPQAASEDESAPSGACCG*
Ga0068921_12085091	3300004561	Peatlands Soil	VLQDSPTFWGQDGGQRWDAVQAELDAAPPGRATQCCGGPQAAGEEDAASSGACCG*
Ga0068949_10096952	3300004596	Peatlands Soil	GSERWEIYTVLQDSPTFWGEDGGQRWDAVQAELDAEPAGQATQCCGGPQAAGEDAASAGACCGSVQPGP*
Ga0068924_10183682	3300004608	Peatlands Soil	SERWEIYTVLQDSPTFWGQDGGQRWDAVQAELDAAPAGQATQCCGGPQPAGEEDAASSGACCG*
Ga0068927_10123731	3300004610	Peatlands Soil	GGQRWDAVQAEFDAEPAGQATQCCGGPQAAGEDAASAGACCGSVQPGP*
Ga0068868_1018876432	3300005338	Miscanthus Rhizosphere	PTFWGQDGEQRWDAVEAELDAPAGQATQCCGGPQAASGTGDAATGVCCA*
Ga0070714_1018025642	3300005435	Agricultural Soil	DSEQRWDAVQAELDGVPAGQATHCCGGPQAASEDAASIACCG*
Ga0070710_114808592	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	WEIYTVLEDSPTFWGQDSEQRWDAVQAGLDRVPAGQATQCCGGPQAISEDAASIACCG*
Ga0070695_1004496792	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	WEIYTVLEDSPTFWGEDGGQSWQTVEATLDAGQAGQAPQCCGGQQASDPSQAGACCP*
Ga0066706_108998002	3300005598	Soil	ERWEIYTVLADSATFWGQDGEQRWDAVQAELDSAPAGQATQCCGSPQAASATGDAATGVCCA*
Ga0075029_1005927832	3300006052	Watersheds	RWEIYTVLQDSPTFWGQDGEQRWDTVQAELDAPAGQATQCCGGPQAAGQEEPTSPGVCCE
Ga0075017_1009190371	3300006059	Watersheds	TVQAELDANPTGQATQCCGDPQAASEDAGSSGVCCG*
Ga0070716_1007483722	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	TFWGQDGEQRWDAVQAELDGAPAGQATQCCGGPQAASATGDAATGVCCT*
Ga0070712_1003646801	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GQDGAQRWDAVQAELDAPAGQATQCCGGPQVPGGEEAASSGVCCR*
Ga0070712_1005362212	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TFWGPDDEQRSDAIQAELGGAPAGQATQCCGGPQAASADESAATSACCG*
Ga0075021_111052521	3300006354	Watersheds	VLQDSPTFWGEDGGQGWDGVQGELDAAAAGQATQCCGGPQAAGQEEAASSGVCCG*
Ga0068871_1006311033	3300006358	Miscanthus Rhizosphere	WGQDGEQRWDAVEAELDGKPAGQATQCCGGPQAASGTGDAATGVCCA*
Ga0099828_103894171	3300009089	Vadose Zone Soil	PWEIYTVLEDSETFWGQDGAQRWEAVQAGLDATAAGQAVPCCGGPQPAGAVERAG*
Ga0105247_116097432	3300009101	Switchgrass Rhizosphere	AIQAELDGPQAGQATQCCGGPQAAADVAEDAAPGTCCA*
Ga0116216_105757592	3300009698	Peatlands Soil	EIYTVLQDSPTFWGQDGEQRWDTVQAELDAPAGQATQGCGGPQAAGREEPTSPGVCCG*
Ga0116223_101003233	3300009839	Peatlands Soil	YTVLQDSPTFWGEDGEQRWDAVQAELDAAPAGQATQCCGGPAGSAAETGAGASCC*
Ga0116223_105739942	3300009839	Peatlands Soil	YTVLQDSPTFWGEDGEQRWDAVQAELDAAPAGQATQCCGGPQAAGEEDAASSGACCG*
Ga0134071_107542331	3300010336	Grasslands Soil	WDAIQAELDTPAGQPTQCCAEPQATGQDAAASSGACCA*
Ga0126377_128833411	3300010362	Tropical Forest Soil	RWEIYTVLADSPTFWGQDDEQRWDAVQAELDAPAGQATQCCGGPEARGHEEACSSGVCCG
Ga0134125_114692422	3300010371	Terrestrial Soil	ERWEIYTVLEDSPTFWGQDGEQRWDAVEAELDGKPAGQATQCCGGPHAASGTGDAATGVCCA*
Ga0136449_1003590591	3300010379	Peatlands Soil	SPGGERWEIYAVLEDSPTFWGKDGEQSWDAVQTQLDAPARQATLCCGEAQAVGEEEE*
Ga0136449_1009093161	3300010379	Peatlands Soil	EQRWDAVQAELDAAPAGQATQCCGGPQAAGEEDAASVGACCG*
Ga0134126_117188381	3300010396	Terrestrial Soil	SPTFWGQDGEQRWDAVEAELDGKPAGQATQCCGGPQAASGTGDAATGVCCA*
Ga0126349_12980551	3300010861	Boreal Forest Soil	APGGERWEIYTVLQDSATFWGQDGEQRWDTVQAELDAPAGQATQCCGGPRAAGEDAASPGACCA*
Ga0126361_100766121	3300010876	Boreal Forest Soil	ATFWGQDGEQRWDAVEAELDSAPAGQATQCCGGPQAASATGDAAAGVCCA*
Ga0138556_1188451	3300011048	Peatlands Soil	DSPTFWGQDGGQRWDAVQGELDAEPAGQATQCCGGPQATSEDAASSAACCG*
Ga0138556_1553701	3300011048	Peatlands Soil	SERWEIYTVLQDSPTFWGEDGGQRWDAVQAELDASPAGQATQCCGGPQAAVEEDAASVGACCGSVQPGP*
Ga0138523_10683501	3300011054	Peatlands Soil	SERWEIYTVLQDSPTFWGQDGGQRWDAAQAELDAASAGQATQCCGGPQETSEDTASSGAYRG*
Ga0138567_10580422	3300011070	Peatlands Soil	YTVLQDSPTFWGEDGGQRWDAVQAELDTEPASQATQCCGGPQAAVEEDAASAGACCGSVQPGP*
Ga0138569_11133802	3300011079	Peatlands Soil	DAVQAELDAAPAGQATQCCGGPQPAGEEDAASSGACCG*
Ga0138564_10657244	3300011086	Peatlands Soil	PTFWGEDGEQRWDTVQAELDANPTGQATQCCGDPQAASEDAGSPGVCCG*
Ga0138564_10934511	3300011086	Peatlands Soil	DSPSFWGQDGGQRWDAVQAELDAAPPGQATQCCGGPQAAGEEDAASSSACCG*
Ga0138570_11179402	3300011087	Peatlands Soil	ERWEIYTVLQDSPTFWGQDGEQRWDTVQAELDAPAGQATQCCGGPQAAGREEPTSPGVCCG*
Ga0138570_11187462	3300011087	Peatlands Soil	ERWEIYTVLQDSPTFWGQDGEQRWDTVQAELDAPAGQATQCCDGPQAAGQEEPTSPGVCCG*
Ga0138579_13303481	3300011090	Peatlands Soil	GQRWDAVQAGLDAAPAGQATQCCGGPQAAGEDAASSGACCG*
Ga0137365_102040481	3300012201	Vadose Zone Soil	QDDEQRWGAVQAELDAPAGQPTQCCGGPQVSGQDEAASSGVCCG*
Ga0126375_117757153	3300012948	Tropical Forest Soil	LADSPTFWGQDDEQRWDAVQAELDAPAGQATQCCGGPEARGHEEAASSGVC*
Ga0157369_104958431	3300013105	Corn Rhizosphere	SEQRWDAVEAELDNAPAGQATQCCGEPRAGSATGDAATGVCCA*
Ga0157372_109886981	3300013307	Corn Rhizosphere	QDSEQRWDAVEAELDNAPAGQATQCCGEPRAGSAAGDAATGVCCA*
Ga0157379_111114472	3300014968	Switchgrass Rhizosphere	TFWGQDGEQRWDAVEAELDGKPAGQATQCCGGPQTASGTGGAATGVCCA*
Ga0157379_115927651	3300014968	Switchgrass Rhizosphere	EDSPTFWGQDGEQRWDAVEAELDGKPAGQATQCCGGPQAASGTGDAATGVCCA*
Ga0187887_104206242	3300018043	Peatland	EDSATFWGQDDERRSDAVQAELDAPAVQATQCCGGPQAASGDEPASSGVCCG
Ga0210408_102037921	3300021178	Soil	ADSPTFWGQDDEQRWDAVQAELDGAPAGQATQCCGGPQPASADEPAPASGCGG
Ga0210397_115724951	3300021403	Soil	PTFWGQDSEQRWDAVQAGLDRVPAGQATQCCGGPQAISEDAASIACCG
Ga0210389_109582933	3300021404	Soil	DTVQTELDAVPAGQATQCCGGPQAGREDEPASSSACCA
Ga0210384_102114124	3300021432	Soil	ERWEIYTVLQDSPTFWGQDGEQRWDAVQAELDAAPAGQVTQCCGGPQAAGEKDAASSGACCG
Ga0210402_106288582	3300021478	Soil	EIYTVLADSPTFWGQHDEQRWDAVQAELDTPAGQAAQCCGGPQAAGQDEAASSGACCV
Ga0210402_115743041	3300021478	Soil	DSPTFWGQHDEQRWDAVQAELDAPAGLATQCCAGPPAAGQEEAASPGACCA
Ga0210402_115916351	3300021478	Soil	FWGQDGEQRWDAVQAELDAPAGQATQCCGGPQAPGQEEAAPSGVCCG
Ga0242673_10070723	3300022716	Soil	YTVLADSPTFWGQHDEQRWDAVQAELDAPAGLATQCCAGPPAAGQEEAASPGACCA
Ga0207653_100454861	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	ERWEIYTVLEDTPTFWGQDGEQRWDAVEAELDAPAGQATQCCGGPQAASGTGDAATGVCC
Ga0207693_113067511	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VTFWGPDDEQRSDAIQAELGGAPAGQATQCCGGPQAASADESAATSACCG
Ga0207663_105553143	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GQDGEQRWDAVQAELDGAPAGQATQCCGGPQAASATGDAATGVCCT
Ga0207700_100920821	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	APGGQRWEIYTVLADSATFWGQDGEQRWDAVEAELDSAPTRQATQCCGGPQAASATGDAATGVCCA
Ga0207664_106391202	3300025929	Agricultural Soil	VLEDSATFWGPDDEQRSDAVQAELDGNPARQATQCCGGTQATEQREPASSNTCCA
Ga0207664_106830531	3300025929	Agricultural Soil	EDSATFWGPDDEQRSDAVQAELGAPAGQPAAQCCGGPQAAGAGEPASASACCG
Ga0207664_116753701	3300025929	Agricultural Soil	EDSPTFWGPDDEQRSDAIQAELGGAPAGQATQCCGGPQAASADESAATSACCG
Ga0207658_110212221	3300025986	Switchgrass Rhizosphere	YTVLEDTPTFWGQDGEQRWDAVEAELDAPAGQATQCCGGPQAASGTGDAATGVCCA
Ga0209027_12482311	3300026300	Grasslands Soil	EAELDDAPAGQATQCCGGPQATGQDEAAASGVCCG
Ga0209178_13494981	3300027725	Agricultural Soil	IYTVLADSPTFWGQHDEQRWDAVQAELDAPAEQAAQCCGGPQAAGQDEAASSGACCA
Ga0209068_109431062	3300027894	Watersheds	YTVLQDSPTFWGEDGGQGWDGVQGELDAAAAGQATQCCGGPQAAGQEEAASSGVCCG
Ga0307307_100798572	3300028718	Soil	RWEIYTVLADSPTFWGQDGEQRWDAVEAELDGALAGQATQCCGCPQAASATGDAATGVCC
Ga0302220_100896693	3300028742	Palsa	TFWGQDNEQRSDAVQAKLGAPAGQATQCCGGPQAASGDEPASASLCCG
Ga0307316_101982612	3300028755	Soil	PGGERWEIYTVLADSATFWGQDGEQRWDAVEAELDNAPAGQATQCCGGPQAGSTTGDAATGVCCA
Ga0302224_102515082	3300028759	Palsa	VQAKLGAPAGQATQCCGGPQAASGDEPASASLCCG
Ga0302234_100415191	3300028773	Palsa	DNEQRSDAVQAKLGAPAGQATQCCGGPQAASGDEPASASLCCG
Ga0307292_104841671	3300028811	Soil	WDAVQAELDSASAGQSTQCCGGPQMASADEPASSGACCG
Ga0311354_102052771	3300030618	Palsa	VLEDSATFWGQDDERRSDAVQAELGAPARQDTQCCGGPQPARGDEPASSGVCCG
Ga0265754_10313512	3300031040	Soil	YTVLQDSPTFWGQDAEQSRDTVQAGLDAPAGQATQCCGGPQAAGQEEPTSPGVCCG
Ga0307508_108146131	3300031616	Ectomycorrhiza	ATFWGQGDEQRWDAVEAELDGAPAGQAAPCCGGPQAASEDPASSGACCG
Ga0310686_1081760524	3300031708	Soil	WEIYTVLQDSPTFWGQDGGQRWDAVQAELDAAPARQATQCSCGPQAASEDTASSGACRG
Ga0306918_110661311	3300031744	Soil	GGERWEIYTVLADSPTFWGQDSEQRWDTVQAELDGAPTGQATQCCGGPQVGGEDEAAPSSARRA
Ga0318492_100997063	3300031748	Soil	RWEIYTVLEDSQTFWGQDGGQGWDAVQAELAVAPGAPARPSAQCCGGPQAAGEEAASSGACCG
Ga0318543_105826782	3300031777	Soil	RWEIYTVLADSPTFWGQDSEQRWDAVQAELETPAGQATQCCGGPQAAGHDEAASSGVCCG
Ga0318566_103230921	3300031779	Soil	SPTFWGQDSEQRWDAVQAELETPAGQATQCCGGPQAAGHDEAASSGVCCG
Ga0318567_100995881	3300031821	Soil	WEIYTVLEDSQTFWGQDGGQGWDAVQAELAVAPGAPARPSAQCCGGPQAAGEEAASSGACCG
Ga0318512_103173242	3300031846	Soil	GWDAVQAELAVAPGAPARPSAQCCGGPQAAGEEAASSGACCG
Ga0318512_103932981	3300031846	Soil	WEIYTVLADSPTFWGQDSEQRWDAVQAELETPAGQATQCCGGPQAAGHDEAASSGVCCG
Ga0318544_100930111	3300031880	Soil	IYTVLADSPTFWGQDSEQRWDAVQAELETPAGQATQCCGGPQAAGHDEAASSGVCCG
Ga0308175_1029006183	3300031938	Soil	WDAVQAELDAPAGQPTQCCGGSQAQGNEEAASSGVCCG
Ga0318506_103039341	3300032052	Soil	VLADSPTFWGQDSEQRWDAVQAELETPAGQATQCCGGPQAAGHDEAASSGVCCG
Ga0318575_100146136	3300032055	Soil	QDSEQRWDAVQAELETPAGQATQCCGGPQAAGHDEAASSGVCCG
Ga0318540_104377193	3300032094	Soil	TVLADSPTFWGQDSEQRWDAVQAELETPAGQATQCCGGPQAAGHDEAASSGVCCG
Ga0311301_101494051	3300032160	Peatlands Soil	SERWEIYTVLQDSPTFWGEDGGQRWDAVQAGLDAAPAGQATQCCGGPQAAGEDAASSGACCG
Ga0311301_127110732	3300032160	Peatlands Soil	SPTFWGQDGGQRWDAVQAELDAAPAGQATQCCGGPQPAGEEDAASSGACCG
Ga0335085_110154781	3300032770	Soil	RWEIYTVLQDSATFWGQDSEQRWDAVQAELDAPAGQATQCCGGPQAAGQEDPTPSRACCA
Ga0335085_111796913	3300032770	Soil	VLQDSPTFWGQDSEKRWDAVQAELDSAPAEQATRCCGEPQADGSARNAPSGACCG
Ga0335085_114464581	3300032770	Soil	GDEQRWDAVEAELDSTSAGQATQCCGGPQAASAGEPAANSACCG
Ga0335082_113321883	3300032782	Soil	SPTFWGENDEQRWDAVQAELDGPPAGQATQCCGGPQAASTGELTSTSTCCG
Ga0335072_115587762	3300032898	Soil	DSPTFWGQDDEQRWDAVQAELDAPAGQPTQCCGGPQAADKEESSSGVCCG
Ga0335083_108003102	3300032954	Soil	FWGQDDEQRWDAARAELGAPAGQATRCCGGPQATGQEEGATSGACCA
Ga0335073_102351821	3300033134	Soil	DSPTFWGQDGDQRWDAVEAELDGTPAGQVTQCCGGPQAASATGDAATGACCA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097900

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences